From 9c88bf82039a0886cf4f822bed21f7b4229e2b2f Mon Sep 17 00:00:00 2001 From: sjplimp Date: Fri, 26 Aug 2011 18:53:00 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6826 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/Section_accelerate.html | 3 +++ doc/Section_intro.html | 2 +- doc/Section_intro.txt | 2 +- doc/Section_packages.html | 38 +++++++++++++++--------------- doc/Section_packages.txt | 38 +++++++++++++++--------------- doc/Section_start.html | 17 +++++++------ doc/Section_start.txt | 17 +++++++------ doc/angle_charmm.html | 2 +- doc/angle_charmm.txt | 2 +- doc/angle_class2.html | 6 ++--- doc/angle_class2.txt | 6 ++--- doc/angle_cmm.html | 2 +- doc/angle_cmm.txt | 2 +- doc/angle_cosine.html | 2 +- doc/angle_cosine.txt | 2 +- doc/angle_cosine_delta.html | 2 +- doc/angle_cosine_delta.txt | 2 +- doc/angle_cosine_periodic.html | 2 +- doc/angle_cosine_periodic.txt | 2 +- doc/angle_cosine_shift.html | 4 ++-- doc/angle_cosine_shift.txt | 4 ++-- doc/angle_cosine_shift_exp.html | 4 ++-- doc/angle_cosine_shift_exp.txt | 4 ++-- doc/angle_cosine_squared.html | 2 +- doc/angle_cosine_squared.txt | 2 +- doc/angle_harmonic.html | 2 +- doc/angle_harmonic.txt | 2 +- doc/angle_hybrid.html | 2 +- doc/angle_hybrid.txt | 2 +- doc/angle_style.html | 2 +- doc/angle_style.txt | 2 +- doc/angle_table.html | 2 +- doc/angle_table.txt | 2 +- doc/atom_style.html | 10 ++++---- doc/atom_style.txt | 10 ++++---- doc/bond_class2.html | 2 +- doc/bond_class2.txt | 2 +- doc/bond_fene.html | 2 +- doc/bond_fene.txt | 2 +- doc/bond_fene_expand.html | 2 +- doc/bond_fene_expand.txt | 2 +- doc/bond_harmonic.html | 2 +- doc/bond_harmonic.txt | 2 +- doc/bond_harmonic_shift.html | 4 ++-- doc/bond_harmonic_shift.txt | 4 ++-- doc/bond_harmonic_shift_cut.html | 4 ++-- doc/bond_harmonic_shift_cut.txt | 4 ++-- doc/bond_hybrid.html | 2 +- doc/bond_hybrid.txt | 2 +- doc/bond_morse.html | 2 +- doc/bond_morse.txt | 2 +- doc/bond_nonlinear.html | 2 +- doc/bond_nonlinear.txt | 2 +- doc/bond_quartic.html | 2 +- doc/bond_quartic.txt | 2 +- doc/bond_style.html | 2 +- doc/bond_style.txt | 2 +- doc/bond_table.html | 2 +- doc/bond_table.txt | 2 +- doc/compute_ackland_atom.html | 4 ++-- doc/compute_ackland_atom.txt | 4 ++-- doc/compute_damage_atom.html | 2 +- doc/compute_damage_atom.txt | 2 +- doc/compute_event_displace.html | 2 +- doc/compute_event_displace.txt | 2 +- doc/compute_ke_atom_eff.html | 2 +- doc/compute_ke_atom_eff.txt | 2 +- doc/compute_ke_eff.html | 2 +- doc/compute_ke_eff.txt | 2 +- doc/compute_pe.html | 6 ++--- doc/compute_pe.txt | 6 ++--- doc/compute_pressure.html | 6 ++--- doc/compute_pressure.txt | 6 ++--- doc/compute_temp.html | 6 ++--- doc/compute_temp.txt | 6 ++--- doc/compute_temp_asphere.html | 2 +- doc/compute_temp_asphere.txt | 2 +- doc/compute_temp_deform_eff.html | 2 +- doc/compute_temp_deform_eff.txt | 2 +- doc/compute_temp_eff.html | 2 +- doc/compute_temp_eff.txt | 2 +- doc/compute_temp_partial.html | 6 ++--- doc/compute_temp_partial.txt | 6 ++--- doc/compute_temp_region_eff.html | 2 +- doc/compute_temp_region_eff.txt | 2 +- doc/compute_temp_rotate.html | 4 ++-- doc/compute_temp_rotate.txt | 4 ++-- doc/dihedral_charmm.html | 2 +- doc/dihedral_charmm.txt | 2 +- doc/dihedral_class2.html | 2 +- doc/dihedral_class2.txt | 2 +- doc/dihedral_cosine_shift_exp.html | 4 ++-- doc/dihedral_cosine_shift_exp.txt | 4 ++-- doc/dihedral_harmonic.html | 2 +- doc/dihedral_harmonic.txt | 2 +- doc/dihedral_helix.html | 2 +- doc/dihedral_helix.txt | 2 +- doc/dihedral_hybrid.html | 2 +- doc/dihedral_hybrid.txt | 2 +- doc/dihedral_multi_harmonic.html | 2 +- doc/dihedral_multi_harmonic.txt | 2 +- doc/dihedral_opls.html | 2 +- doc/dihedral_opls.txt | 2 +- doc/dihedral_style.html | 4 ++-- doc/dihedral_style.txt | 4 ++-- doc/dump.html | 2 +- doc/dump.txt | 2 +- doc/fix_addforce.html | 6 ++--- doc/fix_addforce.txt | 6 ++--- doc/fix_addtorque.html | 2 +- doc/fix_addtorque.txt | 2 +- doc/fix_atc.html | 2 +- doc/fix_atc.txt | 2 +- doc/fix_aveforce.html | 6 ++--- doc/fix_aveforce.txt | 6 ++--- doc/fix_bond_break.html | 4 ++-- doc/fix_bond_break.txt | 4 ++-- doc/fix_bond_create.html | 4 ++-- doc/fix_bond_create.txt | 4 ++-- doc/fix_bond_swap.html | 4 ++-- doc/fix_bond_swap.txt | 4 ++-- doc/fix_enforce2d.html | 6 ++--- doc/fix_enforce2d.txt | 6 ++--- doc/fix_freeze.html | 8 +++---- doc/fix_freeze.txt | 8 +++---- doc/fix_gcmc.html | 4 ++-- doc/fix_gcmc.txt | 4 ++-- doc/fix_gravity.html | 6 ++--- doc/fix_gravity.txt | 6 ++--- doc/fix_imd.html | 2 +- doc/fix_imd.txt | 2 +- doc/fix_langevin_eff.html | 2 +- doc/fix_langevin_eff.txt | 2 +- doc/fix_msst.html | 2 +- doc/fix_msst.txt | 2 +- doc/fix_neb.html | 2 +- doc/fix_neb.txt | 2 +- doc/fix_nh.html | 6 ++--- doc/fix_nh.txt | 6 ++--- doc/fix_nh_eff.html | 2 +- doc/fix_nh_eff.txt | 2 +- doc/fix_nph_asphere.html | 4 ++-- doc/fix_nph_asphere.txt | 4 ++-- doc/fix_npt_asphere.html | 4 ++-- doc/fix_npt_asphere.txt | 4 ++-- doc/fix_nve.html | 6 ++--- doc/fix_nve.txt | 6 ++--- doc/fix_nve_asphere.html | 4 ++-- doc/fix_nve_asphere.txt | 4 ++-- doc/fix_nve_eff.html | 2 +- doc/fix_nve_eff.txt | 2 +- doc/fix_nvt_asphere.html | 4 ++-- doc/fix_nvt_asphere.txt | 4 ++-- doc/fix_nvt_sllod_eff.html | 2 +- doc/fix_nvt_sllod_eff.txt | 2 +- doc/fix_poems.html | 2 +- doc/fix_poems.txt | 2 +- doc/fix_pour.html | 2 +- doc/fix_pour.txt | 2 +- doc/fix_qeq_reax.html | 2 +- doc/fix_qeq_reax.txt | 2 +- doc/fix_reax_bonds.html | 4 ++-- doc/fix_reax_bonds.txt | 4 ++-- doc/fix_setforce.html | 6 ++--- doc/fix_setforce.txt | 6 ++--- doc/fix_shake.html | 6 ++--- doc/fix_shake.txt | 6 ++--- doc/fix_smd.html | 2 +- doc/fix_smd.txt | 2 +- doc/fix_srd.html | 2 +- doc/fix_srd.txt | 2 +- doc/fix_temp_berendsen.html | 6 ++--- doc/fix_temp_berendsen.txt | 6 ++--- doc/fix_temp_rescale.html | 6 ++--- doc/fix_temp_rescale.txt | 6 ++--- doc/fix_temp_rescale_eff.html | 2 +- doc/fix_temp_rescale_eff.txt | 2 +- doc/fix_viscous.html | 6 ++--- doc/fix_viscous.txt | 6 ++--- doc/fix_wall_gran.html | 2 +- doc/fix_wall_gran.txt | 2 +- doc/improper_class2.html | 2 +- doc/improper_class2.txt | 2 +- doc/improper_cvff.html | 2 +- doc/improper_cvff.txt | 2 +- doc/improper_harmonic.html | 2 +- doc/improper_harmonic.txt | 2 +- doc/improper_hybrid.html | 2 +- doc/improper_hybrid.txt | 2 +- doc/improper_style.html | 4 ++-- doc/improper_style.txt | 4 ++-- doc/improper_umbrella.html | 2 +- doc/improper_umbrella.txt | 2 +- doc/kspace_style.html | 6 ++--- doc/kspace_style.txt | 6 ++--- doc/neb.html | 2 +- doc/neb.txt | 2 +- doc/pair_adp.html | 2 +- doc/pair_adp.txt | 2 +- doc/pair_airebo.html | 2 +- doc/pair_airebo.txt | 2 +- doc/pair_born.html | 6 ++--- doc/pair_born.txt | 6 ++--- doc/pair_buck.html | 6 ++--- doc/pair_buck.txt | 6 ++--- doc/pair_buck_coul.html | 4 ++-- doc/pair_buck_coul.txt | 4 ++-- doc/pair_charmm.html | 10 ++++---- doc/pair_charmm.txt | 10 ++++---- doc/pair_class2.html | 6 ++--- doc/pair_class2.txt | 6 ++--- doc/pair_cmm.html | 6 ++--- doc/pair_cmm.txt | 6 ++--- doc/pair_colloid.html | 2 +- doc/pair_colloid.txt | 2 +- doc/pair_comb.html | 2 +- doc/pair_comb.txt | 2 +- doc/pair_coul.html | 4 ++-- doc/pair_coul.txt | 4 ++-- doc/pair_dipole.html | 4 ++-- doc/pair_dipole.txt | 4 ++-- doc/pair_dsmc.html | 2 +- doc/pair_dsmc.txt | 2 +- doc/pair_eam.html | 16 ++++++------- doc/pair_eam.txt | 16 ++++++------- doc/pair_eff.html | 2 +- doc/pair_eff.txt | 2 +- doc/pair_eim.html | 2 +- doc/pair_eim.txt | 2 +- doc/pair_gayberne.html | 4 ++-- doc/pair_gayberne.txt | 4 ++-- doc/pair_gran.html | 8 +++---- doc/pair_gran.txt | 8 +++---- doc/pair_gromacs.html | 2 +- doc/pair_gromacs.txt | 2 +- doc/pair_lj.html | 6 ++--- doc/pair_lj.txt | 6 ++--- doc/pair_lj96.html | 2 +- doc/pair_lj96.txt | 2 +- doc/pair_lj_coul.html | 4 ++-- doc/pair_lj_coul.txt | 4 ++-- doc/pair_lj_expand.html | 2 +- doc/pair_lj_expand.txt | 2 +- doc/pair_lj_sf.html | 4 ++-- doc/pair_lj_sf.txt | 4 ++-- doc/pair_lj_smooth.html | 2 +- doc/pair_lj_smooth.txt | 2 +- doc/pair_lubricate.html | 2 +- doc/pair_lubricate.txt | 2 +- doc/pair_meam.html | 6 ++--- doc/pair_meam.txt | 6 ++--- doc/pair_morse.html | 2 +- doc/pair_morse.txt | 2 +- doc/pair_peri.html | 2 +- doc/pair_peri.txt | 2 +- doc/pair_reax_c.html | 4 ++-- doc/pair_reax_c.txt | 4 ++-- doc/pair_resquared.html | 4 ++-- doc/pair_resquared.txt | 4 ++-- doc/pair_sw.html | 2 +- doc/pair_sw.txt | 2 +- doc/pair_tersoff.html | 2 +- doc/pair_tersoff.txt | 2 +- doc/pair_tersoff_zbl.html | 2 +- doc/pair_tersoff_zbl.txt | 2 +- doc/pair_yukawa_colloid.html | 2 +- doc/pair_yukawa_colloid.txt | 2 +- doc/prd.html | 2 +- doc/prd.txt | 2 +- doc/tad.html | 2 +- doc/tad.txt | 2 +- doc/temper.html | 2 +- doc/temper.txt | 2 +- 273 files changed, 515 insertions(+), 506 deletions(-) diff --git a/doc/Section_accelerate.html b/doc/Section_accelerate.html index bdbc463baa..5c5d52ec86 100644 --- a/doc/Section_accelerate.html +++ b/doc/Section_accelerate.html @@ -275,6 +275,9 @@ many timesteps, to run entirely on the GPU (except for inter-processor MPI communication), so that atom-based data (e.g. coordinates, forces) do not have to move back-and-forth between the CPU and GPU. +
  • The speed-up advantage of this approach is typically better when the +number of atoms per GPU is large +
  • Data will stay on the GPU until a timestep where a non-GPU-ized fix or compute is invoked. Whenever a non-GPU operation occurs (fix, compute, output), data automatically moves back to the CPU as needed. diff --git a/doc/Section_intro.html b/doc/Section_intro.html index 1e7001a9d9..ec4e458657 100644 --- a/doc/Section_intro.html +++ b/doc/Section_intro.html @@ -554,7 +554,7 @@ the list. GROMACS pair potentials Mark Stevens (Sandia) lmp2vmd tool Axel Kohlmeyer (U Penn) compute group/group Naveen Michaud-Agrawal (Johns Hopkins U) -CG-CMM user package for coarse-graining Axel Kohlmeyer (U Penn) +USER-CG-CMM package for coarse-graining Axel Kohlmeyer (U Penn) cosine/delta angle potential Axel Kohlmeyer (U Penn) VIM editor add-ons for LAMMPS input scripts Gerolf Ziegenhain pair lubricate Randy Schunk (Sandia) diff --git a/doc/Section_intro.txt b/doc/Section_intro.txt index 4c3a6be8a9..8a53b89bbd 100644 --- a/doc/Section_intro.txt +++ b/doc/Section_intro.txt @@ -539,7 +539,7 @@ fix smd for steered MD : Axel Kohlmeyer (U Penn) GROMACS pair potentials : Mark Stevens (Sandia) lmp2vmd tool : Axel Kohlmeyer (U Penn) compute group/group : Naveen Michaud-Agrawal (Johns Hopkins U) -CG-CMM user package for coarse-graining : Axel Kohlmeyer (U Penn) +USER-CG-CMM package for coarse-graining : Axel Kohlmeyer (U Penn) cosine/delta angle potential : Axel Kohlmeyer (U Penn) VIM editor add-ons for LAMMPS input scripts : Gerolf Ziegenhain pair lubricate : Randy Schunk (Sandia) diff --git a/doc/Section_packages.html b/doc/Section_packages.html index 8f4efd9522..36bfe5c2d7 100644 --- a/doc/Section_packages.html +++ b/doc/Section_packages.html @@ -40,25 +40,25 @@ packages, more details are provided.

