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# Ionic surfactant system: S12S
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units lj
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dimension 3
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atom_style full
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read_data data.gauss-diel
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pair_style hybrid/overlay &
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lj/cut 3.5 &
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lj/cut/coul/long 8.0 &
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gauss/cut 3.4 &
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coul/diel 2.5
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pair_modify shift yes
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dielectric 0.4255
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kspace_style pppm 0.0001
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kspace_modify mesh 30 30 30 order 3
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bond_style harmonic
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angle_style harmonic
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dihedral_style opls
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pair_coeff 1 1 lj/cut/coul/long 0.5 1.775 3.268 # HG HG
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pair_coeff 1 1 gauss/cut 0.1 2.549 0.1525
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pair_coeff 1 2 lj/cut 0.31623 1.5329 1.7206 # HG CM
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pair_coeff 1 3 lj/cut 0.31623 1.5329 1.7206 # HG CT
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pair_coeff 1 4 lj/cut/coul/long 0.05 1.75 4.375 # HG CI
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pair_coeff 1 4 gauss/cut 0.2805 1.45 0.112
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pair_coeff 1 4 coul/diel 78. 1.375 0.112
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pair_coeff 2 2 lj/cut 0.2000 1.2910 3.2275 # CM CM
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pair_coeff 2 3 lj/cut 0.2000 1.2910 3.2275 # CM CT
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pair_coeff 2 4 lj/cut 0.4472 1.1455 1.28585 # CM CI
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pair_coeff 3 3 lj/cut 1.95 1.291 3.2275 # CT CT
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pair_coeff 3 4 lj/cut 0.4472 1.1455 1.28585 # CT CI
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pair_coeff 4 4 lj/cut/coul/long 1.0 10. 1.12246 # CI CI
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bond_coeff 1 12650.0000 0.7500 # HG CM FROM TOP
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bond_coeff 2 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 3 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 4 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 5 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 6 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 7 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 8 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 9 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 10 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 11 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 12 12650.0000 0.5000 # CM CT FROM TOP
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angle_coeff 1 85.7600 109.5000 # HG CM CM FROM TOP
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angle_coeff 2 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 3 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 4 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 5 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 6 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 7 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 8 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 9 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 10 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 11 85.7600 111.0000 # CM CM CT FROM TOP
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dihedral_coeff 1 5.7431 -2.53241 5.0742 0.0 # HG CM CM CM FROM TOP
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dihedral_coeff 2 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 3 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 4 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 5 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 6 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 7 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 8 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 9 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 10 5.7431 -2.53241 5.0742 0.0 # CM CM CM CT FROM TOP
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timestep 0.002
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reset_timestep 0
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group cions type 4
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group sds subtract all cions
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velocity all create 1. 87287 dist gaussian
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neighbor 1.5 multi
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neigh_modify exclude molecule sds
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neigh_modify every 5 delay 0 check yes
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fix 1 all nve/limit 0.2
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fix 2 all langevin 1.0 1.0 0.05 18273
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thermo_style multi
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thermo 500
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run 2000
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@ -0,0 +1,93 @@
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# Ionic surfactant system: S12S
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units lj
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dimension 3
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atom_style full
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read_data data.gauss-diel
