diff --git a/doc/CMakeCache.txt b/doc/CMakeCache.txt
deleted file mode 100644
index 4a77cf906e..0000000000
--- a/doc/CMakeCache.txt
+++ /dev/null
@@ -1,1207 +0,0 @@
-# This is the CMakeCache file.
-# For build in directory: /Users/ngoccuongnguyen/lammps/doc
-# It was generated by CMake: /usr/local/Cellar/cmake/3.18.2/bin/cmake
-# You can edit this file to change values found and used by cmake.
-# If you do not want to change any of the values, simply exit the editor.
-# If you do want to change a value, simply edit, save, and exit the editor.
-# The syntax for the file is as follows:
-# KEY:TYPE=VALUE
-# KEY is the name of a variable in the cache.
-# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
-# VALUE is the current value for the KEY.
-
-########################
-# EXTERNAL cache entries
-########################
-
-//Path to a library.
-BLAS_Accelerate_LIBRARY:FILEPATH=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.1.sdk/System/Library/Frameworks/Accelerate.framework
-
-//Path to a library.
-BLAS_acml_LIBRARY:FILEPATH=BLAS_acml_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_acml_mp_LIBRARY:FILEPATH=BLAS_acml_mp_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_armpl_lp64_LIBRARY:FILEPATH=BLAS_armpl_lp64_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_blas_LIBRARY:FILEPATH=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.1.sdk/usr/lib/libblas.tbd
-
-//Path to a library.
-BLAS_blis_LIBRARY:FILEPATH=BLAS_blis_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_complib.sgimath_LIBRARY:FILEPATH=BLAS_complib.sgimath_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_cxml_LIBRARY:FILEPATH=BLAS_cxml_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_dxml_LIBRARY:FILEPATH=BLAS_dxml_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_essl_LIBRARY:FILEPATH=BLAS_essl_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_f77blas_LIBRARY:FILEPATH=BLAS_f77blas_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_goto2_LIBRARY:FILEPATH=BLAS_goto2_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_mkl_LIBRARY:FILEPATH=BLAS_mkl_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_mkl_em64t_LIBRARY:FILEPATH=BLAS_mkl_em64t_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_mkl_ia32_LIBRARY:FILEPATH=BLAS_mkl_ia32_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_mkl_intel_LIBRARY:FILEPATH=BLAS_mkl_intel_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_mkl_intel_lp64_LIBRARY:FILEPATH=BLAS_mkl_intel_lp64_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_mkl_rt_LIBRARY:FILEPATH=BLAS_mkl_rt_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_openblas_LIBRARY:FILEPATH=BLAS_openblas_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_scsl_LIBRARY:FILEPATH=BLAS_scsl_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_sgemm_LIBRARY:FILEPATH=BLAS_sgemm_LIBRARY-NOTFOUND
-
-//Path to a library.
-BLAS_sunperf_LIBRARY:FILEPATH=BLAS_sunperf_LIBRARY-NOTFOUND
-
-//Build LAMMPS HTML documentation
-BUILD_DOC:BOOL=OFF
-
-//Build and install the LAMMPS shell
-BUILD_LAMMPS_SHELL:BOOL=OFF
-
-//Build MPI version
-BUILD_MPI:BOOL=ON
-
-//Build with OpenMP support
-BUILD_OMP:BOOL=OFF
-
-//Build shared library
-BUILD_SHARED_LIBS:BOOL=on
-
-//Build and install LAMMPS tools (msi2lmp, binary2txt, chain)
-BUILD_TOOLS:BOOL=OFF
-
-//Path to a program.
-CMAKE_ADDR2LINE:FILEPATH=CMAKE_ADDR2LINE-NOTFOUND
-
-//Path to a program.
-CMAKE_AR:FILEPATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ar
-
-//Choose the type of build, options are: None Debug Release RelWithDebInfo
-// MinSizeRel.
-CMAKE_BUILD_TYPE:STRING=RelWithDebInfo
-
-//Enable/Disable color output during build.
-CMAKE_COLOR_MAKEFILE:BOOL=ON
-
-//CXX compiler
-CMAKE_CXX_COMPILER:FILEPATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
-
-//Use compiler extensions
-CMAKE_CXX_EXTENSIONS:BOOL=OFF
-
-//Flags used by the CXX compiler during all build types.
-CMAKE_CXX_FLAGS:STRING=
-
-//Flags used by the CXX compiler during DEBUG builds.
-CMAKE_CXX_FLAGS_DEBUG:STRING=-g
-
-//Flags used by the CXX compiler during MINSIZEREL builds.
-CMAKE_CXX_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG
-
-//Flags used by the CXX compiler during RELEASE builds.
-CMAKE_CXX_FLAGS_RELEASE:STRING=-O3 -DNDEBUG
-
-//Flags used by the CXX compiler during RELWITHDEBINFO builds.
-CMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-O2 -g -DNDEBUG
-
-//C compiler
-CMAKE_C_COMPILER:FILEPATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
-
-//Flags used by the C compiler during all build types.
-CMAKE_C_FLAGS:STRING=
-
-//Flags used by the C compiler during DEBUG builds.
-CMAKE_C_FLAGS_DEBUG:STRING=-g
-
-//Flags used by the C compiler during MINSIZEREL builds.
-CMAKE_C_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG
-
-//Flags used by the C compiler during RELEASE builds.
-CMAKE_C_FLAGS_RELEASE:STRING=-O3 -DNDEBUG
-
-//Flags used by the C compiler during RELWITHDEBINFO builds.
-CMAKE_C_FLAGS_RELWITHDEBINFO:STRING=-O2 -g -DNDEBUG
-
-//Path to a program.
-CMAKE_DLLTOOL:FILEPATH=CMAKE_DLLTOOL-NOTFOUND
-
-//Executable file format
-CMAKE_EXECUTABLE_FORMAT:STRING=MACHO
-
-//Flags used by the linker during all build types.
-CMAKE_EXE_LINKER_FLAGS:STRING=
-
-//Flags used by the linker during DEBUG builds.
-CMAKE_EXE_LINKER_FLAGS_DEBUG:STRING=
-
-//Flags used by the linker during MINSIZEREL builds.
-CMAKE_EXE_LINKER_FLAGS_MINSIZEREL:STRING=
-
-//Flags used by the linker during RELEASE builds.
-CMAKE_EXE_LINKER_FLAGS_RELEASE:STRING=
-
-//Flags used by the linker during RELWITHDEBINFO builds.
-CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
-
-//Enable/Disable output of compile commands during generation.
-CMAKE_EXPORT_COMPILE_COMMANDS:BOOL=
-
-//User executables (bin)
-CMAKE_INSTALL_BINDIR:PATH=bin
-
-//Read-only architecture-independent data (DATAROOTDIR)
-CMAKE_INSTALL_DATADIR:PATH=
-
-//Read-only architecture-independent data root (share)
-CMAKE_INSTALL_DATAROOTDIR:PATH=share
-
-//Documentation root (DATAROOTDIR/doc/PROJECT_NAME)
-CMAKE_INSTALL_DOCDIR:PATH=
-
-//C header files (include)
-CMAKE_INSTALL_INCLUDEDIR:PATH=include
-
-//Info documentation (DATAROOTDIR/info)
-CMAKE_INSTALL_INFODIR:PATH=
-
-//Object code libraries (lib)
-CMAKE_INSTALL_LIBDIR:PATH=lib
-
-//Program executables (libexec)
-CMAKE_INSTALL_LIBEXECDIR:PATH=libexec
-
-//Locale-dependent data (DATAROOTDIR/locale)
-CMAKE_INSTALL_LOCALEDIR:PATH=
-
-//Modifiable single-machine data (var)
-CMAKE_INSTALL_LOCALSTATEDIR:PATH=var
-
-//Man documentation (DATAROOTDIR/man)
-CMAKE_INSTALL_MANDIR:PATH=
-
-//Path to a program.
-CMAKE_INSTALL_NAME_TOOL:FILEPATH=/opt/local/bin/install_name_tool
-
-//C header files for non-gcc (/usr/include)
-CMAKE_INSTALL_OLDINCLUDEDIR:PATH=/usr/include
-
-//Default install path
-CMAKE_INSTALL_PREFIX:PATH=/Users/ngoccuongnguyen/.local
-
-//Run-time variable data (LOCALSTATEDIR/run)
-CMAKE_INSTALL_RUNSTATEDIR:PATH=
-
-//System admin executables (sbin)
-CMAKE_INSTALL_SBINDIR:PATH=sbin
-
-//Modifiable architecture-independent data (com)
-CMAKE_INSTALL_SHAREDSTATEDIR:PATH=com
-
-//Read-only single-machine data (etc)
-CMAKE_INSTALL_SYSCONFDIR:PATH=etc
-
-//Path to a program.
-CMAKE_LINKER:FILEPATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
-
-//Path to a program.
-CMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/make
-
-//Flags used by the linker during the creation of modules during
-// all build types.
-CMAKE_MODULE_LINKER_FLAGS:STRING=
-
-//Flags used by the linker during the creation of modules during
-// DEBUG builds.
-CMAKE_MODULE_LINKER_FLAGS_DEBUG:STRING=
-
-//Flags used by the linker during the creation of modules during
-// MINSIZEREL builds.
-CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL:STRING=
-
-//Flags used by the linker during the creation of modules during
-// RELEASE builds.
-CMAKE_MODULE_LINKER_FLAGS_RELEASE:STRING=
-
-//Flags used by the linker during the creation of modules during
-// RELWITHDEBINFO builds.
-CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
-
-//Path to a program.
-CMAKE_NM:FILEPATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/nm
-
-//Path to a program.
-CMAKE_OBJCOPY:FILEPATH=CMAKE_OBJCOPY-NOTFOUND
-
-//Path to a program.
-CMAKE_OBJDUMP:FILEPATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/objdump
-
-//Build architectures for OSX
-CMAKE_OSX_ARCHITECTURES:STRING=
-
-//Minimum OS X version to target for deployment (at runtime); newer
-// APIs weak linked. Set to empty string for default value.
-CMAKE_OSX_DEPLOYMENT_TARGET:STRING=10.15
-
-//The product will be built against the headers and libraries located
-// inside the indicated SDK.
-CMAKE_OSX_SYSROOT:PATH=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.1.sdk
-
-//Create object compatible with shared libraries
-CMAKE_POSITION_INDEPENDENT_CODE:BOOL=ON
-
-//Value Computed by CMake
-CMAKE_PROJECT_DESCRIPTION:STATIC=
-
-//Value Computed by CMake
-CMAKE_PROJECT_HOMEPAGE_URL:STATIC=
-
-//Value Computed by CMake
-CMAKE_PROJECT_NAME:STATIC=lammps
-
-//Path to a program.
-CMAKE_RANLIB:FILEPATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib
-
-//Path to a program.
-CMAKE_READELF:FILEPATH=CMAKE_READELF-NOTFOUND
-
-//Flags used by the linker during the creation of shared libraries
-// during all build types.
-CMAKE_SHARED_LINKER_FLAGS:STRING=
-
-//Flags used by the linker during the creation of shared libraries
-// during DEBUG builds.
-CMAKE_SHARED_LINKER_FLAGS_DEBUG:STRING=
-
-//Flags used by the linker during the creation of shared libraries
-// during MINSIZEREL builds.
-CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL:STRING=
-
-//Flags used by the linker during the creation of shared libraries
-// during RELEASE builds.
-CMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING=
-
-//Flags used by the linker during the creation of shared libraries
-// during RELWITHDEBINFO builds.
-CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO:STRING=
-
-//If set, runtime paths are not added when installing shared libraries,
-// but are added when building.
-CMAKE_SKIP_INSTALL_RPATH:BOOL=NO
-
-//If set, runtime paths are not added when using shared libraries.
-CMAKE_SKIP_RPATH:BOOL=NO
-
-//Flags used by the linker during the creation of static libraries
-// during all build types.
-CMAKE_STATIC_LINKER_FLAGS:STRING=
-
-//Flags used by the linker during the creation of static libraries
-// during DEBUG builds.
-CMAKE_STATIC_LINKER_FLAGS_DEBUG:STRING=
-
-//Flags used by the linker during the creation of static libraries
-// during MINSIZEREL builds.
-CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL:STRING=
-
-//Flags used by the linker during the creation of static libraries
-// during RELEASE builds.
-CMAKE_STATIC_LINKER_FLAGS_RELEASE:STRING=
-
-//Flags used by the linker during the creation of static libraries
-// during RELWITHDEBINFO builds.
-CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO:STRING=
-
-//Path to a program.
-CMAKE_STRIP:FILEPATH=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/strip
-
-//Compiler and machine specific optimization flags (compilation
-// only)
-CMAKE_TUNE_FLAGS:STRING=
-
-//Generate verbose Makefiles
-CMAKE_VERBOSE_MAKEFILE:BOOL=FALSE
-
-//clang-format executable
-ClangFormat_EXECUTABLE:FILEPATH=ClangFormat_EXECUTABLE-NOTFOUND
-
-//Include clang-tidy processing when compiling
-ENABLE_CLANG_TIDY:BOOL=OFF
-
-//Add 'iwyu' build target to call the include-what-you-use tool
-ENABLE_IWYU:BOOL=OFF
-
-//Select a code sanitizer option (none (default), address, leak,
-// thread, undefined)
-ENABLE_SANITIZER:STRING=none
-
-//Enable testing
-ENABLE_TESTING:BOOL=OFF
-
-//Path to a program.
-FFMPEG_EXECUTABLE:FILEPATH=FFMPEG_EXECUTABLE-NOTFOUND
-
-//FFT library for KSPACE package
-FFT:STRING=FFTW3
-
-//Path to a file.
-FFTW3_INCLUDE_DIR:PATH=/usr/local/include
-
-//Path to a library.
-FFTW3_LIBRARY:FILEPATH=/usr/local/lib/libfftw3.dylib
-
-//Path to a library.
-FFTW3_OMP_LIBRARY:FILEPATH=/usr/local/lib/libfftw3_omp.dylib
-
-//Use threaded FFTW library
-FFT_FFTW_THREADS:BOOL=ON
-
-//Optimization for FFT
-FFT_PACK:STRING=array
-
-//Use single precision FFTs instead of double precision FFTs
-FFT_SINGLE:BOOL=OFF
-
-//Git command line client
-GIT_EXECUTABLE:FILEPATH=/usr/bin/git
-
-//Path to a program.
-GZIP_EXECUTABLE:FILEPATH=/usr/bin/gzip
-
-//Path to a file.
-JPEG_INCLUDE_DIR:PATH=/usr/local/include
-
-//Path to a library.
-JPEG_LIBRARY_DEBUG:FILEPATH=JPEG_LIBRARY_DEBUG-NOTFOUND
-
-//Path to a library.
-JPEG_LIBRARY_RELEASE:FILEPATH=/usr/local/lib/libjpeg.dylib
-
-//Base URL for LAMMPS downloads
-LAMMPS_DOWNLOADS_URL:STRING=https://download.lammps.org
-
-//enable the use of C++ exceptions for error messages (useful for
-// library interface)
-LAMMPS_EXCEPTIONS:BOOL=on
-
-//Set runtime path for shared libraries linked to LAMMPS binaries
-LAMMPS_INSTALL_RPATH:BOOL=OFF
-
-//Workaround if your system or MPI version does not recognize 'long
-// long' data types
-LAMMPS_LONGLONG_TO_LONG:BOOL=OFF
-
-//Suffix to append to lmp binary (WON'T enable any features automatically
-LAMMPS_MACHINE:STRING=
-
-//enables the use of the posix_memalign() call instead of malloc()
-// when large chunks or memory are allocated by LAMMPS. Set to
-// 0 to disable
-LAMMPS_MEMALIGN:STRING=64
-
-//LAMMPS integer sizes (smallsmall: all 32-bit, smallbig: 64-bit
-// #atoms #timesteps, bigbig: also 64-bit imageint, 64-bit atom
-// ids)
-LAMMPS_SIZES:STRING=smallbig
-
-//Executable for running MPI programs.
-MPIEXEC_EXECUTABLE:FILEPATH=/usr/local/bin/mpiexec
-
-//Maximum number of processors available to run MPI applications.
-MPIEXEC_MAX_NUMPROCS:STRING=4
-
-//Flag used by MPI to specify the number of processes for mpiexec;
-// the next option will be the number of processes.
-MPIEXEC_NUMPROC_FLAG:STRING=-n
-
-//These flags will be placed after all flags passed to mpiexec.
-MPIEXEC_POSTFLAGS:STRING=
-
-//These flags will be directly before the executable that is being
-// run by mpiexec.
-MPIEXEC_PREFLAGS:STRING=
-
-//MPI CXX additional include directories
-MPI_CXX_ADDITIONAL_INCLUDE_DIRS:STRING=
-
-//MPI compiler for CXX
-MPI_CXX_COMPILER:FILEPATH=/usr/local/bin/mpicxx
-
-//MPI CXX compiler wrapper include directories
-MPI_CXX_COMPILER_INCLUDE_DIRS:STRING=/usr/local/Cellar/open-mpi/4.1.1_2/include
-
-//MPI CXX compilation definitions
-MPI_CXX_COMPILE_DEFINITIONS:STRING=MPICH_SKIP_MPICXX;OMPI_SKIP_MPICXX;_MPICC_H
-
-//MPI CXX compilation options
-MPI_CXX_COMPILE_OPTIONS:STRING=
-
-//Path to a file.
-MPI_CXX_HEADER_DIR:PATH=/usr/local/Cellar/open-mpi/4.1.1_2/include
-
-//MPI CXX libraries to link against
-MPI_CXX_LIB_NAMES:STRING=mpi
-
-//MPI CXX linker flags
-MPI_CXX_LINK_FLAGS:STRING=-L/usr/local/Cellar/libevent/2.1.12/lib
-
-//If true, the MPI-2 C++ bindings are disabled using definitions.
-MPI_CXX_SKIP_MPICXX:BOOL=FALSE
-
-//Location of the mpi library for MPI
-MPI_mpi_LIBRARY:FILEPATH=/usr/local/Cellar/open-mpi/4.1.1_2/lib/libmpi.dylib
-
-//CXX compiler flags for OpenMP parallelization
-OpenMP_CXX_FLAGS:STRING=-Xclang -fopenmp
-
-//Path to a file.
-OpenMP_CXX_INCLUDE_DIR:PATH=/usr/local/include
-
-//CXX compiler libraries for OpenMP parallelization
-OpenMP_CXX_LIB_NAMES:STRING=libomp
-
-//Path to a library.
