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Adding comment to Flocking demo that Econometrics Toolbox may be required

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jlizier 2022-08-30 12:37:03 +10:00
parent d250c6b24c
commit 5398785a67
1 changed files with 2 additions and 1 deletions
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demos/octave/FlockingAnalysis/NetLogoExample/loadProperties.m
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@ -89,6 +89,7 @@ properties.includeSourcePositionInTransfer = false;
% Do we take relative source heading and position with respect to dest heading at that same % Do we take relative source heading and position with respect to dest heading at that same
% time point (true, this is what we did for Crosato paper) or with respect % time point (true, this is what we did for Crosato paper) or with respect
% to dest heading just previous to state update (false)? % to dest heading just previous to state update (false)?
% UPDATE THIS COMMENT TO MAKE MORE SENSE. Ash and Liss say false is more biologically realistic
properties.sourceWrtSameDestTime = true; properties.sourceWrtSameDestTime = true;
% JIDT location: % JIDT location:
@ -101,7 +102,7 @@ properties.estimator = 'kraskov';
% Properties for JIDT estimators: % Properties for JIDT estimators:
properties.jidt.kNNs = 4; % Number of nearest neighbours for Kraskov algorithm: just use 4 (default) properties.jidt.kNNs = 4; % Number of nearest neighbours for Kraskov algorithm: just use 4 (default)
properties.jidt.autoDynamicCorrelationExclusion = true; % Exclude nearest neighbours from at least the same target transition from being included in counts for TE properties.jidt.autoDynamicCorrelationExclusion = true; % Exclude nearest neighbours from at least the same target transition from being included in counts for TE. This requires the Econometrics Toolbox in Matlan in order to call autocorr. Set to false if you don't have that to avoid this being called.
properties.aisNumSurrogates = 0; % Number of surrogate calculations to run for AIS (just to see the noise floor. 0 means skip) properties.aisNumSurrogates = 0; % Number of surrogate calculations to run for AIS (just to see the noise floor. 0 means skip)
properties.teNumSurrogates = 0; % Number of surrogate calculations to run for TE (just to see the noise floor. 0 means skip) properties.teNumSurrogates = 0; % Number of surrogate calculations to run for TE (just to see the noise floor. 0 means skip)