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pair_style hybrid/overlay &
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lj/cut 3.5 &
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lj/cut/coul/long 8.0 18.0 &
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gauss/cut 3.4 &
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coul/diel 2.5
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pair_modify shift yes
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dielectric 0.4255
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kspace_style pppm/cg 0.0001
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kspace_modify mesh 12 12 12 order 3
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bond_style harmonic
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angle_style harmonic
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dihedral_style opls
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pair_coeff 1 1 lj/cut/coul/long 0.5 1.775 3.268 # HG HG
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pair_coeff 1 1 gauss/cut 0.1 2.549 0.1525
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pair_coeff 1 2 lj/cut 0.31623 1.5329 1.7206 # HG CM
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pair_coeff 1 3 lj/cut 0.31623 1.5329 1.7206 # HG CT
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pair_coeff 1 4 lj/cut/coul/long 0.05 1.75 4.375 # HG CI
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pair_coeff 1 4 gauss/cut 0.2805 1.45 0.112
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pair_coeff 1 4 coul/diel 78. 1.375 0.112
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pair_coeff 2 2 lj/cut 0.2000 1.2910 3.2275 # CM CM
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pair_coeff 2 3 lj/cut 0.2000 1.2910 3.2275 # CM CT
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pair_coeff 2 4 lj/cut 0.4472 1.1455 1.28585 # CM CI
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pair_coeff 3 3 lj/cut 1.95 1.291 3.2275 # CT CT
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pair_coeff 3 4 lj/cut 0.4472 1.1455 1.28585 # CT CI
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pair_coeff 4 4 lj/cut/coul/long 1.0 10. 1.12246 # CI CI
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bond_coeff 1 12650.0000 0.7500 # HG CM FROM TOP
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bond_coeff 2 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 3 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 4 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 5 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 6 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 7 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 8 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 9 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 10 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 11 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 12 12650.0000 0.5000 # CM CT FROM TOP
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angle_coeff 1 85.7600 109.5000 # HG CM CM FROM TOP
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angle_coeff 2 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 3 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 4 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 5 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 6 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 7 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 8 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 9 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 10 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 11 85.7600 111.0000 # CM CM CT FROM TOP
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dihedral_coeff 1 5.7431 -2.53241 5.0742 0.0 # HG CM CM CM FROM TOP
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dihedral_coeff 2 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 3 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 4 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 5 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 6 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 7 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 8 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 9 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 10 5.7431 -2.53241 5.0742 0.0 # CM CM CM CT FROM TOP
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timestep 0.002
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reset_timestep 0
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group cions type 4
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group sds subtract all cions
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velocity all create 1. 87287 dist gaussian
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neighbor 1.5 multi
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neigh_modify exclude molecule sds
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neigh_modify every 5 delay 0 check yes
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fix 1 all nve/limit 0.2
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fix 2 all langevin 1.0 1.0 0.05 18273
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thermo_style multi
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thermo 500
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run 2000
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@ -0,0 +1,96 @@
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# Ionic surfactant system: S12S
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units lj
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dimension 3
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atom_style full
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|
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read_data data.gauss-diel
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|
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pair_style hybrid/overlay &
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lj/cut 3.5 &
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coul/long 18.0 &
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gauss/cut 3.4 &