    The current list of standard packages is as follows:

    - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + +
    asphere aspherical particles and force fields
    class2 class 2 force fields
    colloid colloidal particle force fields
    dipole point dipole particles and force fields
    gpu GPU-enabled force field styles
    granular force fields and boundary conditions for granular systems
    kspace long-range Ewald and particle-mesh (PPPM) solvers
    manybody metal, 3-body, bond-order potentials
    meam modified embedded atom method (MEAM) potential
    mc Monte Carlo options
    molecule force fields for molecular systems
    opt optimized versions of a few pair potentials
    peri Peridynamics model and potential
    poems coupled rigid body motion
    reax ReaxFF potential
    replica multi-replica methods
    shock methods for MD simulations of shock loading
    srd stochastic rotation dynamics (SRD)
    xtc dump atom snapshots in XTC format
    ASPHERE aspherical particles and force fields
    CLASS2 class 2 force fields
    COLLOID colloidal particle force fields
    DIPOLE point dipole particles and force fields
    GPU GPU-enabled force field styles
    GRANULAR force fields and boundary conditions for granular systems
    KSPACE long-range Ewald and particle-mesh (PPPM) solvers
    MANYBODY metal, 3-body, bond-order potentials
    MEAM modified embedded atom method (MEAM) potential
    MC Monte Carlo options
    MOLECULE force fields for molecular systems
    OPT optimized versions of a few pair potentials
    PERI Peridynamics model and potential
    POEMS coupled rigid body motion
    REAX ReaxFF potential
    REPLICA multi-replica methods
    SHOCK methods for MD simulations of shock loading
    SRD stochastic rotation dynamics (SRD)
    XTC dump atom snapshots in XTC format
    diff --git a/doc/Section_packages.txt b/doc/Section_packages.txt index aabfd1674b..0327c26f52 100644 --- a/doc/Section_packages.txt +++ b/doc/Section_packages.txt @@ -35,25 +35,25 @@ packages, more details are provided. The current list of standard packages is as follows: -asphere : aspherical particles and force fields -class2 : class 2 force fields -colloid : colloidal particle force fields -dipole : point dipole particles and force fields -gpu : GPU-enabled force field styles -granular : force fields and boundary conditions for granular systems -kspace : long-range Ewald and particle-mesh (PPPM) solvers -manybody : metal, 3-body, bond-order potentials -meam : modified embedded atom method (MEAM) potential -mc : Monte Carlo options -molecule : force fields for molecular systems -opt : optimized versions of a few pair potentials -peri : Peridynamics model and potential -poems : coupled rigid body motion -reax : ReaxFF potential -replica : multi-replica methods -shock : methods for MD simulations of shock loading -srd : stochastic rotation dynamics (SRD) -xtc : dump atom snapshots in XTC format +ASPHERE : aspherical particles and force fields +CLASS2 : class 2 force fields +COLLOID : colloidal particle force fields +DIPOLE : point dipole particles and force fields +GPU : GPU-enabled force field styles +GRANULAR : force fields and boundary conditions for granular systems +KSPACE : long-range Ewald and particle-mesh (PPPM) solvers +MANYBODY : metal, 3-body, bond-order potentials +MEAM : modified embedded atom method (MEAM) potential +MC : Monte Carlo options +MOLECULE : force fields for molecular systems +OPT : optimized versions of a few pair potentials +PERI : Peridynamics model and potential +POEMS : coupled rigid body motion +REAX : ReaxFF potential +REPLICA : multi-replica methods +SHOCK : methods for MD simulations of shock loading +SRD : stochastic rotation dynamics (SRD) +XTC : dump atom snapshots in XTC format :tb(s=:) :line diff --git a/doc/Section_start.html b/doc/Section_start.html index 09c0fb8fa7..ef27205304 100644 --- a/doc/Section_start.html +++ b/doc/Section_start.html @@ -579,15 +579,18 @@ of simulations. For some packages, this will keep you from having to build auxiliary libraries (see below), and will also produce a smaller executable which may run a bit faster.

    -

    By default, LAMMPS includes only the "kspace", "manybody", and -"molecule" packages. +

    When you download a LAMMPS tarball, these packages are pre-installed +in the src directory: KSPACE, MANYBODY,MOLECULE. When you download +LAMMPS source files from the SVN or Git repositories, no packages are +pre-installed.

    Packages are included or excluded by typing "make yes-name" or "make -no-name", where "name" is the name of the package. You can also type -"make yes-standard", "make no-standard", "make yes-user", "make -no-user", "make yes-all" or "make no-all" to include/exclude various -sets of packages. Type "make package" to see the all of the -package-related make options. +no-name", where "name" is the name of the package in lower-case, e.g. +name = kspace for the KSPACE package or name = user-atc for the +USER-ATC package. You can also type "make yes-standard", "make +no-standard", "make yes-user", "make no-user", "make yes-all" or "make +no-all" to include/exclude various sets of packages. Type "make +package" to see the all of the package-related make options.

    IMPORTANT NOTE: Inclusion/exclusion of a package works by simply moving files back and forth between the main src directory and diff --git a/doc/Section_start.txt b/doc/Section_start.txt index 7435bd2047..5b8e082868 100644 --- a/doc/Section_start.txt +++ b/doc/Section_start.txt @@ -574,15 +574,18 @@ of simulations. For some packages, this will keep you from having to build auxiliary libraries (see below), and will also produce a smaller executable which may run a bit faster. -By default, LAMMPS includes only the "kspace", "manybody", and -"molecule" packages. +When you download a LAMMPS tarball, these packages are pre-installed +in the src directory: KSPACE, MANYBODY,MOLECULE. When you download +LAMMPS source files from the SVN or Git repositories, no packages are +pre-installed. Packages are included or excluded by typing "make yes-name" or "make -no-name", where "name" is the name of the package. You can also type -"make yes-standard", "make no-standard", "make yes-user", "make -no-user", "make yes-all" or "make no-all" to include/exclude various -sets of packages. Type "make package" to see the all of the -package-related make options. +no-name", where "name" is the name of the package in lower-case, e.g. +name = kspace for the KSPACE package or name = user-atc for the +USER-ATC package. You can also type "make yes-standard", "make +no-standard", "make yes-user", "make no-user", "make yes-all" or "make +no-all" to include/exclude various sets of packages. Type "make +package" to see the all of the package-related make options. IMPORTANT NOTE: Inclusion/exclusion of a package works by simply moving files back and forth between the main src directory and diff --git a/doc/angle_charmm.html b/doc/angle_charmm.html index 2b3dddbfe4..94c0e3bcf9 100644 --- a/doc/angle_charmm.html +++ b/doc/angle_charmm.html @@ -49,7 +49,7 @@ internally; hence the units of K are in energy/radian^2.

    Restrictions:

    This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/angle_charmm.txt b/doc/angle_charmm.txt index a3e06ffd6d..13cdc03f88 100644 --- a/doc/angle_charmm.txt +++ b/doc/angle_charmm.txt @@ -46,7 +46,7 @@ internally; hence the units of K are in energy/radian^2. [Restrictions:] This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/angle_class2.html b/doc/angle_class2.html index 65e5523428..c2aea849a5 100644 --- a/doc/angle_class2.html +++ b/doc/angle_class2.html @@ -80,9 +80,9 @@ same value from the Ea formula.

    Restrictions:

    -

    This angle style can only be used if LAMMPS was built with the -"class2" package. See the Making LAMMPS -section for more info on packages. +

    This angle style can only be used if LAMMPS was built with the CLASS2 +package. See the Making LAMMPS section +for more info on packages.

    Related commands:

    diff --git a/doc/angle_class2.txt b/doc/angle_class2.txt index b63ea798b9..93e2ea25ed 100644 --- a/doc/angle_class2.txt +++ b/doc/angle_class2.txt @@ -77,9 +77,9 @@ same value from the Ea formula. [Restrictions:] -This angle style can only be used if LAMMPS was built with the -"class2" package. See the "Making LAMMPS"_Section_start.html#start_3 -section for more info on packages. +This angle style can only be used if LAMMPS was built with the CLASS2 +package. See the "Making LAMMPS"_Section_start.html#start_3 section +for more info on packages. [Related commands:] diff --git a/doc/angle_cmm.html b/doc/angle_cmm.html index cdb93122f6..c78e6ac4d6 100644 --- a/doc/angle_cmm.html +++ b/doc/angle_cmm.html @@ -52,7 +52,7 @@ internally; hence the units of K are in energy/radian^2.

    Restrictions:

    This angle style can only be used if LAMMPS was built with the -"user-cg-cmm" package. See the Making +"user-cgCMM package. See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/angle_cmm.txt b/doc/angle_cmm.txt index bbedf8b0e7..10d42f033a 100644 --- a/doc/angle_cmm.txt +++ b/doc/angle_cmm.txt @@ -49,7 +49,7 @@ internally; hence the units of K are in energy/radian^2. [Restrictions:] This angle style can only be used if LAMMPS was built with the -"user-cg-cmm" package. See the "Making +"user-cgCMM package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/angle_cosine.html b/doc/angle_cosine.html index c4075bd916..3321405fb6 100644 --- a/doc/angle_cosine.html +++ b/doc/angle_cosine.html @@ -38,7 +38,7 @@ or read_restart commands:

    Restrictions:

    This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/angle_cosine.txt b/doc/angle_cosine.txt index 19d4fedd81..a2fbabf985 100644 --- a/doc/angle_cosine.txt +++ b/doc/angle_cosine.txt @@ -35,7 +35,7 @@ K (energy) :ul [Restrictions:] This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/angle_cosine_delta.html b/doc/angle_cosine_delta.html index 22927d7a92..9bfd85ea09 100644 --- a/doc/angle_cosine_delta.html +++ b/doc/angle_cosine_delta.html @@ -43,7 +43,7 @@ internally.

    Restrictions:

    This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/angle_cosine_delta.txt b/doc/angle_cosine_delta.txt index 95c7da3a89..57de081f84 100644 --- a/doc/angle_cosine_delta.txt +++ b/doc/angle_cosine_delta.txt @@ -40,7 +40,7 @@ internally. [Restrictions:] This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/angle_cosine_periodic.html b/doc/angle_cosine_periodic.html index b5d316fc2b..5e409b0250 100644 --- a/doc/angle_cosine_periodic.html +++ b/doc/angle_cosine_periodic.html @@ -51,7 +51,7 @@ geometry.

    Restrictions:

    This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/angle_cosine_periodic.txt b/doc/angle_cosine_periodic.txt index 024c914ad1..a5fb88fdb8 100644 --- a/doc/angle_cosine_periodic.txt +++ b/doc/angle_cosine_periodic.txt @@ -48,7 +48,7 @@ geometry. [Restrictions:] This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/angle_cosine_shift.html b/doc/angle_cosine_shift.html index 7ddfdd924f..8f97069f79 100644 --- a/doc/angle_cosine_shift.html +++ b/doc/angle_cosine_shift.html @@ -41,8 +41,8 @@ or read_restart commands:

    Restrictions:

    This angle style can only be used if LAMMPS was built with the -"user-misc" package. See the Making -LAMMPS section for more info on packages. +USER-MISC package. See the Making LAMMPS +section for more info on packages.

    Related commands:

    diff --git a/doc/angle_cosine_shift.txt b/doc/angle_cosine_shift.txt index e17813bc21..e7c6417185 100644 --- a/doc/angle_cosine_shift.txt +++ b/doc/angle_cosine_shift.txt @@ -38,8 +38,8 @@ theta (angle) :ul [Restrictions:] This angle style can only be used if LAMMPS was built with the -"user-misc" package. See the "Making -LAMMPS"_Section_start.html#start_3 section for more info on packages. +USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3 +section for more info on packages. [Related commands:] diff --git a/doc/angle_cosine_shift_exp.html b/doc/angle_cosine_shift_exp.html index cd4dea4ce6..ceccb16b8e 100644 --- a/doc/angle_cosine_shift_exp.html +++ b/doc/angle_cosine_shift_exp.html @@ -53,8 +53,8 @@ or read_restart commands:

    Restrictions:

    This angle style can only be used if LAMMPS was built with the -"user-misc" package. See the Making -LAMMPS section for more info on packages. +USER-MISC package. See the Making LAMMPS +section for more info on packages.

    Related commands:

    diff --git a/doc/angle_cosine_shift_exp.txt b/doc/angle_cosine_shift_exp.txt index 9e52466d6e..12612a5337 100644 --- a/doc/angle_cosine_shift_exp.txt +++ b/doc/angle_cosine_shift_exp.txt @@ -50,8 +50,8 @@ A (real number) :ul [Restrictions:] This angle style can only be used if LAMMPS was built with the -"user-misc" package. See the "Making -LAMMPS"_Section_start.html#start_3 section for more info on packages. +USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3 +section for more info on packages. [Related commands:] diff --git a/doc/angle_cosine_squared.html b/doc/angle_cosine_squared.html index 01b6695676..2b888d40e6 100644 --- a/doc/angle_cosine_squared.html +++ b/doc/angle_cosine_squared.html @@ -43,7 +43,7 @@ internally.

    Restrictions:

    This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/angle_cosine_squared.txt b/doc/angle_cosine_squared.txt index edfbfb87c6..383c0b3025 100644 --- a/doc/angle_cosine_squared.txt +++ b/doc/angle_cosine_squared.txt @@ -40,7 +40,7 @@ internally. [Restrictions:] This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/angle_harmonic.html b/doc/angle_harmonic.html index c346de08e2..2094fb2cc7 100644 --- a/doc/angle_harmonic.html +++ b/doc/angle_harmonic.html @@ -43,7 +43,7 @@ internally; hence the units of K are in energy/radian^2.

    Restrictions: none

    This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/angle_harmonic.txt b/doc/angle_harmonic.txt index 99c3065c44..92c318dc25 100644 --- a/doc/angle_harmonic.txt +++ b/doc/angle_harmonic.txt @@ -40,7 +40,7 @@ internally; hence the units of K are in energy/radian^2. [Restrictions:] none This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/angle_hybrid.html b/doc/angle_hybrid.html index 5e0bd97c1f..bd7ff2db01 100644 --- a/doc/angle_hybrid.html +++ b/doc/angle_hybrid.html @@ -77,7 +77,7 @@ for specific angle types.

    Restrictions:

    This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Unlike other angle styles, the hybrid angle style does not store angle diff --git a/doc/angle_hybrid.txt b/doc/angle_hybrid.txt index 79c776ba64..2996d3ddb8 100644 --- a/doc/angle_hybrid.txt +++ b/doc/angle_hybrid.txt @@ -74,7 +74,7 @@ for specific angle types. [Restrictions:] This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. Unlike other angle styles, the hybrid angle style does not store angle diff --git a/doc/angle_style.html b/doc/angle_style.html index 3edbe63e26..73e016b001 100644 --- a/doc/angle_style.html +++ b/doc/angle_style.html @@ -83,7 +83,7 @@ page.

    Angle styles can only be set for atom_styles that allow angles to be defined.

    -

    Most angle styles are part of the "molecular" package. They are only +

    Most angle styles are part of the MOLECULAR package. They are only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info on packages. The doc pages for individual bond potentials tell if it is part of a diff --git a/doc/angle_style.txt b/doc/angle_style.txt index e5faffa666..ec4f923079 100644 --- a/doc/angle_style.txt +++ b/doc/angle_style.txt @@ -81,7 +81,7 @@ page"_Section_commands.html#cmd_5. Angle styles can only be set for atom_styles that allow angles to be defined. -Most angle styles are part of the "molecular" package. They are only +Most angle styles are part of the MOLECULAR package. They are only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. The doc pages for individual bond potentials tell if it is part of a diff --git a/doc/angle_table.html b/doc/angle_table.html index 5592e6cad7..2b1bfb1654 100644 --- a/doc/angle_table.html +++ b/doc/angle_table.html @@ -124,7 +124,7 @@ one that matches the specified keyword.

    Restrictions:

    This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/angle_table.txt b/doc/angle_table.txt index 2c7c2d7475..eaee179682 100644 --- a/doc/angle_table.txt +++ b/doc/angle_table.txt @@ -121,7 +121,7 @@ one that matches the specified keyword. [Restrictions:] This angle style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/atom_style.html b/doc/atom_style.html index f321121883..296665e080 100644 --- a/doc/atom_style.html +++ b/doc/atom_style.html @@ -124,12 +124,12 @@ section. read_data or create_box command.