-OpenMP_libomp_LIBRARY:FILEPATH=/usr/local/lib/libomp.dylib
-
-//Build ADIOS Package
-PKG_ADIOS:BOOL=OFF
-
-//Build ASPHERE Package
-PKG_ASPHERE:BOOL=OFF
-
-//Build ATC Package
-PKG_ATC:BOOL=OFF
-
-//Build AWPMD Package
-PKG_AWPMD:BOOL=OFF
-
-//Build BOCS Package
-PKG_BOCS:BOOL=OFF
-
-//Build BODY Package
-PKG_BODY:BOOL=OFF
-
-//Build BPM Package
-PKG_BPM:BOOL=OFF
-
-//Build BROWNIAN Package
-PKG_BROWNIAN:BOOL=OFF
-
-//Build CG-DNA Package
-PKG_CG-DNA:BOOL=OFF
-
-//Build CG-SDK Package
-PKG_CG-SDK:BOOL=OFF
-
-//Build CLASS2 Package
-PKG_CLASS2:BOOL=OFF
-
-//Build COLLOID Package
-PKG_COLLOID:BOOL=OFF
-
-//Build COLVARS Package
-PKG_COLVARS:BOOL=OFF
-
-//Build COMPRESS Package
-PKG_COMPRESS:BOOL=OFF
-
-//pkg-config executable
-PKG_CONFIG_EXECUTABLE:FILEPATH=/opt/local/bin/pkg-config
-
-//Build CORESHELL Package
-PKG_CORESHELL:BOOL=OFF
-
-//Build DIELECTRIC Package
-PKG_DIELECTRIC:BOOL=OFF
-
-//Build DIFFRACTION Package
-PKG_DIFFRACTION:BOOL=OFF
-
-//Build DIPOLE Package
-PKG_DIPOLE:BOOL=OFF
-
-//Build DPD-BASIC Package
-PKG_DPD-BASIC:BOOL=OFF
-
-//Build DPD-MESO Package
-PKG_DPD-MESO:BOOL=OFF
-
-//Build DPD-REACT Package
-PKG_DPD-REACT:BOOL=OFF
-
-//Build DPD-SMOOTH Package
-PKG_DPD-SMOOTH:BOOL=OFF
-
-//Build DRUDE Package
-PKG_DRUDE:BOOL=OFF
-
-//Build EFF Package
-PKG_EFF:BOOL=OFF
-
-//Build ELECTRODE Package
-PKG_ELECTRODE:BOOL=OFF
-
-//Build EXTRA-COMPUTE Package
-PKG_EXTRA-COMPUTE:BOOL=OFF
-
-//Build EXTRA-DUMP Package
-PKG_EXTRA-DUMP:BOOL=OFF
-
-//Build EXTRA-FIX Package
-PKG_EXTRA-FIX:BOOL=OFF
-
-//Build EXTRA-MOLECULE Package
-PKG_EXTRA-MOLECULE:BOOL=OFF
-
-//Build EXTRA-PAIR Package
-PKG_EXTRA-PAIR:BOOL=OFF
-
-//Build FEP Package
-PKG_FEP:BOOL=OFF
-
-//Build GPU Package
-PKG_GPU:BOOL=OFF
-
-//Build GRANULAR Package
-PKG_GRANULAR:BOOL=OFF
-
-//Build H5MD Package
-PKG_H5MD:BOOL=OFF
-
-//Build INTEL Package
-PKG_INTEL:BOOL=OFF
-
-//Build INTERLAYER Package
-PKG_INTERLAYER:BOOL=OFF
-
-//Build KIM Package
-PKG_KIM:BOOL=OFF
-
-//Build KOKKOS Package
-PKG_KOKKOS:BOOL=OFF
-
-//Build KSPACE Package
-PKG_KSPACE:BOOL=ON
-
-//Build LATBOLTZ Package
-PKG_LATBOLTZ:BOOL=OFF
-
-//Build LATTE Package
-PKG_LATTE:BOOL=OFF
-
-//Build MACHDYN Package
-PKG_MACHDYN:BOOL=OFF
-
-//Build MANIFOLD Package
-PKG_MANIFOLD:BOOL=OFF
-
-//Build MANYBODY Package
-PKG_MANYBODY:BOOL=ON
-
-//Build MC Package
-PKG_MC:BOOL=OFF
-
-//Build MDI Package
-PKG_MDI:BOOL=OFF
-
-//Build MEAM Package
-PKG_MEAM:BOOL=OFF
-
-//Build MESONT Package
-PKG_MESONT:BOOL=OFF
-
-//Build MGPT Package
-PKG_MGPT:BOOL=OFF
-
-//Build MISC Package
-PKG_MISC:BOOL=OFF
-
-//Build ML-HDNNP Package
-PKG_ML-HDNNP:BOOL=OFF
-
-//Build ML-IAP Package
-PKG_ML-IAP:BOOL=OFF
-
-//Build ML-PACE Package
-PKG_ML-PACE:BOOL=off
-
-//Build ML-POD Package
-PKG_ML-POD:BOOL=on
-
-//Build ML-QUIP Package
-PKG_ML-QUIP:BOOL=OFF
-
-//Build ML-RANN Package
-PKG_ML-RANN:BOOL=OFF
-
-//Build ML-SNAP Package
-PKG_ML-SNAP:BOOL=on
-
-//Build MOFFF Package
-PKG_MOFFF:BOOL=OFF
-
-//Build MOLECULE Package
-PKG_MOLECULE:BOOL=ON
-
-//Build MOLFILE Package
-PKG_MOLFILE:BOOL=OFF
-
-//Build MPIIO Package
-PKG_MPIIO:BOOL=OFF
-
-//Build MSCG Package
-PKG_MSCG:BOOL=OFF
-
-//Build NETCDF Package
-PKG_NETCDF:BOOL=OFF
-
-//Build OPENMP Package
-PKG_OPENMP:BOOL=OFF
-
-//Build OPT Package
-PKG_OPT:BOOL=OFF
-
-//Build ORIENT Package
-PKG_ORIENT:BOOL=OFF
-
-//Build PERI Package
-PKG_PERI:BOOL=OFF
-
-//Build PHONON Package
-PKG_PHONON:BOOL=OFF
-
-//Build PLUGIN Package
-PKG_PLUGIN:BOOL=OFF
-
-//Build PLUMED Package
-PKG_PLUMED:BOOL=OFF
-
-//Build POEMS Package
-PKG_POEMS:BOOL=OFF
-
-//Build PTM Package
-PKG_PTM:BOOL=OFF
-
-//Build PYTHON Package
-PKG_PYTHON:BOOL=on
-
-//Build QEQ Package
-PKG_QEQ:BOOL=OFF
-
-//Build QMMM Package
-PKG_QMMM:BOOL=OFF
-
-//Build QTB Package
-PKG_QTB:BOOL=OFF
-
-//Build REACTION Package
-PKG_REACTION:BOOL=OFF
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-  /* SDCC = VRP */
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-
-/* These compilers are either not known or too old to define an
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-#else /* unknown compiler */
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-
-/* Construct the string literal in pieces to prevent the source from
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-   because some compilers will just produce instructions to fill the
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-#ifdef __QNXNTO__
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-#define STRINGIFY_HELPER(X) #X
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-/* Identify known platforms by name.  */
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-#elif defined(__CYGWIN__)
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-#elif defined(__MINGW32__)
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-#elif defined(__APPLE__)
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-#elif defined(_WIN32) || defined(__WIN32__) || defined(WIN32)
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-#elif defined(__FreeBSD__) || defined(__FreeBSD)
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-#elif defined(__WATCOMC__)
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-# elif defined(__DOS__)
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-# elif defined(__OS2__)
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-# elif defined(__WINDOWS__)
-#  define PLATFORM_ID "Windows3x"
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-# elif defined(__VXWORKS__)
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-# else /* unknown platform */
-#  define PLATFORM_ID
-# endif
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-#elif defined(__INTEGRITY)
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-# else /* regular Integrity */
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-
-#else /* unknown platform */
-# define PLATFORM_ID
-
-#endif
-
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-   the architecture of the compiler being used.  This is because
-   the compilers do not have flags that can change the architecture,
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-# elif defined(_M_X64) || defined(_M_AMD64)
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-# elif defined(_M_IX86)
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-# elif defined(_M_ARM64)
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-# elif defined(_M_ARM)
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-# elif defined(_M_MIPS)
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-# elif defined(_M_SH)
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-# else /* unknown architecture */
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-# elif defined(_M_IX86)
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-# else /* unknown architecture */
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-# elif defined(__ICCRX__)
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-# elif defined(__ICCRISCV__)
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-# elif defined(__ICCAVR__)
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-# elif defined(__ICC430__)
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-# elif defined(__ICCV850__)
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-# elif defined(__ICC8051__)
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-# else /* unknown architecture */
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-#elif defined(__ghs__)
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-# elif defined(__ppc__)
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-# elif defined(__ARM__)
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-# elif defined(__x86_64__)
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-# elif defined(__i386__)
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-# else /* unknown architecture */
-#  define ARCHITECTURE_ID ""
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-/* Convert integer to decimal digit literals.  */
-#define DEC(n)                   \
-  ('0' + (((n) / 10000000)%10)), \
-  ('0' + (((n) / 1000000)%10)),  \
-  ('0' + (((n) / 100000)%10)),   \
-  ('0' + (((n) / 10000)%10)),    \
-  ('0' + (((n) / 1000)%10)),     \
-  ('0' + (((n) / 100)%10)),      \
-  ('0' + (((n) / 10)%10)),       \
-  ('0' +  ((n) % 10))
-
-/* Convert integer to hex digit literals.  */
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-  ('0' + ((n)>>28 & 0xF)), \
-  ('0' + ((n)>>24 & 0xF)), \
-  ('0' + ((n)>>20 & 0xF)), \
-  ('0' + ((n)>>16 & 0xF)), \
-  ('0' + ((n)>>12 & 0xF)), \
-  ('0' + ((n)>>8  & 0xF)), \
-  ('0' + ((n)>>4  & 0xF)), \
-  ('0' + ((n)     & 0xF))
-
-/* Construct a string literal encoding the version number components. */
-#ifdef COMPILER_VERSION_MAJOR
-char const info_version[] = {
-  'I', 'N', 'F', 'O', ':',
-  'c','o','m','p','i','l','e','r','_','v','e','r','s','i','o','n','[',
-  COMPILER_VERSION_MAJOR,
-# ifdef COMPILER_VERSION_MINOR
-  '.', COMPILER_VERSION_MINOR,
-#  ifdef COMPILER_VERSION_PATCH
-   '.', COMPILER_VERSION_PATCH,
-#   ifdef COMPILER_VERSION_TWEAK
-    '.', COMPILER_VERSION_TWEAK,
-#   endif
-#  endif
-# endif
-  ']','\0'};
-#endif
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-/* Construct a string literal encoding the internal version number. */
-#ifdef COMPILER_VERSION_INTERNAL
-char const info_version_internal[] = {
-  'I', 'N', 'F', 'O', ':',
-  'c','o','m','p','i','l','e','r','_','v','e','r','s','i','o','n','_',
-  'i','n','t','e','r','n','a','l','[',
-  COMPILER_VERSION_INTERNAL,']','\0'};
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-
-/* Construct a string literal encoding the version number components. */
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-char const info_simulate_version[] = {
-  'I', 'N', 'F', 'O', ':',
-  's','i','m','u','l','a','t','e','_','v','e','r','s','i','o','n','[',
-  SIMULATE_VERSION_MAJOR,
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-  '.', SIMULATE_VERSION_MINOR,
-#  ifdef SIMULATE_VERSION_PATCH
-   '.', SIMULATE_VERSION_PATCH,
-#   ifdef SIMULATE_VERSION_TWEAK
-    '.', SIMULATE_VERSION_TWEAK,
-#   endif
-#  endif
-# endif
-  ']','\0'};
-#endif
-
-/* Construct the string literal in pieces to prevent the source from
-   getting matched.  Store it in a pointer rather than an array
-   because some compilers will just produce instructions to fill the
-   array rather than assigning a pointer to a static array.  */
-char const* info_platform = "INFO" ":" "platform[" PLATFORM_ID "]";
-char const* info_arch = "INFO" ":" "arch[" ARCHITECTURE_ID "]";
-
-
-
-
-#if !defined(__STDC__)
-# if (defined(_MSC_VER) && !defined(__clang__)) \
-  || (defined(__ibmxl__) || defined(__IBMC__))
-#  define C_DIALECT "90"
-# else
-#  define C_DIALECT
-# endif
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-# define C_DIALECT "11"
-#elif __STDC_VERSION__ >= 199901L
-# define C_DIALECT "99"
-#else
-# define C_DIALECT "90"
-#endif
-const char* info_language_dialect_default =
-  "INFO" ":" "dialect_default[" C_DIALECT "]";
-
-/*--------------------------------------------------------------------------*/
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-#ifdef ID_VOID_MAIN
-void main() {}
-#else
-# if defined(__CLASSIC_C__)
-int main(argc, argv) int argc; char *argv[];
-# else
-int main(int argc, char* argv[])
-# endif
-{
-  int require = 0;
-  require += info_compiler[argc];
-  require += info_platform[argc];
-  require += info_arch[argc];
-#ifdef COMPILER_VERSION_MAJOR
-  require += info_version[argc];
-#endif
-#ifdef COMPILER_VERSION_INTERNAL
-  require += info_version_internal[argc];
-#endif
-#ifdef SIMULATE_ID
-  require += info_simulate[argc];
-#endif
-#ifdef SIMULATE_VERSION_MAJOR
-  require += info_simulate_version[argc];
-#endif
-#if defined(__CRAYXE) || defined(__CRAYXC)
-  require += info_cray[argc];
-#endif
-  require += info_language_dialect_default[argc];
-  (void)argv;
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diff --git a/doc/CMakeFiles/3.18.2/CompilerIdCXX/CMakeCXXCompilerId.cpp b/doc/CMakeFiles/3.18.2/CompilerIdCXX/CMakeCXXCompilerId.cpp
deleted file mode 100644
index 37c21cafe9..0000000000
--- a/doc/CMakeFiles/3.18.2/CompilerIdCXX/CMakeCXXCompilerId.cpp
+++ /dev/null
@@ -1,663 +0,0 @@
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-#endif
-
-
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-  /* __COMO_VERSION__ = VRR */
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-# define COMPILER_VERSION_MINOR DEC(__COMO_VERSION__ % 100)
-
-#elif defined(__INTEL_COMPILER) || defined(__ICC)
-# define COMPILER_ID "Intel"
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-#  define SIMULATE_ID "MSVC"
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-# if defined(__GNUC__)
-#  define SIMULATE_ID "GNU"
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-  /* __INTEL_COMPILER = VRP */
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-#  define COMPILER_VERSION_PATCH DEC(__INTEL_COMPILER_UPDATE)
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-#  define COMPILER_VERSION_PATCH DEC(__INTEL_COMPILER   % 10)
-# endif
-# if defined(__INTEL_COMPILER_BUILD_DATE)
-  /* __INTEL_COMPILER_BUILD_DATE = YYYYMMDD */
-#  define COMPILER_VERSION_TWEAK DEC(__INTEL_COMPILER_BUILD_DATE)
-# endif
-# if defined(_MSC_VER)
-   /* _MSC_VER = VVRR */
-#  define SIMULATE_VERSION_MAJOR DEC(_MSC_VER / 100)
-#  define SIMULATE_VERSION_MINOR DEC(_MSC_VER % 100)
-# endif
-# if defined(__GNUC__)
-#  define SIMULATE_VERSION_MAJOR DEC(__GNUC__)
-# elif defined(__GNUG__)
-#  define SIMULATE_VERSION_MAJOR DEC(__GNUG__)
-# endif
-# if defined(__GNUC_MINOR__)
-#  define SIMULATE_VERSION_MINOR DEC(__GNUC_MINOR__)
-# endif
-# if defined(__GNUC_PATCHLEVEL__)
-#  define SIMULATE_VERSION_PATCH DEC(__GNUC_PATCHLEVEL__)
-# endif
-
-#elif defined(__PATHCC__)
-# define COMPILER_ID "PathScale"
-# define COMPILER_VERSION_MAJOR DEC(__PATHCC__)
-# define COMPILER_VERSION_MINOR DEC(__PATHCC_MINOR__)
-# if defined(__PATHCC_PATCHLEVEL__)
-#  define COMPILER_VERSION_PATCH DEC(__PATHCC_PATCHLEVEL__)
-# endif
-
-#elif defined(__BORLANDC__) && defined(__CODEGEARC_VERSION__)
-# define COMPILER_ID "Embarcadero"
-# define COMPILER_VERSION_MAJOR HEX(__CODEGEARC_VERSION__>>24 & 0x00FF)
-# define COMPILER_VERSION_MINOR HEX(__CODEGEARC_VERSION__>>16 & 0x00FF)
-# define COMPILER_VERSION_PATCH DEC(__CODEGEARC_VERSION__     & 0xFFFF)
-
-#elif defined(__BORLANDC__)
-# define COMPILER_ID "Borland"
-  /* __BORLANDC__ = 0xVRR */
-# define COMPILER_VERSION_MAJOR HEX(__BORLANDC__>>8)
-# define COMPILER_VERSION_MINOR HEX(__BORLANDC__ & 0xFF)
-
-#elif defined(__WATCOMC__) && __WATCOMC__ < 1200
-# define COMPILER_ID "Watcom"
-   /* __WATCOMC__ = VVRR */
-# define COMPILER_VERSION_MAJOR DEC(__WATCOMC__ / 100)
-# define COMPILER_VERSION_MINOR DEC((__WATCOMC__ / 10) % 10)
-# if (__WATCOMC__ % 10) > 0
-#  define COMPILER_VERSION_PATCH DEC(__WATCOMC__ % 10)
-# endif
-
-#elif defined(__WATCOMC__)
-# define COMPILER_ID "OpenWatcom"
-   /* __WATCOMC__ = VVRP + 1100 */
-# define COMPILER_VERSION_MAJOR DEC((__WATCOMC__ - 1100) / 100)
-# define COMPILER_VERSION_MINOR DEC((__WATCOMC__ / 10) % 10)
-# if (__WATCOMC__ % 10) > 0
-#  define COMPILER_VERSION_PATCH DEC(__WATCOMC__ % 10)
-# endif
-
-#elif defined(__SUNPRO_CC)
-# define COMPILER_ID "SunPro"
-# if __SUNPRO_CC >= 0x5100
-   /* __SUNPRO_CC = 0xVRRP */
-#  define COMPILER_VERSION_MAJOR HEX(__SUNPRO_CC>>12)
-#  define COMPILER_VERSION_MINOR HEX(__SUNPRO_CC>>4 & 0xFF)
-#  define COMPILER_VERSION_PATCH HEX(__SUNPRO_CC    & 0xF)
-# else
-   /* __SUNPRO_CC = 0xVRP */
-#  define COMPILER_VERSION_MAJOR HEX(__SUNPRO_CC>>8)
-#  define COMPILER_VERSION_MINOR HEX(__SUNPRO_CC>>4 & 0xF)
-#  define COMPILER_VERSION_PATCH HEX(__SUNPRO_CC    & 0xF)
-# endif
-
-#elif defined(__HP_aCC)
-# define COMPILER_ID "HP"
-  /* __HP_aCC = VVRRPP */
-# define COMPILER_VERSION_MAJOR DEC(__HP_aCC/10000)
-# define COMPILER_VERSION_MINOR DEC(__HP_aCC/100 % 100)
-# define COMPILER_VERSION_PATCH DEC(__HP_aCC     % 100)
-
-#elif defined(__DECCXX)
-# define COMPILER_ID "Compaq"
-  /* __DECCXX_VER = VVRRTPPPP */
-# define COMPILER_VERSION_MAJOR DEC(__DECCXX_VER/10000000)
-# define COMPILER_VERSION_MINOR DEC(__DECCXX_VER/100000  % 100)
-# define COMPILER_VERSION_PATCH DEC(__DECCXX_VER         % 10000)
-
-#elif defined(__IBMCPP__) && defined(__COMPILER_VER__)
-# define COMPILER_ID "zOS"
-  /* __IBMCPP__ = VRP */
-# define COMPILER_VERSION_MAJOR DEC(__IBMCPP__/100)
-# define COMPILER_VERSION_MINOR DEC(__IBMCPP__/10 % 10)
-# define COMPILER_VERSION_PATCH DEC(__IBMCPP__    % 10)
-
-#elif defined(__ibmxl__) && defined(__clang__)
-# define COMPILER_ID "XLClang"
-# define COMPILER_VERSION_MAJOR DEC(__ibmxl_version__)
-# define COMPILER_VERSION_MINOR DEC(__ibmxl_release__)
-# define COMPILER_VERSION_PATCH DEC(__ibmxl_modification__)
-# define COMPILER_VERSION_TWEAK DEC(__ibmxl_ptf_fix_level__)
-
-
-#elif defined(__IBMCPP__) && !defined(__COMPILER_VER__) && __IBMCPP__ >= 800
-# define COMPILER_ID "XL"
-  /* __IBMCPP__ = VRP */
-# define COMPILER_VERSION_MAJOR DEC(__IBMCPP__/100)
-# define COMPILER_VERSION_MINOR DEC(__IBMCPP__/10 % 10)
-# define COMPILER_VERSION_PATCH DEC(__IBMCPP__    % 10)
-
-#elif defined(__IBMCPP__) && !defined(__COMPILER_VER__) && __IBMCPP__ < 800
-# define COMPILER_ID "VisualAge"
-  /* __IBMCPP__ = VRP */
-# define COMPILER_VERSION_MAJOR DEC(__IBMCPP__/100)
-# define COMPILER_VERSION_MINOR DEC(__IBMCPP__/10 % 10)
-# define COMPILER_VERSION_PATCH DEC(__IBMCPP__    % 10)
-
-#elif defined(__PGI)
-# define COMPILER_ID "PGI"
-# define COMPILER_VERSION_MAJOR DEC(__PGIC__)
-# define COMPILER_VERSION_MINOR DEC(__PGIC_MINOR__)
-# if defined(__PGIC_PATCHLEVEL__)
-#  define COMPILER_VERSION_PATCH DEC(__PGIC_PATCHLEVEL__)
-# endif
-
-#elif defined(_CRAYC)
-# define COMPILER_ID "Cray"
-# define COMPILER_VERSION_MAJOR DEC(_RELEASE_MAJOR)
-# define COMPILER_VERSION_MINOR DEC(_RELEASE_MINOR)
-
-#elif defined(__TI_COMPILER_VERSION__)
-# define COMPILER_ID "TI"
-  /* __TI_COMPILER_VERSION__ = VVVRRRPPP */
-# define COMPILER_VERSION_MAJOR DEC(__TI_COMPILER_VERSION__/1000000)
-# define COMPILER_VERSION_MINOR DEC(__TI_COMPILER_VERSION__/1000   % 1000)
-# define COMPILER_VERSION_PATCH DEC(__TI_COMPILER_VERSION__        % 1000)
-
-#elif defined(__FUJITSU) || defined(__FCC_VERSION) || defined(__fcc_version)
-# define COMPILER_ID "Fujitsu"
-
-#elif defined(__ghs__)
-# define COMPILER_ID "GHS"
-/* __GHS_VERSION_NUMBER = VVVVRP */
-# ifdef __GHS_VERSION_NUMBER
-# define COMPILER_VERSION_MAJOR DEC(__GHS_VERSION_NUMBER / 100)
-# define COMPILER_VERSION_MINOR DEC(__GHS_VERSION_NUMBER / 10 % 10)
-# define COMPILER_VERSION_PATCH DEC(__GHS_VERSION_NUMBER      % 10)
-# endif
-
-#elif defined(__SCO_VERSION__)
-# define COMPILER_ID "SCO"
-
-#elif defined(__ARMCC_VERSION) && !defined(__clang__)
-# define COMPILER_ID "ARMCC"
-#if __ARMCC_VERSION >= 1000000
-  /* __ARMCC_VERSION = VRRPPPP */
-  # define COMPILER_VERSION_MAJOR DEC(__ARMCC_VERSION/1000000)
-  # define COMPILER_VERSION_MINOR DEC(__ARMCC_VERSION/10000 % 100)
-  # define COMPILER_VERSION_PATCH DEC(__ARMCC_VERSION     % 10000)
-#else
-  /* __ARMCC_VERSION = VRPPPP */
-  # define COMPILER_VERSION_MAJOR DEC(__ARMCC_VERSION/100000)
-  # define COMPILER_VERSION_MINOR DEC(__ARMCC_VERSION/10000 % 10)
-  # define COMPILER_VERSION_PATCH DEC(__ARMCC_VERSION    % 10000)
-#endif
-
-
-#elif defined(__clang__) && defined(__apple_build_version__)
-# define COMPILER_ID "AppleClang"
-# if defined(_MSC_VER)
-#  define SIMULATE_ID "MSVC"
-# endif
-# define COMPILER_VERSION_MAJOR DEC(__clang_major__)
-# define COMPILER_VERSION_MINOR DEC(__clang_minor__)
-# define COMPILER_VERSION_PATCH DEC(__clang_patchlevel__)
-# if defined(_MSC_VER)
-   /* _MSC_VER = VVRR */
-#  define SIMULATE_VERSION_MAJOR DEC(_MSC_VER / 100)
-#  define SIMULATE_VERSION_MINOR DEC(_MSC_VER % 100)
-# endif
-# define COMPILER_VERSION_TWEAK DEC(__apple_build_version__)
-
-#elif defined(__clang__) && defined(__ARMCOMPILER_VERSION)
-# define COMPILER_ID "ARMClang"
-  # define COMPILER_VERSION_MAJOR DEC(__ARMCOMPILER_VERSION/1000000)
-  # define COMPILER_VERSION_MINOR DEC(__ARMCOMPILER_VERSION/10000 % 100)
-  # define COMPILER_VERSION_PATCH DEC(__ARMCOMPILER_VERSION     % 10000)
-# define COMPILER_VERSION_INTERNAL DEC(__ARMCOMPILER_VERSION)
-
-#elif defined(__clang__)
-# define COMPILER_ID "Clang"
-# if defined(_MSC_VER)
-#  define SIMULATE_ID "MSVC"
-# endif
-# define COMPILER_VERSION_MAJOR DEC(__clang_major__)
-# define COMPILER_VERSION_MINOR DEC(__clang_minor__)
-# define COMPILER_VERSION_PATCH DEC(__clang_patchlevel__)
-# if defined(_MSC_VER)
-   /* _MSC_VER = VVRR */
-#  define SIMULATE_VERSION_MAJOR DEC(_MSC_VER / 100)
-#  define SIMULATE_VERSION_MINOR DEC(_MSC_VER % 100)
-# endif
-
-#elif defined(__GNUC__) || defined(__GNUG__)
-# define COMPILER_ID "GNU"
-# if defined(__GNUC__)
-#  define COMPILER_VERSION_MAJOR DEC(__GNUC__)
-# else
-#  define COMPILER_VERSION_MAJOR DEC(__GNUG__)
-# endif
-# if defined(__GNUC_MINOR__)
-#  define COMPILER_VERSION_MINOR DEC(__GNUC_MINOR__)
-# endif
-# if defined(__GNUC_PATCHLEVEL__)
-#  define COMPILER_VERSION_PATCH DEC(__GNUC_PATCHLEVEL__)
-# endif
-
-#elif defined(_MSC_VER)
-# define COMPILER_ID "MSVC"
-  /* _MSC_VER = VVRR */
-# define COMPILER_VERSION_MAJOR DEC(_MSC_VER / 100)
-# define COMPILER_VERSION_MINOR DEC(_MSC_VER % 100)
-# if defined(_MSC_FULL_VER)
-#  if _MSC_VER >= 1400
-    /* _MSC_FULL_VER = VVRRPPPPP */
-#   define COMPILER_VERSION_PATCH DEC(_MSC_FULL_VER % 100000)
-#  else
-    /* _MSC_FULL_VER = VVRRPPPP */
-#   define COMPILER_VERSION_PATCH DEC(_MSC_FULL_VER % 10000)
-#  endif
-# endif
-# if defined(_MSC_BUILD)
-#  define COMPILER_VERSION_TWEAK DEC(_MSC_BUILD)
-# endif
-
-#elif defined(__VISUALDSPVERSION__) || defined(__ADSPBLACKFIN__) || defined(__ADSPTS__) || defined(__ADSP21000__)
-# define COMPILER_ID "ADSP"
-#if defined(__VISUALDSPVERSION__)
-  /* __VISUALDSPVERSION__ = 0xVVRRPP00 */
-# define COMPILER_VERSION_MAJOR HEX(__VISUALDSPVERSION__>>24)
-# define COMPILER_VERSION_MINOR HEX(__VISUALDSPVERSION__>>16 & 0xFF)
-# define COMPILER_VERSION_PATCH HEX(__VISUALDSPVERSION__>>8  & 0xFF)
-#endif
-
-#elif defined(__IAR_SYSTEMS_ICC__) || defined(__IAR_SYSTEMS_ICC)
-# define COMPILER_ID "IAR"
-# if defined(__VER__) && defined(__ICCARM__)
-#  define COMPILER_VERSION_MAJOR DEC((__VER__) / 1000000)
-#  define COMPILER_VERSION_MINOR DEC(((__VER__) / 1000) % 1000)
-#  define COMPILER_VERSION_PATCH DEC((__VER__) % 1000)
-#  define COMPILER_VERSION_INTERNAL DEC(__IAR_SYSTEMS_ICC__)
-# elif defined(__VER__) && (defined(__ICCAVR__) || defined(__ICCRX__) || defined(__ICCRH850__) || defined(__ICCRL78__) || defined(__ICC430__) || defined(__ICCRISCV__) || defined(__ICCV850__) || defined(__ICC8051__))
-#  define COMPILER_VERSION_MAJOR DEC((__VER__) / 100)
-#  define COMPILER_VERSION_MINOR DEC((__VER__) - (((__VER__) / 100)*100))
-#  define COMPILER_VERSION_PATCH DEC(__SUBVERSION__)
-#  define COMPILER_VERSION_INTERNAL DEC(__IAR_SYSTEMS_ICC__)
-# endif
-
-
-/* These compilers are either not known or too old to define an
-  identification macro.  Try to identify the platform and guess that
-  it is the native compiler.  */
-#elif defined(__hpux) || defined(__hpua)
-# define COMPILER_ID "HP"
-
-#else /* unknown compiler */
-# define COMPILER_ID ""
-#endif
-
-/* Construct the string literal in pieces to prevent the source from
-   getting matched.  Store it in a pointer rather than an array
-   because some compilers will just produce instructions to fill the
-   array rather than assigning a pointer to a static array.  */
-char const* info_compiler = "INFO" ":" "compiler[" COMPILER_ID "]";
-#ifdef SIMULATE_ID
-char const* info_simulate = "INFO" ":" "simulate[" SIMULATE_ID "]";
-#endif
-
-#ifdef __QNXNTO__
-char const* qnxnto = "INFO" ":" "qnxnto[]";
-#endif
-
-#if defined(__CRAYXE) || defined(__CRAYXC)
-char const *info_cray = "INFO" ":" "compiler_wrapper[CrayPrgEnv]";
-#endif
-
-#define STRINGIFY_HELPER(X) #X
-#define STRINGIFY(X) STRINGIFY_HELPER(X)
-
-/* Identify known platforms by name.  */
-#if defined(__linux) || defined(__linux__) || defined(linux)
-# define PLATFORM_ID "Linux"
-
-#elif defined(__CYGWIN__)
-# define PLATFORM_ID "Cygwin"
-
-#elif defined(__MINGW32__)
-# define PLATFORM_ID "MinGW"
-
-#elif defined(__APPLE__)
-# define PLATFORM_ID "Darwin"
-
-#elif defined(_WIN32) || defined(__WIN32__) || defined(WIN32)
-# define PLATFORM_ID "Windows"
-
-#elif defined(__FreeBSD__) || defined(__FreeBSD)
-# define PLATFORM_ID "FreeBSD"
-
-#elif defined(__NetBSD__) || defined(__NetBSD)
-# define PLATFORM_ID "NetBSD"
-
-#elif defined(__OpenBSD__) || defined(__OPENBSD)
-# define PLATFORM_ID "OpenBSD"
-
-#elif defined(__sun) || defined(sun)
-# define PLATFORM_ID "SunOS"
-
-#elif defined(_AIX) || defined(__AIX) || defined(__AIX__) || defined(__aix) || defined(__aix__)
-# define PLATFORM_ID "AIX"
-
-#elif defined(__hpux) || defined(__hpux__)
-# define PLATFORM_ID "HP-UX"
-
-#elif defined(__HAIKU__)
-# define PLATFORM_ID "Haiku"
-
-#elif defined(__BeOS) || defined(__BEOS__) || defined(_BEOS)
-# define PLATFORM_ID "BeOS"
-
-#elif defined(__QNX__) || defined(__QNXNTO__)
-# define PLATFORM_ID "QNX"
-
-#elif defined(__tru64) || defined(_tru64) || defined(__TRU64__)
-# define PLATFORM_ID "Tru64"
-
-#elif defined(__riscos) || defined(__riscos__)
-# define PLATFORM_ID "RISCos"
-
-#elif defined(__sinix) || defined(__sinix__) || defined(__SINIX__)
-# define PLATFORM_ID "SINIX"
-
-#elif defined(__UNIX_SV__)
-# define PLATFORM_ID "UNIX_SV"
-
-#elif defined(__bsdos__)
-# define PLATFORM_ID "BSDOS"
-
-#elif defined(_MPRAS) || defined(MPRAS)
-# define PLATFORM_ID "MP-RAS"
-
-#elif defined(__osf) || defined(__osf__)
-# define PLATFORM_ID "OSF1"
-
-#elif defined(_SCO_SV) || defined(SCO_SV) || defined(sco_sv)
-# define PLATFORM_ID "SCO_SV"
-
-#elif defined(__ultrix) || defined(__ultrix__) || defined(_ULTRIX)
-# define PLATFORM_ID "ULTRIX"
-
-#elif defined(__XENIX__) || defined(_XENIX) || defined(XENIX)
-# define PLATFORM_ID "Xenix"
-
-#elif defined(__WATCOMC__)
-# if defined(__LINUX__)
-#  define PLATFORM_ID "Linux"
-
-# elif defined(__DOS__)
-#  define PLATFORM_ID "DOS"
-
-# elif defined(__OS2__)
-#  define PLATFORM_ID "OS2"
-
-# elif defined(__WINDOWS__)
-#  define PLATFORM_ID "Windows3x"
-
-# elif defined(__VXWORKS__)
-#  define PLATFORM_ID "VxWorks"
-
-# else /* unknown platform */
-#  define PLATFORM_ID
-# endif
-
-#elif defined(__INTEGRITY)
-# if defined(INT_178B)
-#  define PLATFORM_ID "Integrity178"
-
-# else /* regular Integrity */
-#  define PLATFORM_ID "Integrity"
-# endif
-
-#else /* unknown platform */
-# define PLATFORM_ID
-
-#endif
-
-/* For windows compilers MSVC and Intel we can determine
-   the architecture of the compiler being used.  This is because
-   the compilers do not have flags that can change the architecture,
-   but rather depend on which compiler is being used
-*/
-#if defined(_WIN32) && defined(_MSC_VER)
-# if defined(_M_IA64)
-#  define ARCHITECTURE_ID "IA64"
-
-# elif defined(_M_X64) || defined(_M_AMD64)
-#  define ARCHITECTURE_ID "x64"
-
-# elif defined(_M_IX86)
-#  define ARCHITECTURE_ID "X86"
-
-# elif defined(_M_ARM64)
-#  define ARCHITECTURE_ID "ARM64"
-
-# elif defined(_M_ARM)
-#  if _M_ARM == 4
-#   define ARCHITECTURE_ID "ARMV4I"
-#  elif _M_ARM == 5
-#   define ARCHITECTURE_ID "ARMV5I"
-#  else
-#   define ARCHITECTURE_ID "ARMV" STRINGIFY(_M_ARM)
-#  endif
-
-# elif defined(_M_MIPS)
-#  define ARCHITECTURE_ID "MIPS"
-
-# elif defined(_M_SH)
-#  define ARCHITECTURE_ID "SHx"
-
-# else /* unknown architecture */
-#  define ARCHITECTURE_ID ""
-# endif
-
-#elif defined(__WATCOMC__)
-# if defined(_M_I86)
-#  define ARCHITECTURE_ID "I86"
-
-# elif defined(_M_IX86)
-#  define ARCHITECTURE_ID "X86"
-
-# else /* unknown architecture */
-#  define ARCHITECTURE_ID ""
-# endif
-
-#elif defined(__IAR_SYSTEMS_ICC__) || defined(__IAR_SYSTEMS_ICC)
-# if defined(__ICCARM__)
-#  define ARCHITECTURE_ID "ARM"
-
-# elif defined(__ICCRX__)
-#  define ARCHITECTURE_ID "RX"
-
-# elif defined(__ICCRH850__)
-#  define ARCHITECTURE_ID "RH850"
-
-# elif defined(__ICCRL78__)
-#  define ARCHITECTURE_ID "RL78"
-
-# elif defined(__ICCRISCV__)
-#  define ARCHITECTURE_ID "RISCV"
-
-# elif defined(__ICCAVR__)
-#  define ARCHITECTURE_ID "AVR"
-
-# elif defined(__ICC430__)
-#  define ARCHITECTURE_ID "MSP430"
-
-# elif defined(__ICCV850__)
-#  define ARCHITECTURE_ID "V850"
-
-# elif defined(__ICC8051__)
-#  define ARCHITECTURE_ID "8051"
-
-# else /* unknown architecture */
-#  define ARCHITECTURE_ID ""
-# endif
-
-#elif defined(__ghs__)
-# if defined(__PPC64__)
-#  define ARCHITECTURE_ID "PPC64"
-
-# elif defined(__ppc__)
-#  define ARCHITECTURE_ID "PPC"
-
-# elif defined(__ARM__)
-#  define ARCHITECTURE_ID "ARM"
-
-# elif defined(__x86_64__)
-#  define ARCHITECTURE_ID "x64"
-
-# elif defined(__i386__)
-#  define ARCHITECTURE_ID "X86"
-
-# else /* unknown architecture */
-#  define ARCHITECTURE_ID ""
-# endif
-#else
-#  define ARCHITECTURE_ID
-#endif
-
-/* Convert integer to decimal digit literals.  */
-#define DEC(n)                   \
-  ('0' + (((n) / 10000000)%10)), \
-  ('0' + (((n) / 1000000)%10)),  \
-  ('0' + (((n) / 100000)%10)),   \
-  ('0' + (((n) / 10000)%10)),    \
-  ('0' + (((n) / 1000)%10)),     \
-  ('0' + (((n) / 100)%10)),      \
-  ('0' + (((n) / 10)%10)),       \
-  ('0' +  ((n) % 10))
-
-/* Convert integer to hex digit literals.  */
-#define HEX(n)             \
-  ('0' + ((n)>>28 & 0xF)), \
-  ('0' + ((n)>>24 & 0xF)), \
-  ('0' + ((n)>>20 & 0xF)), \
-  ('0' + ((n)>>16 & 0xF)), \
-  ('0' + ((n)>>12 & 0xF)), \
-  ('0' + ((n)>>8  & 0xF)), \
-  ('0' + ((n)>>4  & 0xF)), \
-  ('0' + ((n)     & 0xF))
-
-/* Construct a string literal encoding the version number components. */
-#ifdef COMPILER_VERSION_MAJOR
-char const info_version[] = {
-  'I', 'N', 'F', 'O', ':',
-  'c','o','m','p','i','l','e','r','_','v','e','r','s','i','o','n','[',
-  COMPILER_VERSION_MAJOR,
-# ifdef COMPILER_VERSION_MINOR
-  '.', COMPILER_VERSION_MINOR,
-#  ifdef COMPILER_VERSION_PATCH
-   '.', COMPILER_VERSION_PATCH,
-#   ifdef COMPILER_VERSION_TWEAK
-    '.', COMPILER_VERSION_TWEAK,
-#   endif
-#  endif
-# endif
-  ']','\0'};
-#endif
-
-/* Construct a string literal encoding the internal version number. */
-#ifdef COMPILER_VERSION_INTERNAL
-char const info_version_internal[] = {
-  'I', 'N', 'F', 'O', ':',
-  'c','o','m','p','i','l','e','r','_','v','e','r','s','i','o','n','_',
-  'i','n','t','e','r','n','a','l','[',
-  COMPILER_VERSION_INTERNAL,']','\0'};
-#endif
-
-/* Construct a string literal encoding the version number components. */
-#ifdef SIMULATE_VERSION_MAJOR
-char const info_simulate_version[] = {
-  'I', 'N', 'F', 'O', ':',
-  's','i','m','u','l','a','t','e','_','v','e','r','s','i','o','n','[',
-  SIMULATE_VERSION_MAJOR,
-# ifdef SIMULATE_VERSION_MINOR
-  '.', SIMULATE_VERSION_MINOR,
-#  ifdef SIMULATE_VERSION_PATCH
-   '.', SIMULATE_VERSION_PATCH,
-#   ifdef SIMULATE_VERSION_TWEAK
-    '.', SIMULATE_VERSION_TWEAK,
-#   endif
