lammps/tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/run.in.min

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# -- Init section --
include system.in.init
# -- Atom definition section --
read_data system.data
# -- Settings Section --
include system.in.settings
# Optional: Make sure the pairwise energies look reasonable:
#pair_write 2 2 1001 r 2.6 16.0 test_tail-tail.dat t-t 0 0
#pair_write 2 3 1001 r 2.6 16.0 test_tail-head.dat t-h 0 0
#pair_write 1 2 1001 r 2.6 16.0 test_int-tail.dat i-t 0 0
#pair_write 1 1 2573 r 2.6 16.0 test_int-int.dat i-i 0 0
#pair_write 1 3 1001 r 2.6 16.0 test_int-head.dat i-h 0 0
#pair_write 3 3 1001 r 2.6 16.0 test_head-head.dat h-h 0 0
# -- Run section --
dump 1 all custom 50 traj_min.lammpstrj id mol type x y z ix iy iz
minimize 1.0e-5 1.0e-7 500 2000
write_restart system_after_min.rst