    The angle, bond, full, and molecular styles are part of the -"molecular" package. The dipole style is part of the "dipole" +MOLECULAR package. The dipole style is part of the "dipole" package. The ellipsoid style is part of the "asphere" package. The -peri style is part of the "peri" package for Peridynamics. The -electron style is part of the "user-eff" package for electronic -force fields. The wavepacket style is part of the -"user-awpmd" package for the antisymmetrized wave packet MD +peri style is part of the PERI package for Peridynamics. The +electron style is part of the USER-EFF package for electronic force +fields. The wavepacket style is part of the +USER-AWPMD package for the antisymmetrized wave packet MD method. They are only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info. diff --git a/doc/atom_style.txt b/doc/atom_style.txt index 0dcf1e8e50..c65eab7bb3 100644 --- a/doc/atom_style.txt +++ b/doc/atom_style.txt @@ -120,12 +120,12 @@ This command cannot be used after the simulation box is defined by a "read_data"_read_data.html or "create_box"_create_box.html command. The {angle}, {bond}, {full}, and {molecular} styles are part of the -"molecular" package. The {dipole} style is part of the "dipole" +MOLECULAR package. The {dipole} style is part of the "dipole" package. The {ellipsoid} style is part of the "asphere" package. The -{peri} style is part of the "peri" package for Peridynamics. The -{electron} style is part of the "user-eff" package for "electronic -force fields"_pair_eff.html. The {wavepacket} style is part of the -"user-awpmd" package for the "antisymmetrized wave packet MD +{peri} style is part of the PERI package for Peridynamics. The +{electron} style is part of the USER-EFF package for "electronic force +fields"_pair_eff.html. The {wavepacket} style is part of the +USER-AWPMD package for the "antisymmetrized wave packet MD method"_pair_awpmd.html. They are only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/bond_class2.html b/doc/bond_class2.html index 2de46dc2fd..b560a514dc 100644 --- a/doc/bond_class2.html +++ b/doc/bond_class2.html @@ -42,7 +42,7 @@ or read_restart commands:

    Restrictions:

    -

    This bond style can only be used if LAMMPS was built with the "class2" +

    This bond style can only be used if LAMMPS was built with the CLASS2 package. See the Making LAMMPS section for more info on packages.

    diff --git a/doc/bond_class2.txt b/doc/bond_class2.txt index 2e596a083b..855be7b918 100644 --- a/doc/bond_class2.txt +++ b/doc/bond_class2.txt @@ -39,7 +39,7 @@ K4 (energy/distance^4) :ul [Restrictions:] -This bond style can only be used if LAMMPS was built with the "class2" +This bond style can only be used if LAMMPS was built with the CLASS2 package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. diff --git a/doc/bond_fene.html b/doc/bond_fene.html index fce83ddff9..6076d3cdb0 100644 --- a/doc/bond_fene.html +++ b/doc/bond_fene.html @@ -45,7 +45,7 @@ or read_restart commands:

    Restrictions:

    This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    You typically should specify special_bonds fene diff --git a/doc/bond_fene.txt b/doc/bond_fene.txt index 1c15f24aee..6a6a40acd2 100644 --- a/doc/bond_fene.txt +++ b/doc/bond_fene.txt @@ -42,7 +42,7 @@ sigma (distance) :ul [Restrictions:] This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. You typically should specify "special_bonds fene"_special_bonds.html" diff --git a/doc/bond_fene_expand.html b/doc/bond_fene_expand.html index e8f6f2522e..da9b2e2da8 100644 --- a/doc/bond_fene_expand.html +++ b/doc/bond_fene_expand.html @@ -50,7 +50,7 @@ or read_restart commands:

    Restrictions:

    This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    You typically should specify special_bonds fene diff --git a/doc/bond_fene_expand.txt b/doc/bond_fene_expand.txt index c4a535dc8d..011d6321a6 100644 --- a/doc/bond_fene_expand.txt +++ b/doc/bond_fene_expand.txt @@ -47,7 +47,7 @@ delta (distance) :ul [Restrictions:] This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. You typically should specify "special_bonds fene"_special_bonds.html" diff --git a/doc/bond_harmonic.html b/doc/bond_harmonic.html index bc1176af6e..efb2d26abf 100644 --- a/doc/bond_harmonic.html +++ b/doc/bond_harmonic.html @@ -40,7 +40,7 @@ or read_restart commands:

    Restrictions:

    This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/bond_harmonic.txt b/doc/bond_harmonic.txt index 5dc87e5d2a..658c87378e 100644 --- a/doc/bond_harmonic.txt +++ b/doc/bond_harmonic.txt @@ -37,7 +37,7 @@ r0 (distance) :ul [Restrictions:] This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/bond_harmonic_shift.html b/doc/bond_harmonic_shift.html index 08e7a2d539..8394ebf850 100644 --- a/doc/bond_harmonic_shift.html +++ b/doc/bond_harmonic_shift.html @@ -45,8 +45,8 @@ or read_restart commands:

    Restrictions:

    This bond style can only be used if LAMMPS was built with the -"user-misc" package. See the Making -LAMMPS section for more info on packages. +USER-MISC package. See the Making LAMMPS +section for more info on packages.

    Related commands:

    diff --git a/doc/bond_harmonic_shift.txt b/doc/bond_harmonic_shift.txt index ca0d33ba36..4bef45dd1b 100644 --- a/doc/bond_harmonic_shift.txt +++ b/doc/bond_harmonic_shift.txt @@ -40,8 +40,8 @@ rc (distance) :ul [Restrictions:] This bond style can only be used if LAMMPS was built with the -"user-misc" package. See the "Making -LAMMPS"_Section_start.html#start_3 section for more info on packages. +USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3 +section for more info on packages. [Related commands:] diff --git a/doc/bond_harmonic_shift_cut.html b/doc/bond_harmonic_shift_cut.html index 83d6ff1545..2142fc5f8f 100644 --- a/doc/bond_harmonic_shift_cut.html +++ b/doc/bond_harmonic_shift_cut.html @@ -43,8 +43,8 @@ or read_restart commands:

    Restrictions:

    This bond style can only be used if LAMMPS was built with the -"user-misc" package. See the Making -LAMMPS section for more info on packages. +USER-MISC package. See the Making LAMMPS +section for more info on packages.

    Related commands:

    diff --git a/doc/bond_harmonic_shift_cut.txt b/doc/bond_harmonic_shift_cut.txt index f5a8d3488e..ea9de8e930 100644 --- a/doc/bond_harmonic_shift_cut.txt +++ b/doc/bond_harmonic_shift_cut.txt @@ -40,8 +40,8 @@ rc (distance) :ul [Restrictions:] This bond style can only be used if LAMMPS was built with the -"user-misc" package. See the "Making -LAMMPS"_Section_start.html#start_3 section for more info on packages. +USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3 +section for more info on packages. [Related commands:] diff --git a/doc/bond_hybrid.html b/doc/bond_hybrid.html index 4dd3b380f3..b9073bd9d1 100644 --- a/doc/bond_hybrid.html +++ b/doc/bond_hybrid.html @@ -60,7 +60,7 @@ bond types.

    Restrictions:

    This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Unlike other bond styles, the hybrid bond style does not store bond diff --git a/doc/bond_hybrid.txt b/doc/bond_hybrid.txt index 11d77f494a..f4a9959229 100644 --- a/doc/bond_hybrid.txt +++ b/doc/bond_hybrid.txt @@ -57,7 +57,7 @@ bond types. [Restrictions:] This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. Unlike other bond styles, the hybrid bond style does not store bond diff --git a/doc/bond_morse.html b/doc/bond_morse.html index 6cd8d70bc6..e826924044 100644 --- a/doc/bond_morse.html +++ b/doc/bond_morse.html @@ -41,7 +41,7 @@ or read_restart commands:

    Restrictions:

    This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/bond_morse.txt b/doc/bond_morse.txt index 22a075c7f6..be9c006654 100644 --- a/doc/bond_morse.txt +++ b/doc/bond_morse.txt @@ -38,7 +38,7 @@ r0 (distance) :ul [Restrictions:] This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/bond_nonlinear.html b/doc/bond_nonlinear.html index be0cdc0978..06fd7cb456 100644 --- a/doc/bond_nonlinear.html +++ b/doc/bond_nonlinear.html @@ -41,7 +41,7 @@ or read_restart commands:

    Restrictions:

    This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/bond_nonlinear.txt b/doc/bond_nonlinear.txt index 8f4437303a..2cd41962ec 100644 --- a/doc/bond_nonlinear.txt +++ b/doc/bond_nonlinear.txt @@ -38,7 +38,7 @@ lamda (distance) :ul [Restrictions:] This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/bond_quartic.html b/doc/bond_quartic.html index 5bbffc0320..824c467164 100644 --- a/doc/bond_quartic.html +++ b/doc/bond_quartic.html @@ -76,7 +76,7 @@ delete_bonds all bond 0 remove

    Restrictions:

    This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    The quartic style requires that special_bonds diff --git a/doc/bond_quartic.txt b/doc/bond_quartic.txt index 5cb2639b3f..068defb546 100644 --- a/doc/bond_quartic.txt +++ b/doc/bond_quartic.txt @@ -73,7 +73,7 @@ delete_bonds all bond 0 remove :pre [Restrictions:] This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. The {quartic} style requires that "special_bonds"_special_bonds.html diff --git a/doc/bond_style.html b/doc/bond_style.html index 5be22aa834..22021efc56 100644 --- a/doc/bond_style.html +++ b/doc/bond_style.html @@ -92,7 +92,7 @@ page.

    Bond styles can only be set for atom styles that allow bonds to be defined.

    -

    Most bond styles are part of the "molecular" package. They are only +

    Most bond styles are part of the MOLECULAR package. They are only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info on packages. The doc pages for individual bond potentials tell if it is part of a diff --git a/doc/bond_style.txt b/doc/bond_style.txt index 953a764cea..f89edc2963 100644 --- a/doc/bond_style.txt +++ b/doc/bond_style.txt @@ -89,7 +89,7 @@ page"_Section_commands.html#cmd_5. Bond styles can only be set for atom styles that allow bonds to be defined. -Most bond styles are part of the "molecular" package. They are only +Most bond styles are part of the MOLECULAR package. They are only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. The doc pages for individual bond potentials tell if it is part of a diff --git a/doc/bond_table.html b/doc/bond_table.html index 319bcbba7c..29ec7bc948 100644 --- a/doc/bond_table.html +++ b/doc/bond_table.html @@ -121,7 +121,7 @@ one that matches the specified keyword.

    Restrictions:

    This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/bond_table.txt b/doc/bond_table.txt index 9dd243c467..c02b71e866 100644 --- a/doc/bond_table.txt +++ b/doc/bond_table.txt @@ -118,7 +118,7 @@ one that matches the specified keyword. [Restrictions:] This bond style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/compute_ackland_atom.html b/doc/compute_ackland_atom.html index 31abcf1f93..60730075ee 100644 --- a/doc/compute_ackland_atom.html +++ b/doc/compute_ackland_atom.html @@ -58,8 +58,8 @@ of LAMMPS output options.

    Restrictions:

    -

    This compute is part of the "user-misc" package. It is only enabled -if LAMMPS was built with that package. See the Making +

    This compute is part of the USER-MISC package. It is only enabled if +LAMMPS was built with that package. See the Making LAMMPS section for more info.

    Related commands: diff --git a/doc/compute_ackland_atom.txt b/doc/compute_ackland_atom.txt index 99991c7988..8722cf30e0 100644 --- a/doc/compute_ackland_atom.txt +++ b/doc/compute_ackland_atom.txt @@ -55,8 +55,8 @@ of LAMMPS output options. [Restrictions:] -This compute is part of the "user-misc" package. It is only enabled -if LAMMPS was built with that package. See the "Making +This compute is part of the USER-MISC package. It is only enabled if +LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. [Related commands:] diff --git a/doc/compute_damage_atom.html b/doc/compute_damage_atom.html index b15291a14d..b5e0d03d89 100644 --- a/doc/compute_damage_atom.html +++ b/doc/compute_damage_atom.html @@ -45,7 +45,7 @@ above.

    Restrictions:

    -

    This compute is part of the "peri" package. It is only enabled if +

    This compute is part of the PERI package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/compute_damage_atom.txt b/doc/compute_damage_atom.txt index 830caa9334..104cf22b54 100644 --- a/doc/compute_damage_atom.txt +++ b/doc/compute_damage_atom.txt @@ -42,7 +42,7 @@ above. [Restrictions:] -This compute is part of the "peri" package. It is only enabled if +This compute is part of the PERI package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/compute_event_displace.html b/doc/compute_event_displace.html index 66a3d841c9..ae63a96bb9 100644 --- a/doc/compute_event_displace.html +++ b/doc/compute_event_displace.html @@ -54,7 +54,7 @@ scalar value will be a 0 or 1 as explained above.

    Restrictions:

    -

    This command can only be used if LAMMPS was built with the "replica" +

    This command can only be used if LAMMPS was built with the REPLICA package. See the Making LAMMPS section for more info on packages.

    diff --git a/doc/compute_event_displace.txt b/doc/compute_event_displace.txt index 2b84eafab2..7b26d3120e 100644 --- a/doc/compute_event_displace.txt +++ b/doc/compute_event_displace.txt @@ -51,7 +51,7 @@ scalar value will be a 0 or 1 as explained above. [Restrictions:] -This command can only be used if LAMMPS was built with the "replica" +This command can only be used if LAMMPS was built with the REPLICA package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. diff --git a/doc/compute_ke_atom_eff.html b/doc/compute_ke_atom_eff.html index 4bd6b6f957..19ffb3f77c 100644 --- a/doc/compute_ke_atom_eff.html +++ b/doc/compute_ke_atom_eff.html @@ -69,7 +69,7 @@ output options.

    Restrictions:

    -

    This compute is part of the "user-eff" package. It is only enabled if +

    This compute is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/compute_ke_atom_eff.txt b/doc/compute_ke_atom_eff.txt index cb69fc5a86..00c32be622 100644 --- a/doc/compute_ke_atom_eff.txt +++ b/doc/compute_ke_atom_eff.txt @@ -66,7 +66,7 @@ The per-atom vector values will be in energy "units"_units.html. [Restrictions:] -This compute is part of the "user-eff" package. It is only enabled if +This compute is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/compute_ke_eff.html b/doc/compute_ke_eff.html index 3b0d55b2df..2fa318f8a6 100644 --- a/doc/compute_ke_eff.html +++ b/doc/compute_ke_eff.html @@ -72,7 +72,7 @@ scalar value will be in energy units.

    Restrictions:

    -

    This compute is part of the "user-eff" package. It is only enabled if +

    This compute is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/compute_ke_eff.txt b/doc/compute_ke_eff.txt index e5c0216db3..2ebe435dff 100644 --- a/doc/compute_ke_eff.txt +++ b/doc/compute_ke_eff.txt @@ -69,7 +69,7 @@ scalar value will be in energy "units"_units.html. [Restrictions:] -This compute is part of the "user-eff" package. It is only enabled if +This compute is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/compute_pe.html b/doc/compute_pe.html index f86c8d8bd7..96a25eb42a 100644 --- a/doc/compute_pe.html +++ b/doc/compute_pe.html @@ -65,9 +65,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/compute_pe.txt b/doc/compute_pe.txt index 17d0cc0e23..46d54268e1 100644 --- a/doc/compute_pe.txt +++ b/doc/compute_pe.txt @@ -61,9 +61,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/compute_pressure.html b/doc/compute_pressure.html index 95f7eeebc4..53cc3132cb 100644 --- a/doc/compute_pressure.html +++ b/doc/compute_pressure.html @@ -95,9 +95,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/compute_pressure.txt b/doc/compute_pressure.txt index c8dafd229f..28d77dd17d 100644 --- a/doc/compute_pressure.txt +++ b/doc/compute_pressure.txt @@ -91,9 +91,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/compute_temp.html b/doc/compute_temp.html index d93a945e14..6005da58da 100644 --- a/doc/compute_temp.html +++ b/doc/compute_temp.html @@ -75,9 +75,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/compute_temp.txt b/doc/compute_temp.txt index 3ead16acaa..7915e86835 100644 --- a/doc/compute_temp.txt +++ b/doc/compute_temp.txt @@ -71,9 +71,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/compute_temp_asphere.html b/doc/compute_temp_asphere.html index 64815209b2..59b32f6951 100644 --- a/doc/compute_temp_asphere.html +++ b/doc/compute_temp_asphere.html @@ -137,7 +137,7 @@ vector values will be in energy units.

    Restrictions:

    -

    This compute is part of the "asphere" package. It is only enabled if +

    This compute is part of the ASPHERE package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/compute_temp_asphere.txt b/doc/compute_temp_asphere.txt index 3be406ffb0..019c1f72c7 100755 --- a/doc/compute_temp_asphere.txt +++ b/doc/compute_temp_asphere.txt @@ -129,7 +129,7 @@ vector values will be in energy "units"_units.html. [Restrictions:] -This compute is part of the "asphere" package. It is only enabled if +This compute is part of the ASPHERE package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/compute_temp_deform_eff.html b/doc/compute_temp_deform_eff.html index d366492193..6331c8e915 100644 --- a/doc/compute_temp_deform_eff.html +++ b/doc/compute_temp_deform_eff.html @@ -63,7 +63,7 @@ vector values will be in energy units.

