Axel Kohlmeyer
054c525842
remove REAX and MEAM from src folder
2018-12-10 12:07:51 -05:00
Axel Kohlmeyer
8b5887bfb1
remove MEAM and REAX from lib folder
2018-12-10 12:05:29 -05:00
Axel Kohlmeyer
fb08d3ea46
ignore MSCG build folder more generally
2018-12-10 11:25:24 -05:00
Axel Kohlmeyer
7d3caaa1a4
step version date for stable release on wednesday
2018-12-10 11:24:35 -05:00
Axel Kohlmeyer
b6b813459b
update example logfiles for USER-DRUDE package
2018-12-10 11:04:52 -05:00
Axel Kohlmeyer
8f95cdcb27
small update to the fix rigid/meso command docs
2018-12-09 16:24:06 -05:00
Axel Kohlmeyer
802bf4bc1f
update .gitignore for recently added files
2018-12-08 15:00:33 -05:00
Axel Kohlmeyer
4078c7897e
fix permissions
2018-12-08 15:00:14 -05:00
Axel Kohlmeyer
e6321e1020
Merge pull request #1246 from akohlmey/next-patch-release
...
Patch release 7 December 2018
2018-12-07 14:15:12 -05:00
Axel Kohlmeyer
0165f18d59
Merge pull request #1241 from akohlmey/collected-small-fixes
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Collected small changes and updates for stable release
2018-12-07 11:28:26 -05:00
Axel Kohlmeyer
c36f8390d2
Merge pull request #1240 from akohlmey/fix-tune-kspace-limits
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Detect fix tune/kspace incompatible configurations
2018-12-07 11:28:02 -05:00
Axel Kohlmeyer
57204a0f66
reformat recently changed paragraphs in the manual
2018-12-07 10:38:01 -05:00
Axel Kohlmeyer
4f00984bbc
Merge branch 'master' into collected-small-fixes
2018-12-07 10:32:33 -05:00
Axel Kohlmeyer
f02eab3990
Merge pull request #1248 from junghans/cmake-plumed
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cmake: USER-PLUMED does not depend on LAPACK anymore
2018-12-07 10:31:18 -05:00
Axel Kohlmeyer
4792ff1dc2
Merge pull request #1247 from gtribello/master
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Changes to manual related to the USER-PLUMED package
2018-12-07 10:30:35 -05:00
Axel Kohlmeyer
998a512143
update log files for USER-UEF
2018-12-07 10:19:34 -05:00
Gareth Tribello
29dcf8348b
No longer require LAPACK and BLAS to compile PLUMED+LAMMPS so removed this statement from docs
2018-12-07 15:16:40 +00:00
Gareth Tribello
1bd81db9b3
Fixed spelling mistakes
2018-12-07 15:15:35 +00:00
Christoph Junghans
a30e1b2670
cmake: USER-PLUMED does not LAPACK anymore
2018-12-07 06:10:29 -07:00
Gareth Tribello
4a4dbc7da5
Added further instructions on building of PLUMED+LAMMPS
2018-12-07 12:49:00 +00:00
Axel Kohlmeyer
0244841b27
auto-request a review from @sjplimp when the LAMMPS version is updated
2018-12-07 06:15:03 -05:00
Axel Kohlmeyer
ee98dc0b96
step version number to 7 December 2018
2018-12-07 06:11:30 -05:00
Axel Kohlmeyer
e61b553bb3
update USER-MOFF log files
2018-12-07 05:54:02 -05:00
Axel Kohlmeyer
f8da830c07
fix new[]/delete mismatches and a memory leak in USER-DIFFRACTION package
2018-12-07 05:51:02 -05:00
Axel Kohlmeyer
20eca799b1
update log files for USER-DIFFRACTION package
2018-12-07 05:50:39 -05:00
Gareth Tribello
d802817cca
Small changes to the documentation for building and using PLUMED
2018-12-07 10:39:10 +00:00
Axel Kohlmeyer
8ce60d8761
update USER-CGSDK and USER-COLVARS log files
2018-12-07 05:03:26 -05:00
Axel Kohlmeyer
c44620f00e
make sure all class pointers in the LAMMPS class are initialized to NULL
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some early use of the LAMMPS class may produce segmentation faults,
if member classes are not yet initialized and their pointers are
pointing to random locations. For NULL we can easily test.
2018-12-07 04:34:00 -05:00
Axel Kohlmeyer
a5f75bbabd
plug memory leaks in USER-CGDNA package pair styles
2018-12-07 04:33:33 -05:00
Axel Kohlmeyer
685a8bfc62
update or add logs for USER-AWPMD, USER-BOCS, and USER-CGDNA
2018-12-07 04:32:46 -05:00
Axel Kohlmeyer
cd0924ca4c
add log files for USER-AWPMD examples
2018-12-07 03:49:46 -05:00
jrgissing
afaaf442d3
bond/react doc tweaks 2
2018-12-06 21:32:10 -07:00
Axel Kohlmeyer
18f7e96e8a
update log files for USER-PLUMED examples
2018-12-06 19:07:36 -05:00
Axel Kohlmeyer
984f415196
fix memory leak in fix plumed
2018-12-06 19:05:39 -05:00
Axel Kohlmeyer
e01ba84fd2
update log files for USER-SCAFACOS
2018-12-06 19:01:20 -05:00
Axel Kohlmeyer
e37436d646
plug memory leak and avoid accessing uninitialized memory in virial computation and properly handle PPPM/Ewald cases that don't compute a virial
2018-12-06 18:54:25 -05:00
Aidan Thompson
00d719459f
Fixed one error
2018-12-04 17:46:31 -07:00
Axel Kohlmeyer
9ee076e4c7
correct formatting of preformatted text
2018-12-04 10:40:31 -05:00
Aidan Thompson
fa7e02ea71
Removed redundant element list from pair_coeff snap syntax
2018-12-03 20:28:01 -07:00
jrgissing
cf3aee9083
bond/react doc tweaks
2018-12-03 20:12:38 -07:00
Axel Kohlmeyer
45b6b4bf52
Merge branch 'python-script-portability' into collected-post-stable-patches
2018-12-03 19:47:37 -05:00
Axel Kohlmeyer
be721fe75a
more Install.py refactoring
2018-12-03 19:47:10 -05:00
Axel Kohlmeyer
4168855ba3
reduce distracting nvcc (or rather ptxas) verbosity
2018-12-03 19:27:03 -05:00
Axel Kohlmeyer
4adbacf8e5
Merge branch 'python-script-portability' into collected-post-stable-patches
2018-12-03 19:14:47 -05:00
Giacomo Fiorin
d603d084c4
Fix typo, whitespace cleanup
2018-12-03 18:12:10 -05:00
Giacomo Fiorin
46c0be57de
Restore deleted deps file (if deletion is intentional, please delete again)
2018-12-03 18:08:27 -05:00
Axel Kohlmeyer
db2c8887cf
Merge branch 'python-script-portability' into collected-post-stable-patches
2018-12-03 17:50:47 -05:00
Axel Kohlmeyer
e5c555fa7d
consolidate shared code from various Install.py files into install_helpers.py
2018-12-03 17:50:20 -05:00
Axel Kohlmeyer
ee82143a29
more false positives to handle
2018-12-03 16:21:18 -05:00
Axel Kohlmeyer
a0bd1bd755
fix typo
2018-12-03 16:12:32 -05:00