From 7c3b8e014c7b6838fad830e7d1e7690181624372 Mon Sep 17 00:00:00 2001
From: Steve Plimpton <sjplimp@sandia.gov>
Date: Thu, 11 May 2017 10:15:28 -0600
Subject: [PATCH] rename some USER/misc dirs

---
 examples/USER/misc/{filter-corotate => filter_corotate}/data.bpti | 0
 .../USER/misc/{filter-corotate => filter_corotate}/data.peptide   | 0
 examples/USER/misc/{filter-corotate => filter_corotate}/in.bpti   | 0
 .../USER/misc/{filter-corotate => filter_corotate}/in.peptide     | 0
 .../{filter-corotate => filter_corotate}/log.10Mar2017.bpti.g++.1 | 0
 .../{filter-corotate => filter_corotate}/log.10Mar2017.bpti.g++.4 | 0
 .../log.10Mar2017.peptide.g++.1                                   | 0
 .../log.10Mar2017.peptide.g++.4                                   | 0
 examples/USER/misc/{gauss-diel => gauss_diel}/data.gauss-diel     | 0
 examples/USER/misc/{gauss-diel => gauss_diel}/in.gauss-diel       | 0
 examples/USER/misc/{gauss-diel => gauss_diel}/in.gauss-diel-cg    | 0
 examples/USER/misc/{gauss-diel => gauss_diel}/in.gauss-diel-split | 0
 examples/USER/misc/{gauss-diel => gauss_diel}/log.gauss-diel      | 0
 examples/USER/misc/{gauss-diel => gauss_diel}/log.gauss-diel-cg   | 0
 .../USER/misc/{gauss-diel => gauss_diel}/log.gauss-diel-split     | 0
 examples/USER/misc/{i-pi => ipi}/C.opt.tersoff                    | 0
 examples/USER/misc/{i-pi => ipi}/README                           | 0
 examples/USER/misc/{i-pi => ipi}/data.graphene                    | 0
 examples/USER/misc/{i-pi => ipi}/i-pi_input.xml                   | 0
 examples/USER/misc/{i-pi => ipi}/i-pi_positions.xyz               | 0
 examples/USER/misc/{i-pi => ipi}/in.graphene                      | 0
 .../data.bilayer-graphene                                         | 0
 .../data.graphene-adsorbant                                       | 0
 .../{kolmogorov-crespi => kolmogorov_crespi}/in.atom-diffusion    | 0
 .../{kolmogorov-crespi => kolmogorov_crespi}/in.bilayer-graphene  | 0
 .../{kolmogorov-crespi => kolmogorov_crespi}/log.atom-diffusion   | 0
 .../{kolmogorov-crespi => kolmogorov_crespi}/log.bilayer-graphene | 0
 27 files changed, 0 insertions(+), 0 deletions(-)
 rename examples/USER/misc/{filter-corotate => filter_corotate}/data.bpti (100%)
 rename examples/USER/misc/{filter-corotate => filter_corotate}/data.peptide (100%)
 rename examples/USER/misc/{filter-corotate => filter_corotate}/in.bpti (100%)
 rename examples/USER/misc/{filter-corotate => filter_corotate}/in.peptide (100%)
 rename examples/USER/misc/{filter-corotate => filter_corotate}/log.10Mar2017.bpti.g++.1 (100%)
 rename examples/USER/misc/{filter-corotate => filter_corotate}/log.10Mar2017.bpti.g++.4 (100%)
 rename examples/USER/misc/{filter-corotate => filter_corotate}/log.10Mar2017.peptide.g++.1 (100%)
 rename examples/USER/misc/{filter-corotate => filter_corotate}/log.10Mar2017.peptide.g++.4 (100%)
 rename examples/USER/misc/{gauss-diel => gauss_diel}/data.gauss-diel (100%)
 rename examples/USER/misc/{gauss-diel => gauss_diel}/in.gauss-diel (100%)
 rename examples/USER/misc/{gauss-diel => gauss_diel}/in.gauss-diel-cg (100%)
 rename examples/USER/misc/{gauss-diel => gauss_diel}/in.gauss-diel-split (100%)
 rename examples/USER/misc/{gauss-diel => gauss_diel}/log.gauss-diel (100%)
 rename examples/USER/misc/{gauss-diel => gauss_diel}/log.gauss-diel-cg (100%)
 rename examples/USER/misc/{gauss-diel => gauss_diel}/log.gauss-diel-split (100%)
 rename examples/USER/misc/{i-pi => ipi}/C.opt.tersoff (100%)
 rename examples/USER/misc/{i-pi => ipi}/README (100%)
 rename examples/USER/misc/{i-pi => ipi}/data.graphene (100%)
 rename examples/USER/misc/{i-pi => ipi}/i-pi_input.xml (100%)
 rename examples/USER/misc/{i-pi => ipi}/i-pi_positions.xyz (100%)