    Restrictions:

    -

    This compute is part of the "user-eff" package. It is only enabled if +

    This compute is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/compute_temp_deform_eff.txt b/doc/compute_temp_deform_eff.txt index 3a0497e5bf..199fa5fdc4 100644 --- a/doc/compute_temp_deform_eff.txt +++ b/doc/compute_temp_deform_eff.txt @@ -60,7 +60,7 @@ vector values will be in energy "units"_units.html. [Restrictions:] -This compute is part of the "user-eff" package. It is only enabled if +This compute is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/compute_temp_eff.html b/doc/compute_temp_eff.html index bdb8a4ee77..3cc20e9db7 100644 --- a/doc/compute_temp_eff.html +++ b/doc/compute_temp_eff.html @@ -85,7 +85,7 @@ the simulation.

    Restrictions:

    -

    This compute is part of the "user-eff" package. It is only enabled if +

    This compute is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/compute_temp_eff.txt b/doc/compute_temp_eff.txt index a83ee8b61c..194aaa3c7b 100644 --- a/doc/compute_temp_eff.txt +++ b/doc/compute_temp_eff.txt @@ -82,7 +82,7 @@ the simulation. [Restrictions:] -This compute is part of the "user-eff" package. It is only enabled if +This compute is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/compute_temp_partial.html b/doc/compute_temp_partial.html index 62529fcfb1..c076a2be52 100644 --- a/doc/compute_temp_partial.html +++ b/doc/compute_temp_partial.html @@ -83,9 +83,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/compute_temp_partial.txt b/doc/compute_temp_partial.txt index 1d81bd29c4..ab5d42f9d0 100644 --- a/doc/compute_temp_partial.txt +++ b/doc/compute_temp_partial.txt @@ -79,9 +79,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/compute_temp_region_eff.html b/doc/compute_temp_region_eff.html index 6bb12a428b..e4e84b9e8c 100644 --- a/doc/compute_temp_region_eff.html +++ b/doc/compute_temp_region_eff.html @@ -54,7 +54,7 @@ vector values will be in energy units.

    Restrictions:

    -

    This compute is part of the "user-eff" package. It is only enabled if +

    This compute is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/compute_temp_region_eff.txt b/doc/compute_temp_region_eff.txt index 7231f98622..8baf2dd46c 100644 --- a/doc/compute_temp_region_eff.txt +++ b/doc/compute_temp_region_eff.txt @@ -51,7 +51,7 @@ vector values will be in energy "units"_units.html. [Restrictions:] -This compute is part of the "user-eff" package. It is only enabled if +This compute is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/compute_temp_rotate.html b/doc/compute_temp_rotate.html index 389fa20ce2..cbd3a31042 100644 --- a/doc/compute_temp_rotate.html +++ b/doc/compute_temp_rotate.html @@ -88,8 +88,8 @@ vector values will be in energy units.

    Restrictions:

    -

    This compute is part of the "user-misc" package. It is only enabled -if LAMMPS was built with that package. See the Making +

    This compute is part of the USER-MISC package. It is only enabled if +LAMMPS was built with that package. See the Making LAMMPS section for more info.

    Related commands: diff --git a/doc/compute_temp_rotate.txt b/doc/compute_temp_rotate.txt index 13acc2a976..34feca7b6f 100644 --- a/doc/compute_temp_rotate.txt +++ b/doc/compute_temp_rotate.txt @@ -85,8 +85,8 @@ vector values will be in energy "units"_units.html. [Restrictions:] -This compute is part of the "user-misc" package. It is only enabled -if LAMMPS was built with that package. See the "Making +This compute is part of the USER-MISC package. It is only enabled if +LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. [Related commands:] diff --git a/doc/dihedral_charmm.html b/doc/dihedral_charmm.html index e8b8ca58ab..5a30dd7a46 100644 --- a/doc/dihedral_charmm.html +++ b/doc/dihedral_charmm.html @@ -70,7 +70,7 @@ need any 1-4 information.

    Restrictions:

    This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/dihedral_charmm.txt b/doc/dihedral_charmm.txt index e28adab342..4105573458 100644 --- a/doc/dihedral_charmm.txt +++ b/doc/dihedral_charmm.txt @@ -67,7 +67,7 @@ need any 1-4 information. [Restrictions:] This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/dihedral_class2.html b/doc/dihedral_class2.html index 5b55f4e39f..471ccdd17d 100644 --- a/doc/dihedral_class2.html +++ b/doc/dihedral_class2.html @@ -140,7 +140,7 @@ listed under a "BondBond13 Coeffs" heading and you must leave out the

    Restrictions:

    This dihedral style can only be used if LAMMPS was built with the -"class2" package. See the Making LAMMPS +CLASS2 package. See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/dihedral_class2.txt b/doc/dihedral_class2.txt index ea9fa52cf1..21e37cb12b 100644 --- a/doc/dihedral_class2.txt +++ b/doc/dihedral_class2.txt @@ -137,7 +137,7 @@ r3 (distance) :ul [Restrictions:] This dihedral style can only be used if LAMMPS was built with the -"class2" package. See the "Making LAMMPS"_Section_start.html#start_3 +CLASS2 package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/dihedral_cosine_shift_exp.html b/doc/dihedral_cosine_shift_exp.html index 5062bb6f22..a4927685d0 100644 --- a/doc/dihedral_cosine_shift_exp.html +++ b/doc/dihedral_cosine_shift_exp.html @@ -52,8 +52,8 @@ commands:

    Restrictions:

    This dihedral style can only be used if LAMMPS was built with the -"user-misc" package. See the Making -LAMMPS section for more info on packages. +USER-MISC package. See the Making LAMMPS +section for more info on packages.

    Related commands:

    diff --git a/doc/dihedral_cosine_shift_exp.txt b/doc/dihedral_cosine_shift_exp.txt index f4e94263f8..dd49b2759b 100644 --- a/doc/dihedral_cosine_shift_exp.txt +++ b/doc/dihedral_cosine_shift_exp.txt @@ -49,8 +49,8 @@ A (real number) :ul [Restrictions:] This dihedral style can only be used if LAMMPS was built with the -"user-misc" package. See the "Making -LAMMPS"_Section_start.html#start_3 section for more info on packages. +USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3 +section for more info on packages. [Related commands:] diff --git a/doc/dihedral_harmonic.html b/doc/dihedral_harmonic.html index eb1b760ee7..68a8a6bbca 100644 --- a/doc/dihedral_harmonic.html +++ b/doc/dihedral_harmonic.html @@ -38,7 +38,7 @@ or read_restart commands:

    Restrictions:

    This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/dihedral_harmonic.txt b/doc/dihedral_harmonic.txt index 99452498ab..bb4192f816 100644 --- a/doc/dihedral_harmonic.txt +++ b/doc/dihedral_harmonic.txt @@ -35,7 +35,7 @@ n (integer >= 0) :ul [Restrictions:] This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/dihedral_helix.html b/doc/dihedral_helix.html index 403625c6ce..93dd552164 100644 --- a/doc/dihedral_helix.html +++ b/doc/dihedral_helix.html @@ -46,7 +46,7 @@ or read_restart commands:

    Restrictions:

    This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/dihedral_helix.txt b/doc/dihedral_helix.txt index 1220924989..3ff9b53898 100644 --- a/doc/dihedral_helix.txt +++ b/doc/dihedral_helix.txt @@ -43,7 +43,7 @@ C (energy) :ul [Restrictions:] This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/dihedral_hybrid.html b/doc/dihedral_hybrid.html index 673240052f..07e9f6ee41 100644 --- a/doc/dihedral_hybrid.html +++ b/doc/dihedral_hybrid.html @@ -78,7 +78,7 @@ for specific dihedral types.

    Restrictions:

    This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Unlike other dihedral styles, the hybrid dihedral style does not store diff --git a/doc/dihedral_hybrid.txt b/doc/dihedral_hybrid.txt index 74a2ef1b92..4ccf8ef057 100644 --- a/doc/dihedral_hybrid.txt +++ b/doc/dihedral_hybrid.txt @@ -75,7 +75,7 @@ for specific dihedral types. [Restrictions:] This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. Unlike other dihedral styles, the hybrid dihedral style does not store diff --git a/doc/dihedral_multi_harmonic.html b/doc/dihedral_multi_harmonic.html index 0cff3cab22..f63c22fc24 100644 --- a/doc/dihedral_multi_harmonic.html +++ b/doc/dihedral_multi_harmonic.html @@ -40,7 +40,7 @@ or read_restart commands:

    Restrictions:

    This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/dihedral_multi_harmonic.txt b/doc/dihedral_multi_harmonic.txt index e5c9c2939c..d0196279bf 100644 --- a/doc/dihedral_multi_harmonic.txt +++ b/doc/dihedral_multi_harmonic.txt @@ -37,7 +37,7 @@ A5 (energy) :ul [Restrictions:] This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/dihedral_opls.html b/doc/dihedral_opls.html index 098a8fed84..39cd3f6b92 100644 --- a/doc/dihedral_opls.html +++ b/doc/dihedral_opls.html @@ -44,7 +44,7 @@ or read_restart commands:

    Restrictions:

    This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/dihedral_opls.txt b/doc/dihedral_opls.txt index 048e1f363b..530201899a 100644 --- a/doc/dihedral_opls.txt +++ b/doc/dihedral_opls.txt @@ -41,7 +41,7 @@ K4 (energy) :ul [Restrictions:] This dihedral style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/dihedral_style.html b/doc/dihedral_style.html index 654f0f81e4..e2f6ea5322 100644 --- a/doc/dihedral_style.html +++ b/doc/dihedral_style.html @@ -98,8 +98,8 @@ page.

    Dihedral styles can only be set for atom styles that allow dihedrals to be defined.

    -

    Most dihedral styles are part of the "molecular" package. They are -only enabled if LAMMPS was built with that package. See the Making +

    Most dihedral styles are part of the MOLECULAR package. They are only +enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info on packages. The doc pages for individual dihedral potentials tell if it is part of a package. diff --git a/doc/dihedral_style.txt b/doc/dihedral_style.txt index 82c2123de7..788215a6ed 100644 --- a/doc/dihedral_style.txt +++ b/doc/dihedral_style.txt @@ -96,8 +96,8 @@ page"_Section_commands.html#cmd_5. Dihedral styles can only be set for atom styles that allow dihedrals to be defined. -Most dihedral styles are part of the "molecular" package. They are -only enabled if LAMMPS was built with that package. See the "Making +Most dihedral styles are part of the MOLECULAR package. They are only +enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. The doc pages for individual dihedral potentials tell if it is part of a package. diff --git a/doc/dump.html b/doc/dump.html index 7e599ea3cb..23bd26c179 100644 --- a/doc/dump.html +++ b/doc/dump.html @@ -510,7 +510,7 @@ per-atom quantities which could then be output into dump files. -DLAMMPS_GZIP option - see the Making LAMMPS section of the documentation.

    -

    The xtc style is part of the "xtc" package. It is only enabled if +

    The xtc style is part of the XTC package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info. This is because some machines may not support the low-level XDR data format diff --git a/doc/dump.txt b/doc/dump.txt index 96b3126b4a..56df5f44a1 100644 --- a/doc/dump.txt +++ b/doc/dump.txt @@ -499,7 +499,7 @@ To write gzipped dump files, you must compile LAMMPS with the -DLAMMPS_GZIP option - see the "Making LAMMPS"_Section_start.html#start_2 section of the documentation. -The {xtc} style is part of the "xtc" package. It is only enabled if +The {xtc} style is part of the XTC package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. This is because some machines may not support the low-level XDR data format diff --git a/doc/fix_addforce.html b/doc/fix_addforce.html index 2e54554184..4fe72468f1 100644 --- a/doc/fix_addforce.html +++ b/doc/fix_addforce.html @@ -116,9 +116,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/fix_addforce.txt b/doc/fix_addforce.txt index 3dc0b740bb..e2c6e2e1fc 100644 --- a/doc/fix_addforce.txt +++ b/doc/fix_addforce.txt @@ -105,9 +105,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/fix_addtorque.html b/doc/fix_addtorque.html index 5db501ff5f..a9a521e3b7 100644 --- a/doc/fix_addtorque.html +++ b/doc/fix_addtorque.html @@ -89,7 +89,7 @@ the iteration count during the minimization.

    Restrictions:

    -

    This fix is part of the "user-misc" package. It is only enabled if +

    This fix is part of the USER-MISC package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_addtorque.txt b/doc/fix_addtorque.txt index 9e8b82f732..3cda16af67 100644 --- a/doc/fix_addtorque.txt +++ b/doc/fix_addtorque.txt @@ -82,7 +82,7 @@ the iteration count during the minimization. [Restrictions:] -This fix is part of the "user-misc" package. It is only enabled if +This fix is part of the USER-MISC package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_atc.html b/doc/fix_atc.html index 7e37dd1988..18063dd103 100644 --- a/doc/fix_atc.html +++ b/doc/fix_atc.html @@ -151,7 +151,7 @@ minimization.

    Restrictions:

    -

    This fix is part of the "user-atc" package. It is only enabled if +

    This fix is part of the USER-ATC package. It is only enabled if LAMMPS was built with that package, which also requires the ATC library be built and linked with LAMMPS. See the Making LAMMPS section for more info. diff --git a/doc/fix_atc.txt b/doc/fix_atc.txt index d7ad329dde..551265b9e0 100644 --- a/doc/fix_atc.txt +++ b/doc/fix_atc.txt @@ -144,7 +144,7 @@ minimization"_minimize.html. [Restrictions:] -This fix is part of the "user-atc" package. It is only enabled if +This fix is part of the USER-ATC package. It is only enabled if LAMMPS was built with that package, which also requires the ATC library be built and linked with LAMMPS. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_aveforce.html b/doc/fix_aveforce.html index 27a17ec497..d2f9355090 100644 --- a/doc/fix_aveforce.html +++ b/doc/fix_aveforce.html @@ -82,9 +82,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/fix_aveforce.txt b/doc/fix_aveforce.txt index af83f52127..b8db603c51 100644 --- a/doc/fix_aveforce.txt +++ b/doc/fix_aveforce.txt @@ -71,9 +71,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/fix_bond_break.html b/doc/fix_bond_break.html index 497df4775b..55e786263b 100644 --- a/doc/fix_bond_break.html +++ b/doc/fix_bond_break.html @@ -128,8 +128,8 @@ minimization.

    Restrictions:

    -

    This fix is part of the "mc" package. It is only enabled if LAMMPS -was built with that package. See the Making +

    This fix is part of the MC package. It is only enabled if LAMMPS was +built with that package. See the Making LAMMPS section for more info.

    Currently, there are 2 restrictions for using this fix. We may relax diff --git a/doc/fix_bond_break.txt b/doc/fix_bond_break.txt index 97cb2fa592..d6ee6bec0e 100755 --- a/doc/fix_bond_break.txt +++ b/doc/fix_bond_break.txt @@ -117,8 +117,8 @@ minimization"_minimize.html. [Restrictions:] -This fix is part of the "mc" package. It is only enabled if LAMMPS -was built with that package. See the "Making +This fix is part of the MC package. It is only enabled if LAMMPS was +built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. Currently, there are 2 restrictions for using this fix. We may relax diff --git a/doc/fix_bond_create.html b/doc/fix_bond_create.html index 80090cbeeb..a521d01914 100644 --- a/doc/fix_bond_create.html +++ b/doc/fix_bond_create.html @@ -185,8 +185,8 @@ minimization.

    Restrictions:

    -

    This fix is part of the "mc" package. It is only enabled if LAMMPS -was built with that package. See the Making +

    This fix is part of the MC package. It is only enabled if LAMMPS was +built with that package. See the Making LAMMPS section for more info.

    Currently, there are 2 restrictions for using this fix. We may relax diff --git a/doc/fix_bond_create.txt b/doc/fix_bond_create.txt index d373e60661..17fbb77ede 100755 --- a/doc/fix_bond_create.txt +++ b/doc/fix_bond_create.txt @@ -173,8 +173,8 @@ minimization"_minimize.html. [Restrictions:] -This fix is part of the "mc" package. It is only enabled if LAMMPS -was built with that package. See the "Making +This fix is part of the MC package. It is only enabled if LAMMPS was +built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. Currently, there are 2 restrictions for using this fix. We may relax diff --git a/doc/fix_bond_swap.html b/doc/fix_bond_swap.html index 4933394099..4a6e5b7366 100644 --- a/doc/fix_bond_swap.html +++ b/doc/fix_bond_swap.html @@ -160,8 +160,8 @@ minimization.