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coul/diel 2.5
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pair_modify shift yes
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dielectric 0.4255
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kspace_style pppm/cg 0.0001
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kspace_modify mesh 12 12 12 order 3
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|
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bond_style harmonic
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angle_style harmonic
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dihedral_style opls
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pair_coeff 1 1 lj/cut 0.5 1.775 3.268 # HG HG
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pair_coeff 1 1 coul/long # HG HG
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pair_coeff 1 1 gauss/cut 0.1 2.549 0.1525
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pair_coeff 1 2 lj/cut 0.31623 1.5329 1.7206 # HG CM
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pair_coeff 1 3 lj/cut 0.31623 1.5329 1.7206 # HG CT
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pair_coeff 1 4 lj/cut 0.05 1.75 4.375 # HG CI
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pair_coeff 1 4 coul/long # HG CI
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pair_coeff 1 4 gauss/cut 0.2805 1.45 0.112
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pair_coeff 1 4 coul/diel 78. 1.375 0.112
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pair_coeff 2 2 lj/cut 0.2000 1.2910 3.2275 # CM CM
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pair_coeff 2 3 lj/cut 0.2000 1.2910 3.2275 # CM CT
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pair_coeff 2 4 lj/cut 0.4472 1.1455 1.28585 # CM CI
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pair_coeff 3 3 lj/cut 1.95 1.291 3.2275 # CT CT
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pair_coeff 3 4 lj/cut 0.4472 1.1455 1.28585 # CT CI
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pair_coeff 4 4 lj/cut 1.0 10. 1.12246 # CI CI
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pair_coeff 4 4 coul/long # CI CI
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bond_coeff 1 12650.0000 0.7500 # HG CM FROM TOP
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bond_coeff 2 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 3 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 4 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 5 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 6 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 7 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 8 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 9 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 10 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 11 12650.0000 0.5000 # CM CM FROM TOP
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bond_coeff 12 12650.0000 0.5000 # CM CT FROM TOP
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angle_coeff 1 85.7600 109.5000 # HG CM CM FROM TOP
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angle_coeff 2 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 3 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 4 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 5 85.7600 111.0000 # CM CM CM FROM TOP
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||||
angle_coeff 6 85.7600 111.0000 # CM CM CM FROM TOP
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||||
angle_coeff 7 85.7600 111.0000 # CM CM CM FROM TOP
|
||||
angle_coeff 8 85.7600 111.0000 # CM CM CM FROM TOP
|
||||
angle_coeff 9 85.7600 111.0000 # CM CM CM FROM TOP
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||||
angle_coeff 10 85.7600 111.0000 # CM CM CM FROM TOP
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angle_coeff 11 85.7600 111.0000 # CM CM CT FROM TOP
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||||
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dihedral_coeff 1 5.7431 -2.53241 5.0742 0.0 # HG CM CM CM FROM TOP
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dihedral_coeff 2 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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||||
dihedral_coeff 3 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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||||
dihedral_coeff 4 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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||||
dihedral_coeff 5 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 6 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
|
||||
dihedral_coeff 7 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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||||
dihedral_coeff 8 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 9 5.7431 -2.53241 5.0742 0.0 # CM CM CM CM FROM TOP
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dihedral_coeff 10 5.7431 -2.53241 5.0742 0.0 # CM CM CM CT FROM TOP
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timestep 0.002
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reset_timestep 0
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group cions type 4
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group sds subtract all cions
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velocity all create 1. 87287 dist gaussian
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neighbor 1.5 multi
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neigh_modify exclude molecule sds
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neigh_modify every 5 delay 0 check yes
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fix 1 all nve/limit 0.2
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fix 2 all langevin 1.0 1.0 0.05 18273
|
||||
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||||
thermo_style multi
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thermo 500
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run 2000
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@ -0,0 +1,75 @@
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LAMMPS (29 Nov 2011)
