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792 Commits

Author SHA1 Message Date
David Shorten a398c925a8 added python for spiking network inference 2022-08-04 16:03:12 +09:30
David Shorten c068c8308d improving jittered surrogates 2022-02-25 18:49:12 +11:00
David Shorten 285c95947a integrating artemis changes 2022-02-22 14:39:15 +11:00
David Shorten b4e32727c9 merge 2022-02-22 11:55:09 +11:00
David Shorten c8d17e9522 functionality allowing specific embedding intervals 2021-08-23 17:50:34 +10:00
David Shorten dd215fdfbb spiking surrogates implemented 2021-08-11 09:20:35 +10:00
David Shorten dc85001ff7 refactoring + conditional processes + radius sharing + euclidean norm working 2021-08-02 22:06:07 +10:00
David Shorten 9a17361cca minor edits 2021-07-26 21:34:22 +10:00
David Shorten dc226be60a minor refactorings 2021-07-25 17:47:27 +10:00
David Shorten 8d7c598022 better testing script and a touch of refactoring 2021-07-25 17:30:30 +10:00
David Shorten cf5f8edf5e confirmed working on canonical ex 2021-07-25 16:29:31 +10:00
David Shorten 4ece80b5ef appear to have 4kl estimator working 2021-07-24 23:32:57 +10:00
David Shorten bb51b09048 converting embedding vectors to arrays for the trees 2021-07-23 17:54:46 +10:00
David Shorten 0e530cdceb history embeddings done 2021-07-23 17:26:18 +10:00
David Shorten deb9d97520 advancing previous indices throughout iteration 2021-07-22 19:06:53 +10:00
David Shorten fe0fb2ed49 positioning embeddings start point 2021-07-22 17:55:00 +10:00
David Shorten 56dacc5232 some progress towards PCB spiking estimator 2021-07-22 14:19:36 +10:00
David Shorten 4f889df786 added testing script 2021-07-21 10:15:08 +10:00
David Shorten 4985def021 fixed weirdness 2019-02-01 15:35:26 +11:00
David Shorten ea8a322b61 end Tues 2019-01-29 19:51:21 +11:00
David Shorten fcbf5e7dac end Thurs 2019-01-22 19:17:36 +11:00
David Shorten 8bcf41e572 end Wed 2018-12-19 17:15:47 +11:00
David Shorten 504c6262f0 end Tues 2018-12-18 20:32:37 +11:00
David Shorten 23abc021ac modification to calculation for point inclusion 2018-12-11 16:15:03 +11:00
David Shorten 064953c584 bit of cleaning up 2018-12-11 15:18:51 +11:00
David Shorten b467ea22a1 option of using same K for dest history 2018-12-11 15:15:26 +11:00
David Shorten 9f51dc284c option of not doing radius trimming 2018-12-11 12:21:27 +11:00
David Shorten 6f8ae62fee option of excluding the point itself 2018-12-11 12:03:44 +11:00
David Shorten 267796dc83 forced inclusion of TransferEntropyCalculatorSpikingIntegration.java 2018-12-10 20:29:54 +11:00
David Shorten ec01683592 Incorporated JL code from 21/11/2018 2018-12-10 20:22:15 +11:00
David Shorten fa9a45a9cf added in the original spiking estimator code 2018-12-10 17:12:15 +11:00
Joseph Lizier 2ba27f30ac
Merge pull request #73 from pmediano/master 
Minor updates to GPU tests and examples following v1.5 release.
 2018-11-26 10:28:15 +11:00
Pedro Martinez Mediano 4908276333 GPU tests and example now compute multiple surrogates. 2018-11-25 19:45:48 +02:00
Pedro Martinez Mediano c616ba55d4 Added link to wiki in GPU loader error message. 2018-11-25 19:25:33 +02:00
jlizier bd6a9a2601 Updating links to latest release to v1.5 on front page. Also fixed indenting 2018-11-26 00:33:58 +11:00
jlizier eefe1e1a8b Updating readme-template.txt and ready for release v1.5 2018-11-25 23:48:10 +11:00
jlizier ee1ef4909c Storing executable permissions for jar file, .sh and .bat files in the distribution .zip and now making a .tar.gz distribution also 2018-11-25 23:39:44 +11:00
jlizier a3ec963618 Updating demos PDFs again 2018-11-25 23:38:49 +11:00
jlizier 603445651c Moving GPU readme from wiki into CUDA folder 2018-11-25 23:27:27 +11:00
jlizier 7bd6496a40 Removed old .sh and .bat files for running AutoAnalyser for individual measures (now replaced by launchAutoAnalyser) 2018-11-25 22:38:08 +11:00
jlizier cd1d4c2684 Adding executable permission to Java demo 10 for GPU 2018-11-25 21:57:25 +11:00
jlizier 7910828ad7 Added release notes for v1.5 to readme-template.txt 2018-11-25 21:52:07 +11:00
jlizier dc4e59f945 Updating tutorial wiki page PDF 2018-11-25 21:50:53 +11:00
jlizier b6a5285b9b Updated version number in build.xml ready for new release 2018-11-25 21:48:29 +11:00
jlizier 3c24debea5 Updating PDFs of wiki pages of all demos to make sure they are up to date; includes adding the new wiki page for GPU 2018-11-25 21:47:41 +11:00
jlizier 16015e0f12 Nearest neighbour searchers now return number of points found for findPointsWithinR as well as marking them in input arrays. Also added new method sumDistanceAboveThresholdForPointsWithinRs() for the univariate searcher (to be used in spiking TE estimator under development) 2018-11-24 21:16:36 +11:00
David Shorten af7fbd6c37 added spiking measures 2018-11-19 15:55:24 +11:00
jlizier 8909c23fcc Incorporated auto-embedding in the TE multivariate via conditional MI common class. Much of the code is moved up from the TE multivariate KSG estimator; now the functionality is provided for multivariate Gaussian as well. Also necessitated adding the max_cor_num_surrogates property to TE multivariate Gaussian, and took the opportunity to make much of the whitespace here consistent, and unit tests added for Gaussian (tweaked slightly for KSG) 2018-10-18 00:58:17 +11:00
jlizier 42f8d01e26 Adding property of number of dimensions for the AIS multivariate calculator (and implemented in the via MI common class). Needed this to make multivariate TE embedding a bit neater, and it should be there anyway. 2018-10-18 00:51:37 +11:00
jlizier e1bad39e4e Added proper full definitions for the methods of the AIS multivariate interface; much of this is achieved by extending the univariate AIS interface (which mandates that the univariate methods must be supported). No current child classes required any changes as they all supported these already. Removed superfluous documentation in the AIS multivariate via MI class (as well as fixing whitespace inconsistencies therein) 2018-10-17 23:37:43 +11:00