-#  endif
-# endif
-  ']','\0'};
-#endif
-
-/* Construct the string literal in pieces to prevent the source from
-   getting matched.  Store it in a pointer rather than an array
-   because some compilers will just produce instructions to fill the
-   array rather than assigning a pointer to a static array.  */
-char const* info_platform = "INFO" ":" "platform[" PLATFORM_ID "]";
-char const* info_arch = "INFO" ":" "arch[" ARCHITECTURE_ID "]";
-
-
-
-
-#if defined(__INTEL_COMPILER) && defined(_MSVC_LANG) && _MSVC_LANG < 201403L
-#  if defined(__INTEL_CXX11_MODE__)
-#    if defined(__cpp_aggregate_nsdmi)
-#      define CXX_STD 201402L
-#    else
-#      define CXX_STD 201103L
-#    endif
-#  else
-#    define CXX_STD 199711L
-#  endif
-#elif defined(_MSC_VER) && defined(_MSVC_LANG)
-#  define CXX_STD _MSVC_LANG
-#else
-#  define CXX_STD __cplusplus
-#endif
-
-const char* info_language_dialect_default = "INFO" ":" "dialect_default["
-#if CXX_STD > 201703L
-  "20"
-#elif CXX_STD >= 201703L
-  "17"
-#elif CXX_STD >= 201402L
-  "14"
-#elif CXX_STD >= 201103L
-  "11"
-#else
-  "98"
-#endif
-"]";
-
-/*--------------------------------------------------------------------------*/
-
-int main(int argc, char* argv[])
-{
-  int require = 0;
-  require += info_compiler[argc];
-  require += info_platform[argc];
-#ifdef COMPILER_VERSION_MAJOR
-  require += info_version[argc];
-#endif
-#ifdef COMPILER_VERSION_INTERNAL
-  require += info_version_internal[argc];
-#endif
-#ifdef SIMULATE_ID
-  require += info_simulate[argc];
-#endif
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-#include <stdio.h>
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-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pair_eam_fs_intel.h"
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-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pair_gayberne_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_charmm_coul_charmm_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_charmm_coul_long_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_cut_coul_long_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_cut_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_long_coul_long_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pair_rebo_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pair_sw_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pair_tersoff_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pppm_disp_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pppm_electrode_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/pppm_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTEL/verlet_lrt_intel.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_coul_shield.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_drip.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_ilp_graphene_hbn.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_ilp_tmd.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_kolmogorov_crespi_full.h"
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-  "/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_lebedeva_z.h"
-  "/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_saip_metal.h"
-  "/Users/ngoccuongnguyen/lammps/src/KIM/fix_store_kim.h"
-  "/Users/ngoccuongnguyen/lammps/src/KIM/kim_command.h"
-  "/Users/ngoccuongnguyen/lammps/src/KIM/pair_kim.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/angle_charmm_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/angle_class2_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/angle_cosine_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_angle_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_atomic_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_bond_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_dpd_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_full_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_hybrid_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_sphere_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_spin_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/bond_class2_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/bond_fene_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_ave_sphere_atom_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_orientorder_atom_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_temp_deform_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_temp_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_charmm_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_class2_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_harmonic_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_opls_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/dynamical_matrix_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_acks2_reaxff_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_deform_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_dpd_energy_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_enforce2d_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_eos_table_rx_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_freeze_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_gravity_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_langevin_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_minimize_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_momentum_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_neigh_history_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nph_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_npt_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nve_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nve_sphere_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nvt_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nvt_sllod_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_property_atom_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_qeq_reaxff_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_reaxff_bonds_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_reaxff_species_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_rx_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_setforce_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_shardlow_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_wall_lj93_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_wall_reflect_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/improper_class2_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/improper_harmonic_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/min_cg_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/nbin_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/nbin_ssa_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/npair_copy_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_adp_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_buck_coul_cut_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_cut_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_debye_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_dsf_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_long_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_wolf_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_ext_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_ext_tstat_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_fdt_energy_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_tstat_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_eam_alloy_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_eam_fs_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_eam_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_exp6_rx_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_gran_hooke_history_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_hybrid_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_hybrid_overlay_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_morse_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_pace_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_reaxff_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_snap_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_sw_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_table_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_table_rx_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_tersoff_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_tersoff_mod_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_tersoff_zbl_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_vashishta_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/pppm_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/region_block_kokkos.h"
-  "/Users/ngoccuongnguyen/lammps/src/KOKKOS/third_order_kokkos.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/ewald.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/ewald_dipole.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/fix_tune_kspace.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/msm_cg.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pair_born_coul_long.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pair_buck_coul_long.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pair_buck_coul_msm.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pair_coul_msm.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_charmmfsw_coul_long.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_coul_long.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_coul_msm.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_tip4p_long.h"
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-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_long_tip4p_long.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pair_tip4p_long.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pppm.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_cg.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_dipole.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_dipole_spin.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_disp.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_disp_tip4p.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_stagger.h"
-  "/Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_tip4p.h"
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-  "/Users/ngoccuongnguyen/lammps/src/LATBOLTZ/fix_lb_viscous.h"
-  "/Users/ngoccuongnguyen/lammps/src/LATTE/fix_latte.h"
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-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/compute_smd_contact_radius.h"
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-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/compute_smd_ulsph_num_neighs.h"
-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/compute_smd_ulsph_strain.h"
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-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/compute_smd_vol.h"
-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix_smd_adjust_dt.h"
-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix_smd_integrate_tlsph.h"
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-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix_smd_move_triangulated_surface.h"
-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix_smd_setvel.h"
-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix_smd_tlsph_reference_configuration.h"
-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix_smd_wall_surface.h"
-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair_smd_hertz.h"
-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair_smd_tlsph.h"
-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair_smd_triangulated_surface.h"
-  "/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair_smd_ulsph.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANIFOLD/fix_manifoldforce.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANIFOLD/fix_nve_manifold_rattle.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANIFOLD/fix_nvt_manifold_rattle.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/fix_qeq_comb.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_adp.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo_morse.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_atm.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_bop.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb3.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_alloy.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_cd.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_fs.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_he.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip_multi.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eim.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_extep.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw_zbl.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_lcbop.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_local_density.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_spline.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_sw_spline.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_nb3b_harmonic.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_polymorphic.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_rebo.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_angle_table.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_mod.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff.h"
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-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_mod_c.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_table.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_zbl.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_threebody_table.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_vashishta.h"
-  "/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_vashishta_table.h"
-  "/Users/ngoccuongnguyen/lammps/src/MC/fix_atom_swap.h"
-  "/Users/ngoccuongnguyen/lammps/src/MC/fix_bond_break.h"
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-  "/Users/ngoccuongnguyen/lammps/src/MC/fix_bond_swap.h"
-  "/Users/ngoccuongnguyen/lammps/src/MC/fix_charge_regulation.h"
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-  "/Users/ngoccuongnguyen/lammps/src/MC/fix_mol_swap.h"
-  "/Users/ngoccuongnguyen/lammps/src/MC/fix_tfmc.h"
-  "/Users/ngoccuongnguyen/lammps/src/MC/fix_widom.h"
-  "/Users/ngoccuongnguyen/lammps/src/MC/pair_dsmc.h"
-  "/Users/ngoccuongnguyen/lammps/src/MDI/fix_mdi_aimd.h"
-  "/Users/ngoccuongnguyen/lammps/src/MDI/fix_mdi_engine.h"
-  "/Users/ngoccuongnguyen/lammps/src/MDI/mdi_command.h"
-  "/Users/ngoccuongnguyen/lammps/src/MEAM/pair_meam.h"
-  "/Users/ngoccuongnguyen/lammps/src/MESONT/atom_vec_mesont.h"
-  "/Users/ngoccuongnguyen/lammps/src/MESONT/compute_mesont.h"
-  "/Users/ngoccuongnguyen/lammps/src/MESONT/pair_mesocnt.h"
-  "/Users/ngoccuongnguyen/lammps/src/MESONT/pair_mesont_tpm.h"
-  "/Users/ngoccuongnguyen/lammps/src/MGPT/pair_mgpt.h"
-  "/Users/ngoccuongnguyen/lammps/src/MISC/bond_special.h"
-  "/Users/ngoccuongnguyen/lammps/src/MISC/compute_viscosity_cos.h"
-  "/Users/ngoccuongnguyen/lammps/src/MISC/fix_accelerate_cos.h"
-  "/Users/ngoccuongnguyen/lammps/src/MISC/fix_imd.h"
-  "/Users/ngoccuongnguyen/lammps/src/MISC/fix_ipi.h"
-  "/Users/ngoccuongnguyen/lammps/src/MISC/fix_srp.h"
-  "/Users/ngoccuongnguyen/lammps/src/MISC/pair_agni.h"
-  "/Users/ngoccuongnguyen/lammps/src/MISC/pair_list.h"
-  "/Users/ngoccuongnguyen/lammps/src/MISC/pair_srp.h"
-  "/Users/ngoccuongnguyen/lammps/src/MISC/pair_tracker.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-HDNNP/pair_hdnnp.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-IAP/compute_mliap.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-IAP/pair_mliap.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-PACE/pair_pace.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-POD/compute_podfit.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-QUIP/pair_quip.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-RANN/pair_rann.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_sna_atom.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_snad_atom.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_snap.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_snav_atom.h"
-  "/Users/ngoccuongnguyen/lammps/src/ML-SNAP/pair_snap.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOFFF/angle_class2_p6.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOFFF/angle_cosine_buck6d.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOFFF/improper_inversion_harmonic.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOFFF/pair_buck6d_coul_gauss_dsf.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOFFF/pair_buck6d_coul_gauss_long.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_charmm.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_cosine.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_cosine_squared.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_harmonic.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_table.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_angle.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_bond.h"
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-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_fene.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_fene_expand.h"
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-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_harmonic.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_morse.h"
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-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_table.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_charmm.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_charmmfsw.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_harmonic.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_multi_harmonic.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_opls.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_table.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/fix_cmap.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/improper_cvff.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/improper_harmonic.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/improper_umbrella.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_hbond_dreiding_lj.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_hbond_dreiding_morse.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_lj_charmm_coul_charmm.h"
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-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_lj_cut_tip4p_cut.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_tip4p_cut.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLFILE/dump_molfile.h"
-  "/Users/ngoccuongnguyen/lammps/src/MOLFILE/reader_molfile.h"
-  "/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_atom_mpiio.h"
-  "/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_cfg_mpiio.h"
-  "/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_custom_mpiio.h"
-  "/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_xyz_mpiio.h"
-  "/Users/ngoccuongnguyen/lammps/src/MSCG/fix_mscg.h"
-  "/Users/ngoccuongnguyen/lammps/src/NETCDF/dump_netcdf.h"
-  "/Users/ngoccuongnguyen/lammps/src/NETCDF/dump_netcdf_mpiio.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_charmm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_class2_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_delta_omp.h"
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-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_dipole_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_fourier_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_fourier_simple_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_harmonic_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_quartic_omp.h"
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-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_class2_omp.h"
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-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_fene_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_gromos_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_harmonic_omp.h"
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-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_harmonic_shift_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_morse_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_nonlinear_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_quartic_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_table_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_charmm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_class2_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_cosine_shift_exp_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_fourier_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_harmonic_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_helix_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_multi_harmonic_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_nharmonic_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_opls_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_quadratic_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_table_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/ewald_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_gravity_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_neigh_history_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nph_asphere_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nph_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nph_sphere_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_npt_asphere_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_npt_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_npt_sphere_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nve_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nve_sphere_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nvt_asphere_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nvt_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nvt_sllod_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nvt_sphere_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_qeq_comb_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_qeq_reaxff_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nph_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_npt_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nve_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nvt_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_small_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/improper_class2_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/improper_cossq_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/improper_cvff_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/improper_fourier_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/improper_harmonic_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/improper_ring_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/improper_umbrella_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/msm_cg_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/msm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_full_bin_atomonly_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_full_bin_ghost_omp.h"
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-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_half_bin_atomonly_newton_omp.h"
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-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_half_size_bin_newtoff_omp.h"
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-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_half_size_multi_newtoff_omp.h"
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-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_half_size_multi_old_newton_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_half_size_multi_old_newton_tri_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_half_size_nsq_newtoff_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_half_size_nsq_newton_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_halffull_newtoff_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_halffull_newton_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/npair_skip_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_adp_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_agni_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_airebo_morse_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_airebo_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_beck_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_born_coul_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_born_coul_msm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_born_coul_wolf_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_born_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_brownian_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_brownian_poly_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_buck_coul_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_buck_coul_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_buck_coul_msm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_buck_long_coul_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_buck_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_colloid_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_comb_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_coul_cut_global_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_coul_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_coul_cut_soft_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_coul_debye_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_coul_diel_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_coul_dsf_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_coul_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_coul_long_soft_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_coul_msm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_coul_wolf_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_dpd_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_dpd_tstat_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_eam_alloy_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_eam_fs_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_eam_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_edip_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_eim_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_gauss_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_gauss_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_gayberne_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_gran_hertz_history_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_gran_hooke_history_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_gran_hooke_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_harmonic_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_hbond_dreiding_lj_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_hbond_dreiding_morse_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj96_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_charmm_coul_charmm_implicit_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_charmm_coul_charmm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_charmm_coul_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_charmm_coul_long_soft_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_charmm_coul_msm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_class2_coul_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_class2_coul_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_class2_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cubic_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_cut_dielectric_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_cut_soft_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_debye_dielectric_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_debye_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_dsf_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_long_dielectric_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_long_soft_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_msm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_wolf_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_dipole_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_soft_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_thole_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_tip4p_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_tip4p_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_tip4p_long_soft_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_expand_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_gromacs_coul_gromacs_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_gromacs_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_long_coul_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_long_tip4p_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_relres_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sdk_coul_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sdk_coul_msm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sdk_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sf_dipole_sf_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_smooth_linear_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_smooth_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lubricate_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lubricate_poly_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_meam_spline_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_morse_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_morse_smooth_linear_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_nm_cut_coul_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_nm_cut_coul_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_nm_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_peri_lps_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_peri_pmb_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_reaxff_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_rebo_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_resquared_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_soft_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_sw_mod_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_sw_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_table_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_mod_c_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_mod_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_table_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_zbl_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tip4p_cut_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tip4p_long_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tip4p_long_soft_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_ufm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_vashishta_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_vashishta_table_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_yukawa_colloid_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_yukawa_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_zbl_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_cg_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_disp_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_disp_tip4p_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_tip4p_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPENMP/respa_omp.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_eam_alloy_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_eam_fs_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_eam_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_ilp_graphene_hbn_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_ilp_tmd_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_charmm_coul_long_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_cut_coul_long_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_cut_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_cut_tip4p_long_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_long_coul_long_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_morse_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_saip_metal_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/OPT/pair_ufm_opt.h"
