212 lines
7.6 KiB
VB.net
212 lines
7.6 KiB
VB.net
|
#Region "Microsoft.VisualBasic::08ea5c7237abc19bd95da3aca099d9bb, Microsoft.VisualBasic.Core\ComponentModel\Algorithm\Levenshtein\ResultVisualize.vb"
|
|||
|
|
|
|||
|
|
' Author:
|
|||
|
|
'
|
|||
|
|
' asuka (amethyst.asuka@gcmodeller.org)
|
|||
|
|
' xie (genetics@smrucc.org)
|
|||
|
|
' xieguigang (xie.guigang@live.com)
|
|||
|
|
'
|
|||
|
|
' Copyright (c) 2018 GPL3 Licensed
|
|||
|
|
'
|
|||
|
|
'
|
|||
|
|
' GNU GENERAL PUBLIC LICENSE (GPL3)
|
|||
|
|
'
|
|||
|
|
'
|
|||
|
|
' This program is free software: you can redistribute it and/or modify
|
|||
|
|
' it under the terms of the GNU General Public License as published by
|
|||
|
|
' the Free Software Foundation, either version 3 of the License, or
|
|||
|
|
' (at your option) any later version.
|
|||
|
|
'
|
|||
|
|
' This program is distributed in the hope that it will be useful,
|
|||
|
|
' but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|||
|
|
' MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|||
|
|
' GNU General Public License for more details.
|
|||
|
|
'
|
|||
|
|
' You should have received a copy of the GNU General Public License
|
|||
|
|
' along with this program. If not, see <http://www.gnu.org/licenses/>.
|
|||
|
|
|
|||
|
|
|
|||
|
|
|
|||
|
|
' /********************************************************************************/
|
|||
|
|
|
|||
|
|
' Summaries:
|
|||
|
|
|
|||
|
|
' Module ResultVisualize
|
|||
|
|
'
|
|||
|
|
' Function: __innerMatrix, __visualizeHTML, HTMLVisualize
|
|||
|
|
'
|
|||
|
|
'
|
|||
|
|
' /********************************************************************************/
|
|||
|
|
|
|||
|
|
#End Region
|
|||
|
|
|
|||
|
|
Imports System.Drawing
|
|||
|
|
Imports System.Runtime.CompilerServices
|
|||
|
|
Imports Microsoft.VisualBasic.Linq.Extensions
|
|||
|
|
Imports Microsoft.VisualBasic.Net.Http
|
|||
|
|
Imports Microsoft.VisualBasic.Text.Xml
|
|||
|
|
Imports Microsoft.VisualBasic.Text.Xml.Models
|
|||
|
|
Imports sys = System.Math
|
|||
|
|
|
|||
|
|
Namespace Text.Levenshtein
|
|||
|
|
|
|||
|
|
Public Module ResultVisualize
|
|||
|
|
|
|||
|
|
''' <summary>
|
|||
|
|
''' Output HTML result for visualization
|
|||
|
|
''' </summary>
|
|||
|
|
''' <returns></returns>
|
|||
|
|
<Extension>
|
|||
|
|
Public Function HTMLVisualize(result As DistResult) As String
|
|||
|
|
Try
|
|||
|
|
Return result.__visualizeHTML().FormatHTML
|
|||
|
|
Catch ex As Exception
|
|||
|
|
Call App.LogException(ex)
|
|||
|
|
Return _
|
|||
|
|
<html>
|
|||
|
|
<head>
|
|||
|
|
<title><%= NameOf(HTTP_RFC.RFC_INTERNAL_SERVER_ERROR) %></title>
|
|||
|
|
</head>
|
|||
|
|
<body>
|
|||
|
|
<pre><%= ex.ToString %></pre>
|
|||
|
|
</body>
|
|||
|
|
</html>
|
|||
|
|
End Try
|
|||
|
|
End Function
|
|||
|
|
|
|||
|
|
<Extension>
|
|||
|
|
Private Function __visualizeHTML(dist As DistResult) As String
|
|||
|
|
Dim html As New XmlBuilder()
|
|||
|
|
Dim edits$ = dist.DistEdits
|
|||
|
|
|
|||
|
|
html += <h3>Summary</h3>
|
|||
|
|
html += "<table>"
|
|||
|
|
html += <tr>
|
|||
|
|
<td>Reference: </td>
|
|||
|
|
<td><%= dist.__getReference.Length %>(chars)</td>
|
|||
|
|
<td><%= dist.Reference %></td>
|
|||
|
|
</tr>
|
|||
|
|
html += <tr>
|
|||
|
|
<td>Hypotheses: </td>
|
|||
|
|
<td><%= dist.__getSubject.Length %>(chars)</td>
|
|||
|
|
<td><%= dist.Hypotheses %></td>
|
|||
|
|
</tr>
|
|||
|
|
html += dist.__innerInsert
|
|||
|
|
html += <tr>
|
|||
|
|