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1 = max bonds/atom
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1 = max angles/atom
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1 = max dihedrals/atom
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orthogonal box = (-35 -35 -35) to (35 35 35)
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||||
2 by 2 by 2 MPI processor grid
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4200 atoms
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3600 bonds
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3300 angles
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||||
3000 dihedrals
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2 = max # of 1-2 neighbors
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2 = max # of 1-3 neighbors
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||||
4 = max # of 1-4 neighbors
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6 = max # of special neighbors
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300 atoms in group cions
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3900 atoms in group sds
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PPPM initialization ...
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G vector = 0.25544
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grid = 30 30 30
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stencil order = 3
|
||||
RMS precision = 0.000403643
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||||
using single precision FFTs
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||||
brick FFT buffer size/proc = 5832 3600 1944
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||||
Memory usage per processor = 6.84746 Mbytes
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||||
---------------- Step 0 ----- CPU = 0.0000 (sec) ----------------
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||||
TotEng = 9.9401 KinEng = 1.4996 Temp = 1.0000
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||||
PotEng = 8.4405 E_bond = 0.0036 E_angle = 0.1237
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||||
E_dihed = 0.3185 E_impro = 0.0000 E_vdwl = 8.0100
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||||
E_coul = -0.0127 E_long = -0.0025 Press = 0.4086
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||||
---------------- Step 500 ----- CPU = 1.0851 (sec) ----------------
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||||
TotEng = 2.7534 KinEng = 1.4930 Temp = 0.9956
|
||||
PotEng = 1.2604 E_bond = 0.4577 E_angle = 0.3876
|
||||
E_dihed = 0.4193 E_impro = 0.0000 E_vdwl = -0.0025
|
||||
E_coul = 0.0004 E_long = -0.0021 Press = 0.0065
|
||||
---------------- Step 1000 ----- CPU = 2.1498 (sec) ----------------
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||||
TotEng = 2.7370 KinEng = 1.4592 Temp = 0.9731
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||||
PotEng = 1.2778 E_bond = 0.4499 E_angle = 0.3944
|
||||
E_dihed = 0.4387 E_impro = 0.0000 E_vdwl = -0.0032
|
||||
E_coul = 0.0004 E_long = -0.0023 Press = 0.0181
|
||||
---------------- Step 1500 ----- CPU = 3.2197 (sec) ----------------
|
||||
TotEng = 2.8177 KinEng = 1.4932 Temp = 0.9957
|
||||
PotEng = 1.3245 E_bond = 0.4712 E_angle = 0.3840
|
||||
E_dihed = 0.4761 E_impro = 0.0000 E_vdwl = -0.0048
|
||||
E_coul = 0.0002 E_long = -0.0024 Press = 0.0038
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||||
---------------- Step 2000 ----- CPU = 4.2883 (sec) ----------------
|
||||
TotEng = 2.8437 KinEng = 1.5229 Temp = 1.0155
|
||||
PotEng = 1.3208 E_bond = 0.4463 E_angle = 0.3939
|
||||
E_dihed = 0.4881 E_impro = 0.0000 E_vdwl = -0.0051
|
||||
E_coul = 0.0002 E_long = -0.0027 Press = -0.0019
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||||
Loop time of 4.28834 on 8 procs for 2000 steps with 4200 atoms
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||||
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||||
Pair time (%) = 0.0716868 (1.67167)
|
||||
Bond time (%) = 0.527554 (12.302)
|
||||
Kspace time (%) = 3.19648 (74.5388)
|
||||
Neigh time (%) = 0.0167304 (0.390136)
|
||||
Comm time (%) = 0.359536 (8.38402)
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||||
Output time (%) = 0.000303894 (0.00708652)
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||||
Modify time (%) = 0.0936236 (2.18321)
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Other time (%) = 0.022429 (0.523024)
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||||
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||||
FFT time (% of Kspce) = 2.18 (68.2001)
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||||
FFT Gflps 3d (1d only) = 5.05498 7.6769
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||||
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||||
Nlocal: 525 ave 625 max 428 min
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||||
Histogram: 1 1 0 2 0 1 1 1 0 1
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||||
Nghost: 1405.5 ave 1627 max 1279 min
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||||
Histogram: 2 0 1 3 1 0 0 0 0 1
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||||
Neighs: 1338.88 ave 1773 max 916 min
|
||||
Histogram: 1 1 1 1 0 0 1 1 1 1
|
||||
|
||||
Total # of neighbors = 10711
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||||
Ave neighs/atom = 2.55024
|
||||
Ave special neighs/atom = 4.71429
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||||
Neighbor list builds = 14
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||||
Dangerous builds = 2
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@ -0,0 +1,78 @@
|
|||
LAMMPS (29 Nov 2011)
|
||||
1 = max bonds/atom
|
||||
1 = max angles/atom
|
||||
1 = max dihedrals/atom
|
||||
orthogonal box = (-35 -35 -35) to (35 35 35)
|
||||
2 by 2 by 2 MPI processor grid
|
||||
4200 atoms
|
||||
3600 bonds
|
||||
3300 angles
|
||||
3000 dihedrals
|
||||
2 = max # of 1-2 neighbors
|
||||
2 = max # of 1-3 neighbors
|
||||
4 = max # of 1-4 neighbors
|
||||
6 = max # of special neighbors
|
||||
300 atoms in group cions
|
||||
3900 atoms in group sds
|
||||
PPPM initialization ...
