From 77c46a48282179c0a3c1f50890a76597c1d251e7 Mon Sep 17 00:00:00 2001 From: sjplimp Date: Mon, 9 Nov 2009 18:37:37 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@3358 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/Section_modify.html | 17 ++++++++++++++--- doc/Section_modify.txt | 17 ++++++++++++++--- 2 files changed, 28 insertions(+), 6 deletions(-) diff --git a/doc/Section_modify.html b/doc/Section_modify.html index eb4e48ad57..753c1d9a20 100644 --- a/doc/Section_modify.html +++ b/doc/Section_modify.html @@ -164,11 +164,21 @@ class. See atom.h for details. grow re-allocate atom arrays to longer lengths copy copy info for one atom to another atom's array locations pack_comm store an atom's info in a buffer communicated every timestep +pack_comm_vel add velocity info to buffer +pack_comm_one store extra info unique to this atom style unpack_comm retrieve an atom's info from the buffer +unpack_comm_vel also retrieve velocity info +unpack_comm_one retreive extra info unique to this atom style pack_reverse store an atom's info in a buffer communicating partial forces +pack_reverse_one store extra info unique to this atom style unpack_reverse retrieve an atom's info from the buffer +unpack_reverse_one retreive extra info unique to this atom style pack_border store an atom's info in a buffer communicated on neighbor re-builds +pack_border_vel add velocity info to buffer +pack_border_one store extra info unique to this atom style unpack_border retrieve an atom's info from the buffer +unpack_border_vel also retrieve velocity info +unpack_border_one retreive extra info unique to this atom style pack_exchange store all an atom's info to migrate to another processor unpack_exchange retrieve an atom's info from the buffer size_restart number of restart quantities associated with proc's atoms @@ -180,9 +190,10 @@ class. See atom.h for details.

The constructor of the derived class sets values for several variables -that you must set when defining a new atom style. The atom arrays -themselves are defined in atom.cpp. Search for the word "customize" -and you will find locations you will need to modify. +that you must set when defining a new atom style, which are documented +in atom_vec.h. New atom arrays are defined in atom.cpp. Search for +the word "customize" and you will find locations you will need to +modify.

diff --git a/doc/Section_modify.txt b/doc/Section_modify.txt index 3aa6e8f974..af08b31842 100644 --- a/doc/Section_modify.txt +++ b/doc/Section_modify.txt @@ -161,11 +161,21 @@ class. See atom.h for details. grow: re-allocate atom arrays to longer lengths copy: copy info for one atom to another atom's array locations pack_comm: store an atom's info in a buffer communicated every timestep +pack_comm_vel: add velocity info to buffer +pack_comm_one: store extra info unique to this atom style unpack_comm: retrieve an atom's info from the buffer +unpack_comm_vel: also retrieve velocity info +unpack_comm_one: retreive extra info unique to this atom style pack_reverse: store an atom's info in a buffer communicating partial forces +pack_reverse_one: store extra info unique to this atom style unpack_reverse: retrieve an atom's info from the buffer +unpack_reverse_one: retreive extra info unique to this atom style pack_border: store an atom's info in a buffer communicated on neighbor re-builds +pack_border_vel: add velocity info to buffer +pack_border_one: store extra info unique to this atom style unpack_border: retrieve an atom's info from the buffer +unpack_border_vel: also retrieve velocity info +unpack_border_one: retreive extra info unique to this atom style pack_exchange: store all an atom's info to migrate to another processor unpack_exchange: retrieve an atom's info from the buffer size_restart: number of restart quantities associated with proc's atoms @@ -176,9 +186,10 @@ data_atom: parse an atom line from the data file memory_usage: tally memory allocated by atom arrays :tb(s=:) The constructor of the derived class sets values for several variables -that you must set when defining a new atom style. The atom arrays -themselves are defined in atom.cpp. Search for the word "customize" -and you will find locations you will need to modify. +that you must set when defining a new atom style, which are documented +in atom_vec.h. New atom arrays are defined in atom.cpp. Search for +the word "customize" and you will find locations you will need to +modify. :line