diff --git a/clang/include/clang/StaticAnalyzer/Core/PathSensitive/ObjCMessage.h b/clang/include/clang/StaticAnalyzer/Core/PathSensitive/ObjCMessage.h
index f01bad02c203..8fc4050c7e08 100644
--- a/clang/include/clang/StaticAnalyzer/Core/PathSensitive/ObjCMessage.h
+++ b/clang/include/clang/StaticAnalyzer/Core/PathSensitive/ObjCMessage.h
@@ -199,10 +199,16 @@ public:
 
   /// Check if the callee is declared in the system header.
   bool isInSystemHeader() const {
-    if (const Decl *FD = getDecl()) {
+    if (const Decl *D = getDecl()) {
       const SourceManager &SM =
         State->getStateManager().getContext().getSourceManager();
-      return SM.isInSystemHeader(FD->getLocation());
+      SourceLocation Loc = D->getLocation();
+      // Be careful: the implicit declarations of operator new/delete have
+      // invalid source locations but should still count as system files.
+      if (Loc.isValid())
+        return SM.isInSystemHeader(D->getLocation());
+      else if (const FunctionDecl *FD = dyn_cast<FunctionDecl>(D))
+        return FD->isOverloadedOperator() && FD->isImplicit() && FD->isGlobal();
     }
     return false;
   }
diff --git a/clang/lib/StaticAnalyzer/Checkers/MallocChecker.cpp b/clang/lib/StaticAnalyzer/Checkers/MallocChecker.cpp
index 50d4273e48c0..1aa9b824e306 100644
--- a/clang/lib/StaticAnalyzer/Checkers/MallocChecker.cpp
+++ b/clang/lib/StaticAnalyzer/Checkers/MallocChecker.cpp
@@ -1338,8 +1338,7 @@ bool MallocChecker::doesNotFreeMemory(const CallOrObjCMessage *Call,
   }
 
   // If it's not a system call, assume it frees memory.
-  SourceManager &SM = ASTC.getSourceManager();
-  if (!SM.isInSystemHeader(D->getLocation()))
+  if (!Call->isInSystemHeader())
     return false;
 
   // Process C/ObjC functions.
diff --git a/clang/test/Analysis/new.cpp b/clang/test/Analysis/new.cpp
index 8093eff3a1c2..723d033bc794 100644
--- a/clang/test/Analysis/new.cpp
+++ b/clang/test/Analysis/new.cpp
@@ -5,6 +5,21 @@ void clang_analyzer_eval(bool);
 typedef typeof(sizeof(int)) size_t;
 extern "C" void *malloc(size_t);
 
+int someGlobal;
+void testImplicitlyDeclaredGlobalNew() {
+  if (someGlobal != 0)
+    return;
+
+  // This used to crash because the global operator new is being implicitly
+  // declared and it does not have a valid source location. (PR13090)
+  void *x = ::operator new(0);
+  ::operator delete(x);
+
+  // Check that the new/delete did not invalidate someGlobal;
+  clang_analyzer_eval(someGlobal == 0); // expected-warning{{TRUE}}
+}
+
+
 // This is the standard placement new.
 inline void* operator new(size_t, void* __p) throw()
 {