    Restrictions:

    -

    This fix is part of the "mc" package. It is only enabled if LAMMPS -was built with that package. See the Making +

    This fix is part of the MC package. It is only enabled if LAMMPS was +built with that package. See the Making LAMMPS section for more info.

    The setings of the "special_bond" command must be 0,1,1 in order to diff --git a/doc/fix_bond_swap.txt b/doc/fix_bond_swap.txt index f5cb81f8fc..e1e1aeba5a 100755 --- a/doc/fix_bond_swap.txt +++ b/doc/fix_bond_swap.txt @@ -157,8 +157,8 @@ minimization"_minimize.html. [Restrictions:] -This fix is part of the "mc" package. It is only enabled if LAMMPS -was built with that package. See the "Making +This fix is part of the MC package. It is only enabled if LAMMPS was +built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. The setings of the "special_bond" command must be 0,1,1 in order to diff --git a/doc/fix_enforce2d.html b/doc/fix_enforce2d.html index 67cfe4da14..cad153683e 100644 --- a/doc/fix_enforce2d.html +++ b/doc/fix_enforce2d.html @@ -39,9 +39,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/fix_enforce2d.txt b/doc/fix_enforce2d.txt index 578b311799..20bcf8f3c7 100644 --- a/doc/fix_enforce2d.txt +++ b/doc/fix_enforce2d.txt @@ -35,9 +35,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/fix_freeze.html b/doc/fix_freeze.html index 8cf86af535..762460f39d 100644 --- a/doc/fix_freeze.html +++ b/doc/fix_freeze.html @@ -41,9 +41,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line @@ -73,7 +73,7 @@ minimization.

    Restrictions:

    -

    This fix is part of the "granular" package. It is only enabled if +

    This fix is part of the GRANULAR package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_freeze.txt b/doc/fix_freeze.txt index 52c0698776..ac89b18190 100644 --- a/doc/fix_freeze.txt +++ b/doc/fix_freeze.txt @@ -37,9 +37,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line @@ -69,7 +69,7 @@ minimization"_minimize.html. [Restrictions:] -This fix is part of the "granular" package. It is only enabled if +This fix is part of the GRANULAR package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_gcmc.html b/doc/fix_gcmc.html index c2a5db81a9..2832f4f127 100644 --- a/doc/fix_gcmc.html +++ b/doc/fix_gcmc.html @@ -148,8 +148,8 @@ minimization.

    Restrictions:

    -

    This fix is part of the "mc" package. It is only enabled if LAMMPS -was built with that package. See the Making +

    This fix is part of the MC package. It is only enabled if LAMMPS was +built with that package. See the Making LAMMPS section for more info.

    Do not set "neigh_modify once yes" or else this fix will never be diff --git a/doc/fix_gcmc.txt b/doc/fix_gcmc.txt index ecf56d1de1..e428e5c6aa 100644 --- a/doc/fix_gcmc.txt +++ b/doc/fix_gcmc.txt @@ -133,8 +133,8 @@ minimization"_minimize.html. [Restrictions:] -This fix is part of the "mc" package. It is only enabled if LAMMPS -was built with that package. See the "Making +This fix is part of the MC package. It is only enabled if LAMMPS was +built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. Do not set "neigh_modify once yes" or else this fix will never be diff --git a/doc/fix_gravity.html b/doc/fix_gravity.html index 3446d9b08a..6f892414ba 100644 --- a/doc/fix_gravity.html +++ b/doc/fix_gravity.html @@ -96,9 +96,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/fix_gravity.txt b/doc/fix_gravity.txt index 1ee4b5ce3b..7fb55039d6 100644 --- a/doc/fix_gravity.txt +++ b/doc/fix_gravity.txt @@ -87,9 +87,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/fix_imd.html b/doc/fix_imd.html index d800f16b14..529fa96864 100644 --- a/doc/fix_imd.html +++ b/doc/fix_imd.html @@ -151,7 +151,7 @@ This fix is not invoked during energy minimization

    Restrictions:

    -

    This fix is part of the "user-misc" package. It is only enabled if +

    This fix is part of the USER-MISC package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_imd.txt b/doc/fix_imd.txt index 66ea5676d0..246cb36e0c 100644 --- a/doc/fix_imd.txt +++ b/doc/fix_imd.txt @@ -141,7 +141,7 @@ This fix is not invoked during "energy minimization"_minimize.html. [Restrictions:] -This fix is part of the "user-misc" package. It is only enabled if +This fix is part of the USER-MISC package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_langevin_eff.html b/doc/fix_langevin_eff.html index 60ad5d1e78..db86010923 100644 --- a/doc/fix_langevin_eff.html +++ b/doc/fix_langevin_eff.html @@ -99,7 +99,7 @@ quantity requires setting the tally keyword to yes.

    Restrictions: none

    -

    This fix is part of the "user-eff" package. It is only enabled if +

    This fix is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_langevin_eff.txt b/doc/fix_langevin_eff.txt index 1ee877bd6c..a6806a39cd 100644 --- a/doc/fix_langevin_eff.txt +++ b/doc/fix_langevin_eff.txt @@ -89,7 +89,7 @@ This fix is not invoked during "energy minimization"_minimize.html. [Restrictions:] none -This fix is part of the "user-eff" package. It is only enabled if +This fix is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_msst.html b/doc/fix_msst.html index 3368fea2b0..8be90641a8 100644 --- a/doc/fix_msst.html +++ b/doc/fix_msst.html @@ -145,7 +145,7 @@ by this fix are "extensive"; the vector values are "intensive".

    Restrictions:

    -

    This fix style is part of the "shock" package. It is only enabled if +

    This fix style is part of the SHOCK package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_msst.txt b/doc/fix_msst.txt index 1e77077965..0a606bf814 100644 --- a/doc/fix_msst.txt +++ b/doc/fix_msst.txt @@ -135,7 +135,7 @@ by this fix are "extensive"; the vector values are "intensive". [Restrictions:] -This fix style is part of the "shock" package. It is only enabled if +This fix style is part of the SHOCK package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_neb.html b/doc/fix_neb.html index 0b41163b24..79390f9b38 100644 --- a/doc/fix_neb.html +++ b/doc/fix_neb.html @@ -91,7 +91,7 @@ as invoked by the minimize command via the

    Restrictions:

    -

    This command can only be used if LAMMPS was built with the "replica" +

    This command can only be used if LAMMPS was built with the REPLICA package. See the Making LAMMPS section for more info on packages.

    diff --git a/doc/fix_neb.txt b/doc/fix_neb.txt index fa8cb1b719..397a259c4f 100644 --- a/doc/fix_neb.txt +++ b/doc/fix_neb.txt @@ -88,7 +88,7 @@ as invoked by the "minimize"_minimize.html command via the [Restrictions:] -This command can only be used if LAMMPS was built with the "replica" +This command can only be used if LAMMPS was built with the REPLICA package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. diff --git a/doc/fix_nh.html b/doc/fix_nh.html index 526c9075ff..49165c16ce 100644 --- a/doc/fix_nh.html +++ b/doc/fix_nh.html @@ -380,9 +380,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/fix_nh.txt b/doc/fix_nh.txt index 6c6ca6072a..4b4ea236e5 100644 --- a/doc/fix_nh.txt +++ b/doc/fix_nh.txt @@ -370,9 +370,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/fix_nh_eff.html b/doc/fix_nh_eff.html index 2b798928de..7d159b4bd6 100644 --- a/doc/fix_nh_eff.html +++ b/doc/fix_nh_eff.html @@ -110,7 +110,7 @@ for details.

    Restrictions:

    -

    This fix is part of the "user-eff" package. It is only enabled if +

    This fix is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_nh_eff.txt b/doc/fix_nh_eff.txt index 9c7a9db43d..84ef87d6f7 100644 --- a/doc/fix_nh_eff.txt +++ b/doc/fix_nh_eff.txt @@ -102,7 +102,7 @@ for details. [Restrictions:] -This fix is part of the "user-eff" package. It is only enabled if +This fix is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_nph_asphere.html b/doc/fix_nph_asphere.html index 060e17ec94..43e2383abc 100644 --- a/doc/fix_nph_asphere.html +++ b/doc/fix_nph_asphere.html @@ -111,8 +111,8 @@ quantities as does the fix nph command.

    Restrictions:

    -

    This fix is part of the "asphere" package. It is only enabled if -LAMMPS was built with that package. See the Making +

    This fix is part of the ASPHERE package. It is only enabled if LAMMPS +was built with that package. See the Making LAMMPS section for more info.

    This fix requires that atoms store torque and angular momementum and a diff --git a/doc/fix_nph_asphere.txt b/doc/fix_nph_asphere.txt index 99954fc687..857ff9fd8a 100755 --- a/doc/fix_nph_asphere.txt +++ b/doc/fix_nph_asphere.txt @@ -108,8 +108,8 @@ This fix is not invoked during "energy minimization"_minimize.html. [Restrictions:] -This fix is part of the "asphere" package. It is only enabled if -LAMMPS was built with that package. See the "Making +This fix is part of the ASPHERE package. It is only enabled if LAMMPS +was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. This fix requires that atoms store torque and angular momementum and a diff --git a/doc/fix_npt_asphere.html b/doc/fix_npt_asphere.html index dcfc1ae0c1..7eb9df9abc 100644 --- a/doc/fix_npt_asphere.html +++ b/doc/fix_npt_asphere.html @@ -136,8 +136,8 @@ this.

    Restrictions:

    -

    This fix is part of the "asphere" package. It is only enabled if -LAMMPS was built with that package. See the Making +

    This fix is part of the ASPHERE package. It is only enabled if LAMMPS +was built with that package. See the Making LAMMPS section for more info.

    This fix requires that atoms store torque and angular momementum and a diff --git a/doc/fix_npt_asphere.txt b/doc/fix_npt_asphere.txt index a3b61b5396..e11ef0eb7d 100755 --- a/doc/fix_npt_asphere.txt +++ b/doc/fix_npt_asphere.txt @@ -133,8 +133,8 @@ This fix is not invoked during "energy minimization"_minimize.html. [Restrictions:] -This fix is part of the "asphere" package. It is only enabled if -LAMMPS was built with that package. See the "Making +This fix is part of the ASPHERE package. It is only enabled if LAMMPS +was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. This fix requires that atoms store torque and angular momementum and a diff --git a/doc/fix_nve.html b/doc/fix_nve.html index 14f94a659b..e08b86dcde 100644 --- a/doc/fix_nve.html +++ b/doc/fix_nve.html @@ -40,9 +40,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/fix_nve.txt b/doc/fix_nve.txt index b6aa2fc0d6..fbc23c25e4 100644 --- a/doc/fix_nve.txt +++ b/doc/fix_nve.txt @@ -36,9 +36,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/fix_nve_asphere.html b/doc/fix_nve_asphere.html index 03bafd8769..8b5ea4a3f5 100644 --- a/doc/fix_nve_asphere.html +++ b/doc/fix_nve_asphere.html @@ -44,8 +44,8 @@ This fix is not invoked during energy minimization

    Restrictions:

    -

    This fix is part of the "asphere" package. It is only enabled if -LAMMPS was built with that package. See the Making +

    This fix is part of the ASPHERE package. It is only enabled if LAMMPS +was built with that package. See the Making LAMMPS section for more info.

    This fix requires that atoms store torque and angular momementum and a diff --git a/doc/fix_nve_asphere.txt b/doc/fix_nve_asphere.txt index 29902973f5..d7b70f41ec 100755 --- a/doc/fix_nve_asphere.txt +++ b/doc/fix_nve_asphere.txt @@ -41,8 +41,8 @@ This fix is not invoked during "energy minimization"_minimize.html. [Restrictions:] -This fix is part of the "asphere" package. It is only enabled if -LAMMPS was built with that package. See the "Making +This fix is part of the ASPHERE package. It is only enabled if LAMMPS +was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. This fix requires that atoms store torque and angular momementum and a diff --git a/doc/fix_nve_eff.html b/doc/fix_nve_eff.html index dcc0534500..80b1509242 100644 --- a/doc/fix_nve_eff.html +++ b/doc/fix_nve_eff.html @@ -45,7 +45,7 @@ This fix is not invoked during energy minimization

    Restrictions:

    -

    This fix is part of the "user-eff" package. It is only enabled if +

    This fix is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_nve_eff.txt b/doc/fix_nve_eff.txt index f500bc1987..156f184dac 100644 --- a/doc/fix_nve_eff.txt +++ b/doc/fix_nve_eff.txt @@ -42,7 +42,7 @@ This fix is not invoked during "energy minimization"_minimize.html. [Restrictions:] -This fix is part of the "user-eff" package. It is only enabled if +This fix is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_nvt_asphere.html b/doc/fix_nvt_asphere.html index dd3a8e7e7f..903d3bccb7 100644 --- a/doc/fix_nvt_asphere.html +++ b/doc/fix_nvt_asphere.html @@ -112,8 +112,8 @@ quantities as does the fix nvt command.

    Restrictions:

    -

    This fix is part of the "asphere" package. It is only enabled if -LAMMPS was built with that package. See the Making +

    This fix is part of the ASPHERE package. It is only enabled if LAMMPS +was built with that package. See the Making LAMMPS section for more info.

    This fix requires that atoms store torque and angular momementum and a diff --git a/doc/fix_nvt_asphere.txt b/doc/fix_nvt_asphere.txt index 1b910fd382..8af5be1288 100755 --- a/doc/fix_nvt_asphere.txt +++ b/doc/fix_nvt_asphere.txt @@ -109,8 +109,8 @@ This fix is not invoked during "energy minimization"_minimize.html. [Restrictions:] -This fix is part of the "asphere" package. It is only enabled if -LAMMPS was built with that package. See the "Making +This fix is part of the ASPHERE package. It is only enabled if LAMMPS +was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. This fix requires that atoms store torque and angular momementum and a diff --git a/doc/fix_nvt_sllod_eff.html b/doc/fix_nvt_sllod_eff.html index 947c190516..072b124356 100644 --- a/doc/fix_nvt_sllod_eff.html +++ b/doc/fix_nvt_sllod_eff.html @@ -71,7 +71,7 @@ quantities as does the fix nvt/eff command.

    Restrictions:

    -

    This fix is part of the "user-eff" package. It is only enabled if +

    This fix is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_nvt_sllod_eff.txt b/doc/fix_nvt_sllod_eff.txt index 23ed2ba738..c2d397097c 100644 --- a/doc/fix_nvt_sllod_eff.txt +++ b/doc/fix_nvt_sllod_eff.txt @@ -68,7 +68,7 @@ This fix is not invoked during "energy minimization"_minimize.html. [Restrictions:] -This fix is part of the "user-eff" package. It is only enabled if +This fix is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_poems.html b/doc/fix_poems.html index 3a6e47ff07..0bc381f4e6 100644 --- a/doc/fix_poems.html +++ b/doc/fix_poems.html @@ -122,7 +122,7 @@ This fix is not invoked during energy minimization

    Restrictions:

    -

    This fix is part of the "poems" package. It is only enabled if LAMMPS +

    This fix is part of the POEMS package. It is only enabled if LAMMPS was built with that package, which also requires the POEMS library be built and linked with LAMMPS. See the Making LAMMPS section for more info. diff --git a/doc/fix_poems.txt b/doc/fix_poems.txt index 244b5ff0fc..d90d832cb8 100644 --- a/doc/fix_poems.txt +++ b/doc/fix_poems.txt @@ -115,7 +115,7 @@ This fix is not invoked during "energy minimization"_minimize.html. [Restrictions:] -This fix is part of the "poems" package. It is only enabled if LAMMPS +This fix is part of the POEMS package. It is only enabled if LAMMPS was built with that package, which also requires the POEMS library be built and linked with LAMMPS. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_pour.html b/doc/fix_pour.html index 9e85bba921..8ef12fa784 100644 --- a/doc/fix_pour.html +++ b/doc/fix_pour.html @@ -127,7 +127,7 @@ minimization.

