Pedro Martinez Mediano
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c15c643a09
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Added tests for new embeddings in univariate KSG TE calculator.
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2018-04-22 22:25:40 +01:00 |
Pedro Martinez Mediano
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df8eec27cd
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Added MAX_CORR_AIS_AND_TE embedding to univariate KSG TE calculator.
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2018-04-22 22:25:05 +01:00 |
Pedro Martinez Mediano
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f8bca3275d
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Fixed docs for new MAX_CORR_AIS_AND_TE embedding method.
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2018-04-22 20:45:06 +01:00 |
Joseph Lizier
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9c40d7fadc
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Fixed wiki link on homepage
Fixed wiki link for ImplementedMeasures on the homepage
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2018-03-16 10:47:45 +11:00 |
Pedro Martinez Mediano
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02dad26a94
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Added brief mention of AUTO_EMBED_METHOD_MAX_CORR_AIS_AND_TE to javadocs.
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2018-02-27 20:29:39 +00:00 |
Pedro Martinez Mediano
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03d5e2fb2f
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Added tests for new TE autoembedding methods.
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2018-02-27 20:18:28 +00:00 |
Pedro Martinez Mediano
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5f6671aa2b
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Added AUTO_EMBED_METHOD_MAX_CORR_AIS_AND_TE to multivariate KSG TE.
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2018-02-27 20:18:04 +00:00 |
Pedro Martinez Mediano
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d4c9b28973
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Fixed error in KSG TE multivariate tester.
Tester was wrongly calling the univariate version of the algorithm using
the first column of the input.
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2018-02-27 20:16:44 +00:00 |
Pedro Martinez Mediano
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550ff793eb
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Fixed bug in KSG TE multivariate embeddings and setObservations.
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2018-02-27 20:14:08 +00:00 |
Pedro Martinez Mediano
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438a88c97c
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Added unittests for multivariate KSG TE autoembedding.
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2018-02-27 17:56:42 +00:00 |
Pedro Martinez Mediano
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8be6a037af
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Added auto-embedding methods to multivariate KSG TE calculator.
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2018-02-25 19:23:09 +00:00 |
Pedro Martinez Mediano
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ce4b1599c6
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Added MAX_CORR_AIS embedding method to multivariate KSG AIS.
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2018-02-25 18:57:15 +00:00 |
Pedro Martinez Mediano
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75bb2c814a
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Added addObservations-related methods to multivariate TE calculators.
This is needed to implement auto-embedding methods later.
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2018-02-25 18:54:36 +00:00 |
Joseph Lizier
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fa0bc96a6f
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Merge pull request #67 from pmediano/master
Add new set- and addObservations overloadings in KSG mixed calculator
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2018-01-29 12:13:51 +11:00 |
Pedro Martinez Mediano
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08f25beee6
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Add tests for new overloadings in KSG mixed calc.
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2018-01-12 22:23:12 +00:00 |
Pedro Martinez Mediano
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b0fc309d6a
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Add overloadings for 1d continuous variables in KSG mixed calc.
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2018-01-12 22:22:46 +00:00 |
jlizier
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b32d9443eb
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Including the new "course" folder in the distribution produced by ant
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2018-01-09 11:41:41 +11:00 |
jlizier
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9feff283c4
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First versions of Lecture slides for information theory course uploaded. Tutorial activities and sample code to come later.
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2018-01-09 11:39:46 +11:00 |
jlizier
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0278f95ae9
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Enabled use of USE_GPU property for KSG calculators in the AutoAnalysers for CMI, TE, CTE and AIS
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2017-12-30 12:03:17 +11:00 |
Joseph Lizier
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6b5e3237ed
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Merge pull request #65 from pmediano/master
Added GPU implementation of KSG CMI calculator
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2017-12-21 12:01:10 +11:00 |
Pedro Martinez Mediano
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92f1154e3d
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Added smoke junit tests for GPU CMI reordering.
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2017-12-19 20:43:25 +00:00 |
Pedro Martinez Mediano
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64f1142b40
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Added argument to choose which variable to reorder in GPU CMI code.
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2017-12-19 20:42:58 +00:00 |
Pedro Martinez Mediano
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65ac0e9ff8
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Removed unnecesary overloaded method in KSG CMI calc.
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2017-12-19 20:41:11 +00:00 |
Pedro Martinez Mediano
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2c518ab436
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Merge branch 'master' into gpu
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2017-12-18 18:53:57 +00:00 |
Pedro Martinez Mediano
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76e7277e95
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Removed unnecessary prints in GPU C unit tests.