|
||||
G vector = 0.109922
|
||||
grid = 12 12 12
|
||||
stencil order = 3
|
||||
RMS precision = 0.000349313
|
||||
using single precision FFTs
|
||||
brick FFT buffer size/proc = 729 288 486
|
||||
PPPM/cg optimization cutoff: 1e-05
|
||||
Total charged atoms: 14.3%
|
||||
Min/max charged atoms/proc: 11.3% 16.9%
|
||||
Memory usage per processor = 8.09396 Mbytes
|
||||
---------------- Step 0 ----- CPU = 0.0000 (sec) ----------------
|
||||
TotEng = 9.9401 KinEng = 1.4996 Temp = 1.0000
|
||||
PotEng = 8.4405 E_bond = 0.0036 E_angle = 0.1237
|
||||
E_dihed = 0.3185 E_impro = 0.0000 E_vdwl = 8.0100
|
||||
E_coul = -0.0116 E_long = -0.0036 Press = 0.4086
|
||||
---------------- Step 500 ----- CPU = 0.4412 (sec) ----------------
|
||||
TotEng = 2.7881 KinEng = 1.5273 Temp = 1.0184
|
||||
PotEng = 1.2608 E_bond = 0.4529 E_angle = 0.3844
|
||||
E_dihed = 0.4277 E_impro = 0.0000 E_vdwl = -0.0022
|
||||
E_coul = 0.0016 E_long = -0.0035 Press = -0.0027
|
||||
---------------- Step 1000 ----- CPU = 0.8284 (sec) ----------------
|
||||
TotEng = 2.7685 KinEng = 1.4797 Temp = 0.9867
|
||||
PotEng = 1.2888 E_bond = 0.4669 E_angle = 0.3879
|
||||
E_dihed = 0.4388 E_impro = 0.0000 E_vdwl = -0.0020
|
||||
E_coul = 0.0011 E_long = -0.0038 Press = -0.0003
|
||||
---------------- Step 1500 ----- CPU = 1.2143 (sec) ----------------
|
||||
TotEng = 2.8092 KinEng = 1.5019 Temp = 1.0015
|
||||
PotEng = 1.3073 E_bond = 0.4716 E_angle = 0.3748
|
||||
E_dihed = 0.4673 E_impro = 0.0000 E_vdwl = -0.0034
|
||||
E_coul = 0.0010 E_long = -0.0039 Press = -0.0056
|
||||
---------------- Step 2000 ----- CPU = 1.7053 (sec) ----------------
|
||||
TotEng = 2.8481 KinEng = 1.5096 Temp = 1.0066
|
||||
PotEng = 1.3386 E_bond = 0.4741 E_angle = 0.3764
|
||||
E_dihed = 0.4952 E_impro = 0.0000 E_vdwl = -0.0037
|
||||
E_coul = 0.0005 E_long = -0.0040 Press = 0.0018
|
||||
Loop time of 1.70533 on 8 procs for 2000 steps with 4200 atoms
|
||||
|
||||
Pair time (%) = 0.203692 (11.9444)
|
||||
Bond time (%) = 0.484542 (28.4133)
|
||||
Kspace time (%) = 0.45694 (26.7948)
|
||||
Neigh time (%) = 0.045952 (2.6946)
|
||||
Comm time (%) = 0.402121 (23.5802)
|
||||
Output time (%) = 0.000266433 (0.0156235)
|
||||
Modify time (%) = 0.0844524 (4.95225)
|
||||
Other time (%) = 0.0273688 (1.60489)
|
||||
|
||||
FFT time (% of Kspce) = 0.153959 (33.6934)
|
||||
FFT Gflps 3d (1d only) = 3.34681 9.67846
|
||||
|
||||
Nlocal: 525 ave 625 max 427 min
|
||||
Histogram: 1 1 0 2 0 1 0 2 0 1
|
||||
Nghost: 4466 ave 4640 max 4345 min
|
||||
Histogram: 2 1 0 0 1 2 1 0 0 1
|
||||
Neighs: 3141.38 ave 3956 max 2489 min
|
||||
Histogram: 1 2 1 1 0 0 0 1 0 2
|
||||
|
||||
Total # of neighbors = 25131
|
||||
Ave neighs/atom = 5.98357
|
||||
Ave special neighs/atom = 4.71429
|
||||
Neighbor list builds = 14
|
||||
Dangerous builds = 2
|
|
@ -0,0 +1,78 @@
|
|||
LAMMPS (29 Nov 2011)
|
||||
1 = max bonds/atom
|
||||
1 = max angles/atom
|
||||
1 = max dihedrals/atom
|
||||
orthogonal box = (-35 -35 -35) to (35 35 35)
|
||||
2 by 2 by 2 MPI processor grid
|
||||
4200 atoms
|
||||
3600 bonds
|
||||
3300 angles
|
||||
3000 dihedrals
|
||||
2 = max # of 1-2 neighbors
|
||||
2 = max # of 1-3 neighbors
|
||||
4 = max # of 1-4 neighbors
|
||||
6 = max # of special neighbors
|
||||
300 atoms in group cions
|
||||
3900 atoms in group sds
|
||||
PPPM initialization ...
