lammps/tools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.min

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# -------- REQUIREMENTS: ---------
# 1) This example requires the "USER-MISC" package. (Use "make yes-USER-MISC")
# http://lammps.sandia.gov/doc/Section_start.html#start_3
# 2) It also may require additional features and bug fixes for LAMMPS.
# So, after typing "make yes-user-misc" in to the shell, ...
# be sure to download and copy the "additional_lammps_code" from
# http://moltemplate.org (upper-left corner menu)
# 3) Unpack it
# 4) copy the .cpp and .h files to the src folding of your lammps installation.
# 5) Compile LAMMPS.
#
# If LAMMPS complains about an "Invalid pair_style", or "Invalid dihedral_style"
# then you made a mistake in the instructions above.
# -- Init section --
include system.in.init
# -- Atom definition section --
read_data system.data
# -- Settings Section --
include system.in.settings
# -- Run section --
dump 1 all custom 50 traj_min.lammpstrj id mol type x y z ix iy iz
minimize 1.0e-5 1.0e-7 500 2000
write_restart system_after_min.rst