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update docs

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Axel Kohlmeyer 2020-07-06 14:12:37 -04:00
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doc/src/reset_mol_ids.rst
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@ -1,7 +1,7 @@
.. index:: reset_mol_ids
reset_mol_ids command
=================
=====================
Syntax
""""""
@ -33,10 +33,11 @@ atoms in the specified group are reset.
This can be useful to invoke after performing a reactive molecular
dynamics run with :doc:`fix bond/react <fix_bond_react>`, :doc:`fix
bond/create <fix_bond_create>`, or :doc:`fix bond/delete
<fix_bond_delete>`. It can also be useful after any simulation which
has lost molecules, e.g. via the :doc:`fix evaporate <fix_evaporate>`
command.
bond/create <fix_bond_create>`, or :doc:`fix bond/break
<fix_bond_break>`. It can also be useful after molecules have been
deleted with :doc:`delete_atoms <delete_atoms>` or after a simulation
which has lost molecules, e.g. via the :doc:`fix evaporate
<fix_evaporate>` command.
Restrictions
""""""""""""
@ -47,7 +48,8 @@ Related commands
:doc:`reset_ids <reset_ids>`, :doc:`fix bond/react <fix_bond_react>`,
:doc:`fix bond/create <fix_bond_create>`,
:doc:`fix bond/delete <fix_bond_delete>`,
:doc:`fix evaporate <fix_evaporate>`
:doc:`fix bond/break <fix_bond_break>`,
:doc:`fix evaporate <fix_evaporate>`,
:doc:`delete_atoms <delete_atoms>`
**Default:** none