-  "/Users/ngoccuongnguyen/lammps/src/ORIENT/fix_orient_bcc.h"
-  "/Users/ngoccuongnguyen/lammps/src/ORIENT/fix_orient_eco.h"
-  "/Users/ngoccuongnguyen/lammps/src/ORIENT/fix_orient_fcc.h"
-  "/Users/ngoccuongnguyen/lammps/src/PERI/atom_vec_peri.h"
-  "/Users/ngoccuongnguyen/lammps/src/PERI/compute_damage_atom.h"
-  "/Users/ngoccuongnguyen/lammps/src/PERI/compute_dilatation_atom.h"
-  "/Users/ngoccuongnguyen/lammps/src/PERI/compute_plasticity_atom.h"
-  "/Users/ngoccuongnguyen/lammps/src/PERI/fix_peri_neigh.h"
-  "/Users/ngoccuongnguyen/lammps/src/PERI/pair_peri_eps.h"
-  "/Users/ngoccuongnguyen/lammps/src/PERI/pair_peri_lps.h"
-  "/Users/ngoccuongnguyen/lammps/src/PERI/pair_peri_pmb.h"
-  "/Users/ngoccuongnguyen/lammps/src/PERI/pair_peri_ves.h"
-  "/Users/ngoccuongnguyen/lammps/src/PHONON/dynamical_matrix.h"
-  "/Users/ngoccuongnguyen/lammps/src/PHONON/fix_phonon.h"
-  "/Users/ngoccuongnguyen/lammps/src/PHONON/third_order.h"
-  "/Users/ngoccuongnguyen/lammps/src/PLUGIN/plugin.h"
-  "/Users/ngoccuongnguyen/lammps/src/PLUMED/fix_plumed.h"
-  "/Users/ngoccuongnguyen/lammps/src/POEMS/fix_poems.h"
-  "/Users/ngoccuongnguyen/lammps/src/PTM/compute_ptm_atom.h"
-  "/Users/ngoccuongnguyen/lammps/src/PYTHON/fix_python_invoke.h"
-  "/Users/ngoccuongnguyen/lammps/src/PYTHON/fix_python_move.h"
-  "/Users/ngoccuongnguyen/lammps/src/PYTHON/pair_python.h"
-  "/Users/ngoccuongnguyen/lammps/src/QEQ/fix_qeq_dynamic.h"
-  "/Users/ngoccuongnguyen/lammps/src/QEQ/fix_qeq_fire.h"
-  "/Users/ngoccuongnguyen/lammps/src/QEQ/fix_qeq_point.h"
-  "/Users/ngoccuongnguyen/lammps/src/QEQ/fix_qeq_shielded.h"
-  "/Users/ngoccuongnguyen/lammps/src/QEQ/fix_qeq_slater.h"
-  "/Users/ngoccuongnguyen/lammps/src/QMMM/fix_qmmm.h"
-  "/Users/ngoccuongnguyen/lammps/src/QTB/fix_qbmsst.h"
-  "/Users/ngoccuongnguyen/lammps/src/QTB/fix_qtb.h"
-  "/Users/ngoccuongnguyen/lammps/src/REACTION/fix_bond_react.h"
-  "/Users/ngoccuongnguyen/lammps/src/REAXFF/compute_spec_atom.h"
-  "/Users/ngoccuongnguyen/lammps/src/REAXFF/fix_acks2_reaxff.h"
-  "/Users/ngoccuongnguyen/lammps/src/REAXFF/fix_qeq_reaxff.h"
-  "/Users/ngoccuongnguyen/lammps/src/REAXFF/fix_reaxff.h"
-  "/Users/ngoccuongnguyen/lammps/src/REAXFF/fix_reaxff_bonds.h"
-  "/Users/ngoccuongnguyen/lammps/src/REAXFF/fix_reaxff_species.h"
-  "/Users/ngoccuongnguyen/lammps/src/REAXFF/pair_reaxff.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/compute_event_displace.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/compute_pressure_grem.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/fix_event_hyper.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/fix_event_prd.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/fix_event_tad.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/fix_grem.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/fix_hyper_global.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/fix_hyper_local.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/fix_neb.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/fix_pimd.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/hyper.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/neb.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/prd.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/tad.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/temper.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/temper_grem.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/temper_npt.h"
-  "/Users/ngoccuongnguyen/lammps/src/REPLICA/verlet_split.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/compute_erotate_rigid.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/compute_ke_rigid.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/compute_rigid_local.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_ehex.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_rattle.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_rigid.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_rigid_nph.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_rigid_nph_small.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_rigid_npt.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_rigid_npt_small.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_rigid_nve.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_rigid_nve_small.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_rigid_nvt.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_rigid_nvt_small.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_rigid_small.h"
-  "/Users/ngoccuongnguyen/lammps/src/RIGID/fix_shake.h"
-  "/Users/ngoccuongnguyen/lammps/src/SCAFACOS/scafacos.h"
-  "/Users/ngoccuongnguyen/lammps/src/SHOCK/fix_append_atoms.h"
-  "/Users/ngoccuongnguyen/lammps/src/SHOCK/fix_msst.h"
-  "/Users/ngoccuongnguyen/lammps/src/SHOCK/fix_nphug.h"
-  "/Users/ngoccuongnguyen/lammps/src/SHOCK/fix_wall_piston.h"
-  "/Users/ngoccuongnguyen/lammps/src/SMTBQ/pair_smatb.h"
-  "/Users/ngoccuongnguyen/lammps/src/SMTBQ/pair_smatb_single.h"
-  "/Users/ngoccuongnguyen/lammps/src/SMTBQ/pair_smtbq.h"
-  "/Users/ngoccuongnguyen/lammps/src/SPH/atom_vec_sph.h"
-  "/Users/ngoccuongnguyen/lammps/src/SPH/compute_sph_e_atom.h"
-  "/Users/ngoccuongnguyen/lammps/src/SPH/compute_sph_rho_atom.h"
-  "/Users/ngoccuongnguyen/lammps/src/SPH/compute_sph_t_atom.h"
-  "/Users/ngoccuongnguyen/lammps/src/SPH/fix_sph.h"
-  "/Users/ngoccuongnguyen/lammps/src/SPH/fix_sph_stationary.h"
-  "/Users/ngoccuongnguyen/lammps/src/SPH/pair_sph_heatconduction.h"
-  "/Users/ngoccuongnguyen/lammps/src/SPH/pair_sph_idealgas.h"
-  "/Users/ngoccuongnguyen/lammps/src/SPH/pair_sph_lj.h"
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-
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-
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-
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-
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-
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-
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-
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-
-/Users/ngoccuongnguyen/lammps/src/AWPMD/fix_nve_awpmd.h
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-/Users/ngoccuongnguyen/lammps/src/AWPMD/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/AWPMD/pair_awpmd_cut.h
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-
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-compute.h
-/Users/ngoccuongnguyen/lammps/src/BOCS/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/BOCS/fix_bocs.h
-fix.h
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-/Users/ngoccuongnguyen/lammps/src/BODY/body.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/body_rounded_polygon.h
-atom_vec_body.h
-/Users/ngoccuongnguyen/lammps/src/BODY/atom_vec_body.h
-body.h
-/Users/ngoccuongnguyen/lammps/src/BODY/body.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/body_rounded_polyhedron.h
-atom_vec_body.h
-/Users/ngoccuongnguyen/lammps/src/BODY/atom_vec_body.h
-body.h
-/Users/ngoccuongnguyen/lammps/src/BODY/body.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/compute_body_local.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/BODY/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/compute_temp_body.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/BODY/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_nh_body.h
-fix_nh.h
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_nh.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_nph_body.h
-fix_nh_body.h
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_nh_body.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_npt_body.h
-fix_nh_body.h
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_nh_body.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_nve_body.h
-fix_nve.h
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_nve.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_nvt_body.h
-fix_nh_body.h
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_nh_body.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_wall_body_polygon.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/BODY/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/fix_wall_body_polyhedron.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/BODY/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/pair_body_nparticle.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/BODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/pair_body_rounded_polygon.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/BODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/BODY/pair_body_rounded_polyhedron.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/BODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/BPM/atom_vec_bpm_sphere.h
-atom_vec.h
-/Users/ngoccuongnguyen/lammps/src/BPM/atom_vec.h
-
-/Users/ngoccuongnguyen/lammps/src/BPM/bond_bpm.h
-bond.h
-/Users/ngoccuongnguyen/lammps/src/BPM/bond.h
-vector
--
-
-/Users/ngoccuongnguyen/lammps/src/BPM/bond_bpm_rotational.h
-bond_bpm.h
-/Users/ngoccuongnguyen/lammps/src/BPM/bond_bpm.h
-
-/Users/ngoccuongnguyen/lammps/src/BPM/bond_bpm_spring.h
-bond_bpm.h
-/Users/ngoccuongnguyen/lammps/src/BPM/bond_bpm.h
-
-/Users/ngoccuongnguyen/lammps/src/BPM/compute_nbond_atom.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/BPM/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/BPM/fix_nve_bpm_sphere.h
-fix_nve.h
-/Users/ngoccuongnguyen/lammps/src/BPM/fix_nve.h
-
-/Users/ngoccuongnguyen/lammps/src/BPM/pair_bpm_spring.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/BPM/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/BROWNIAN/fix_brownian.h
-fix_brownian_base.h
-/Users/ngoccuongnguyen/lammps/src/BROWNIAN/fix_brownian_base.h
-
-/Users/ngoccuongnguyen/lammps/src/BROWNIAN/fix_brownian_asphere.h
-fix_brownian_base.h
-/Users/ngoccuongnguyen/lammps/src/BROWNIAN/fix_brownian_base.h
-
-/Users/ngoccuongnguyen/lammps/src/BROWNIAN/fix_brownian_base.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/BROWNIAN/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/BROWNIAN/fix_brownian_sphere.h
-fix_brownian_base.h
-/Users/ngoccuongnguyen/lammps/src/BROWNIAN/fix_brownian_base.h
-
-/Users/ngoccuongnguyen/lammps/src/BROWNIAN/fix_propel_self.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/BROWNIAN/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/atom_vec_oxdna.h
-atom_vec.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/atom_vec.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/bond_oxdna2_fene.h
-bond_oxdna_fene.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/bond_oxdna_fene.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/bond_oxdna_fene.h
-bond.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/bond.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/bond_oxrna2_fene.h
-bond_oxdna_fene.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/bond_oxdna_fene.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/fix_nve_dot.h
-fix_nve.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/fix_nve.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/fix_nve_dotc_langevin.h
-fix_nve.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/fix_nve.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna2_coaxstk.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna2_dh.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna2_excv.h
-pair_oxdna_excv.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna_excv.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna_coaxstk.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna_excv.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna_hbond.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna_stk.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna_xstk.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxrna2_dh.h
-pair_oxdna2_dh.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna2_dh.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxrna2_excv.h
-pair_oxdna_excv.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna_excv.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxrna2_hbond.h
-pair_oxdna_hbond.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxdna_hbond.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxrna2_stk.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair_oxrna2_xstk.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CG-DNA/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-SDK/angle_sdk.h
-angle.h
-/Users/ngoccuongnguyen/lammps/src/CG-SDK/angle.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-SDK/pair_lj_sdk.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CG-SDK/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-SDK/pair_lj_sdk_coul_long.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CG-SDK/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CG-SDK/pair_lj_sdk_coul_msm.h
-pair_lj_sdk_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/CG-SDK/pair_lj_sdk_coul_long.h
-
-/Users/ngoccuongnguyen/lammps/src/CLASS2/angle_class2.h
-angle.h
-/Users/ngoccuongnguyen/lammps/src/CLASS2/angle.h
-
-/Users/ngoccuongnguyen/lammps/src/CLASS2/bond_class2.h
-bond.h
-/Users/ngoccuongnguyen/lammps/src/CLASS2/bond.h
-
-/Users/ngoccuongnguyen/lammps/src/CLASS2/dihedral_class2.h
-dihedral.h
-/Users/ngoccuongnguyen/lammps/src/CLASS2/dihedral.h
-
-/Users/ngoccuongnguyen/lammps/src/CLASS2/improper_class2.h
-improper.h
-/Users/ngoccuongnguyen/lammps/src/CLASS2/improper.h
-
-/Users/ngoccuongnguyen/lammps/src/CLASS2/pair_lj_class2.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CLASS2/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CLASS2/pair_lj_class2_coul_cut.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CLASS2/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/CLASS2/pair_lj_class2_coul_long.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/CLASS2/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/COLLOID/fix_wall_colloid.h
-fix_wall.h
-/Users/ngoccuongnguyen/lammps/src/COLLOID/fix_wall.h
-
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_brownian.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_brownian_poly.h
-pair_brownian.h
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_brownian.h
-
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_colloid.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_lubricate.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_lubricateU.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_lubricateU_poly.h
-pair_lubricateU.h
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_lubricateU.h
-
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_lubricate_poly.h
-pair_lubricate.h
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_lubricate.h
-
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_yukawa_colloid.h
-pair_yukawa.h
-/Users/ngoccuongnguyen/lammps/src/COLLOID/pair_yukawa.h
-
-/Users/ngoccuongnguyen/lammps/src/COLVARS/fix_colvars.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/COLVARS/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/COLVARS/group_ndx.h
-command.h
-/Users/ngoccuongnguyen/lammps/src/COLVARS/command.h
-
-/Users/ngoccuongnguyen/lammps/src/COLVARS/ndx_group.h
-command.h
-/Users/ngoccuongnguyen/lammps/src/COLVARS/command.h
-vector
--
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_atom_gz.h
-dump_atom.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_atom.h
-gz_file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/gz_file_writer.h
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_atom_zstd.h
-dump_atom.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_atom.h
-zstd_file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/zstd_file_writer.h
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_cfg_gz.h
-dump_cfg.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_cfg.h
-gz_file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/gz_file_writer.h
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_cfg_zstd.h
-dump_cfg.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_cfg.h
-zstd_file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/zstd_file_writer.h
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_custom_gz.h
-dump_custom.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_custom.h
-gz_file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/gz_file_writer.h
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_custom_zstd.h
-dump_custom.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_custom.h
-zstd_file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/zstd_file_writer.h
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_local_gz.h
-dump_local.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_local.h
-gz_file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/gz_file_writer.h
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_local_zstd.h
-dump_local.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_local.h
-zstd_file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/zstd_file_writer.h
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_xyz_gz.h
-dump_xyz.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_xyz.h
-gz_file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/gz_file_writer.h
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_xyz_zstd.h
-dump_xyz.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/dump_xyz.h
-zstd_file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/zstd_file_writer.h
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/gz_file_writer.h
-file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/file_writer.h
-string
--
-zlib.h
--
-
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/zstd_file_writer.h
-file_writer.h
-/Users/ngoccuongnguyen/lammps/src/COMPRESS/file_writer.h
-string
--
-zstd.h
--
-
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/compute_temp_cs.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_born_coul_dsf_cs.h
-pair_born_coul_dsf.h
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_born_coul_dsf.h
-
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_born_coul_long_cs.h
-pair_born_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_born_coul_long.h
-
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_born_coul_wolf_cs.h
-pair_born_coul_wolf.h
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_born_coul_wolf.h
-
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_buck_coul_long_cs.h
-pair_buck_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_buck_coul_long.h
-
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_coul_long_cs.h
-pair_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_coul_long.h
-
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_coul_wolf_cs.h
-pair_coul_wolf.h
-/Users/ngoccuongnguyen/lammps/src/CORESHELL/pair_coul_wolf.h
-
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-/Users/ngoccuongnguyen/lammps/src/DPD-MESO/compute_edpd_temp_atom.h
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-/Users/ngoccuongnguyen/lammps/src/DPD-MESO/fix_mvv_dpd.h
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-/Users/ngoccuongnguyen/lammps/src/DPD-MESO/fix_mvv_edpd.h
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-/Users/ngoccuongnguyen/lammps/src/DPD-MESO/fix_mvv_tdpd.h
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-/Users/ngoccuongnguyen/lammps/src/DPD-MESO/fix_tdpd_source.h
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-/Users/ngoccuongnguyen/lammps/src/DPD-MESO/pair_edpd.h
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-/Users/ngoccuongnguyen/lammps/src/DPD-MESO/pair_mdpd.h
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-/Users/ngoccuongnguyen/lammps/src/DPD-MESO/pair_mdpd_rhosum.h
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-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/fix_eos_cv.h
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-
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-
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/fix_shardlow.h
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-random_external_state.h
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-
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-
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/pair_dpd_fdt_energy.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/pair_exp6_rx.h
-pair.h
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-
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/pair_multi_lucy.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/pair_multi_lucy_rx.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/pair_table_rx.h
-pair_table.h
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/pair_table.h
-
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/random_external_state.h
-accelerator_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/DPD-REACT/accelerator_kokkos.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/DPD-SMOOTH/fix_meso_move.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/DPD-SMOOTH/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/DPD-SMOOTH/fix_rigid_meso.h
-fix_rigid.h
-/Users/ngoccuongnguyen/lammps/src/DPD-SMOOTH/fix_rigid.h
-
-/Users/ngoccuongnguyen/lammps/src/DPD-SMOOTH/pair_sdpd_taitwater_isothermal.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/DPD-SMOOTH/pair.h
-zest.hpp
-/Users/ngoccuongnguyen/lammps/src/DPD-SMOOTH/zest.hpp
-random
--
-
-/Users/ngoccuongnguyen/lammps/src/DRUDE/compute_temp_drude.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/DRUDE/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix_drude.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix.h
-set
--
-
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix_drude_transform.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix_langevin_drude.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix_tgnh_drude.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix_tgnpt_drude.h
-fix_tgnh_drude.h
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix_tgnh_drude.h
-
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix_tgnvt_drude.h
-fix_tgnh_drude.h
-/Users/ngoccuongnguyen/lammps/src/DRUDE/fix_tgnh_drude.h
-
-/Users/ngoccuongnguyen/lammps/src/DRUDE/pair_coul_tt.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/DRUDE/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/DRUDE/pair_lj_cut_thole_long.h
-pair.h
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-
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-pair.h
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-
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-atom_vec.h
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-
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-compute.h
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-
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-
-/Users/ngoccuongnguyen/lammps/src/EFF/compute_temp_deform_eff.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/EFF/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/EFF/compute_temp_eff.h
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-
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-
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-
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-
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-
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-fix_nh_eff.h
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-
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-fix.h
-/Users/ngoccuongnguyen/lammps/src/EFF/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/EFF/fix_nvt_eff.h
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-/Users/ngoccuongnguyen/lammps/src/EFF/fix_nh_eff.h
-
-/Users/ngoccuongnguyen/lammps/src/EFF/fix_nvt_sllod_eff.h
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-
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-fix.h
-/Users/ngoccuongnguyen/lammps/src/EFF/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/EFF/pair_eff_cut.h
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-/Users/ngoccuongnguyen/lammps/src/EFF/pair.h
-
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-pointers.h
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/pointers.h
-
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/electrode_kspace.h
-lmptype.h
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/lmptype.h
-
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/ewald_electrode.h
-electrode_kspace.h
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/electrode_kspace.h
-ewald.h
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/ewald.h
-
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/fix_electrode_conp.h
-electrode_accel_interface.h
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/electrode_accel_interface.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/fix.h
-algorithm
--
-map
--
-unordered_map
--
-
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/fix_electrode_conq.h
-fix_electrode_conp.h
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/fix_electrode_conp.h
-
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/fix_electrode_thermo.h
-fix_electrode_conp.h
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/fix_electrode_conp.h
-
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/pppm_electrode.h
-electrode_kspace.h
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/electrode_kspace.h
-pppm.h
-/Users/ngoccuongnguyen/lammps/src/ELECTRODE/pppm.h
-
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute_ackland_atom.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute_adf.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute_ave_sphere_atom.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute_basal_atom.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute_born_matrix.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute_cnp_atom.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute_entropy_atom.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute_gyration_shape.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute_gyration_shape_chunk.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/EXTRA-COMPUTE/compute_hexorder_atom.h
-compute.h
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-
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-/Users/ngoccuongnguyen/lammps/src/EXTRA-DUMP/dump_dcd.h
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-/Users/ngoccuongnguyen/lammps/src/EXTRA-DUMP/dump_xtc.h
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-/Users/ngoccuongnguyen/lammps/src/EXTRA-DUMP/xdr_compat.h
-climits
--
-cstdio
--
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-improper.h
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-
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-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/error.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/force.h
-intel_buffers.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/intel_buffers.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/update.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_nh_intel.h
-fix_nh.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_nh.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_npt_intel.h
-fix_nh_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_nh_intel.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_nve_asphere_intel.h
-fix_nve.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_nve.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_nve_intel.h
-fix_nve.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_nve.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_nvt_intel.h
-fix_nh_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_nh_intel.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_nvt_sllod_intel.h
-fix_nh_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_nh_intel.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/improper_cvff_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-improper_cvff.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/improper_cvff.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/improper_harmonic_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-improper_harmonic.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/improper_harmonic.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/intel_buffers.h
-omp.h
--
-atom.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/atom.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/neighbor.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/neigh_list.h
-intel_preprocess.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/intel_preprocess.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/intel_preprocess.h
-sys/time.h
--
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_airebo_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair.h
-pair_airebo.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_airebo.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_airebo_morse_intel.h
