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Adding auto-embedding properies to AutoAnalyser GUI Active Info Storage for all continuous calculators (was only in KSG before)

This commit is contained in:
jlizier 2018-08-22 15:53:09 +10:00
parent 4b6fc39c72
commit 323ef47475
1 changed files with 26 additions and 24 deletions
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50
java/source/infodynamics/demos/autoanalysis/AutoAnalyserAIS.java
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@ -19,6 +19,7 @@
package infodynamics.demos.autoanalysis;
import infodynamics.measures.continuous.ActiveInfoStorageCalculator;
import infodynamics.measures.continuous.ActiveInfoStorageCalculatorViaMutualInfo;
import infodynamics.measures.continuous.InfoMeasureCalculatorContinuous;
import infodynamics.measures.continuous.gaussian.ActiveInfoStorageCalculatorGaussian;
import infodynamics.measures.continuous.kernel.ActiveInfoStorageCalculatorKernel;
@ -119,19 +120,40 @@ public class AutoAnalyserAIS extends AutoAnalyser {
// Common properties for all continuous calcs:
commonContPropertyNames = new String[] {
ActiveInfoStorageCalculator.K_PROP_NAME,
ActiveInfoStorageCalculator.TAU_PROP_NAME
ActiveInfoStorageCalculator.TAU_PROP_NAME,
ActiveInfoStorageCalculatorViaMutualInfo.PROP_AUTO_EMBED_METHOD,
ActiveInfoStorageCalculatorViaMutualInfo.PROP_K_SEARCH_MAX,
ActiveInfoStorageCalculatorViaMutualInfo.PROP_TAU_SEARCH_MAX,
};
commonContPropertiesFieldNames = new String[] {
"K_PROP_NAME",
"TAU_PROP_NAME"
"TAU_PROP_NAME",
"ActiveInfoStorageCalculatorViaMutualInfo.PROP_AUTO_EMBED_METHOD",
"ActiveInfoStorageCalculatorViaMutualInfo.PROP_K_SEARCH_MAX",
"ActiveInfoStorageCalculatorViaMutualInfo.PROP_TAU_SEARCH_MAX",
};
commonContPropertyDescriptions = new String[] {
"History embedding length (k_HISTORY)",
"History embedding delay (k_TAU)"
"History embedding delay (k_TAU)",
"Method to automatically determine embedding length (k_HISTORY)<br/> and delay (k_TAU) for " +
"the samples. Default is \"" + ActiveInfoStorageCalculatorKraskov.AUTO_EMBED_METHOD_NONE +
"\" meaning values are set manually; other values include: <br/> -- \"" + ActiveInfoStorageCalculatorKraskov.AUTO_EMBED_METHOD_RAGWITZ +
"\" for use of the Ragwitz criteria for both source and destination (searching up to \"" + ActiveInfoStorageCalculatorKraskov.PROP_K_SEARCH_MAX +
"\" and \"" + ActiveInfoStorageCalculatorKraskov.PROP_TAU_SEARCH_MAX + "\"); <br/> -- \"" + ActiveInfoStorageCalculatorKraskov.AUTO_EMBED_METHOD_MAX_CORR_AIS +
"\" for maximising the (bias corrected) Active Info Storage (searching up to \"" + ActiveInfoStorageCalculatorKraskov.PROP_K_SEARCH_MAX +
"\" and \"" + ActiveInfoStorageCalculatorKraskov.PROP_TAU_SEARCH_MAX + "\"); <br/>Use of values other than \"" + ActiveInfoStorageCalculatorKraskov.AUTO_EMBED_METHOD_NONE +
"\" leads to any previous settings for embedding lengths and delays to be overwritten after observations are supplied",
"Max. embedding length to search to <br/>if auto embedding (as determined by " + ActiveInfoStorageCalculatorKraskov.PROP_AUTO_EMBED_METHOD + ")",
"Max. embedding delay to search to <br/>if auto embedding (as determined by " + ActiveInfoStorageCalculatorKraskov.PROP_AUTO_EMBED_METHOD + ")",
};
commonContPropertyValueChoices = new String[][] {
null,
null
null,