    Restrictions:

    -

    This fix is part of the "granular" package. It is only enabled if +

    This fix is part of the GRANULAR package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_pour.txt b/doc/fix_pour.txt index 56d4e6f737..e1521809cf 100644 --- a/doc/fix_pour.txt +++ b/doc/fix_pour.txt @@ -116,7 +116,7 @@ minimization"_minimize.html. [Restrictions:] -This fix is part of the "granular" package. It is only enabled if +This fix is part of the GRANULAR package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_qeq_reax.html b/doc/fix_qeq_reax.html index 65ed93d0dc..ef970af524 100644 --- a/doc/fix_qeq_reax.html +++ b/doc/fix_qeq_reax.html @@ -73,7 +73,7 @@ be used with the start/stop keywords of the run

    Restrictions:

    -

    This fix is part of the "user-reaxc" package. It is only enabled if +

    This fix is part of the USER-REAXC package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_qeq_reax.txt b/doc/fix_qeq_reax.txt index 8daf358fa8..f57f2f2549 100644 --- a/doc/fix_qeq_reax.txt +++ b/doc/fix_qeq_reax.txt @@ -70,7 +70,7 @@ This fix is invoked during "energy minimization"_minimize.html. [Restrictions:] -This fix is part of the "user-reaxc" package. It is only enabled if +This fix is part of the USER-REAXC package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_reax_bonds.html b/doc/fix_reax_bonds.html index 0eb4c2691d..09f23c1f19 100644 --- a/doc/fix_reax_bonds.html +++ b/doc/fix_reax_bonds.html @@ -48,8 +48,8 @@ This fix is not invoked during energy minimization

    Restrictions:

    This fix requires that the pair_style reax be -invoked. This fix is part of the "reax" package. It is only enabled -if LAMMPS was built with that package, which also requires the REAX +invoked. This fix is part of the REAX package. It is only enabled if +LAMMPS was built with that package, which also requires the REAX library be built and linked with LAMMPS. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_reax_bonds.txt b/doc/fix_reax_bonds.txt index 1a42f8aa78..5ebb2a5265 100644 --- a/doc/fix_reax_bonds.txt +++ b/doc/fix_reax_bonds.txt @@ -45,8 +45,8 @@ This fix is not invoked during "energy minimization"_minimize.html. [Restrictions:] This fix requires that the "pair_style reax"_pair_reax.html be -invoked. This fix is part of the "reax" package. It is only enabled -if LAMMPS was built with that package, which also requires the REAX +invoked. This fix is part of the REAX package. It is only enabled if +LAMMPS was built with that package, which also requires the REAX library be built and linked with LAMMPS. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_setforce.html b/doc/fix_setforce.html index e2194f2a4f..6e713254d4 100644 --- a/doc/fix_setforce.html +++ b/doc/fix_setforce.html @@ -83,9 +83,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/fix_setforce.txt b/doc/fix_setforce.txt index ee6f78341d..90404f0324 100644 --- a/doc/fix_setforce.txt +++ b/doc/fix_setforce.txt @@ -72,9 +72,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/fix_shake.html b/doc/fix_shake.html index 80ec33ddf4..a5aad277aa 100644 --- a/doc/fix_shake.html +++ b/doc/fix_shake.html @@ -97,9 +97,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/fix_shake.txt b/doc/fix_shake.txt index 320a02a153..dee3239bd8 100644 --- a/doc/fix_shake.txt +++ b/doc/fix_shake.txt @@ -85,9 +85,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/fix_smd.html b/doc/fix_smd.html index cf56e43fec..ececffdc41 100644 --- a/doc/fix_smd.html +++ b/doc/fix_smd.html @@ -132,7 +132,7 @@ minimization.

    Restrictions:

    -

    This fix is part of the "user-misc" package. It is only enabled if +

    This fix is part of the USER-MISC package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_smd.txt b/doc/fix_smd.txt index f4ff6bd807..d58a24eb13 100644 --- a/doc/fix_smd.txt +++ b/doc/fix_smd.txt @@ -123,7 +123,7 @@ minimization"_minimize.html. [Restrictions:] -This fix is part of the "user-misc" package. It is only enabled if +This fix is part of the USER-MISC package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_srd.html b/doc/fix_srd.html index a563e65615..df029d06fd 100644 --- a/doc/fix_srd.html +++ b/doc/fix_srd.html @@ -346,7 +346,7 @@ minimization.

    Restrictions:

    -

    This command can only be used if LAMMPS was built with the "srd" +

    This command can only be used if LAMMPS was built with the SRD package. See the Making LAMMPS section for more info on packages.

    diff --git a/doc/fix_srd.txt b/doc/fix_srd.txt index 12cd5332d8..a45c21392e 100644 --- a/doc/fix_srd.txt +++ b/doc/fix_srd.txt @@ -340,7 +340,7 @@ minimization"_minimize.html. [Restrictions:] -This command can only be used if LAMMPS was built with the "srd" +This command can only be used if LAMMPS was built with the SRD package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. diff --git a/doc/fix_temp_berendsen.html b/doc/fix_temp_berendsen.html index 70a8f7023d..0762f66eea 100644 --- a/doc/fix_temp_berendsen.html +++ b/doc/fix_temp_berendsen.html @@ -104,9 +104,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/fix_temp_berendsen.txt b/doc/fix_temp_berendsen.txt index 5bcb03481a..8dd9620418 100644 --- a/doc/fix_temp_berendsen.txt +++ b/doc/fix_temp_berendsen.txt @@ -100,9 +100,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/fix_temp_rescale.html b/doc/fix_temp_rescale.html index 5f1787131f..81273ed4e3 100644 --- a/doc/fix_temp_rescale.html +++ b/doc/fix_temp_rescale.html @@ -113,9 +113,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/fix_temp_rescale.txt b/doc/fix_temp_rescale.txt index 1db777f148..5fbe99e5b3 100644 --- a/doc/fix_temp_rescale.txt +++ b/doc/fix_temp_rescale.txt @@ -108,9 +108,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/fix_temp_rescale_eff.html b/doc/fix_temp_rescale_eff.html index 24810091e8..038e181938 100644 --- a/doc/fix_temp_rescale_eff.html +++ b/doc/fix_temp_rescale_eff.html @@ -66,7 +66,7 @@ calculated by this fix is "extensive".

    Restrictions:

    -

    This fix is part of the "user-eff" package. It is only enabled if +

    This fix is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_temp_rescale_eff.txt b/doc/fix_temp_rescale_eff.txt index 184ff3a095..f96b40962a 100644 --- a/doc/fix_temp_rescale_eff.txt +++ b/doc/fix_temp_rescale_eff.txt @@ -63,7 +63,7 @@ This fix is not invoked during "energy minimization"_minimize.html. [Restrictions:] -This fix is part of the "user-eff" package. It is only enabled if +This fix is part of the USER-EFF package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/fix_viscous.html b/doc/fix_viscous.html index 112301acfd..fe03b98672 100644 --- a/doc/fix_viscous.html +++ b/doc/fix_viscous.html @@ -91,9 +91,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line diff --git a/doc/fix_viscous.txt b/doc/fix_viscous.txt index 49002a439c..bfd26b726b 100644 --- a/doc/fix_viscous.txt +++ b/doc/fix_viscous.txt @@ -82,9 +82,9 @@ run faster, depending on your available hardware, as discussed in styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda" package. They -are only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +These accelerated styles are part of the USER-CUDA package. They are +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the "-suffix command-line diff --git a/doc/fix_wall_gran.html b/doc/fix_wall_gran.html index 5620f7fa07..cc8473392c 100644 --- a/doc/fix_wall_gran.html +++ b/doc/fix_wall_gran.html @@ -161,7 +161,7 @@ minimization.

    Restrictions:

    -

    This fix is part of the "granular" package. It is only enabled if +

    This fix is part of the GRANULAR package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/fix_wall_gran.txt b/doc/fix_wall_gran.txt index f3bf272f03..f758a83647 100644 --- a/doc/fix_wall_gran.txt +++ b/doc/fix_wall_gran.txt @@ -144,7 +144,7 @@ minimization"_minimize.html. [Restrictions:] -This fix is part of the "granular" package. It is only enabled if +This fix is part of the GRANULAR package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/improper_class2.html b/doc/improper_class2.html index 481ab8e3b7..315163711a 100644 --- a/doc/improper_class2.html +++ b/doc/improper_class2.html @@ -86,7 +86,7 @@ radians internally; hence the units of M are in energy/radian^2.

    Restrictions:

    This improper style can only be used if LAMMPS was built with the -"class2" package. See the Making LAMMPS +CLASS2 package. See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/improper_class2.txt b/doc/improper_class2.txt index e44e69a4fd..156d97fa8a 100644 --- a/doc/improper_class2.txt +++ b/doc/improper_class2.txt @@ -83,7 +83,7 @@ radians internally; hence the units of M are in energy/radian^2. [Restrictions:] This improper style can only be used if LAMMPS was built with the -"class2" package. See the "Making LAMMPS"_Section_start.html#start_3 +CLASS2 package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/improper_cvff.html b/doc/improper_cvff.html index b31a51611b..9c8a3e97ad 100644 --- a/doc/improper_cvff.html +++ b/doc/improper_cvff.html @@ -56,7 +56,7 @@ commands:

    Restrictions:

    This improper style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/improper_cvff.txt b/doc/improper_cvff.txt index 83c9f2aab1..79df382989 100644 --- a/doc/improper_cvff.txt +++ b/doc/improper_cvff.txt @@ -53,7 +53,7 @@ n (0,1,2,3,4,6) :ul [Restrictions:] This improper style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/improper_harmonic.html b/doc/improper_harmonic.html index e5747949d1..9ba2e9cce9 100644 --- a/doc/improper_harmonic.html +++ b/doc/improper_harmonic.html @@ -56,7 +56,7 @@ internally; hence the units of K are in energy/radian^2.

    Restrictions:

    This improper style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/improper_harmonic.txt b/doc/improper_harmonic.txt index 91451be7ab..e57ad41308 100644 --- a/doc/improper_harmonic.txt +++ b/doc/improper_harmonic.txt @@ -53,7 +53,7 @@ internally; hence the units of K are in energy/radian^2. [Restrictions:] This improper style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/improper_hybrid.html b/doc/improper_hybrid.html index b67f99d5f0..52b68f4bda 100644 --- a/doc/improper_hybrid.html +++ b/doc/improper_hybrid.html @@ -56,7 +56,7 @@ types.

    Restrictions:

    This improper style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Unlike other improper styles, the hybrid improper style does not store diff --git a/doc/improper_hybrid.txt b/doc/improper_hybrid.txt index 9af233e331..ee9dfc5718 100644 --- a/doc/improper_hybrid.txt +++ b/doc/improper_hybrid.txt @@ -53,7 +53,7 @@ types. [Restrictions:] This improper style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. Unlike other improper styles, the hybrid improper style does not store diff --git a/doc/improper_style.html b/doc/improper_style.html index 3a61ee8caa..db288b7a80 100644 --- a/doc/improper_style.html +++ b/doc/improper_style.html @@ -81,8 +81,8 @@ page.

    Improper styles can only be set for atom_style choices that allow impropers to be defined.

    -

    Most improper styles are part of the "molecular" package. They are -only enabled if LAMMPS was built with that package. See the Making +

    Most improper styles are part of the MOLECULAR package. They are only +enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info on packages. The doc pages for individual improper potentials tell if it is part of a package. diff --git a/doc/improper_style.txt b/doc/improper_style.txt index da255312e4..d636311719 100644 --- a/doc/improper_style.txt +++ b/doc/improper_style.txt @@ -78,8 +78,8 @@ page"_Section_commands.html#cmd_5. Improper styles can only be set for atom_style choices that allow impropers to be defined. -Most improper styles are part of the "molecular" package. They are -only enabled if LAMMPS was built with that package. See the "Making +Most improper styles are part of the MOLECULAR package. They are only +enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. The doc pages for individual improper potentials tell if it is part of a package. diff --git a/doc/improper_umbrella.html b/doc/improper_umbrella.html index 3ccfd10f18..2f10f5da9c 100644 --- a/doc/improper_umbrella.html +++ b/doc/improper_umbrella.html @@ -51,7 +51,7 @@ commands:

    Restrictions:

    This improper style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the Making +MOLECULAR package (which it is by default). See the Making LAMMPS section for more info on packages.

    Related commands: diff --git a/doc/improper_umbrella.txt b/doc/improper_umbrella.txt index 232c46f68f..31a7729a6d 100644 --- a/doc/improper_umbrella.txt +++ b/doc/improper_umbrella.txt @@ -48,7 +48,7 @@ omega0 (degrees) :ul [Restrictions:] This improper style can only be used if LAMMPS was built with the -"molecular" package (which it is by default). See the "Making +MOLECULAR package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. [Related commands:] diff --git a/doc/kspace_style.html b/doc/kspace_style.html index af71e1765d..018a24053a 100644 --- a/doc/kspace_style.html +++ b/doc/kspace_style.html @@ -130,7 +130,7 @@ calculation can be performed concurrently on the GPU while other calculations for non-bonded and bonded force calculation are performed on the CPU.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -145,11 +145,11 @@ or PPPM solver. The only exception is if the slab option is set with kspace_modify, in which case the xy dimensions must be periodic and the z dimension must be non-periodic.

    -

    Kspace styles are part of the "kspace" package. They are only enabled +

    Kspace styles are part of the KSPACE package. They are only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    -

    The ewald/n style is part of the "user-ewaldn" package. It is only +

    The ewald/n style is part of the USER-EWALDN package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/kspace_style.txt b/doc/kspace_style.txt index c5d887ac92..21992d07a3 100644 --- a/doc/kspace_style.txt +++ b/doc/kspace_style.txt @@ -125,7 +125,7 @@ calculation can be performed concurrently on the GPU while other calculations for non-bonded and bonded force calculation are performed on the CPU. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -140,11 +140,11 @@ or PPPM solver. The only exception is if the slab option is set with "kspace_modify"_kspace_modify.html, in which case the xy dimensions must be periodic and the z dimension must be non-periodic. -Kspace styles are part of the "kspace" package. They are only enabled +Kspace styles are part of the KSPACE package. They are only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. -The {ewald/n} style is part of the "user-ewaldn" package. It is only +The {ewald/n} style is part of the USER-EWALDN package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/neb.html b/doc/neb.html index 75f02c4b47..25cc68b644 100644 --- a/doc/neb.html +++ b/doc/neb.html @@ -304,7 +304,7 @@ image.

    Restrictions:

    -

    This command can only be used if LAMMPS was built with the "replica" +

    This command can only be used if LAMMPS was built with the REPLICA package. See the Making LAMMPS section for more info on packages.

    diff --git a/doc/neb.txt b/doc/neb.txt index 993ecd0b0d..1965f23348 100644 --- a/doc/neb.txt +++ b/doc/neb.txt @@ -300,7 +300,7 @@ image. [Restrictions:] -This command can only be used if LAMMPS was built with the "replica" +This command can only be used if LAMMPS was built with the REPLICA package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. diff --git a/doc/pair_adp.html b/doc/pair_adp.html index 7bbfd6349b..1013ed6d75 100644 --- a/doc/pair_adp.html +++ b/doc/pair_adp.html @@ -140,7 +140,7 @@ an input script that reads a restart file.

    Restrictions:

    -

    This pair style is part of the "manybody" package. It is only enabled +

    This pair style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default).

    Related commands: diff --git a/doc/pair_adp.txt b/doc/pair_adp.txt index f064a89c69..cf66af91ca 100644 --- a/doc/pair_adp.txt +++ b/doc/pair_adp.txt @@ -137,7 +137,7 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This pair style is part of the "manybody" package. It is only enabled +This pair style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default). [Related commands:] diff --git a/doc/pair_airebo.html b/doc/pair_airebo.html index 53ff4d27e0..290245bed3 100644 --- a/doc/pair_airebo.html +++ b/doc/pair_airebo.html @@ -136,7 +136,7 @@ script that reads a restart file.