-pair_airebo_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_airebo_intel.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_buck_coul_cut_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_buck_coul_cut.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_buck_coul_cut.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_buck_coul_long_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_buck_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_buck_coul_long.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_buck_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_buck.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_buck.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_dpd_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_dpd.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_dpd.h
-mkl_vsl.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/mkl_vsl.h
-random_mars.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/random_mars.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_eam_alloy_intel.h
-pair_eam_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_eam_intel.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_eam_fs_intel.h
-pair_eam_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_eam_intel.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_eam_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_eam.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_eam.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_gayberne_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_gayberne.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_gayberne.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_charmm_coul_charmm_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_lj_charmm_coul_charmm.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_charmm_coul_charmm.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_charmm_coul_long_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_lj_charmm_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_charmm_coul_long.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_cut_coul_long_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_lj_cut_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_cut_coul_long.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_cut_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_lj_cut.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_cut.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_long_coul_long_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_lj_long_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_lj_long_coul_long.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_rebo_intel.h
-pair_airebo_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_airebo_intel.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_sw_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair_sw.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_sw.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_tersoff_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair.h
-pair_tersoff.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pair_tersoff.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pppm_disp_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pppm_disp.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pppm_disp.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pppm_electrode_intel.h
-boundary_correction.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/boundary_correction.h
-electrode_kspace.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/electrode_kspace.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pppm.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pppm.h
-pppm_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pppm_intel.h
-algorithm
--
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/pppm_intel.h
-fix_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/fix_intel.h
-pppm.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pppm.h
-
-/Users/ngoccuongnguyen/lammps/src/INTEL/verlet_lrt_intel.h
-pppm_intel.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/pppm_intel.h
-verlet.h
-/Users/ngoccuongnguyen/lammps/src/INTEL/verlet.h
-thread
--
-pthread.h
--
-
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_coul_shield.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_drip.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_ilp_graphene_hbn.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_ilp_tmd.h
-pair_ilp_graphene_hbn.h
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_ilp_graphene_hbn.h
-
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_kolmogorov_crespi_full.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_kolmogorov_crespi_z.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_lebedeva_z.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_saip_metal.h
-pair_ilp_graphene_hbn.h
-/Users/ngoccuongnguyen/lammps/src/INTERLAYER/pair_ilp_graphene_hbn.h
-
-/Users/ngoccuongnguyen/lammps/src/KIM/fix_store_kim.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/KIM/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/KIM/kim_command.h
-command.h
-/Users/ngoccuongnguyen/lammps/src/KIM/command.h
-
-/Users/ngoccuongnguyen/lammps/src/KIM/pair_kim.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/KIM/pair.h
-KIM_SimulatorHeaders.h
-/Users/ngoccuongnguyen/lammps/src/KIM/KIM_SimulatorHeaders.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/angle_charmm_kokkos.h
-angle_charmm.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/angle_charmm.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/angle_class2_kokkos.h
-angle_class2.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/angle_class2.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/angle_cosine_kokkos.h
-angle_cosine.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/angle_cosine.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/angle_harmonic_kokkos.h
-angle_harmonic.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/angle_harmonic.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_angle_kokkos.h
-atom_vec_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_atomic_kokkos.h
-atom_vec_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_bond_kokkos.h
-atom_vec_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_charge_kokkos.h
-atom_vec_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_dpd_kokkos.h
-atom_vec_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_full_kokkos.h
-atom_vec_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_hybrid_kokkos.h
-atom_vec_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_kokkos.h
-atom_vec.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-type_traits
--
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_molecular_kokkos.h
-atom_vec_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_sphere_kokkos.h
-atom_vec_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_spin_kokkos.h
-atom_vec_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_vec_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/bond_class2_kokkos.h
-bond_class2.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/bond_class2.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/bond_fene_kokkos.h
-bond_fene.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/bond_fene.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/bond_harmonic_kokkos.h
-bond_harmonic.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/bond_harmonic.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_ave_sphere_atom_kokkos.h
-compute_ave_sphere_atom.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_ave_sphere_atom.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_coord_atom_kokkos.h
-compute_coord_atom.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_coord_atom.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_orientorder_atom_kokkos.h
-compute_orientorder_atom.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_orientorder_atom.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_temp_deform_kokkos.h
-compute_temp_deform.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_temp_deform.h
-kokkos_few.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_few.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_temp_kokkos.h
-compute_temp.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/compute_temp.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_charmm_kokkos.h
-dihedral_charmm.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_charmm.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_class2_kokkos.h
-dihedral_class2.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_class2.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_harmonic_kokkos.h
-dihedral_harmonic.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_harmonic.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_opls_kokkos.h
-dihedral_opls.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/dihedral_opls.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/dynamical_matrix_kokkos.h
-dynamical_matrix.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/dynamical_matrix.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fft3d_kokkos.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pointers.h
-remap_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/remap_kokkos.h
-fftdata_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fftdata_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fftdata_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-lmpfftsettings.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/lmpfftsettings.h
-mkl_dfti.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/mkl_dfti.h
-fftw3.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fftw3.h
-cufft.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/cufft.h
-hipfft.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/hipfft.h
-kissfft_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kissfft_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_acks2_reaxff_kokkos.h
-fix_acks2_reaxff.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_acks2_reaxff.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_deform_kokkos.h
-fix_deform.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_deform.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_dpd_energy_kokkos.h
-fix_dpd_energy.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_dpd_energy.h
-pair_dpd_fdt_energy_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_fdt_energy_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_enforce2d_kokkos.h
-fix_enforce2d.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_enforce2d.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_eos_table_rx_kokkos.h
-fix_eos_table_rx.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_eos_table_rx.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_freeze_kokkos.h
-fix_freeze.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_freeze.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_gravity_kokkos.h
-fix_gravity.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_gravity.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_langevin_kokkos.h
-fix_langevin.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_langevin.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-Kokkos_Random.hpp
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/Kokkos_Random.hpp
-comm_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/comm_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_minimize_kokkos.h
-fix_minimize.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_minimize.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_momentum_kokkos.h
-fix_momentum.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_momentum.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_neigh_history_kokkos.h
-fix_neigh_history.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_neigh_history.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nh_kokkos.h
-fix_nh.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nh.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nph_kokkos.h
-fix_nh_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nh_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_npt_kokkos.h
-fix_nh_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nh_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nve_kokkos.h
-fix_nve.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nve.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nve_sphere_kokkos.h
-fix_nve_sphere.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nve_sphere.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nvt_kokkos.h
-fix_nh_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nh_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nvt_sllod_kokkos.h
-fix_nh_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_nh_kokkos.h
-kokkos_few.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_few.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_property_atom_kokkos.h
-fix_property_atom.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_property_atom.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_qeq_reaxff_kokkos.h
-fix_qeq_reaxff.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_qeq_reaxff.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-kokkos_base.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_base.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_reaxff_bonds_kokkos.h
-fix_reaxff_bonds.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_reaxff_bonds.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_reaxff_species_kokkos.h
-fix_reaxff_species.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_reaxff_species.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_rx_kokkos.h
-fix_rx.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_rx.h
-pair_dpd_fdt_energy_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_fdt_energy_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_setforce_kokkos.h
-fix_setforce.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_setforce.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_shake_kokkos.h
-fix_shake.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_shake.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-kokkos_base.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_base.h
-Kokkos_UnorderedMap.hpp
--
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_shardlow_kokkos.h
-fix_shardlow.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_shardlow.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-pair_dpd_fdt_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_fdt_kokkos.h
-pair_dpd_fdt_energy_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_fdt_energy_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_wall_lj93_kokkos.h
-fix_wall_lj93.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_wall_lj93.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_wall_reflect_kokkos.h
-fix_wall_reflect.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fix_wall_reflect.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/gridcomm_kokkos.h
-gridcomm.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/gridcomm.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-fftdata_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fftdata_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/improper_class2_kokkos.h
-improper_class2.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/improper_class2.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/improper_harmonic_kokkos.h
-improper_harmonic.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/improper_harmonic.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kissfft_kokkos.h
-stdlib.h
--
-string.h
--
-math.h
--
-fftdata_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fftdata_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_base.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_base_fft.h
-fftdata_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fftdata_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_few.h
-Kokkos_Core.hpp
--
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pointers.h
-lmptype.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/lmptype.h
-Kokkos_Core.hpp
--
-Kokkos_DualView.hpp
--
-Kokkos_Timer.hpp
--
-Kokkos_Vectorization.hpp
--
-Kokkos_ScatterView.hpp
--
-Kokkos_UnorderedMap.hpp
--
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/min_cg_kokkos.h
-min_linesearch_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/min_linesearch_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/min_kokkos.h
-min.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/min.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/min_linesearch_kokkos.h
-min_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/min_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pointers.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_adp_kokkos.h
-kokkos_base.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_base.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_adp.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_adp.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_buck_coul_cut_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_buck_coul_cut.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_buck_coul_cut.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_buck_coul_long_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_buck_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_buck_coul_long.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_buck_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_buck.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_buck.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_cut_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_coul_cut.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_cut.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_debye_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_coul_debye.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_debye.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_dsf_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_coul_dsf.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_dsf.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_long_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_long.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_wolf_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_coul_wolf.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_coul_wolf.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_ext_kokkos.h
-pair_dpd_ext.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_ext.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-rand_pool_wrap_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/rand_pool_wrap_kokkos.h
-Kokkos_Random.hpp
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/Kokkos_Random.hpp
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_ext_tstat_kokkos.h
-pair_dpd_ext_tstat.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_ext_tstat.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-rand_pool_wrap_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/rand_pool_wrap_kokkos.h
-Kokkos_Random.hpp
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/Kokkos_Random.hpp
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_fdt_energy_kokkos.h
-pair_dpd_fdt_energy.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_fdt_energy.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-rand_pool_wrap_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/rand_pool_wrap_kokkos.h
-Kokkos_Random.hpp
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/Kokkos_Random.hpp
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd_kokkos.h
-pair_dpd.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_dpd.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-kokkos_type.h
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-/Users/ngoccuongnguyen/lammps/src/KOKKOS/Kokkos_ScatterView.hpp
-
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-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
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-
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-
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-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_class2_coul_long_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_lj_class2_coul_long.h
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-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_class2_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
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-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_cut_coul_cut_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_lj_cut_coul_cut.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_cut_coul_cut.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_cut_coul_debye_kokkos.h
-pair_kokkos.h
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-pair_lj_cut_coul_debye.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_cut_coul_debye.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_cut_coul_dsf_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_lj_cut_coul_dsf.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_cut_coul_dsf.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_cut_coul_long_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_lj_cut_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_cut_coul_long.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_cut_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_lj_cut.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_cut.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_expand_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_lj_expand.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_expand.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_gromacs_coul_gromacs_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_lj_gromacs_coul_gromacs.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_gromacs_coul_gromacs.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_gromacs_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_lj_gromacs.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_gromacs.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_sdk_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_lj_sdk.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_lj_sdk.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_morse_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_morse.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_morse.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_multi_lucy_rx_kokkos.h
-pair_multi_lucy_rx.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_multi_lucy_rx.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-kokkos_base.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_base.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_pace_kokkos.h
-pair_pace.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_pace.h
-ace_radial.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/ace_radial.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_reaxff_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_reaxff.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_reaxff.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-reaxff_inline.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/reaxff_inline.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_snap_kokkos.h
-pair_snap.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_snap.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-sna_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/sna_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_sw_kokkos.h
-pair_sw.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_sw.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_table_kokkos.h
-pair_table.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_table.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-atom_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/atom_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_table_rx_kokkos.h
-pair_table_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_table_kokkos.h
-kokkos_few.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_few.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_tersoff_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_tersoff.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_tersoff.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_tersoff_mod_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_tersoff_mod.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_tersoff_mod.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_tersoff_zbl_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_tersoff_zbl.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_tersoff_zbl.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_vashishta_kokkos.h
-pair_vashishta.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_vashishta.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_yukawa_kokkos.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-pair_yukawa.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_yukawa.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_zbl_kokkos.h
-pair_zbl.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_zbl.h
-pair_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pair_kokkos.h
-neigh_list_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/neigh_list_kokkos.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pppm_kokkos.h
-gridcomm_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/gridcomm_kokkos.h
-remap_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/remap_kokkos.h
-fft3d_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fft3d_kokkos.h
-kokkos_base_fft.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_base_fft.h
-fftdata_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fftdata_kokkos.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-kokkos_few.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_few.h
-pppm.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pppm.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/rand_pool_wrap_kokkos.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pointers.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-random_mars.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/random_mars.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/error.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/region_block_kokkos.h
-region_block.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/region_block.h
-kokkos_base.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_base.h
-kokkos_type.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/kokkos_type.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/remap_kokkos.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/pointers.h
-mpi.h
--
-fftdata_kokkos.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/fftdata_kokkos.h
-remap.h
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/remap.h
-
-/Users/ngoccuongnguyen/lammps/src/KOKKOS/sna_kokkos.h
-complex
--
-ctime
--
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--
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--
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-/Users/ngoccuongnguyen/lammps/src/KOKKOS/sna_kokkos_impl.h
-
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--
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--
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--
-type_traits
--
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-
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--
-
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--
-cstring
--
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--
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--
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--
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--
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--
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--
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--
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-/Users/ngoccuongnguyen/lammps/src/KSPACE/kissfft.h
-
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--
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--
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--
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--
-
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-
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--
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--
-cstring
--
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--
-alloca.h
--
-
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-cstring
--
-cmath
--
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--
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--
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-
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--
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--
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--
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--
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-
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-cmath
--
-cstring
--
-
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--
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--
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-
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--
-cstring
--
-
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--
-cstring
--
-
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-
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-cmath
--
-cstring
--
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-
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-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/KSPACE/pair_coul_streitz.h
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--
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--
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--
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--
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--
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--
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--
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--
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--
-cstring
--
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--
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--
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--
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--
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--
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-cmath
--
-cstring
--
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-cmath
--
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--
-cstring
--
-cmath
--
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-
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-