|
||||
G vector = 0.109922
|
||||
grid = 12 12 12
|
||||
stencil order = 3
|
||||
RMS precision = 0.000349313
|
||||
using single precision FFTs
|
||||
brick FFT buffer size/proc = 729 288 486
|
||||
PPPM/cg optimization cutoff: 1e-05
|
||||
Total charged atoms: 14.3%
|
||||
Min/max charged atoms/proc: 11.3% 16.9%
|
||||
Memory usage per processor = 7.70368 Mbytes
|
||||
---------------- Step 0 ----- CPU = 0.0000 (sec) ----------------
|
||||
TotEng = 9.9401 KinEng = 1.4996 Temp = 1.0000
|
||||
PotEng = 8.4405 E_bond = 0.0036 E_angle = 0.1237
|
||||
E_dihed = 0.3185 E_impro = 0.0000 E_vdwl = 8.0100
|
||||
E_coul = -0.0116 E_long = -0.0036 Press = 0.4086
|
||||
---------------- Step 500 ----- CPU = 0.4192 (sec) ----------------
|
||||
TotEng = 2.7881 KinEng = 1.5273 Temp = 1.0184
|
||||
PotEng = 1.2608 E_bond = 0.4529 E_angle = 0.3844
|
||||
E_dihed = 0.4277 E_impro = 0.0000 E_vdwl = -0.0022
|
||||
E_coul = 0.0016 E_long = -0.0035 Press = -0.0027
|
||||
---------------- Step 1000 ----- CPU = 0.8205 (sec) ----------------
|
||||
TotEng = 2.7685 KinEng = 1.4797 Temp = 0.9867
|
||||
PotEng = 1.2888 E_bond = 0.4669 E_angle = 0.3879
|
||||
E_dihed = 0.4388 E_impro = 0.0000 E_vdwl = -0.0020
|
||||
E_coul = 0.0011 E_long = -0.0038 Press = -0.0003
|
||||
---------------- Step 1500 ----- CPU = 1.2196 (sec) ----------------
|
||||
TotEng = 2.8092 KinEng = 1.5019 Temp = 1.0015
|
||||
PotEng = 1.3073 E_bond = 0.4716 E_angle = 0.3748
|
||||
E_dihed = 0.4673 E_impro = 0.0000 E_vdwl = -0.0034
|
||||
E_coul = 0.0010 E_long = -0.0039 Press = -0.0056
|
||||
---------------- Step 2000 ----- CPU = 1.6195 (sec) ----------------
|
||||
TotEng = 2.8481 KinEng = 1.5096 Temp = 1.0066
|
||||
PotEng = 1.3386 E_bond = 0.4741 E_angle = 0.3764
|
||||
E_dihed = 0.4952 E_impro = 0.0000 E_vdwl = -0.0037
|
||||
E_coul = 0.0005 E_long = -0.0040 Press = 0.0018
|
||||
Loop time of 1.61955 on 8 procs for 2000 steps with 4200 atoms
|
||||
|
||||
Pair time (%) = 0.224105 (13.8375)
|
||||
Bond time (%) = 0.474754 (29.314)
|
||||
Kspace time (%) = 0.386537 (23.867)
|
||||
Neigh time (%) = 0.042553 (2.62747)
|
||||
Comm time (%) = 0.380482 (23.4931)
|
||||
Output time (%) = 0.00026536 (0.0163848)
|
||||
Modify time (%) = 0.0842355 (5.20117)
|
||||
Other time (%) = 0.0266142 (1.64331)
|
||||
|
||||
FFT time (% of Kspce) = 0.115633 (29.9151)
|
||||
FFT Gflps 3d (1d only) = 4.45608 14.0703
|
||||
|
||||
Nlocal: 525 ave 625 max 427 min
|
||||
Histogram: 1 1 0 2 0 1 0 2 0 1
|
||||
Nghost: 4466 ave 4640 max 4345 min
|
||||
Histogram: 2 1 0 0 1 2 1 0 0 1
|
||||
Neighs: 3141.38 ave 3956 max 2489 min
|
||||
Histogram: 1 2 1 1 0 0 0 1 0 2
|
||||
|
||||
Total # of neighbors = 25131
|
||||
Ave neighs/atom = 5.98357
|
||||
Ave special neighs/atom = 4.71429
|
||||
Neighbor list builds = 14
|
||||
Dangerous builds = 2
|
Loading…
Reference in New Issue