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65 Commits

Author SHA1 Message Date
Axel Kohlmeyer 14e6c126a8
Merge pull request #1314 from charlessievers/OptimizedDynamicalMatrix 
add command to compute the Dynamical Matrix
 2019-02-28 17:08:36 -05:00
Axel Kohlmeyer 5fd033c0a2
add one more false positive required by recent changes 2019-02-28 15:49:48 -05:00
Axel Kohlmeyer 16946d8c6d
integrate dynamical_matrix command into LAMMPS manual 2019-02-28 14:45:07 -05:00
Axel Kohlmeyer 326a97624e
Merge pull request #1317 from ornladios/adios2-master 
USER-ADIOS package with ADIOS 2.x
 2019-02-27 17:24:12 -05:00
Axel Kohlmeyer 9bec93faa9
update spell-checking false positives for USER-ADIOS package 2019-02-26 19:51:18 -05:00
Axel Kohlmeyer d76569c033
Merge pull request #1320 from eofetis/manual-pdf-support 
Add support for Sphinx+PDF+MathJax
 2019-02-22 15:10:13 -05:00
Ryan S. Elliott c193a9aee9 Updated Errors_messages.txt & false_positives.txt 2019-02-14 19:28:18 -06:00
Axel Kohlmeyer 581b7d3543
update list of false positives after docs changes 2019-02-13 09:23:54 -05:00
Axel Kohlmeyer 622eb47902
some small tweaks, fixes for typos, and url corrections for the manual 2019-02-07 01:19:29 -05:00
Axel Kohlmeyer 019e534f80
some small tweaks, fixes for typos, and url corrections for the manual 2019-02-07 01:16:48 -05:00
efetis 4fe6528ed4 Add support for Sphinx+PDF+MathJax 2019-02-06 17:14:50 -08:00
Axel Kohlmeyer 1e3cc7784b update false positives list for spell checking 2019-01-24 11:06:22 -05:00
Steven Vandenbrande ca31147d00 Fix USER-YAFF documentation issues 2019-01-22 14:58:38 +01:00
Axel Kohlmeyer 89ca07c76e Merge branch 'collected-small-changes' into collected-post-stable-patches 2018-12-29 12:05:30 -05:00
Axel Kohlmeyer 5fb8f23cb4 update false positives list for recent manual changes 2018-12-19 02:24:16 -05:00
Axel Kohlmeyer 0ed4da0bf9 Merge branch 'bond/react-delete_atoms' of https://github.com/jrgissing/lammps into collected-post-stable-patches 2018-12-12 00:20:17 -05:00
Axel Kohlmeyer 02bdda0d05 Merge branch 'remove-reax-meam' into collected-post-stable-patches 2018-12-12 00:14:58 -05:00
Axel Kohlmeyer be3c80829a Merge branch 'collected-small-changes' into collected-post-stable-patches 2018-12-12 00:14:41 -05:00
Axel Kohlmeyer 0a610cb482 Merge branch 'sllod' into collected-post-stable-patches 2018-12-12 00:14:33 -05:00
Axel Kohlmeyer f2f7bcfa5a add new false positive 2018-12-11 23:45:27 -05:00
Axel Kohlmeyer d15e4b1546
Merge branch 'master' into remove-reax-meam 2018-12-11 23:31:48 -05:00
Axel Kohlmeyer 1933c2eb5f next chunk of documentation changes for the removal of REAX and MEAM 2018-12-10 14:51:21 -05:00
Axel Kohlmeyer 52a1f257c5 fix typo 2018-12-10 14:19:03 -05:00
jrgissing afaaf442d3 bond/react doc tweaks 2 2018-12-06 21:32:10 -07:00
Axel Kohlmeyer ee82143a29 more false positives to handle 2018-12-03 16:21:18 -05:00
Axel Kohlmeyer aeb7854aca update false positives list for newly added documentation 2018-12-03 16:11:39 -05:00
Axel Kohlmeyer 6be4ce7137 found a new false positive word in docs with spellchecker 2018-11-28 23:14:45 -05:00
Axel Kohlmeyer d1255ab572 we are LAMMPS, not LIGGGHTS 2018-11-22 09:22:09 -05:00
Axel Kohlmeyer 4251c70e93 update list of false positives for spellchecking 2018-11-20 00:08:07 -05:00
Axel Kohlmeyer 440338d769 last round of spelling fixes 2018-08-22 22:35:35 -04:00
Axel Kohlmeyer 0cd71ee582 more false positives 2018-08-22 22:18:35 -04:00
Axel Kohlmeyer 5da714bcc8 fix another source of broken links inserted into processed files 2018-08-22 21:33:40 -04:00
Axel Kohlmeyer 2d6d635ce0 update list of false positives 2018-08-22 21:30:40 -04:00
Axel Kohlmeyer ffb1a9c46a update link in lammps theme for sphinx 2018-08-22 20:36:01 -04:00
Axel Kohlmeyer c8ac88dd87 update link in LAMMPS theme for Sphinx 2018-08-22 19:46:49 -04:00
Richard Berger 9ffd262039 Add CMake target for html documentation 2018-07-27 02:46:36 -04:00
Richard Berger 819e47b69e Add output dir and verbose option to txt2rst 2018-07-27 02:30:28 -04:00
Axel Kohlmeyer 7c7a80b31a restore deleted file 2018-06-18 17:59:22 -04:00
julient31 f409f4ff53 Commit JT 021318 2018-04-26 15:02:15 -06:00
julient31 72d9795d7f Commit Julien 10/19/2017 
- New files for the pair interactions
- New files for the documentation
- Spin orbit coupling via Neel approach
 2018-04-26 14:58:41 -06:00
Axel Kohlmeyer 5863f115dd correctly escape 'a_ ' text, which is not a reference unlike 'a_b ' 2018-01-12 12:26:50 -05:00
Axel Kohlmeyer ed8680d695 suspend support for sphinxcontrib.images 
the sphinxcontrib.image extension was broken with sphinx 16.x.
however, sphinx 15.x breaks with newer version of the multiprocessor module.
so we suspend the thumbnail processing and lift the lock to sphinx 15.x

also, the number of parallel sphinx tasks is can be overridden with SPHINXEXTRA="-j #'.
default is to try use all local CPU cores.
 2017-12-07 15:38:15 -05:00
Axel Kohlmeyer 0c9cd11b4e have the relevant LAMMPS version embedded into top part of the html manual 2017-03-20 18:25:11 -04:00
Richard Berger 621d7d5ce0 Correct off-by-one error in line number reported 2017-03-16 23:05:03 -04:00
Richard Berger efb2a942e0 Add utility to detect duplicate anchors in documentation files 2017-03-16 22:21:12 -04:00
Richard Berger 21be86c423 Fix typos in txt2html 2017-03-07 00:58:03 -05:00
Richard Berger 007f3c66a0 Third batch of spelling fixes in manual 2017-03-07 00:51:31 -05:00
Richard Berger 32708860a9 Add remaining false positives 2017-03-07 00:27:35 -05:00
Richard Berger fc9eebb936 Added spellcheck utility to documentation build 
Uses the sphinxcontrib-spelling extension and requires PyEnchant and
aspell-en to be installed.

Adds the optional make target 'spelling' which produces the file
spelling/output.txt. It contains all words it detects.

Due to the large number of false positives, words in
utils/sphinx-config/false_positives.txt are ignored.
 2017-03-05 21:23:41 -05:00
Axel Kohlmeyer 2cf77ff778 Add support for ebook generation in ePUB and mobi format 2016-10-20 16:16:17 -04:00