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-pppm_tip4p.h
-/Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_tip4p.h
-mpi.h
--
-cmath
--
-atom.h
-/Users/ngoccuongnguyen/lammps/src/KSPACE/atom.h
-domain.h
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-remap.h
-/Users/ngoccuongnguyen/lammps/src/KSPACE/remap.h
-cstdlib
--
-pack.h
-/Users/ngoccuongnguyen/lammps/src/KSPACE/pack.h
-
-/Users/ngoccuongnguyen/lammps/src/KSPACE/remap.h
-mpi.h
--
-lmpfftsettings.h
-/Users/ngoccuongnguyen/lammps/src/KSPACE/lmpfftsettings.h
-
-/Users/ngoccuongnguyen/lammps/src/KSPACE/remap_wrap.cpp
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-
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-
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/compute_smd_plastic_strain_rate.h
-compute.h
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-
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/compute_smd_tlsph_defgrad.h
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-
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-
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/compute_smd_triangle_vertices.h
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-compute.h
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-
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-fix.h
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-
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-fix.h
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix.h
-Eigen/Eigen
--
-
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix_smd_setvel.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix_smd_tlsph_reference_configuration.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix_smd_wall_surface.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair_smd_hertz.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair_smd_tlsph.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair.h
-Eigen/Eigen
--
-
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair_smd_triangulated_surface.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair.h
-Eigen/Eigen
--
-
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair_smd_ulsph.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MACHDYN/pair.h
-Eigen/Eigen
--
-
-/Users/ngoccuongnguyen/lammps/src/MANIFOLD/fix_manifoldforce.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MANIFOLD/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MANIFOLD/fix_nve_manifold_rattle.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MANIFOLD/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MANIFOLD/fix_nvt_manifold_rattle.h
-fix_nve_manifold_rattle.h
-/Users/ngoccuongnguyen/lammps/src/MANIFOLD/fix_nve_manifold_rattle.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/fix_qeq_comb.cpp
-fix_qeq_comb.h
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-atom.h
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-comm.h
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-error.h
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-group.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/group.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/memory.h
-neigh_list.h
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-respa.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/respa.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/update.h
-cmath
--
-cstring
--
-pair_comb.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb.h
-pair_comb3.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb3.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/fix_qeq_comb.h
-fix.h
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-
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-pair_adp.h
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-error.h
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-force.h
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-memory.h
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-neighbor.h
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-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neigh_list.h
-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_adp.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo.cpp
-pair_airebo.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo.h
-atom.h
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-math_special.h
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-memory.h
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-my_page.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/my_page.h
-neigh_list.h
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-neighbor.h
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-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-text_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/text_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo.h
-math_const.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/math_const.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo_morse.cpp
-pair_airebo_morse.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo_morse.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo_morse.h
-pair_airebo.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_atm.cpp
-pair_atm.h
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-atom.h
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-citeme.h
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-error.h
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_atm.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_bop.cpp
-pair_bop.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_bop.h
-atom.h
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-comm.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/comm.h
-domain.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/memory.h
-neigh_list.h
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neighbor.h
-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-tabular_function.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/tabular_function.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_bop.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
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-atom.h
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-error.h
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-group.h
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-math_const.h
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-math_special.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/memory.h
-my_page.h
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-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neigh_list.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neighbor.h
-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb3.cpp
-pair_comb3.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb3.h
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-comm.h
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-group.h
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-math_const.h
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-my_page.h
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-neigh_list.h
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-potential_file_reader.h
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-text_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/text_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb3.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam.cpp
-pair_eam.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/update.h
-cmath
--
-cstring
--
-
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-cstring
--
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-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_cd.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_alloy.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_fs.cpp
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-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_fs.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/update.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_he.h
-pair_eam_fs.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_fs.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip.cpp
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-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-exception
--
-limits
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip_multi.cpp
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-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-exception
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip_multi.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eim.cpp
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-tokenizer.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/tokenizer.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eim.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-map
--
-utility
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_extep.cpp
-pair_extep.h
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-neigh_list.h
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-neighbor.h
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-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-cctype
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_extep.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw.cpp
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-math_extra.h
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-neighbor.h
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-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
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-update.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/update.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw_zbl.h
-pair_gw.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_lcbop.cpp
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-error.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/error.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_lcbop.h
-math_const.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/math_const.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_local_density.cpp
-pair_local_density.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_local_density.h
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-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_local_density.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_spline.cpp
-pair_meam_spline.h
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-error.h
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-memory.h
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-neigh_list.h
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-neigh_request.h
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-neighbor.h
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-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_spline.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_sw_spline.cpp
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-neighbor.h
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-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_sw_spline.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_nb3b_harmonic.cpp
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-atom.h
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-error.h
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-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neigh_list.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neighbor.h
-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_nb3b_harmonic.h
-pair.h
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-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_polymorphic.cpp
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-atom.h
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-math_extra.h
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-memory.h
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-potential_file_reader.h
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-tabular_function.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/tabular_function.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_polymorphic.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
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-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_rebo.h
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-
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-atom.h
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-neigh_list.h
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-neighbor.h
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-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_angle_table.cpp
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_angle_table.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neighbor.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/table_file_reader.h
-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_angle_table.h
-pair_sw.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_mod.cpp
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/math_const.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_mod.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/suffix.h
-cmath
--
-cstring
--
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_mod.h
-pair_tersoff.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff.h
-cmath
--
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_mod_c.cpp
-pair_tersoff_mod_c.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_mod_c.h
-pair_tersoff_mod.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_mod.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_table.cpp
-pair_tersoff_table.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_table.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/atom.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/comm.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/error.h
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-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_table.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_zbl.cpp
-pair_tersoff_zbl.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_zbl.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/update.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_zbl.h
-pair_tersoff.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_threebody_table.cpp
-pair_threebody_table.h
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-atom.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/atom.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/memory.h
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neighbor.h
-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-table_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/table_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_threebody_table.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_vashishta.cpp
-pair_vashishta.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_vashishta.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/force.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/memory.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neighbor.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neigh_list.h
-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/potential_file_reader.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_vashishta.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_vashishta_table.cpp
-pair_vashishta_table.h
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_vashishta_table.h
-atom.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/neigh_list.h
-
-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_vashishta_table.h
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-/Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_vashishta.h
-
-/Users/ngoccuongnguyen/lammps/src/MC/fix_atom_swap.h
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-
-/Users/ngoccuongnguyen/lammps/src/MC/fix_bond_break.h
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-/Users/ngoccuongnguyen/lammps/src/MC/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MC/fix_bond_create.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MC/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MC/fix_bond_create_angle.h
-fix_bond_create.h
-/Users/ngoccuongnguyen/lammps/src/MC/fix_bond_create.h
-
-/Users/ngoccuongnguyen/lammps/src/MC/fix_bond_swap.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MC/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MC/fix_charge_regulation.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MC/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MC/fix_gcmc.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MC/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MC/fix_mol_swap.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MC/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MC/fix_tfmc.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MC/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MC/fix_widom.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MC/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MC/pair_dsmc.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MC/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MDI/fix_mdi_aimd.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MDI/fix.h
-mdi.h
--
-
-/Users/ngoccuongnguyen/lammps/src/MDI/fix_mdi_engine.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MDI/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MDI/mdi_command.h
-command.h
-/Users/ngoccuongnguyen/lammps/src/MDI/command.h
-mdi.h
-/Users/ngoccuongnguyen/lammps/src/MDI/mdi.h
-
-/Users/ngoccuongnguyen/lammps/src/MEAM/pair_meam.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MEAM/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MESONT/atom_vec_mesont.h
-atom_vec.h
-/Users/ngoccuongnguyen/lammps/src/MESONT/atom_vec.h
-
-/Users/ngoccuongnguyen/lammps/src/MESONT/compute_mesont.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/MESONT/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/MESONT/pair_mesocnt.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MESONT/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MESONT/pair_mesont_tpm.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MESONT/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MGPT/mgpt_linalg.h
-
-/Users/ngoccuongnguyen/lammps/src/MGPT/mgpt_readpot.h
-cstdio
--
-cstdlib
--
-cstring
--
-mgpt_splinetab.h
-/Users/ngoccuongnguyen/lammps/src/MGPT/mgpt_splinetab.h
-
-/Users/ngoccuongnguyen/lammps/src/MGPT/mgpt_splinetab.h
-
-/Users/ngoccuongnguyen/lammps/src/MGPT/pair_mgpt.h
-cassert
--
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MGPT/pair.h
-domain.h
-/Users/ngoccuongnguyen/lammps/src/MGPT/domain.h
-mgpt_readpot.h
-/Users/ngoccuongnguyen/lammps/src/MGPT/mgpt_readpot.h
-mgpt_linalg.h
-/Users/ngoccuongnguyen/lammps/src/MGPT/mgpt_linalg.h
-
-/Users/ngoccuongnguyen/lammps/src/MISC/bond_special.h
-bond.h
-/Users/ngoccuongnguyen/lammps/src/MISC/bond.h
-
-/Users/ngoccuongnguyen/lammps/src/MISC/compute_viscosity_cos.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/MISC/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/MISC/fix_accelerate_cos.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MISC/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MISC/fix_imd.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MISC/fix.h
-pthread.h
--
-
-/Users/ngoccuongnguyen/lammps/src/MISC/fix_ipi.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MISC/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MISC/fix_srp.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MISC/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/MISC/pair_agni.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MISC/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MISC/pair_list.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MISC/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MISC/pair_srp.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MISC/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MISC/pair_tracker.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MISC/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-HDNNP/pair_hdnnp.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/ML-HDNNP/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-IAP/compute_mliap.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/ML-IAP/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-IAP/pair_mliap.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/ML-IAP/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-PACE/pair_pace.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/ML-PACE/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-POD/compute_podfit.cpp
-compute_podfit.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/compute_podfit.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/atom.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/update.h
-modify.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/modify.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/neighbor.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/neigh_list.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/force.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/pair.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/comm.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/memory.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/error.h
-fstream
--
-sstream
--
-string
--
-vector
--
-iostream
--
-iomanip
--
-limits
--
-glob.h
--
-random
--
-algorithm
--
-math.h
--
-
-/Users/ngoccuongnguyen/lammps/src/ML-POD/compute_podfit.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/compute.h
-pod.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/pod.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-POD/pod.cpp
-pod.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/pod.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/error.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/memory.h
-fstream
--
-sstream
--
-string
--
-vector
--
-iostream
--
-iomanip
--
-limits
--
-glob.h
--
-random
--
-algorithm
--
-math.h
--
-
-/Users/ngoccuongnguyen/lammps/src/ML-POD/pod.h
-podcommon.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/podcommon.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/ML-POD/pointers.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-POD/podcommon.h
-fstream
--
-sstream
--
-iostream
--
-string
--
-
-/Users/ngoccuongnguyen/lammps/src/ML-QUIP/pair_quip.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/ML-QUIP/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-RANN/pair_rann.h
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-/Users/ngoccuongnguyen/lammps/src/ML-RANN/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_sna_atom.cpp
-compute_sna_atom.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_sna_atom.h
-sna.h
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-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/update.h
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-neighbor.h
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-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/neigh_list.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/force.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/pair.h
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-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/memory.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/error.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_sna_atom.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_snad_atom.cpp
-compute_snad_atom.h
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-sna.h
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-atom.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/update.h
-modify.h
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-neighbor.h
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-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/neigh_list.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/force.h
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-error.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/error.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_snad_atom.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_snap.cpp
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-atom.h
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-update.h
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-modify.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/modify.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/neighbor.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/neigh_list.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/force.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/pair.h
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-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/memory.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/error.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_snap.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_snav_atom.cpp
-compute_snav_atom.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_snav_atom.h
-sna.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/sna.h
-atom.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/update.h
-modify.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/modify.h
-neighbor.h
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-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/neigh_list.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/force.h
-comm.h
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-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/memory.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/error.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute_snav_atom.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/compute.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/pair_snap.cpp
-pair_snap.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/pair_snap.h
-atom.h
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-force.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/force.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/memory.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/neigh_list.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/neighbor.h
-sna.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/sna.h
-tokenizer.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/tokenizer.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/pair_snap.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/sna.cpp
-sna.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/sna.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/error.h
-math_const.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/math_const.h
-math_special.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/math_special.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/memory.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/sna.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/ML-SNAP/pointers.h
-
-/Users/ngoccuongnguyen/lammps/src/MOFFF/angle_class2_p6.h
-angle.h
-/Users/ngoccuongnguyen/lammps/src/MOFFF/angle.h
-
-/Users/ngoccuongnguyen/lammps/src/MOFFF/angle_cosine_buck6d.h
-angle.h
-/Users/ngoccuongnguyen/lammps/src/MOFFF/angle.h
-
-/Users/ngoccuongnguyen/lammps/src/MOFFF/improper_inversion_harmonic.h
-improper.h
-/Users/ngoccuongnguyen/lammps/src/MOFFF/improper.h
-
-/Users/ngoccuongnguyen/lammps/src/MOFFF/pair_buck6d_coul_gauss_dsf.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MOFFF/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MOFFF/pair_buck6d_coul_gauss_long.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MOFFF/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_charmm.cpp
-angle_charmm.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_charmm.h
-atom.h
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-/Users/ngoccuongnguyen/lammps/src/MOLECULE/error.h
-force.h
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-/Users/ngoccuongnguyen/lammps/src/MOLECULE/math_const.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/memory.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_charmm.h
-angle.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_cosine.cpp
-angle_cosine.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_cosine.h
-atom.h
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-comm.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/comm.h
-domain.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/domain.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/error.h
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-/Users/ngoccuongnguyen/lammps/src/MOLECULE/force.h
-math_const.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/math_const.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/memory.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_cosine.h
-angle.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_cosine_squared.cpp
-angle_cosine_squared.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_cosine_squared.h
-atom.h
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-comm.h
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-force.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/force.h
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_cosine_squared.h
-angle.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_harmonic.cpp
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-/Users/ngoccuongnguyen/lammps/src/MOLECULE/math_const.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/memory.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_harmonic.h
-angle.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_table.cpp
-angle_table.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_table.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/comm.h
-domain.h
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-error.h
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-force.h
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-math_const.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/math_const.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/memory.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-table_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/table_file_reader.h
-tokenizer.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/tokenizer.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle_table.h
-angle.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_angle.cpp
-atom_vec_angle.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_angle.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_angle.h
-atom_vec.h
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-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_bond.cpp