{ActiveInfoStorageCalculatorViaMutualInfo.AUTO_EMBED_METHOD_NONE,
ActiveInfoStorageCalculatorViaMutualInfo.AUTO_EMBED_METHOD_RAGWITZ,
ActiveInfoStorageCalculatorViaMutualInfo.AUTO_EMBED_METHOD_MAX_CORR_AIS},
null,
null,
};
// Gaussian properties:
gaussianProperties = new String[] {
@ -176,9 +198,6 @@ public class AutoAnalyserAIS extends AutoAnalyser {
MutualInfoCalculatorMultiVariateKraskov.PROP_NORM_TYPE,
MutualInfoCalculatorMultiVariateKraskov.PROP_NUM_THREADS,
MutualInfoCalculatorMultiVariateKraskov.PROP_USE_GPU,
ActiveInfoStorageCalculatorKraskov.PROP_AUTO_EMBED_METHOD,
ActiveInfoStorageCalculatorKraskov.PROP_K_SEARCH_MAX,
ActiveInfoStorageCalculatorKraskov.PROP_TAU_SEARCH_MAX,
ActiveInfoStorageCalculatorKraskov.PROP_RAGWITZ_NUM_NNS,
};
kraskovPropertiesFieldNames = new String[] {
@ -189,9 +208,6 @@ public class AutoAnalyserAIS extends AutoAnalyser {
"MutualInfoCalculatorMultiVariateKraskov.PROP_NORM_TYPE",
"MutualInfoCalculatorMultiVariateKraskov.PROP_NUM_THREADS",
"MutualInfoCalculatorMultiVariateKraskov.PROP_USE_GPU",
"PROP_AUTO_EMBED_METHOD",
"PROP_K_SEARCH_MAX",
"PROP_TAU_SEARCH_MAX",
"PROP_RAGWITZ_NUM_NNS"
};
kraskovPropertyDescriptions = new String[] {
@ -207,16 +223,6 @@ public class AutoAnalyserAIS extends AutoAnalyser {
"Number of parallel threads to use <br/>in computation: an integer > 0 or \"USE_ALL\" " +
"(default, to indicate to use all available processors)",
"Whether to enable the GPU module (number of threads then has no bearing); boolean, default false",
"Method to automatically determine embedding length (k_HISTORY)<br/> and delay (k_TAU) for " +
"the samples. Default is \"" + ActiveInfoStorageCalculatorKraskov.AUTO_EMBED_METHOD_NONE +
"\" meaning values are set manually; other values include: <br/> -- \"" + ActiveInfoStorageCalculatorKraskov.AUTO_EMBED_METHOD_RAGWITZ +
"\" for use of the Ragwitz criteria for both source and destination (searching up to \"" + ActiveInfoStorageCalculatorKraskov.PROP_K_SEARCH_MAX +
"\" and \"" + ActiveInfoStorageCalculatorKraskov.PROP_TAU_SEARCH_MAX + "\"); <br/> -- \"" + ActiveInfoStorageCalculatorKraskov.AUTO_EMBED_METHOD_MAX_CORR_AIS +
"\" for maximising the (bias corrected) Active Info Storage (searching up to \"" + ActiveInfoStorageCalculatorKraskov.PROP_K_SEARCH_MAX +
"\" and \"" + ActiveInfoStorageCalculatorKraskov.PROP_TAU_SEARCH_MAX + "\"); <br/>Use of values other than \"" + ActiveInfoStorageCalculatorKraskov.AUTO_EMBED_METHOD_NONE +
"\" leads to any previous settings for embedding lengths and delays to be overwritten after observations are supplied",
"Max. embedding length to search to <br/>if auto embedding (as determined by " + ActiveInfoStorageCalculatorKraskov.PROP_AUTO_EMBED_METHOD + ")",
"Max. embedding delay to search to <br/>if auto embedding (as determined by " + ActiveInfoStorageCalculatorKraskov.PROP_AUTO_EMBED_METHOD + ")",
"Number of k nearest neighbours for <br/>Ragwitz auto embedding (if used; defaults to match property \"k\")"
};
kraskovPropertyValueChoices = new String[][] {
@ -227,10 +233,6 @@ public class AutoAnalyserAIS extends AutoAnalyser {
{"MAX_NORM", "EUCLIDEAN", "EUCLIDEAN_SQUARED"},
null,
{"true", "false"},
{ActiveInfoStorageCalculatorKraskov.AUTO_EMBED_METHOD_NONE, ActiveInfoStorageCalculatorKraskov.AUTO_EMBED_METHOD_RAGWITZ,
ActiveInfoStorageCalculatorKraskov.AUTO_EMBED_METHOD_MAX_CORR_AIS},
null,
null,
null,
};
}