diff --git a/doc/pair_cmm.html b/doc/pair_cmm.html index c65dda6861..f6033ded25 100644 --- a/doc/pair_cmm.html +++ b/doc/pair_cmm.html @@ -53,7 +53,7 @@ given by

as required for the CMM Coarse-grained MD parametrization discussed in -(Shinoda). Rc is the cutoff. +(Shinoda) and (DeVane). Rc is the cutoff.

Style cg/cmm/coul/cut adds a Coulombic pairwise interaction given by

@@ -167,4 +167,8 @@ pages for workarounds on this issue.

(Shinoda) Shinoda, DeVane, Klein, Mol Sim, 33, 27 (2007).

+ + +

(DeVane) Shinoda, DeVane, Klein, Soft Matter, 4, 2453-2462 (2008). +

diff --git a/doc/pair_cmm.txt b/doc/pair_cmm.txt index 868150e3e5..7ebd3141fc 100644 --- a/doc/pair_cmm.txt +++ b/doc/pair_cmm.txt @@ -47,7 +47,7 @@ given by :c,image(Eqs/pair_cmm.jpg) as required for the CMM Coarse-grained MD parametrization discussed in -"(Shinoda)"_#Shinoda. Rc is the cutoff. +"(Shinoda)"_#Shinoda and "(DeVane)"_#DeVane. Rc is the cutoff. Style {cg/cmm/coul/cut} adds a Coulombic pairwise interaction given by @@ -159,3 +159,7 @@ pages for workarounds on this issue. :link(Shinoda) [(Shinoda)] Shinoda, DeVane, Klein, Mol Sim, 33, 27 (2007). + +:link(DeVane) +[(DeVane)] Shinoda, DeVane, Klein, Soft Matter, 4, 2453-2462 (2008). + diff --git a/doc/reset_timestep.html b/doc/reset_timestep.html index 5fae614f9a..a59fb07bb1 100644 --- a/doc/reset_timestep.html +++ b/doc/reset_timestep.html @@ -59,7 +59,7 @@ temperature which ramps from Tstart to Tstop which may persist over several runs. If you change the timestep, you may change the target temperature.

-

Restting the timestep will clear the flags for computes +

Resetting the timestep will clear the flags for computes that may have calculated some quantity from a previous run. This means that quantity cannot be accessed by a variable in between runs until a new run is performed. See the variable diff --git a/doc/reset_timestep.txt b/doc/reset_timestep.txt index 9953fd4c52..c90925e4a5 100644 --- a/doc/reset_timestep.txt +++ b/doc/reset_timestep.txt @@ -56,7 +56,7 @@ temperature which ramps from Tstart to Tstop which may persist over several runs. If you change the timestep, you may change the target temperature. -Restting the timestep will clear the flags for "computes"_compute.html +Resetting the timestep will clear the flags for "computes"_compute.html that may have calculated some quantity from a previous run. This means that quantity cannot be accessed by a variable in between runs until a new run is performed. See the "variable"_variable.html