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-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_bond.h
-atom_vec.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_full.cpp
-atom_vec_full.h
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-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_full.h
-atom_vec.h
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-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_molecular.cpp
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-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_molecular.h
-atom_vec.h
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-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_template.cpp
-atom_vec_template.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_template.h
-atom.h
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-molecule.h
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-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_template.h
-atom_vec.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_fene.cpp
-bond_fene.h
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-atom.h
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-error.h
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-force.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/force.h
-math_const.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/math_const.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/memory.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/update.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_fene.h
-bond.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_fene_expand.cpp
-bond_fene_expand.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_fene_expand.h
-atom.h
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-comm.h
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-error.h
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-force.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/force.h
-math_const.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/memory.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/update.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_fene_expand.h
-bond.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_gromos.cpp
-bond_gromos.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_gromos.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/comm.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/memory.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_gromos.h
-bond.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_harmonic.cpp
-bond_harmonic.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_harmonic.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/force.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/memory.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_harmonic.h
-bond.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond.h
-
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-cstring
--
-
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-bond.h
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-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_quartic.h
-bond.h
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-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_table.cpp
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-/Users/ngoccuongnguyen/lammps/src/MOLECULE/tokenizer.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_table.h
-bond.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/update.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_charmm.h
-dihedral.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral.h
-
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-update.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/update.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_charmmfsw.h
-dihedral.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral.h
-
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_harmonic.h
-dihedral.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_multi_harmonic.cpp
-dihedral_multi_harmonic.h
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_multi_harmonic.h
-dihedral.h
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_opls.h
-dihedral.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral.h
-
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-table_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/table_file_reader.h
-tokenizer.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/tokenizer.h
-cmath
--
-cstring
--
-fstream
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral_table.h
-dihedral.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/dihedral.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/fix_cmap.cpp
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-update.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/update.h
-cmath
--
-cstring
--
-exception
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/fix_cmap.h
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-/Users/ngoccuongnguyen/lammps/src/MOLECULE/fix.h
-
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-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/improper_cvff.h
-improper.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/improper.h
-
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/improper_harmonic.h
-improper.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/improper.h
-
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/improper_umbrella.h
-improper.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/improper.h
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_hbond_dreiding_lj.h
-pair.h
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-
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_hbond_dreiding_morse.h
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-
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-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_lj_charmm_coul_charmm.h
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-
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-
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-
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-update.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/update.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp
-pair_lj_cut_tip4p_cut.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_lj_cut_tip4p_cut.h
-cmath
--
-cstring
--
-atom.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/force.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neigh_list.h
-domain.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/domain.h
-angle.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle.h
-bond.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/comm.h
-math_const.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/math_const.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/memory.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/error.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_lj_cut_tip4p_cut.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_tip4p_cut.cpp
-pair_tip4p_cut.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_tip4p_cut.h
-angle.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/angle.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/atom.h
-bond.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/bond.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/comm.h
-domain.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/domain.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/force.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/memory.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neigh_list.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair_tip4p_cut.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/MOLECULE/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLFILE/dump_molfile.h
-dump.h
-/Users/ngoccuongnguyen/lammps/src/MOLFILE/dump.h
-
-/Users/ngoccuongnguyen/lammps/src/MOLFILE/reader_molfile.h
-reader.h
-/Users/ngoccuongnguyen/lammps/src/MOLFILE/reader.h
-
-/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_atom_mpiio.h
-dump_atom.h
-/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_atom.h
-
-/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_cfg_mpiio.h
-dump_cfg.h
-/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_cfg.h
-
-/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_custom_mpiio.h
-dump_custom.h
-/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_custom.h
-
-/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_xyz_mpiio.h
-dump_xyz.h
-/Users/ngoccuongnguyen/lammps/src/MPIIO/dump_xyz.h
-
-/Users/ngoccuongnguyen/lammps/src/MSCG/fix_mscg.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/MSCG/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/NETCDF/dump_netcdf.h
-dump_custom.h
-/Users/ngoccuongnguyen/lammps/src/NETCDF/dump_custom.h
-
-/Users/ngoccuongnguyen/lammps/src/NETCDF/dump_netcdf_mpiio.h
-dump_custom.h
-/Users/ngoccuongnguyen/lammps/src/NETCDF/dump_custom.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_charmm_omp.h
-angle_charmm.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_charmm.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_class2_omp.h
-angle_class2.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_class2.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_delta_omp.h
-angle_cosine_delta.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_delta.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_omp.h
-angle_cosine.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_periodic_omp.h
-angle_cosine_periodic.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_periodic.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_shift_exp_omp.h
-angle_cosine_shift_exp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_shift_exp.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_shift_omp.h
-angle_cosine_shift.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_shift.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_squared_omp.h
-angle_cosine_squared.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_cosine_squared.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_dipole_omp.h
-angle_dipole.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_dipole.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_fourier_omp.h
-angle_fourier.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_fourier.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_fourier_simple_omp.h
-angle_fourier_simple.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_fourier_simple.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_harmonic_omp.h
-angle_harmonic.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_harmonic.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_quartic_omp.h
-angle_quartic.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_quartic.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_sdk_omp.h
-angle_sdk.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_sdk.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_table_omp.h
-angle_table.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/angle_table.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_class2_omp.h
-bond_class2.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_class2.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_fene_expand_omp.h
-bond_fene_expand.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_fene_expand.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_fene_omp.h
-bond_fene.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_fene.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_gromos_omp.h
-bond_gromos.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_gromos.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_harmonic_omp.h
-bond_harmonic.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_harmonic.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_harmonic_shift_cut_omp.h
-bond_harmonic_shift_cut.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_harmonic_shift_cut.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_harmonic_shift_omp.h
-bond_harmonic_shift.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_harmonic_shift.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_morse_omp.h
-bond_morse.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_morse.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_nonlinear_omp.h
-bond_nonlinear.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_nonlinear.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_quartic_omp.h
-bond_quartic.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_quartic.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_table_omp.h
-bond_table.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/bond_table.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_charmm_omp.h
-dihedral_charmm.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_charmm.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_class2_omp.h
-dihedral_class2.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_class2.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_cosine_shift_exp_omp.h
-dihedral_cosine_shift_exp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_cosine_shift_exp.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_fourier_omp.h
-dihedral_fourier.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_fourier.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_harmonic_omp.h
-dihedral_harmonic.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_harmonic.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_helix_omp.h
-dihedral_helix.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_helix.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_multi_harmonic_omp.h
-dihedral_multi_harmonic.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_multi_harmonic.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_nharmonic_omp.h
-dihedral_nharmonic.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_nharmonic.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_opls_omp.h
-dihedral_opls.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_opls.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_quadratic_omp.h
-dihedral_quadratic.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_quadratic.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_table_omp.h
-dihedral_table.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/dihedral_table.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/ewald_omp.h
-ewald.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/ewald.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_gravity_omp.h
-fix_gravity.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_gravity.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_neigh_history_omp.h
-fix_neigh_history.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_neigh_history.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_asphere_omp.h
-fix_nh_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_omp.h
-fix_nh.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_sphere_omp.h
-fix_nh_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nph_asphere_omp.h
-fix_nh_asphere_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_asphere_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nph_omp.h
-fix_nh_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nph_sphere_omp.h
-fix_nh_sphere_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_sphere_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_npt_asphere_omp.h
-fix_nh_asphere_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_asphere_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_npt_omp.h
-fix_nh_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_npt_sphere_omp.h
-fix_nh_sphere_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_sphere_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nve_omp.h
-fix_nve.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nve.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nve_sphere_omp.h
-fix_nve_sphere.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nve_sphere.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nvt_asphere_omp.h
-fix_nh_asphere_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_asphere_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nvt_omp.h
-fix_nh_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nvt_sllod_omp.h
-fix_nh_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nvt_sphere_omp.h
-fix_nh_sphere_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_nh_sphere_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_omp.h
-fix.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_qeq_comb_omp.h
-fix_qeq_comb.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_qeq_comb.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_qeq_reaxff_omp.h
-fix_qeq_reaxff.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_qeq_reaxff.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nh_omp.h
-fix_rigid_nh.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nh.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nph_omp.h
-fix_rigid_nh_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nh_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_npt_omp.h
-fix_rigid_nh_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nh_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nve_omp.h
-fix_rigid_nh_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nh_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nvt_omp.h
-fix_rigid_nh_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_nh_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_omp.h
-fix_rigid.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_small_omp.h
-fix_rigid_small.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_rigid_small.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/force.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/improper_class2_omp.h
-improper_class2.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/improper_class2.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/improper_cossq_omp.h
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-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_long_soft_omp.h
-pair_lj_cut_coul_long_soft.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_long_soft.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_msm_omp.h
-pair_lj_cut_coul_msm.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_msm.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_wolf_omp.h
-pair_lj_cut_coul_wolf.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_coul_wolf.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_dipole_cut_omp.h
-pair_lj_cut_dipole_cut.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_dipole_cut.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_omp.h
-pair_lj_cut.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_soft_omp.h
-pair_lj_cut_soft.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_soft.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_thole_long_omp.h
-pair_lj_cut_thole_long.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_thole_long.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_tip4p_cut_omp.h
-pair_lj_cut_tip4p_cut.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_tip4p_cut.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_tip4p_long_omp.h
-pair_lj_cut_tip4p_long.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_tip4p_long.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_tip4p_long_soft_omp.h
-pair_lj_cut_tip4p_long_soft.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_cut_tip4p_long_soft.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_expand_omp.h
-pair_lj_expand.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_expand.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_gromacs_coul_gromacs_omp.h
-pair_lj_gromacs_coul_gromacs.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_gromacs_coul_gromacs.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_gromacs_omp.h
-pair_lj_gromacs.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_gromacs.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_long_coul_long_omp.h
-pair_lj_long_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_long_coul_long.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_long_tip4p_long_omp.h
-pair_lj_long_tip4p_long.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_long_tip4p_long.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_relres_omp.h
-pair_lj_relres.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_relres.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sdk_coul_long_omp.h
-pair_lj_sdk_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sdk_coul_long.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sdk_coul_msm_omp.h
-pair_lj_sdk_coul_msm.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sdk_coul_msm.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sdk_omp.h
-pair_lj_sdk.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sdk.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sf_dipole_sf_omp.h
-pair_lj_sf_dipole_sf.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_sf_dipole_sf.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_smooth_linear_omp.h
-pair_lj_smooth_linear.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_smooth_linear.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_smooth_omp.h
-pair_lj_smooth.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lj_smooth.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lubricate_omp.h
-pair_lubricate.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lubricate.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lubricate_poly_omp.h
-pair_lubricate_poly.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_lubricate_poly.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_meam_spline_omp.h
-pair_meam_spline.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_meam_spline.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_morse_omp.h
-pair_morse.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_morse.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_morse_smooth_linear_omp.h
-pair_morse_smooth_linear.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_morse_smooth_linear.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_nm_cut_coul_cut_omp.h
-pair_nm_cut_coul_cut.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_nm_cut_coul_cut.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_nm_cut_coul_long_omp.h
-pair_nm_cut_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_nm_cut_coul_long.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_nm_cut_omp.h
-pair_nm_cut.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_nm_cut.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_peri_lps_omp.h
-pair_peri_lps.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_peri_lps.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_peri_pmb_omp.h
-pair_peri_pmb.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_peri_pmb.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_reaxff_omp.h
-pair_reaxff.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_reaxff.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_rebo_omp.h
-pair_airebo_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_airebo_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_resquared_omp.h
-pair_resquared.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_resquared.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_soft_omp.h
-pair_soft.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_soft.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_sw_mod_omp.h
-pair_sw_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_sw_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_sw_omp.h
-pair_sw.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_sw.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_table_omp.h
-pair_table.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_table.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_mod_c_omp.h
-pair_tersoff_mod_c.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_mod_c.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_mod_omp.h
-pair_tersoff_mod.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_mod.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_omp.h
-pair_tersoff.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_table_omp.h
-pair_tersoff_table.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_table.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_zbl_omp.h
-pair_tersoff_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tersoff_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tip4p_cut_omp.h
-pair_tip4p_cut.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tip4p_cut.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tip4p_long_omp.h
-pair_tip4p_long.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tip4p_long.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tip4p_long_soft_omp.h
-pair_tip4p_long_soft.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_tip4p_long_soft.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_ufm_omp.h
-pair_ufm.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_ufm.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_vashishta_omp.h
-pair_vashishta.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_vashishta.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_vashishta_table_omp.h
-pair_vashishta_table.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_vashishta_table.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_yukawa_colloid_omp.h
-pair_yukawa_colloid.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_yukawa_colloid.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_yukawa_omp.h
-pair_yukawa.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_yukawa.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_zbl_omp.h
-pair_zbl.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pair_zbl.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_cg_omp.h
-pppm_cg.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_cg.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_disp_omp.h
-pppm_disp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_disp.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_disp_tip4p_omp.h
-pppm_disp_tip4p.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_disp_tip4p.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_omp.h
-pppm.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_tip4p_omp.h
-pppm_tip4p.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pppm_tip4p.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/respa_omp.h
-respa.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/respa.h
-thr_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_data.h
-timer.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/timer.h
-
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_omp.h
-omp.h
--
-error.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/error.h
-fix_omp.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/fix_omp.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/pointers.h
-thr_data.h
-/Users/ngoccuongnguyen/lammps/src/OPENMP/thr_data.h
-
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_eam_alloy_opt.h
-pair_eam_alloy.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_eam_alloy.h
-pair_eam_opt.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_eam_opt.h
-
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_eam_fs_opt.h
-pair_eam_fs.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_eam_fs.h
-pair_eam_opt.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_eam_opt.h
-
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_eam_opt.h
-pair_eam.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_eam.h
-
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_ilp_graphene_hbn_opt.h
-pair_ilp_graphene_hbn.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_ilp_graphene_hbn.h
-
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_ilp_tmd_opt.h
-pair_ilp_graphene_hbn_opt.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_ilp_graphene_hbn_opt.h
-pair_ilp_tmd.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_ilp_tmd.h
-
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_charmm_coul_long_opt.h
-pair_lj_charmm_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_charmm_coul_long.h
-
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_cut_coul_long_opt.h
-pair_lj_cut_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_cut_coul_long.h
-
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_cut_opt.h
-pair_lj_cut.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_cut.h
-
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_cut_tip4p_long_opt.h
-pair_lj_cut_tip4p_long.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_cut_tip4p_long.h
-
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_long_coul_long_opt.h
-pair_lj_long_coul_long.h
-/Users/ngoccuongnguyen/lammps/src/OPT/pair_lj_long_coul_long.h
-
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--
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--
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--
-Python.h
--
-
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--
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--
-Python.h
--
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--
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--
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--
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--
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--
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--
-atom.h
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-cmath
--
-cstring
--
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-cmath
--
-cstring
--
-
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--
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--
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--
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--
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--
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--
-cstring
--
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--
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--
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--
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--
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-algorithm
--
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--
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-cmath
--
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--
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--
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--
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--