 rename examples/USER/misc/{i-pi => ipi}/in.graphene (100%)
 rename examples/USER/misc/{kolmogorov-crespi => kolmogorov_crespi}/data.bilayer-graphene (100%)
 rename examples/USER/misc/{kolmogorov-crespi => kolmogorov_crespi}/data.graphene-adsorbant (100%)
 rename examples/USER/misc/{kolmogorov-crespi => kolmogorov_crespi}/in.atom-diffusion (100%)
 rename examples/USER/misc/{kolmogorov-crespi => kolmogorov_crespi}/in.bilayer-graphene (100%)
 rename examples/USER/misc/{kolmogorov-crespi => kolmogorov_crespi}/log.atom-diffusion (100%)
 rename examples/USER/misc/{kolmogorov-crespi => kolmogorov_crespi}/log.bilayer-graphene (100%)

diff --git a/examples/USER/misc/filter-corotate/data.bpti b/examples/USER/misc/filter_corotate/data.bpti
similarity index 100%
rename from examples/USER/misc/filter-corotate/data.bpti
rename to examples/USER/misc/filter_corotate/data.bpti
diff --git a/examples/USER/misc/filter-corotate/data.peptide b/examples/USER/misc/filter_corotate/data.peptide
similarity index 100%
rename from examples/USER/misc/filter-corotate/data.peptide
rename to examples/USER/misc/filter_corotate/data.peptide
diff --git a/examples/USER/misc/filter-corotate/in.bpti b/examples/USER/misc/filter_corotate/in.bpti
similarity index 100%
rename from examples/USER/misc/filter-corotate/in.bpti
rename to examples/USER/misc/filter_corotate/in.bpti
diff --git a/examples/USER/misc/filter-corotate/in.peptide b/examples/USER/misc/filter_corotate/in.peptide
similarity index 100%
rename from examples/USER/misc/filter-corotate/in.peptide
rename to examples/USER/misc/filter_corotate/in.peptide
diff --git a/examples/USER/misc/filter-corotate/log.10Mar2017.bpti.g++.1 b/examples/USER/misc/filter_corotate/log.10Mar2017.bpti.g++.1
similarity index 100%
rename from examples/USER/misc/filter-corotate/log.10Mar2017.bpti.g++.1
rename to examples/USER/misc/filter_corotate/log.10Mar2017.bpti.g++.1
diff --git a/examples/USER/misc/filter-corotate/log.10Mar2017.bpti.g++.4 b/examples/USER/misc/filter_corotate/log.10Mar2017.bpti.g++.4
similarity index 100%
rename from examples/USER/misc/filter-corotate/log.10Mar2017.bpti.g++.4
rename to examples/USER/misc/filter_corotate/log.10Mar2017.bpti.g++.4
diff --git a/examples/USER/misc/filter-corotate/log.10Mar2017.peptide.g++.1 b/examples/USER/misc/filter_corotate/log.10Mar2017.peptide.g++.1
similarity index 100%
rename from examples/USER/misc/filter-corotate/log.10Mar2017.peptide.g++.1
rename to examples/USER/misc/filter_corotate/log.10Mar2017.peptide.g++.1
diff --git a/examples/USER/misc/filter-corotate/log.10Mar2017.peptide.g++.4 b/examples/USER/misc/filter_corotate/log.10Mar2017.peptide.g++.4
similarity index 100%
rename from examples/USER/misc/filter-corotate/log.10Mar2017.peptide.g++.4
rename to examples/USER/misc/filter_corotate/log.10Mar2017.peptide.g++.4
diff --git a/examples/USER/misc/gauss-diel/data.gauss-diel b/examples/USER/misc/gauss_diel/data.gauss-diel
similarity index 100%
rename from examples/USER/misc/gauss-diel/data.gauss-diel
rename to examples/USER/misc/gauss_diel/data.gauss-diel
diff --git a/examples/USER/misc/gauss-diel/in.gauss-diel b/examples/USER/misc/gauss_diel/in.gauss-diel
similarity index 100%
rename from examples/USER/misc/gauss-diel/in.gauss-diel
rename to examples/USER/misc/gauss_diel/in.gauss-diel
diff --git a/examples/USER/misc/gauss-diel/in.gauss-diel-cg b/examples/USER/misc/gauss_diel/in.gauss-diel-cg
similarity index 100%
rename from examples/USER/misc/gauss-diel/in.gauss-diel-cg
rename to examples/USER/misc/gauss_diel/in.gauss-diel-cg
diff --git a/examples/USER/misc/gauss-diel/in.gauss-diel-split b/examples/USER/misc/gauss_diel/in.gauss-diel-split
similarity index 100%
rename from examples/USER/misc/gauss-diel/in.gauss-diel-split
rename to examples/USER/misc/gauss_diel/in.gauss-diel-split