<td>Distance: </td>
|
|||
|
|
<td></td>
|
|||
|
|
<td><%= dist.Distance %></td>
|
|||
|
|
</tr>
|
|||
|
|
html += <tr>
|
|||
|
|
<td>Similarity: </td>
|
|||
|
|
<td></td>
|
|||
|
|
<td><%= dist.MatchSimilarity * 100 %>%</td>
|
|||
|
|
</tr>
|
|||
|
|
html += "</table>"
|
|||
|
|
html += <hr/>
|
|||
|
|
html += <h4>Levenshtein Edit Distance Table</h4>
|
|||
|
|
html += <p>
|
|||
|
|
Levenshtein Edit: <br/>
|
|||
|
|
<strong><%= edits %></strong> have (<%= edits.Count("m"c) %>/<%= Len(edits) %>) matches.<br/>
|
|||
|
|
|
|||
|
|
<p>
|
|||
|
|
<table>
|
|||
|
|
<tr><td>d</td><td> -> Delete</td></tr>
|
|||
|
|
<tr><td>i</td><td> -> Insert</td></tr>
|
|||
|
|
<tr><td>m</td><td> -> Match</td></tr>
|
|||
|
|
<tr><td>s</td><td> -> Substitute</td></tr>
|
|||
|
|
</table>
|
|||
|
|
</p>
|
|||
|
|
</p>
|
|||
|
|
|
|||
|
|
html += dist.__innerMatrix
|
|||
|
|
|
|||
|
|
Return (<html>
|
|||
|
|
<head>
|
|||
|
|
<title><%= dist.ToString %></title>
|
|||
|
|
</head>
|
|||
|
|
<body style="font-family:Ubuntu;">
|
|||
|
|
$content
|
|||
|
|
</body>
|
|||
|
|
</html>).ToString _
|
|||
|
|
.Replace("$content", html.ToString)
|
|||
|
|
End Function
|
|||
|
|
|
|||
|
|
<Extension> Private Function __innerMatrix(matrix As DistResult) As String
|
|||
|
|
Dim dict As Dictionary(Of Integer, Integer())
|
|||
|
|
|
|||
|
|
If matrix.DistTable Is Nothing Then
|
|||
|
|
Return ""
|
|||
|
|
End If
|
|||
|
|
|
|||
|
|
If matrix.Path.IsNullOrEmpty Then
|
|||
|
|
dict = New Dictionary(Of Integer, Integer())
|
|||
|
|
Else
|
|||
|
|
Dim g = From cell As Point
|
|||
|
|
In matrix.Path
|
|||
|
|
Select cell
|
|||
|
|
Group cell By cell.X Into Group
|
|||
|
|
|
|||
|
|
dict = g _
|
|||
|
|
.ToDictionary(Function(row) row.X,
|
|||
|
|
Function(row)
|
|||
|
|
Return row _
|
|||
|
|
.Group _
|
|||
|
|
.Select(Function(cell) cell.Y) _
|
|||
|
|
.ToArray
|
|||
|
|
End Function)
|
|||
|
|
End If
|
|||
|
|
|
|||
|
|
Dim Reference As String = matrix.__getReference()
|
|||
|
|
Dim Hypotheses As String = matrix.__getSubject()
|
|||
|
|
Dim MAT As New XmlBuilder
|
|||
|
|
Dim hyps$() = Hypotheses _
|
|||
|
|
.Select(Function(c)
|
|||
|
|
Return <td>
|
|||
|
|
<strong><%= c %></strong>
|
|||
|
|
</td>
|
|||
|
|
End Function) _
|
|||
|
|
.Select(Function(s) s.ToString) _
|
|||
|
|
.ToArray
|
|||
|
|
|
|||
|
|
MAT += (<tr>
|
|||
|
|
<td></td>
|
|||
|
|
$content
|
|||
|
|
</tr>).ToString _
|
|||
|
|
.Replace("$content", hyps.JoinBy(""))
|
|||
|
|
|
|||
|
|
For i As Integer = 0 To Len(Reference) - 1
|
|||
|
|
Dim r As New XmlBuilder
|
|||
|
|
|
|||
|
|
For j As Integer = 0 To Len(Hypotheses) - 1
|
|||
|
|
Dim c = sys.Round(matrix.DistTable(i)(j), 2)
|
|||
|
|
|
|||
|
|
If dict.ContainsKey(i) AndAlso Array.IndexOf(dict(i), j) > -1 Then
|
|||
|
|
r += <td style="background-color:green;color:white">
|
|||
|
|
<strong><%= c %></strong>
|
|||
|
|
</td>
|
|||
|
|
Else
|
|||
|
|
r += <td><%= c %></td>
|
|||
|
|
End If
|
|||
|
|
Next
|
|||
|
|
|
|||
|
|
MAT += (<tr>
|
|||
|
|
<td>
|
|||
|
|
<strong><%= Reference(i) %></strong>
|
|||
|
|
</td>
|
|||
|
|
$content
|
|||
|
|
<td style="background-color:blue;color:white">
|
|||
|
|
<strong><%= matrix.DistEdits(i) %></strong>
|
|||
|
|
</td>
|
|||
|
|
</tr>).ToString _
|
|||
|
|
.Replace("$content", r.ToString)
|
|||
|
|
Next
|
|||
|
|
|
|||
|
|
Return (<table>
|
|||
|
|
$content
|
|||
|
|
</table>).ToString _
|
|||
|
|
.Replace("$content", MAT.ToString)
|
|||
|
|
End Function
|
|||
|
|
End Module
|
|||
|
|
End Namespace
|