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Switched coupled logistic map example for TE Delays paper with Wibral et al to use Kraskov type 1 estimator (this is much simpler for TE and conditional MI) as per TRENTOOL

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joseph.lizier 2013-01-16 01:30:04 +00:00
parent 9d36e5d9a6
commit 6196cb5710
1 changed files with 1 additions and 1 deletions
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demos/octave/DetectingInteractionLags/coupledLogisticMap.m
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@ -114,7 +114,7 @@ function coupledLogisticMap()
% Create a TE calculator and run it: % Create a TE calculator and run it:
% Using a single conditional mutual information calculator is the least biased way to run this: % Using a single conditional mutual information calculator is the least biased way to run this:
teCalc=javaObject('infodynamics.measures.continuous.kraskov.ConditionalMutualInfoCalculatorMultiVariateKraskov2'); teCalc=javaObject('infodynamics.measures.continuous.kraskov.ConditionalMutualInfoCalculatorMultiVariateKraskov1');
% Perform calculation for X -> Y (lag 1) % Perform calculation for X -> Y (lag 1)
teCalc.initialise(1,1,k); % Use history length k (Schreiber k) teCalc.initialise(1,1,k); % Use history length k (Schreiber k)
teCalc.setProperty('k', KraskovK); teCalc.setProperty('k', KraskovK);