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make horizontally aligned image formatting consistent and display "click on" message only with html output
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@ -80,16 +80,23 @@ See the python/README file for instructions on how to run them and the
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source code for individual scripts for comments about what they do.
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Here are screenshots of the vizplotgui_tool.py script in action for
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different visualization package options. Click to see larger images:
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different visualization package options:
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.. image:: img/screenshot_gl.jpg
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:scale: 15%
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.. |pyex1| image:: img/screenshot_gl.jpg
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:width: 24%
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.. image:: img/screenshot_atomeye.jpg
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:scale: 15%
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.. |pyex2| image:: img/screenshot_atomeye.jpg
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:width: 24%
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.. image:: img/screenshot_pymol.jpg
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:scale: 15%
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.. |pyex3| image:: img/screenshot_pymol.jpg
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:width: 24%
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.. |pyex4| image:: img/screenshot_vmd.jpg
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:width: 24%
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|pyex1| |pyex2| |pyex3| |pyex4|
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.. raw:: html
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Click to see larger versions of the images.
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.. image:: img/screenshot_vmd.jpg
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:scale: 15%
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@ -177,16 +177,16 @@ volume (area in 2d) assigned to each processor, as in the following 2d
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diagram where processor sub-domains are shown and particles are
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colored by the processor that owns them.
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.. list-table::
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.. |balance1| image:: img/balance_uniform.jpg
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:width: 32%
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* - .. figure:: img/balance_uniform.jpg
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:scale: 50%
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.. |balance2| image:: img/balance_nonuniform.jpg
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:width: 32%
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- .. figure:: img/balance_nonuniform.jpg
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:scale: 50%
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.. |balance3| image:: img/balance_rcb.jpg
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:width: 32%
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- .. figure:: img/balance_rcb.jpg
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:scale: 50%
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|balance1| |balance2| |balance3|
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The leftmost diagram is the default partitioning of the simulation box
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across processors (one sub-box for each of 16 processors); the middle
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@ -257,8 +257,7 @@ individual lattice points being "above" or "below" the mathematical
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expression for the sinusoidal curve. If a finer lattice were used,
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the sinusoid would appear to be "smoother". Also note the use of the
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"xlat" and "ylat" :doc:`thermo_style <thermo_style>` keywords which
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converts lattice spacings to distance. Click on the image for a
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larger version.
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converts lattice spacings to distance.
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.. code-block:: LAMMPS
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@ -279,6 +278,10 @@ larger version.
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:scale: 50%
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:align: center
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.. raw:: html
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Click on the image for a larger version.
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The *rotate* keyword allows specification of the orientation
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at which molecules are inserted. The axis of rotation is
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determined by the rotation vector (Rx,Ry,Rz) that goes through the
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@ -116,17 +116,17 @@ script to generate the images/movie.
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Here are two sample images, rendered as 1024x1024 JPEG files.
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.. |dump1| image:: img/dump1.jpg
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:width: 48%
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.. |dump2| image:: img/dump2.jpg
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:width: 48%
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|dump1| |dump2|
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.. raw:: html
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Click to see the full-size images:
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.. |dump1| image:: img/dump1.jpg
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:scale: 48%
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.. |dump2| image:: img/dump2.jpg
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:scale: 48%
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|dump1| |dump2|
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Only atoms in the specified group are rendered in the image. The
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:doc:`dump_modify region and thresh <dump_modify>` commands can also
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alter what atoms are included in the image.
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@ -156,16 +156,16 @@ assigned to each processor, as in the following 2d diagram where
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processor sub-domains are shown and atoms are colored by the processor
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that owns them.
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.. list-table::
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.. |balance1| image:: img/balance_uniform.jpg
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:width: 32%
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* - .. figure:: img/balance_uniform.jpg
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:scale: 50%
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.. |balance2| image:: img/balance_nonuniform.jpg
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:width: 32%
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- .. figure:: img/balance_nonuniform.jpg
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:scale: 50%
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.. |balance3| image:: img/balance_rcb.jpg
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:width: 32%
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- .. figure:: img/balance_rcb.jpg
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:scale: 50%
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|balance1| |balance2| |balance3|
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The leftmost diagram is the default partitioning of the simulation box
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across processors (one sub-box for each of 16 processors); the middle
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@ -63,17 +63,22 @@ granular particles when they are close enough to touch the wall. See
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the :doc:`fix wall/region <fix_wall_region>` and :doc:`fix wall/gran <fix_wall_gran>` commands for related kinds of walls for
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non-granular particles and simpler wall geometries, respectively.
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Here are snapshots of example models using this command.
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Corresponding input scripts can be found in examples/granregion.
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Click on the images to see a bigger picture. Movies of these
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simulations are `here on the Movies page <https://lammps.sandia.gov/movies.html#granregion>`_ of the LAMMPS
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web site.
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Here are snapshots of example models using this command. Corresponding
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input scripts can be found in examples/granregion. Movies of these
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simulations are `here on the Movies page <https://lammps.sandia.gov/movies.html#granregion>`_
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of the LAMMPS web site.
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.. image:: img/gran_funnel.png
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:scale: 50%
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.. |wallgran1| image:: img/gran_funnel.png
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:width: 48%
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.. image:: img/gran_mixer.png
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:scale: 50%
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.. |wallgran2| image:: img/gran_mixer.png
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:width: 48%
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|wallgran1| |wallgran2|
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.. raw:: html
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Click on the images to see a bigger picture.
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----------
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@ -392,15 +392,20 @@ barrier.
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To illustrate, here are images from the final snapshot produced by the
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neb_combine.py script run on the dump files produced by the two
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example input scripts in examples/neb. Click on them to see a larger
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image.
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example input scripts in examples/neb.
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.. image:: img/hop1.jpg
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:scale: 50%
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.. image:: img/hop2.jpg
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:scale: 50%
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.. |neb1| image:: img/hop1.jpg
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:width: 48%
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.. |neb2| image:: img/hop2.jpg
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:width: 48%
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|neb1| |neb2|
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.. raw:: html
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Click on them to see a larger image.
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----------
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