git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@2712 f3b2605a-c512-4ea7-a41b-209d697bcdaa

doc/compute_modify.html

@@ -58,9 +58,9 @@ temperature is correctly normalized.
 </P>
 <P>The <I>thermo</I> keyword determines whether the potential energy
 contribution calculated by some <A HREF = "fix.html">fixes</A> is added to the
-potential energy calculated by the compute.  Only the compute of style
+potential energy calculated by the compute.  Currently, only the
-<I>pe</I> uses this option.  See the doc pages for <A HREF = "fix.html">individual
+compute of style <I>pe</I> uses this option.  See the doc pages for
-fixes</A> for details.
+<A HREF = "fix.html">individual fixes</A> for details.
 </P>
 <P><B>Restrictions:</B> none
 </P>

doc/compute_modify.txt

@@ -51,9 +51,9 @@ temperature is correctly normalized.
 
 The {thermo} keyword determines whether the potential energy
 contribution calculated by some "fixes"_fix.html is added to the
-potential energy calculated by the compute.  Only the compute of style
+potential energy calculated by the compute.  Currently, only the
-{pe} uses this option.  See the doc pages for "individual
+compute of style {pe} uses this option.  See the doc pages for
-fixes"_fix.html for details.
+"individual fixes"_fix.html for details.
 
 [Restrictions:] none
 

doc/thermo_style.html

@@ -105,9 +105,8 @@ f_ID keyword and accessing a fix that does time-averaging such as the
 <P>Options invoked by the <A HREF = "thermo_modify.html">thermo_modify</A> command can
 be used to set the one- or multi-line format of the print-out, the
 normalization of thermodynamic output (total values versus per-atom
-values for "extensive quantities, meaning ones which scale with the
+values for extensive quantities (ones which scale with the number of
-number of atoms in the system), and the numeric precision of each
+atoms in the system), and the numeric precision of each printed value.
-printed value.
 </P>
 <P>IMPORTANT NOTE: When you use a "thermo_style" command, all
 thermodynamic settings are restored to their default values, including
@@ -119,8 +118,8 @@ use the thermo_modify command after it.
 
 <P>Several of the thermodynamic quantities require a temperature to be
 computed: "temp", "press", "ke", "etotal", "enthalpy", "pxx etc".  By
-default this is done by using the "thermo_temp" compute which is
+default this is done by using a <I>temperature</I> compute which is created
-created when LAMMPS starts up, as if this command had been issued:
+when LAMMPS starts up, as if this command had been issued:
 </P>
 <PRE>compute thermo_temp all temp 
 </PRE>
@@ -135,7 +134,7 @@ This is done via the <A HREF = "thermo_modify.html">thermo_modify</A> command.
 </P>
 <P>Several of the thermodynamic quantities require a pressure to be
 computed: "press", "enthalpy", "pxx", etc.  By default this is done by
-using the pressure compute which is created when LAMMPS starts up, as
+using a <I>pressure</I> compute which is created when LAMMPS starts up, as
 if this command had been issued:
 </P>
 <PRE>compute thermo_press all pressure thermo_temp 
@@ -150,8 +149,8 @@ that requires a pressure.  This is done via the
 <A HREF = "thermo_modify.html">thermo_modify</A> command.
 </P>
 <P>Several of the thermodynamic quantities require a potential energy to
-be computed: "pe", "etotal", "ebond", etc.  This is done by using the
+be computed: "pe", "etotal", "ebond", etc.  This is done by using a
-"thermo_pe" compute which is created when LAMMPS starts up, as if this
+<I>pe</I> compute which is created when LAMMPS starts up, as if this
 command had been issued:
 </P>
 <PRE>compute thermo_pe all pe 

doc/thermo_style.txt

@@ -99,9 +99,8 @@ f_ID keyword and accessing a fix that does time-averaging such as the
 Options invoked by the "thermo_modify"_thermo_modify.html command can
 be used to set the one- or multi-line format of the print-out, the
 normalization of thermodynamic output (total values versus per-atom
-values for "extensive quantities, meaning ones which scale with the
+values for extensive quantities (ones which scale with the number of
-number of atoms in the system), and the numeric precision of each
+atoms in the system), and the numeric precision of each printed value.
-printed value.
 
 IMPORTANT NOTE: When you use a "thermo_style" command, all
 thermodynamic settings are restored to their default values, including
@@ -113,8 +112,8 @@ use the thermo_modify command after it.
 
 Several of the thermodynamic quantities require a temperature to be
 computed: "temp", "press", "ke", "etotal", "enthalpy", "pxx etc".  By
-default this is done by using the "thermo_temp" compute which is
+default this is done by using a {temperature} compute which is created
-created when LAMMPS starts up, as if this command had been issued:
+when LAMMPS starts up, as if this command had been issued:
 
 compute thermo_temp all temp :pre
 
@@ -129,7 +128,7 @@ This is done via the "thermo_modify"_thermo_modify.html command.
 
 Several of the thermodynamic quantities require a pressure to be
 computed: "press", "enthalpy", "pxx", etc.  By default this is done by
-using the pressure compute which is created when LAMMPS starts up, as
+using a {pressure} compute which is created when LAMMPS starts up, as
 if this command had been issued:
 
 compute thermo_press all pressure thermo_temp :pre
@@ -144,8 +143,8 @@ that requires a pressure.  This is done via the
 "thermo_modify"_thermo_modify.html command.
 
 Several of the thermodynamic quantities require a potential energy to
-be computed: "pe", "etotal", "ebond", etc.  This is done by using the
+be computed: "pe", "etotal", "ebond", etc.  This is done by using a
-"thermo_pe" compute which is created when LAMMPS starts up, as if this
+{pe} compute which is created when LAMMPS starts up, as if this
 command had been issued:
 
 compute thermo_pe all pe :pre