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2017-12-18 18:43:01 +00:00 |
Pedro Martinez Mediano
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82593e1db2
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Refactored gpuKnn functions for digamma calculation.
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2017-12-18 18:27:05 +00:00 |
Pedro Martinez Mediano
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4949a1079d
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Added junit KSG GPU CMI tests.
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2017-12-18 17:51:03 +00:00 |
Pedro Martinez Mediano
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2f1cd192b8
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Fixed small typo in Java KSG CMI calculator.
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2017-12-18 17:50:37 +00:00 |
Pedro Martinez Mediano
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39fb538945
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Added C CMI unit tests.
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2017-12-18 17:49:50 +00:00 |
Pedro Martinez Mediano
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fc40c279cd
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Added final code to call gpuCMI functions from JNI.
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2017-12-18 17:49:32 +00:00 |
Pedro Martinez Mediano
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75a303875d
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Replaced stub functions in gpuCMILibrary with correct code.
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2017-12-18 17:48:57 +00:00 |
Pedro Martinez Mediano
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f1bd757dc0
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Added versions of gpuKnn functions adapted for CMI. Refactoring needed.
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2017-12-18 17:47:53 +00:00 |
Pedro Martinez Mediano
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1fb4015df5
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Remove debug mode from junit GPU MI tests.
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2017-12-18 17:43:15 +00:00 |
Joseph Lizier
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a9dac705a8
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Merge pull request #64 from pmediano/master
Improvements to Kozachenko multivariate entropy calculator.
Looks great, thanks Pedro. Fixes issue #56, will close it
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2017-12-18 15:56:22 +11:00 |
Pedro Martinez Mediano
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d0304ae0c4
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Added Java-side JNI functions and ensureKdTreesConstructed to KSG CMI.
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2017-12-12 11:19:40 +00:00 |
Pedro Martinez Mediano
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9248005de5
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Added stub JNI function for KSG CMI.
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2017-12-12 11:18:27 +00:00 |
Pedro Martinez Mediano
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6a13b80531
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Added stub gpuCMILibrary and updated Makefile.
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2017-12-12 11:17:48 +00:00 |
Pedro Martinez Mediano
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b7dd2fca5f
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Moved common defs from gpuMILibrary to gpuKnnLibrary.
In preparation for gpuCMILibrary.
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2017-12-12 11:16:03 +00:00 |
Pedro Martinez Mediano
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f4ca442de4
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Now KSG MI calc does not build KdTrees if GPU is going to be used.
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2017-12-12 11:10:50 +00:00 |
Pedro Martinez Mediano
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d010f32635
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Updated getProperty and removed spurious dependency in KSG MI calc.
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2017-12-12 11:04:32 +00:00 |
Pedro Martinez Mediano
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eabd7f3701
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Fixed typo in Kozachenko entropy calculator.
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2017-11-28 16:58:13 +00:00 |
Pedro Martinez Mediano
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444fb70801
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Added addObservations-type functions to Kozachenko entropy calculator.
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2017-11-28 16:56:51 +00:00 |
Pedro Martinez Mediano
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e290040d8d
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Added docs to Kozachenko entropy calculator.
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2017-11-28 16:26:46 +00:00 |
Pedro Martinez Mediano
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35df6ca3da
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Kozachenko entropy estimator now adds noise to data by default.
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2017-11-28 16:04:09 +00:00 |
jlizier
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9c96ceb850
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Fixed logic for when parameter values (in particular auto-embedded properties) are written back into the properties table after the calculation. This was happening only when we had the "all pairs" option selection, when it should only happen when this is not selected.
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2017-11-28 12:36:06 +11:00 |
jlizier
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9e669bceed
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Changing links in readme.md to v1.4, and final update of readme for the release
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2017-11-27 11:58:54 +11:00 |
jlizier
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589d51674e
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Altering the escaped data filename in AutoAnalyser to be properly escaped using non-regex replace, and also rolling back the use of escaping to only Java (Matlab and Python on windows seem fine with the non-escaped filenames, for e.g. the paths earlier in the generated code)
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2017-11-27 10:19:36 +11:00 |
jlizier
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3bfbaa7ad3
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In AutoAnalyser escaping data filenames when they are written to the generated code. This is important for windows filenames. Am not sure why it didn't come up before as an issue though.
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2017-11-27 09:57:07 +11:00 |
jlizier
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f902aa69dd
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Fixed comment character in bat file to run the auto generated code
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2017-11-27 09:42:30 +11:00 |
jlizier
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e3a71b0a7e
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Updating readme for the release after various bug patches
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2017-11-27 09:28:04 +11:00 |