diff --git a/examples/USER/misc/gauss-diel/log.gauss-diel b/examples/USER/misc/gauss_diel/log.gauss-diel
similarity index 100%
rename from examples/USER/misc/gauss-diel/log.gauss-diel
rename to examples/USER/misc/gauss_diel/log.gauss-diel
diff --git a/examples/USER/misc/gauss-diel/log.gauss-diel-cg b/examples/USER/misc/gauss_diel/log.gauss-diel-cg
similarity index 100%
rename from examples/USER/misc/gauss-diel/log.gauss-diel-cg
rename to examples/USER/misc/gauss_diel/log.gauss-diel-cg
diff --git a/examples/USER/misc/gauss-diel/log.gauss-diel-split b/examples/USER/misc/gauss_diel/log.gauss-diel-split
similarity index 100%
rename from examples/USER/misc/gauss-diel/log.gauss-diel-split
rename to examples/USER/misc/gauss_diel/log.gauss-diel-split
diff --git a/examples/USER/misc/i-pi/C.opt.tersoff b/examples/USER/misc/ipi/C.opt.tersoff
similarity index 100%
rename from examples/USER/misc/i-pi/C.opt.tersoff
rename to examples/USER/misc/ipi/C.opt.tersoff
diff --git a/examples/USER/misc/i-pi/README b/examples/USER/misc/ipi/README
similarity index 100%
rename from examples/USER/misc/i-pi/README
rename to examples/USER/misc/ipi/README
diff --git a/examples/USER/misc/i-pi/data.graphene b/examples/USER/misc/ipi/data.graphene
similarity index 100%
rename from examples/USER/misc/i-pi/data.graphene
rename to examples/USER/misc/ipi/data.graphene
diff --git a/examples/USER/misc/i-pi/i-pi_input.xml b/examples/USER/misc/ipi/i-pi_input.xml
similarity index 100%
rename from examples/USER/misc/i-pi/i-pi_input.xml
rename to examples/USER/misc/ipi/i-pi_input.xml
diff --git a/examples/USER/misc/i-pi/i-pi_positions.xyz b/examples/USER/misc/ipi/i-pi_positions.xyz
similarity index 100%
rename from examples/USER/misc/i-pi/i-pi_positions.xyz
rename to examples/USER/misc/ipi/i-pi_positions.xyz
diff --git a/examples/USER/misc/i-pi/in.graphene b/examples/USER/misc/ipi/in.graphene
similarity index 100%
rename from examples/USER/misc/i-pi/in.graphene
rename to examples/USER/misc/ipi/in.graphene
diff --git a/examples/USER/misc/kolmogorov-crespi/data.bilayer-graphene b/examples/USER/misc/kolmogorov_crespi/data.bilayer-graphene
similarity index 100%
rename from examples/USER/misc/kolmogorov-crespi/data.bilayer-graphene
rename to examples/USER/misc/kolmogorov_crespi/data.bilayer-graphene
diff --git a/examples/USER/misc/kolmogorov-crespi/data.graphene-adsorbant b/examples/USER/misc/kolmogorov_crespi/data.graphene-adsorbant
similarity index 100%
rename from examples/USER/misc/kolmogorov-crespi/data.graphene-adsorbant
rename to examples/USER/misc/kolmogorov_crespi/data.graphene-adsorbant
diff --git a/examples/USER/misc/kolmogorov-crespi/in.atom-diffusion b/examples/USER/misc/kolmogorov_crespi/in.atom-diffusion
similarity index 100%
rename from examples/USER/misc/kolmogorov-crespi/in.atom-diffusion
rename to examples/USER/misc/kolmogorov_crespi/in.atom-diffusion
diff --git a/examples/USER/misc/kolmogorov-crespi/in.bilayer-graphene b/examples/USER/misc/kolmogorov_crespi/in.bilayer-graphene
similarity index 100%
rename from examples/USER/misc/kolmogorov-crespi/in.bilayer-graphene
rename to examples/USER/misc/kolmogorov_crespi/in.bilayer-graphene
diff --git a/examples/USER/misc/kolmogorov-crespi/log.atom-diffusion b/examples/USER/misc/kolmogorov_crespi/log.atom-diffusion
similarity index 100%
rename from examples/USER/misc/kolmogorov-crespi/log.atom-diffusion
rename to examples/USER/misc/kolmogorov_crespi/log.atom-diffusion
diff --git a/examples/USER/misc/kolmogorov-crespi/log.bilayer-graphene b/examples/USER/misc/kolmogorov_crespi/log.bilayer-graphene
similarity index 100%
rename from examples/USER/misc/kolmogorov-crespi/log.bilayer-graphene
rename to examples/USER/misc/kolmogorov_crespi/log.bilayer-graphene