    Restrictions:

    -

    These pair styles are part of the "manybody" package. They are only +

    These pair styles are part of the MANYBODY package. They are only enabled if LAMMPS was built with that package (which it is by default). See the Making LAMMPS section for more info. diff --git a/doc/pair_airebo.txt b/doc/pair_airebo.txt index 7bff8b7d28..5d552132fd 100644 --- a/doc/pair_airebo.txt +++ b/doc/pair_airebo.txt @@ -132,7 +132,7 @@ These pair styles can only be used via the {pair} keyword of the [Restrictions:] -These pair styles are part of the "manybody" package. They are only +These pair styles are part of the MANYBODY package. They are only enabled if LAMMPS was built with that package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_born.html b/doc/pair_born.html index adf9a42c25..e396552aad 100644 --- a/doc/pair_born.html +++ b/doc/pair_born.html @@ -96,7 +96,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -139,8 +139,8 @@ respa command. They do not support the inner,

    Restrictions:

    -

    The born/coul/long style is part of the "kspace" package. It is -only enabled if LAMMPS was built with that package (which it is by +

    The born/coul/long style is part of the KSPACE package. It is only +enabled if LAMMPS was built with that package (which it is by default). See the Making LAMMPS section for more info.

    diff --git a/doc/pair_born.txt b/doc/pair_born.txt index 3b6939af7f..56e1515dae 100644 --- a/doc/pair_born.txt +++ b/doc/pair_born.txt @@ -91,7 +91,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -134,8 +134,8 @@ respa"_run_style.html command. They do not support the {inner}, [Restrictions:] -The {born/coul/long} style is part of the "kspace" package. It is -only enabled if LAMMPS was built with that package (which it is by +The {born/coul/long} style is part of the KSPACE package. It is only +enabled if LAMMPS was built with that package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_buck.html b/doc/pair_buck.html index 7d26f67962..b0d50311ee 100644 --- a/doc/pair_buck.html +++ b/doc/pair_buck.html @@ -117,7 +117,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -158,8 +158,8 @@ respa command. They do not support the inner,

    Restrictions:

    -

    The buck/coul/long style is part of the "kspace" package. It is -only enabled if LAMMPS was built with that package (which it is by +

    The buck/coul/long style is part of the KSPACE package. It is only +enabled if LAMMPS was built with that package (which it is by default). See the Making LAMMPS section for more info.

    diff --git a/doc/pair_buck.txt b/doc/pair_buck.txt index c173195d9c..40e095fb64 100644 --- a/doc/pair_buck.txt +++ b/doc/pair_buck.txt @@ -108,7 +108,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -149,8 +149,8 @@ respa"_run_style.html command. They do not support the {inner}, [Restrictions:] -The {buck/coul/long} style is part of the "kspace" package. It is -only enabled if LAMMPS was built with that package (which it is by +The {buck/coul/long} style is part of the KSPACE package. It is only +enabled if LAMMPS was built with that package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_buck_coul.html b/doc/pair_buck_coul.html index a9c0b75094..cfb237e58d 100644 --- a/doc/pair_buck_coul.html +++ b/doc/pair_buck_coul.html @@ -134,8 +134,8 @@ details.

    Restrictions:

    -

    This style is part of the "user-ewaldn" package. It is only enabled -if LAMMPS was built with that package. See the Making +

    This style is part of the USER-EWALDN package. It is only enabled if +LAMMPS was built with that package. See the Making LAMMPS section for more info.

    Related commands: diff --git a/doc/pair_buck_coul.txt b/doc/pair_buck_coul.txt index d306dc03fb..16638246a9 100644 --- a/doc/pair_buck_coul.txt +++ b/doc/pair_buck_coul.txt @@ -126,8 +126,8 @@ details. [Restrictions:] -This style is part of the "user-ewaldn" package. It is only enabled -if LAMMPS was built with that package. See the "Making +This style is part of the USER-EWALDN package. It is only enabled if +LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. [Related commands:] diff --git a/doc/pair_charmm.html b/doc/pair_charmm.html index 2d67fb2bb9..0f1b7c572e 100644 --- a/doc/pair_charmm.html +++ b/doc/pair_charmm.html @@ -124,7 +124,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -176,11 +176,11 @@ support the pair keyword of run_style respa. See the

    Restrictions:

    The lj/charmm/coul/charmm and lj/charmm/coul/charmm/implicit -styles are part of the "molecule" package. The lj/charmm/coul/long -style is part of the "kspace" package. They are only enabled if -LAMMPS was built with those packages. See the Making +styles are part of the MOLECULE package. The lj/charmm/coul/long +style is part of the KSPACE package. They are only enabled if LAMMPS +was built with those packages. See the Making LAMMPS section for more info. Note that -the molecule and kspace packages are installed by default. +the MOLECULE and KSPACE packages are installed by default.

    Related commands:

    diff --git a/doc/pair_charmm.txt b/doc/pair_charmm.txt index a6540c5c30..7e38167b27 100644 --- a/doc/pair_charmm.txt +++ b/doc/pair_charmm.txt @@ -113,7 +113,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -165,11 +165,11 @@ support the {pair} keyword of run_style respa. See the [Restrictions:] The {lj/charmm/coul/charmm} and {lj/charmm/coul/charmm/implicit} -styles are part of the "molecule" package. The {lj/charmm/coul/long} -style is part of the "kspace" package. They are only enabled if -LAMMPS was built with those packages. See the "Making +styles are part of the MOLECULE package. The {lj/charmm/coul/long} +style is part of the KSPACE package. They are only enabled if LAMMPS +was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. Note that -the molecule and kspace packages are installed by default. +the MOLECULE and KSPACE packages are installed by default. [Related commands:] diff --git a/doc/pair_class2.html b/doc/pair_class2.html index 217dd9a71d..f379c35fcc 100644 --- a/doc/pair_class2.html +++ b/doc/pair_class2.html @@ -115,7 +115,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -160,8 +160,8 @@ support the inner, middle, outer keywords.

    Restrictions:

    -

    These styles are part of the "class2" package. They are only enabled -if LAMMPS was built with that package. See the Making +

    These styles are part of the CLASS2 package. They are only enabled if +LAMMPS was built with that package. See the Making LAMMPS section for more info.

    Related commands: diff --git a/doc/pair_class2.txt b/doc/pair_class2.txt index 25fa72b673..881b458f35 100644 --- a/doc/pair_class2.txt +++ b/doc/pair_class2.txt @@ -104,7 +104,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -149,8 +149,8 @@ support the {inner}, {middle}, {outer} keywords. [Restrictions:] -These styles are part of the "class2" package. They are only enabled -if LAMMPS was built with that package. See the "Making +These styles are part of the CLASS2 package. They are only enabled if +LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. [Related commands:] diff --git a/doc/pair_cmm.html b/doc/pair_cmm.html index 2555321943..766904a07e 100644 --- a/doc/pair_cmm.html +++ b/doc/pair_cmm.html @@ -132,7 +132,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -178,8 +178,8 @@ See the run_style command for details.

    Restrictions:

    -

    All of the cg/cmm pair styles are part of the "user-cg-cmm" package. -The cg/cmm/coul/long style also requires the "kspace" package to be +

    All of the cg/cmm pair styles are part of the USER-CG-CMM package. +The cg/cmm/coul/long style also requires the KSPACE package to be built (which is enabled by default). They are only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info. diff --git a/doc/pair_cmm.txt b/doc/pair_cmm.txt index d0e5d058fb..b330de4915 100644 --- a/doc/pair_cmm.txt +++ b/doc/pair_cmm.txt @@ -120,7 +120,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -166,8 +166,8 @@ See the "run_style"_run_style.html command for details. [Restrictions:] -All of the cg/cmm pair styles are part of the "user-cg-cmm" package. -The {cg/cmm/coul/long} style also requires the "kspace" package to be +All of the cg/cmm pair styles are part of the USER-CG-CMM package. +The {cg/cmm/coul/long} style also requires the KSPACE package to be built (which is enabled by default). They are only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_colloid.html b/doc/pair_colloid.html index e1a5d7bdbf..7fb70fa85f 100644 --- a/doc/pair_colloid.html +++ b/doc/pair_colloid.html @@ -155,7 +155,7 @@ to be specified in an input script that reads a restart file.

    Restrictions:

    -

    This style is part of the "colloid" package. It is only enabled if +

    This style is part of the COLLOID package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/pair_colloid.txt b/doc/pair_colloid.txt index 4da606c035..7a519852e8 100644 --- a/doc/pair_colloid.txt +++ b/doc/pair_colloid.txt @@ -152,7 +152,7 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This style is part of the "colloid" package. It is only enabled if +This style is part of the COLLOID package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_comb.html b/doc/pair_comb.html index 60947dba4c..3c2f35f354 100644 --- a/doc/pair_comb.html +++ b/doc/pair_comb.html @@ -190,7 +190,7 @@ restart file.

    Restrictions:

    -

    This pair style is part of the "manybody" package. It is only enabled +

    This pair style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default). See the Making LAMMPS section for more info.

    diff --git a/doc/pair_comb.txt b/doc/pair_comb.txt index 19055590fe..0b2cb0ae11 100644 --- a/doc/pair_comb.txt +++ b/doc/pair_comb.txt @@ -187,7 +187,7 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This pair style is part of the "manybody" package. It is only enabled +This pair style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_coul.html b/doc/pair_coul.html index b516384440..b0d9d858ce 100644 --- a/doc/pair_coul.html +++ b/doc/pair_coul.html @@ -99,7 +99,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -143,7 +143,7 @@ to be specified in an input script that reads a restart file.

    Restrictions:

    -

    The coul/long style is part of the "kspace" package. It is only +

    The coul/long style is part of the KSPACE package. It is only enabled if LAMMPS was built with that package (which it is by default). See the Making LAMMPS section for more info. diff --git a/doc/pair_coul.txt b/doc/pair_coul.txt index 7a17ef2d2d..4fb60c2693 100644 --- a/doc/pair_coul.txt +++ b/doc/pair_coul.txt @@ -93,7 +93,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -137,7 +137,7 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -The {coul/long} style is part of the "kspace" package. It is only +The {coul/long} style is part of the KSPACE package. It is only enabled if LAMMPS was built with that package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_dipole.html b/doc/pair_dipole.html index 6baba2864d..99d02a36e0 100644 --- a/doc/pair_dipole.html +++ b/doc/pair_dipole.html @@ -153,11 +153,11 @@ to be specified in an input script that reads a restart file.

    Restrictions:

    -

    The dipole/cut style is part of the "dipole" package. It is only +

    The dipole/cut style is part of the DIPOLE package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    -

    The dipole/sf style is part of the "user-misc" package. It is only +

    The dipole/sf style is part of the USER-MISC package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/pair_dipole.txt b/doc/pair_dipole.txt index 55c8abf62f..bb735d7a45 100755 --- a/doc/pair_dipole.txt +++ b/doc/pair_dipole.txt @@ -147,11 +147,11 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -The {dipole/cut} style is part of the "dipole" package. It is only +The {dipole/cut} style is part of the DIPOLE package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. -The {dipole/sf} style is part of the "user-misc" package. It is only +The {dipole/sf} style is part of the USER-MISC package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_dsmc.html b/doc/pair_dsmc.html index 4e01bbd56c..11d1481d5d 100644 --- a/doc/pair_dsmc.html +++ b/doc/pair_dsmc.html @@ -122,7 +122,7 @@ continued past the restart time.

    Restrictions:

    -

    This style is part of the "mc" package. It is only enabled if LAMMPS +

    This style is part of the MC package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/pair_dsmc.txt b/doc/pair_dsmc.txt index cc17e20fe2..0f430d394a 100644 --- a/doc/pair_dsmc.txt +++ b/doc/pair_dsmc.txt @@ -119,7 +119,7 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This style is part of the "mc" package. It is only enabled if LAMMPS +This style is part of the MC package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_eam.html b/doc/pair_eam.html index 663003a109..3584d06a9e 100644 --- a/doc/pair_eam.html +++ b/doc/pair_eam.html @@ -372,7 +372,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -410,15 +410,15 @@ an input script that reads a restart file.

    Restrictions:

    -

    All of these styles except the eam/cd style are part of the -"manybody" package. They are only enabled if LAMMPS was built with -that package (which it is by default). See the Making +

    All of these styles except the eam/cd style are part of the MANYBODY +package. They are only enabled if LAMMPS was built with that package +(which it is by default). See the Making LAMMPS section for more info.

    -

    The eam/cd style is part of the "user-misc" package and also -requires the "manybody" package. It is only enabled if LAMMPS was -built with those packages. See the Making -LAMMPS section for more info. +

    The eam/cd style is part of the USER-MISC package and also requires +the MANYBODY package. It is only enabled if LAMMPS was built with +those packages. See the Making LAMMPS +section for more info.

    Related commands:

    diff --git a/doc/pair_eam.txt b/doc/pair_eam.txt index 7153cef708..5bc1779cb9 100644 --- a/doc/pair_eam.txt +++ b/doc/pair_eam.txt @@ -360,7 +360,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -398,15 +398,15 @@ The eam pair styles can only be used via the {pair} keyword of the [Restrictions:] -All of these styles except the {eam/cd} style are part of the -"manybody" package. They are only enabled if LAMMPS was built with -that package (which it is by default). See the "Making +All of these styles except the {eam/cd} style are part of the MANYBODY +package. They are only enabled if LAMMPS was built with that package +(which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info. -The {eam/cd} style is part of the "user-misc" package and also -requires the "manybody" package. It is only enabled if LAMMPS was -built with those packages. See the "Making -LAMMPS"_Section_start.html#start_3 section for more info. +The {eam/cd} style is part of the USER-MISC package and also requires +the MANYBODY package. It is only enabled if LAMMPS was built with +those packages. See the "Making LAMMPS"_Section_start.html#start_3 +section for more info. [Related commands:] diff --git a/doc/pair_eff.html b/doc/pair_eff.html index 3bf46fef4a..a2aaa1a882 100644 --- a/doc/pair_eff.html +++ b/doc/pair_eff.html @@ -252,7 +252,7 @@ to be specified in an input script that reads a restart file.

    Restrictions:

    These pair styles will only be enabled if LAMMPS is built with the -"user-eff" package. It will only be enabled if LAMMPS was built with +USER-EFF package. It will only be enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/pair_eff.txt b/doc/pair_eff.txt index 11f0fb9600..7e38770102 100644 --- a/doc/pair_eff.txt +++ b/doc/pair_eff.txt @@ -249,7 +249,7 @@ These pair styles can only be used via the {pair} keyword of the [Restrictions:] These pair styles will only be enabled if LAMMPS is built with the -"user-eff" package. It will only be enabled if LAMMPS was built with +USER-EFF package. It will only be enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_eim.html b/doc/pair_eim.html index cfeead5d92..b43368617c 100644 --- a/doc/pair_eim.html +++ b/doc/pair_eim.html @@ -134,7 +134,7 @@ needs.

    Restrictions:

    -

    This style is part of the "manybody" package. It is only enabled if +

    This style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default).

    Related commands: diff --git a/doc/pair_eim.txt b/doc/pair_eim.txt index 411f64c254..240e551b85 100644 --- a/doc/pair_eim.txt +++ b/doc/pair_eim.txt @@ -131,7 +131,7 @@ needs. [Restrictions:] -This style is part of the "manybody" package. It is only enabled if +This style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default). [Related commands:] diff --git a/doc/pair_gayberne.html b/doc/pair_gayberne.html index 77e11eaa05..e3d249ae4b 100644 --- a/doc/pair_gayberne.html +++ b/doc/pair_gayberne.html @@ -139,7 +139,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -185,7 +185,7 @@ to be specified in an input script that reads a restart file.

    Restrictions:

    -

    The gayberne style is part of the "asphere" package. It is only +

    The gayberne style is part of the ASPHERE package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/pair_gayberne.txt b/doc/pair_gayberne.txt index 6a0f7f5bce..6ff0f16dd5 100755 --- a/doc/pair_gayberne.txt +++ b/doc/pair_gayberne.txt @@ -135,7 +135,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -181,7 +181,7 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -The {gayberne} style is part of the "asphere" package. It is only +The {gayberne} style is part of the ASPHERE package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_gran.html b/doc/pair_gran.html index 9e42833bfa..9e1bd6cddf 100644 --- a/doc/pair_gran.html +++ b/doc/pair_gran.html @@ -177,7 +177,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -209,9 +209,9 @@ specified in an input script that reads a restart file.

    Restrictions: none

    -

    All the granular pair styles are part of the "granular" package. It -is only enabled if LAMMPS was built with that package. See the -Making LAMMPS section for more info. +

    All the granular pair styles are part of the GRANULAR package. It is +only enabled if LAMMPS was built with that package. See the Making +LAMMPS section for more info.

    These pair styles require that atoms store torque and angular velocity (omega) as defined by the atom_style. They also diff --git a/doc/pair_gran.txt b/doc/pair_gran.txt index c1ea6710c1..ec11abea35 100644 --- a/doc/pair_gran.txt +++ b/doc/pair_gran.txt @@ -166,7 +166,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -198,9 +198,9 @@ These pair styles can only be used via the {pair} keyword of the [Restrictions:] none -All the granular pair styles are part of the "granular" package. It -is only enabled if LAMMPS was built with that package. See the -"Making LAMMPS"_Section_start.html#start_3 section for more info. +All the granular pair styles are part of the GRANULAR package. It is +only enabled if LAMMPS was built with that package. See the "Making +LAMMPS"_Section_start.html#start_3 section for more info. These pair styles require that atoms store torque and angular velocity (omega) as defined by the "atom_style"_atom_style.html. They also diff --git a/doc/pair_gromacs.html b/doc/pair_gromacs.html index 322549cfaa..9b17b09936 100644 --- a/doc/pair_gromacs.html +++ b/doc/pair_gromacs.html @@ -99,7 +99,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. diff --git a/doc/pair_gromacs.txt b/doc/pair_gromacs.txt index 344f51e963..a57253568e 100644 --- a/doc/pair_gromacs.txt +++ b/doc/pair_gromacs.txt @@ -92,7 +92,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_lj.html b/doc/pair_lj.html index a15688735a..53a058b324 100644 --- a/doc/pair_lj.html +++ b/doc/pair_lj.html @@ -180,7 +180,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -232,9 +232,9 @@ See the run_style command for details.

    Restrictions:

    The lj/cut/coul/long and lj/cut/coul/long/tip4p styles are part of -the "kspace" package. They are only enabled if LAMMPS was built with +the KSPACE package. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS -section for more info. Note that the kspace package is installed by +section for more info. Note that the KSPACE package is installed by default.

    Related commands: diff --git a/doc/pair_lj.txt b/doc/pair_lj.txt index 93f371cbab..09441a9d56 100644 --- a/doc/pair_lj.txt +++ b/doc/pair_lj.txt @@ -163,7 +163,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -215,9 +215,9 @@ See the "run_style"_run_style.html command for details. [Restrictions:] The {lj/cut/coul/long} and {lj/cut/coul/long/tip4p} styles are part of -the "kspace" package. They are only enabled if LAMMPS was built with +the KSPACE package. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 -section for more info. Note that the kspace package is installed by +section for more info. Note that the KSPACE package is installed by default. [Related commands:] diff --git a/doc/pair_lj96.html b/doc/pair_lj96.html index 6e0cbbb840..f32391b9af 100644 --- a/doc/pair_lj96.html +++ b/doc/pair_lj96.html @@ -58,7 +58,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. diff --git a/doc/pair_lj96.txt b/doc/pair_lj96.txt index 84ddd5b2bf..96fe64076e 100644 --- a/doc/pair_lj96.txt +++ b/doc/pair_lj96.txt @@ -53,7 +53,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_lj_coul.html b/doc/pair_lj_coul.html index a93365fd94..b495c4d564 100644 --- a/doc/pair_lj_coul.html +++ b/doc/pair_lj_coul.html @@ -138,8 +138,8 @@ details.

    Restrictions:

    -

    This style is part of the "user-ewaldn" package. It is only enabled -if LAMMPS was built with that package. See the Making +

    This style is part of the USER-EWALDN package. It is only enabled if +LAMMPS was built with that package. See the Making LAMMPS section for more info.

    Related commands: diff --git a/doc/pair_lj_coul.txt b/doc/pair_lj_coul.txt index af695001e3..e731ee3424 100644 --- a/doc/pair_lj_coul.txt +++ b/doc/pair_lj_coul.txt @@ -130,8 +130,8 @@ details. [Restrictions:] -This style is part of the "user-ewaldn" package. It is only enabled -if LAMMPS was built with that package. See the "Making +This style is part of the USER-EWALDN package. It is only enabled if +LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. [Related commands:] diff --git a/doc/pair_lj_expand.html b/doc/pair_lj_expand.html index c1c4212615..29b56468cb 100644 --- a/doc/pair_lj_expand.html +++ b/doc/pair_lj_expand.html @@ -62,7 +62,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. diff --git a/doc/pair_lj_expand.txt b/doc/pair_lj_expand.txt index 7ec8b8e8c1..4efad12035 100644 --- a/doc/pair_lj_expand.txt +++ b/doc/pair_lj_expand.txt @@ -57,7 +57,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_lj_sf.html b/doc/pair_lj_sf.html index 42cad6d0e4..71034f6139 100644 --- a/doc/pair_lj_sf.html +++ b/doc/pair_lj_sf.html @@ -77,8 +77,8 @@ to be specified in an input script that reads a restart file.

    Restrictions:

    -

    This pair style is part of the "user-misc" package. It is only -enabled if LAMMPS was built with that package. See the Making +

    This pair style is part of the USER-MISC package. It is only enabled +if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    Related commands: diff --git a/doc/pair_lj_sf.txt b/doc/pair_lj_sf.txt index 8c0b65da2e..aade3f97a5 100644 --- a/doc/pair_lj_sf.txt +++ b/doc/pair_lj_sf.txt @@ -74,8 +74,8 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This pair style is part of the "user-misc" package. It is only -enabled if LAMMPS was built with that package. See the "Making +This pair style is part of the USER-MISC package. It is only enabled +if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. [Related commands:] diff --git a/doc/pair_lj_smooth.html b/doc/pair_lj_smooth.html index d8ad196c7e..bffb1716ec 100644 --- a/doc/pair_lj_smooth.html +++ b/doc/pair_lj_smooth.html @@ -70,7 +70,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. diff --git a/doc/pair_lj_smooth.txt b/doc/pair_lj_smooth.txt index e11954d468..5bbf2c48d8 100644 --- a/doc/pair_lj_smooth.txt +++ b/doc/pair_lj_smooth.txt @@ -66,7 +66,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_lubricate.html b/doc/pair_lubricate.html index 90455f0411..63df12a6d8 100644 --- a/doc/pair_lubricate.html +++ b/doc/pair_lubricate.html @@ -124,7 +124,7 @@ to be specified in an input script that reads a restart file.

    Restrictions:

    -

    This style is part of the "colloid" package. It is only enabled if +

    This style is part of the COLLOID package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/pair_lubricate.txt b/doc/pair_lubricate.txt index cb925f4288..b8f758cb8d 100644 --- a/doc/pair_lubricate.txt +++ b/doc/pair_lubricate.txt @@ -121,7 +121,7 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This style is part of the "colloid" package. It is only enabled if +This style is part of the COLLOID package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_meam.html b/doc/pair_meam.html index 4001a5cae4..f0dd319464 100644 --- a/doc/pair_meam.html +++ b/doc/pair_meam.html @@ -331,9 +331,9 @@ script that reads a restart file.

    Restrictions:

    -

    This style is part of the "meam" package. It is only enabled if -LAMMPS was built with that package, which also requires the MEAM -library be built and linked with LAMMPS. See the Making +

    This style is part of the MEAM package. It is only enabled if LAMMPS +was built with that package, which also requires the MEAM library be +built and linked with LAMMPS. See the Making LAMMPS section for more info.

    Related commands: diff --git a/doc/pair_meam.txt b/doc/pair_meam.txt index 12bae3092d..ed2ad404d4 100644 --- a/doc/pair_meam.txt +++ b/doc/pair_meam.txt @@ -328,9 +328,9 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This style is part of the "meam" package. It is only enabled if -LAMMPS was built with that package, which also requires the MEAM -library be built and linked with LAMMPS. See the "Making +This style is part of the MEAM package. It is only enabled if LAMMPS +was built with that package, which also requires the MEAM library be +built and linked with LAMMPS. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. [Related commands:] diff --git a/doc/pair_morse.html b/doc/pair_morse.html index 8aaf1b4de2..bdb1af6548 100644 --- a/doc/pair_morse.html +++ b/doc/pair_morse.html @@ -60,7 +60,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. diff --git a/doc/pair_morse.txt b/doc/pair_morse.txt index d6f8a6fd30..eb9d78cf6d 100644 --- a/doc/pair_morse.txt +++ b/doc/pair_morse.txt @@ -54,7 +54,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_peri.html b/doc/pair_peri.html index b119d01a03..4dbf57a000 100644 --- a/doc/pair_peri.html +++ b/doc/pair_peri.html @@ -102,7 +102,7 @@ to be specified in an input script that reads a restart file.

    Restrictions:

    -

    The peri/pmb and peri/lps styles are part of the "peri" +

    The peri/pmb and peri/lps styles are part of the PERI package. They are only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info. diff --git a/doc/pair_peri.txt b/doc/pair_peri.txt index 3a77477944..080508b37f 100644 --- a/doc/pair_peri.txt +++ b/doc/pair_peri.txt @@ -98,7 +98,7 @@ These pair styles can only be used via the {pair} keyword of the [Restrictions:] -The {peri/pmb} and {peri/lps} styles are part of the "peri" +The {peri/pmb} and {peri/lps} styles are part of the PERI package. They are only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_reax_c.html b/doc/pair_reax_c.html index 94c3e5322c..c4a27801ee 100644 --- a/doc/pair_reax_c.html +++ b/doc/pair_reax_c.html @@ -243,8 +243,8 @@ script that reads a restart file.

    Restrictions:

    -

    This pair style is part of the "user-reaxc" package. It is only -enabled if LAMMPS was built with that package. See the Making +

    This pair style is part of the USER-REAXC package. It is only enabled +if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    The ReaxFF potential files provided with LAMMPS in the potentials diff --git a/doc/pair_reax_c.txt b/doc/pair_reax_c.txt index 5c4c164336..6706ab687f 100644 --- a/doc/pair_reax_c.txt +++ b/doc/pair_reax_c.txt @@ -239,8 +239,8 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This pair style is part of the "user-reaxc" package. It is only -enabled if LAMMPS was built with that package. See the "Making +This pair style is part of the USER-REAXC package. It is only enabled +if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. The ReaxFF potential files provided with LAMMPS in the potentials diff --git a/doc/pair_resquared.html b/doc/pair_resquared.html index 6dc4367b58..c5bd317a70 100644 --- a/doc/pair_resquared.html +++ b/doc/pair_resquared.html @@ -152,7 +152,7 @@ discussed in this section of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues.

    -

    These accelerated styles are part of the "user-cuda", "gpu", and "opt" +

    These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the Making LAMMPS section for more info. @@ -205,7 +205,7 @@ command.

    Restrictions:

    -

    This style is part of the "asphere" package. It is only enabled if +

    This style is part of the ASPHERE package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/pair_resquared.txt b/doc/pair_resquared.txt index 1315cc4e87..71d50e8ebe 100755 --- a/doc/pair_resquared.txt +++ b/doc/pair_resquared.txt @@ -148,7 +148,7 @@ discussed in "this section"_Section_accelerate.html of the manual. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. -These accelerated styles are part of the "user-cuda", "gpu", and "opt" +These accelerated styles are part of the USER-CUDA, GPU, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. @@ -201,7 +201,7 @@ command"_run_style.html. [Restrictions:] -This style is part of the "asphere" package. It is only enabled if +This style is part of the ASPHERE package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_sw.html b/doc/pair_sw.html index 9789f23e3b..6267d6ba2e 100644 --- a/doc/pair_sw.html +++ b/doc/pair_sw.html @@ -159,7 +159,7 @@ script that reads a restart file.

    Restrictions:

    -

    This pair style is part of the "manybody" package. It is only enabled +

    This pair style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default). See the Making LAMMPS section for more info.

    diff --git a/doc/pair_sw.txt b/doc/pair_sw.txt index c6083a3fe1..1b62af869b 100644 --- a/doc/pair_sw.txt +++ b/doc/pair_sw.txt @@ -156,7 +156,7 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This pair style is part of the "manybody" package. It is only enabled +This pair style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_tersoff.html b/doc/pair_tersoff.html index bcec40982a..ed15a307a1 100644 --- a/doc/pair_tersoff.html +++ b/doc/pair_tersoff.html @@ -180,7 +180,7 @@ script that reads a restart file.

    Restrictions:

    -

    This pair style is part of the "manybody" package. It is only enabled +

    This pair style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default). See the Making LAMMPS section for more info.

    diff --git a/doc/pair_tersoff.txt b/doc/pair_tersoff.txt index d5c9eb8572..f6cfd83169 100644 --- a/doc/pair_tersoff.txt +++ b/doc/pair_tersoff.txt @@ -177,7 +177,7 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This pair style is part of the "manybody" package. It is only enabled +This pair style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_tersoff_zbl.html b/doc/pair_tersoff_zbl.html index 8fda7458db..84e4c85fe5 100644 --- a/doc/pair_tersoff_zbl.html +++ b/doc/pair_tersoff_zbl.html @@ -200,7 +200,7 @@ script that reads a restart file.

    Restrictions:

    -

    This pair style is part of the "manybody" package. It is only enabled +

    This pair style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default). See the Making LAMMPS section for more info.

    diff --git a/doc/pair_tersoff_zbl.txt b/doc/pair_tersoff_zbl.txt index 34aa45a2cf..ade09bd52d 100644 --- a/doc/pair_tersoff_zbl.txt +++ b/doc/pair_tersoff_zbl.txt @@ -197,7 +197,7 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This pair style is part of the "manybody" package. It is only enabled +This pair style is part of the MANYBODY package. It is only enabled if LAMMPS was built with that package (which it is by default). See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/pair_yukawa_colloid.html b/doc/pair_yukawa_colloid.html index 4c5d472a48..cdd706450d 100644 --- a/doc/pair_yukawa_colloid.html +++ b/doc/pair_yukawa_colloid.html @@ -106,7 +106,7 @@ to be specified in an input script that reads a restart file.

    Restrictions:

    -

    This style is part of the "colloid" package. It is only enabled if +

    This style is part of the COLLOID package. It is only enabled if LAMMPS was built with that package. See the Making LAMMPS section for more info.

    diff --git a/doc/pair_yukawa_colloid.txt b/doc/pair_yukawa_colloid.txt index 4cce253405..ee09adf696 100644 --- a/doc/pair_yukawa_colloid.txt +++ b/doc/pair_yukawa_colloid.txt @@ -103,7 +103,7 @@ This pair style can only be used via the {pair} keyword of the [Restrictions:] -This style is part of the "colloid" package. It is only enabled if +This style is part of the COLLOID package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. diff --git a/doc/prd.html b/doc/prd.html index ae9cbcda4a..270a48c0a6 100644 --- a/doc/prd.html +++ b/doc/prd.html @@ -270,7 +270,7 @@ value for the first event in the new run will be slightly off.

    Restrictions:

    -

    This command can only be used if LAMMPS was built with the "replica" +

    This command can only be used if LAMMPS was built with the REPLICA package. See the Making LAMMPS section for more info on packages.

    diff --git a/doc/prd.txt b/doc/prd.txt index 52f6820d83..33130c17b6 100644 --- a/doc/prd.txt +++ b/doc/prd.txt @@ -257,7 +257,7 @@ value for the first event in the new run will be slightly off. [Restrictions:] -This command can only be used if LAMMPS was built with the "replica" +This command can only be used if LAMMPS was built with the REPLICA package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. diff --git a/doc/tad.html b/doc/tad.html index ff74027e28..a454bf8671 100644 --- a/doc/tad.html +++ b/doc/tad.html @@ -269,7 +269,7 @@ are always monotonically increasing.

    Restrictions:

    -

    This command can only be used if LAMMPS was built with the "replica" +

    This command can only be used if LAMMPS was built with the REPLICA package. See the Making LAMMPS section for more info on packages.

    diff --git a/doc/tad.txt b/doc/tad.txt index 85115cfa25..f18edb0676 100644 --- a/doc/tad.txt +++ b/doc/tad.txt @@ -259,7 +259,7 @@ are always monotonically increasing. [Restrictions:] -This command can only be used if LAMMPS was built with the "replica" +This command can only be used if LAMMPS was built with the REPLICA package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages. diff --git a/doc/temper.html b/doc/temper.html index ce9f7e8b46..790cc891eb 100644 --- a/doc/temper.html +++ b/doc/temper.html @@ -124,7 +124,7 @@ example above with $w as the last argument.

    Restrictions:

    -

    This command can only be used if LAMMPS was built with the "replica" +

    This command can only be used if LAMMPS was built with the REPLICA package. See the Making LAMMPS section for more info on packages.

    diff --git a/doc/temper.txt b/doc/temper.txt index ac79b6e5d9..c7cda7cbec 100644 --- a/doc/temper.txt +++ b/doc/temper.txt @@ -121,7 +121,7 @@ example above with $w as the last argument. [Restrictions:] -This command can only be used if LAMMPS was built with the "replica" +This command can only be used if LAMMPS was built with the REPLICA package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info on packages.