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-/Users/ngoccuongnguyen/lammps/src/pointers.h
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--
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-tokenizer.h
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-algorithm
--
-cstring
--
-
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-atom_vec.h
-/Users/ngoccuongnguyen/lammps/src/atom_vec.h
-
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-/Users/ngoccuongnguyen/lammps/src/modify.h
-cmath
--
-
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-atom_vec.h
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-
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-atom_vec.h
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-
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-modify.h
-/Users/ngoccuongnguyen/lammps/src/modify.h
-cmath
--
-
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-atom_vec.h
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-/Users/ngoccuongnguyen/lammps/src/rcb.h
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-/Users/ngoccuongnguyen/lammps/src/error.h
-cmath
--
-cstring
--
-
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-command.h
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-
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-cctype
--
-cstring
--
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-cstring
--
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-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/change_box.h
-command.h
-/Users/ngoccuongnguyen/lammps/src/command.h
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-/Users/ngoccuongnguyen/lammps/src/citeme.cpp
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-universe.h
-/Users/ngoccuongnguyen/lammps/src/universe.h
-functional
--
-
-/Users/ngoccuongnguyen/lammps/src/citeme.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-set
--
-
-/Users/ngoccuongnguyen/lammps/src/comm.cpp
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
-omp.h
--
-
-/Users/ngoccuongnguyen/lammps/src/comm.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-
-/Users/ngoccuongnguyen/lammps/src/comm_brick.cpp
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-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/comm_brick.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-
-/Users/ngoccuongnguyen/lammps/src/comm_tiled.cpp
-comm_tiled.h
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-/Users/ngoccuongnguyen/lammps/src/pair.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/comm_tiled.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-
-/Users/ngoccuongnguyen/lammps/src/command.h
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-modify.h
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-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/compute.h
-pointers.h
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-/Users/ngoccuongnguyen/lammps/src/compute_aggregate_atom.cpp
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-pair.h
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-cmath
--
-cstring
--
-
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-compute.h
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-
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-/Users/ngoccuongnguyen/lammps/src/compute_angle_local.h
-cmath
--
-cstring
--
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/compute_angmom_chunk.h
-compute.h
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-
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-
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-compute_bond_local.h
-/Users/ngoccuongnguyen/lammps/src/compute_bond_local.h
-cmath
--
-cstring
--
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-atom_vec.h
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-pair.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
-
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-compute.h
-/Users/ngoccuongnguyen/lammps/src/compute.h
-
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-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
-
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-compute.h
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-
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-compute_chunk_atom.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-variable.h
-/Users/ngoccuongnguyen/lammps/src/variable.h
-cmath
--
-cstring
--
-map
--
-utility
--
-
-/Users/ngoccuongnguyen/lammps/src/compute_chunk_atom.h
-compute.h
-/Users/ngoccuongnguyen/lammps/src/compute.h
-map
--
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-cmath
--
-cstring
--
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-cmath
--
-cstring
--
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--
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--
-utility
--
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-cctype
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/dihedral_hybrid.h
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--
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-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/displace_atoms.h
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-/Users/ngoccuongnguyen/lammps/src/universe.h
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-cstring
--
-cmath
--
-style_region.h
-/Users/ngoccuongnguyen/lammps/src/style_region.h
-
-/Users/ngoccuongnguyen/lammps/src/domain.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-cmath
--
-map
--
-unordered_set
--
-vector
--
-
-/Users/ngoccuongnguyen/lammps/src/dump.cpp
-dump.h
-/Users/ngoccuongnguyen/lammps/src/dump.h
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-cstring
--
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-/Users/ngoccuongnguyen/lammps/src/dump.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-map
--
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-/Users/ngoccuongnguyen/lammps/src/dump_atom.cpp
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-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
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-/Users/ngoccuongnguyen/lammps/src/dump.h
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-/Users/ngoccuongnguyen/lammps/src/error.h
-cstring
--
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-dump_custom.h
-/Users/ngoccuongnguyen/lammps/src/dump_custom.h
-
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-variable.h
-/Users/ngoccuongnguyen/lammps/src/variable.h
-cstring
--
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-/Users/ngoccuongnguyen/lammps/src/dump_custom.h
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-cmath
--
-cctype
--
-cstring
--
-
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--
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-
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--
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--
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-
-/Users/ngoccuongnguyen/lammps/src/exceptions.h
-exception
--
-mpi.h
--
-string
--
-
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-string
--
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-cmath
--
-cstring
--
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-/Users/ngoccuongnguyen/lammps/src/memory.h
-cstring
--
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-pointers.h
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-/Users/ngoccuongnguyen/lammps/src/variable.h
-cstring
--
-
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-
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-cstring
--
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-
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--
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--
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--
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--
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--
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--
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--
-cstring
--
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-variable.h
-/Users/ngoccuongnguyen/lammps/src/variable.h
-cstring
--
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-cmath
--
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--
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-cmath
--
-cstring
--
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-cstring
--
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-cstring
--
-
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-cstring
--
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-
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-cmath
--
-cstring
--
-
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-fix.h
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-cmath
--
-cstring
--
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-cstring
--
-atom.h
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-/Users/ngoccuongnguyen/lammps/src/pair.h
-utility
--
-
-/Users/ngoccuongnguyen/lammps/src/fix_update_special_bonds.h
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-/Users/ngoccuongnguyen/lammps/src/fix.h
-utility
--
-vector
--
-
-/Users/ngoccuongnguyen/lammps/src/fix_vector.cpp
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-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
-
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-
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-variable.h
-/Users/ngoccuongnguyen/lammps/src/variable.h
-cstring
--
-
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-
-/Users/ngoccuongnguyen/lammps/src/fix_wall_harmonic.cpp
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-
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-fix_wall_lj1043.h
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-cmath
--
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-math_const.h
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-
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-
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-fix_wall_lj126.h
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-cmath
--
-atom.h
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-
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-cmath
--
-atom.h
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-
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--
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--
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--
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-io.h
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--
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--
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--
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--
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--
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--
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--
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--
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--
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--
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--
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--
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-
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--
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--
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--
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--
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--
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--
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--
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--
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--
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--
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--
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--
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--
-utility
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--
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--
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--
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--
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--
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--
-functional
--
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--
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--
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--
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--
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--
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--
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--
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--
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--
-
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--
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--
-
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-/Users/ngoccuongnguyen/lammps/src/pointers.h
-
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--
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-
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-output.h
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-timer.h
-/Users/ngoccuongnguyen/lammps/src/timer.h
-universe.h
-/Users/ngoccuongnguyen/lammps/src/universe.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/min_fire.h
-min.h
-/Users/ngoccuongnguyen/lammps/src/min.h
-
-/Users/ngoccuongnguyen/lammps/src/min_fire_old.cpp
-min_fire_old.h
-/Users/ngoccuongnguyen/lammps/src/min_fire_old.h
-atom.h
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-output.h
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-timer.h
-/Users/ngoccuongnguyen/lammps/src/timer.h
-universe.h
-/Users/ngoccuongnguyen/lammps/src/universe.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/min_fire_old.h
-min.h
-/Users/ngoccuongnguyen/lammps/src/min.h
-
-/Users/ngoccuongnguyen/lammps/src/min_hftn.cpp
-min_hftn.h
-/Users/ngoccuongnguyen/lammps/src/min_hftn.h
-atom.h
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-/Users/ngoccuongnguyen/lammps/src/fix_minimize.h
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-/Users/ngoccuongnguyen/lammps/src/modify.h
-output.h
-/Users/ngoccuongnguyen/lammps/src/output.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-timer.h
-/Users/ngoccuongnguyen/lammps/src/timer.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/min_hftn.h
-min.h
-/Users/ngoccuongnguyen/lammps/src/min.h
-
-/Users/ngoccuongnguyen/lammps/src/min_linesearch.cpp
-min_linesearch.h
-/Users/ngoccuongnguyen/lammps/src/min_linesearch.h
-atom.h
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-/Users/ngoccuongnguyen/lammps/src/modify.h
-output.h
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-/Users/ngoccuongnguyen/lammps/src/pair.h
-thermo.h
-/Users/ngoccuongnguyen/lammps/src/thermo.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/min_linesearch.h
-min.h
-/Users/ngoccuongnguyen/lammps/src/min.h
-
-/Users/ngoccuongnguyen/lammps/src/min_quickmin.cpp
-min_quickmin.h
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-output.h
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-timer.h
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-universe.h
-/Users/ngoccuongnguyen/lammps/src/universe.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/min_quickmin.h
-min.h
-/Users/ngoccuongnguyen/lammps/src/min.h
-
-/Users/ngoccuongnguyen/lammps/src/min_sd.cpp
-min_sd.h
-/Users/ngoccuongnguyen/lammps/src/min_sd.h
-error.h
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-output.h
-/Users/ngoccuongnguyen/lammps/src/output.h
-timer.h
-/Users/ngoccuongnguyen/lammps/src/timer.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/min_sd.h
-min_linesearch.h
-/Users/ngoccuongnguyen/lammps/src/min_linesearch.h
-
-/Users/ngoccuongnguyen/lammps/src/minimize.cpp
-minimize.h
-/Users/ngoccuongnguyen/lammps/src/minimize.h
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-finish.h
-/Users/ngoccuongnguyen/lammps/src/finish.h
-min.h
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-timer.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-
-/Users/ngoccuongnguyen/lammps/src/minimize.h
-command.h
-/Users/ngoccuongnguyen/lammps/src/command.h
-
-/Users/ngoccuongnguyen/lammps/src/modify.cpp
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-style_fix.h
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-atom.h
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-group.h
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-input.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-region.h
-/Users/ngoccuongnguyen/lammps/src/region.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-variable.h
-/Users/ngoccuongnguyen/lammps/src/variable.h
-cstring
--
-style_fix.h
-/Users/ngoccuongnguyen/lammps/src/style_fix.h
-style_compute.h
-/Users/ngoccuongnguyen/lammps/src/style_compute.h
-
-/Users/ngoccuongnguyen/lammps/src/modify.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-map
--
-vector
--
-
-/Users/ngoccuongnguyen/lammps/src/molecule.cpp
-molecule.h
-/Users/ngoccuongnguyen/lammps/src/molecule.h
-atom.h
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-atom_vec.h
-/Users/ngoccuongnguyen/lammps/src/atom_vec.h
-atom_vec_body.h
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-comm.h
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-error.h
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-force.h
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-math_extra.h
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-math_eigen.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-tokenizer.h
-/Users/ngoccuongnguyen/lammps/src/tokenizer.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/molecule.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-
-/Users/ngoccuongnguyen/lammps/src/mpiio.h
-restart_mpiio.h
-/Users/ngoccuongnguyen/lammps/src/restart_mpiio.h
-
-/Users/ngoccuongnguyen/lammps/src/my_page.cpp
-my_page.h
-/Users/ngoccuongnguyen/lammps/src/my_page.h
-
-/Users/ngoccuongnguyen/lammps/src/my_page.h
-lmptype.h
-/Users/ngoccuongnguyen/lammps/src/lmptype.h
-
-/Users/ngoccuongnguyen/lammps/src/my_pool_chunk.cpp
-my_pool_chunk.h
-/Users/ngoccuongnguyen/lammps/src/my_pool_chunk.h
-cstdlib
--
-
-/Users/ngoccuongnguyen/lammps/src/my_pool_chunk.h
-
-/Users/ngoccuongnguyen/lammps/src/nbin.cpp
-nbin.h
-/Users/ngoccuongnguyen/lammps/src/nbin.h
-cmath
--
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-neigh_request.h
-/Users/ngoccuongnguyen/lammps/src/neigh_request.h
-domain.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-error.h
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-
-/Users/ngoccuongnguyen/lammps/src/nbin.h
-pointers.h
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-
-/Users/ngoccuongnguyen/lammps/src/nbin_multi.cpp
-nbin_multi.h
-/Users/ngoccuongnguyen/lammps/src/nbin_multi.h
-neighbor.h
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-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-group.h
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-domain.h
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-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/nbin_multi.h
-nbin.h
-/Users/ngoccuongnguyen/lammps/src/nbin.h
-
-/Users/ngoccuongnguyen/lammps/src/nbin_standard.cpp
-nbin_standard.h
-/Users/ngoccuongnguyen/lammps/src/nbin_standard.h
-neighbor.h
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-group.h
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-comm.h
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-
-/Users/ngoccuongnguyen/lammps/src/nbin_standard.h
-nbin.h
-/Users/ngoccuongnguyen/lammps/src/nbin.h
-
-/Users/ngoccuongnguyen/lammps/src/neigh_list.cpp
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
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-/Users/ngoccuongnguyen/lammps/src/my_page.h
-atom.h
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-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-neighbor.h
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-neigh_request.h
-/Users/ngoccuongnguyen/lammps/src/neigh_request.h
-my_page.h
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-memory.h
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-
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-pointers.h
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-
-/Users/ngoccuongnguyen/lammps/src/neigh_request.cpp
-neigh_request.h
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-atom.h
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-memory.h
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-neighbor.h
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-
-/Users/ngoccuongnguyen/lammps/src/neigh_request.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-
-/Users/ngoccuongnguyen/lammps/src/neighbor.cpp
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-accelerator_kokkos.h
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-atom.h
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-atom_vec.h
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-bond.h
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-citeme.h
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-comm.h
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-compute.h
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-domain.h
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-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-fix.h
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-force.h
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-group.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-modify.h
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-nbin.h
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-neigh_list.h
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-neigh_request.h
-/Users/ngoccuongnguyen/lammps/src/neigh_request.h
-npair.h
-/Users/ngoccuongnguyen/lammps/src/npair.h
-nstencil.h
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-ntopo.h
-/Users/ngoccuongnguyen/lammps/src/ntopo.h
-output.h
-/Users/ngoccuongnguyen/lammps/src/output.h
-pair.h
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-pair_hybrid.h
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-respa.h
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-style_nbin.h
-/Users/ngoccuongnguyen/lammps/src/style_nbin.h
-style_npair.h
-/Users/ngoccuongnguyen/lammps/src/style_npair.h
-style_nstencil.h
-/Users/ngoccuongnguyen/lammps/src/style_nstencil.h
-style_ntopo.h
-/Users/ngoccuongnguyen/lammps/src/style_ntopo.h
-suffix.h
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-tokenizer.h
-/Users/ngoccuongnguyen/lammps/src/tokenizer.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cmath
--
-cstring
--
-style_nbin.h
-/Users/ngoccuongnguyen/lammps/src/style_nbin.h
-style_nbin.h
-/Users/ngoccuongnguyen/lammps/src/style_nbin.h
-style_nstencil.h
-/Users/ngoccuongnguyen/lammps/src/style_nstencil.h
-style_nstencil.h
-/Users/ngoccuongnguyen/lammps/src/style_nstencil.h
-style_npair.h
-/Users/ngoccuongnguyen/lammps/src/style_npair.h
-style_npair.h
-/Users/ngoccuongnguyen/lammps/src/style_npair.h
-
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-
-/Users/ngoccuongnguyen/lammps/src/npair.cpp
-npair.h
-/Users/ngoccuongnguyen/lammps/src/npair.h
-cmath
--
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-neigh_request.h
-/Users/ngoccuongnguyen/lammps/src/neigh_request.h
-nbin.h
-/Users/ngoccuongnguyen/lammps/src/nbin.h
-nstencil.h
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-atom.h
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-update.h
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-memory.h
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-error.h
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-
-/Users/ngoccuongnguyen/lammps/src/npair.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-
-/Users/ngoccuongnguyen/lammps/src/npair_copy.cpp
-npair_copy.h
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-neigh_list.h
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-
-/Users/ngoccuongnguyen/lammps/src/npair_copy.h
-npair.h
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-
-/Users/ngoccuongnguyen/lammps/src/npair_full_bin.cpp
-npair_full_bin.h
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-neigh_list.h
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-atom_vec.h
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-molecule.h
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-
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-npair.h
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-
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-npair_full_bin_atomonly.h
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-atom.h
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-
-/Users/ngoccuongnguyen/lammps/src/npair_full_bin_atomonly.h
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-
-/Users/ngoccuongnguyen/lammps/src/npair_full_bin_ghost.cpp
-npair_full_bin_ghost.h
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-
-/Users/ngoccuongnguyen/lammps/src/npair_full_bin_ghost.h
-npair.h
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-
-/Users/ngoccuongnguyen/lammps/src/npair_full_multi.cpp
-npair_full_multi.h
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-molecule.h
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-
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-domain.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-cmath
--
-
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-
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-
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-
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-
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-
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-nstencil.h
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-
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-
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-atom.h
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-
-/Users/ngoccuongnguyen/lammps/src/nstencil_full_multi_old_2d.h
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-
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-cmath
--
-cstring
--
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-
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-map
--
-
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-
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-/Users/ngoccuongnguyen/lammps/src/math_const.h
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-neighbor.h
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-suffix.h
-/Users/ngoccuongnguyen/lammps/src/suffix.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cfloat
--
-climits
--
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_born.cpp
-pair_born.h
-/Users/ngoccuongnguyen/lammps/src/pair_born.h
-cmath
--
-cstring
--
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
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-/Users/ngoccuongnguyen/lammps/src/comm.h
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-error.h
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-
-/Users/ngoccuongnguyen/lammps/src/pair_born.h
-pair.h
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-
-/Users/ngoccuongnguyen/lammps/src/pair_buck.cpp
-pair_buck.h
-/Users/ngoccuongnguyen/lammps/src/pair_buck.h
-cmath
--
-cstring
--
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
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-/Users/ngoccuongnguyen/lammps/src/comm.h
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-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_buck.h
-pair.h
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-
-/Users/ngoccuongnguyen/lammps/src/pair_buck_coul_cut.cpp
-pair_buck_coul_cut.h
-/Users/ngoccuongnguyen/lammps/src/pair_buck_coul_cut.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
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-/Users/ngoccuongnguyen/lammps/src/math_const.h
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-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_buck_coul_cut.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_coul_cut.cpp
-pair_coul_cut.h
-/Users/ngoccuongnguyen/lammps/src/pair_coul_cut.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
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-force.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_coul_cut.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_coul_debye.cpp
-pair_coul_debye.h
-/Users/ngoccuongnguyen/lammps/src/pair_coul_debye.h
-cmath
--
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-force.h
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-neigh_list.h
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-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_coul_debye.h
-pair_coul_cut.h
-/Users/ngoccuongnguyen/lammps/src/pair_coul_cut.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_coul_dsf.cpp
-pair_coul_dsf.h
-/Users/ngoccuongnguyen/lammps/src/pair_coul_dsf.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-math_const.h
-/Users/ngoccuongnguyen/lammps/src/math_const.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_coul_dsf.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_coul_wolf.cpp
-pair_coul_wolf.h
-/Users/ngoccuongnguyen/lammps/src/pair_coul_wolf.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-math_const.h
-/Users/ngoccuongnguyen/lammps/src/math_const.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_coul_wolf.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_deprecated.cpp
-pair_deprecated.h
-/Users/ngoccuongnguyen/lammps/src/pair_deprecated.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-pair_hybrid.h
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_deprecated.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid.cpp
-pair_hybrid.h
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-neigh_request.h
-/Users/ngoccuongnguyen/lammps/src/neigh_request.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-respa.h
-/Users/ngoccuongnguyen/lammps/src/respa.h
-suffix.h
-/Users/ngoccuongnguyen/lammps/src/suffix.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid_overlay.cpp
-pair_hybrid_overlay.h
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid_overlay.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid_overlay.h
-pair_hybrid.h
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid_scaled.cpp
-pair_hybrid_scaled.h
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid_scaled.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-atom_vec.h
-/Users/ngoccuongnguyen/lammps/src/atom_vec.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-input.h
-/Users/ngoccuongnguyen/lammps/src/input.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-respa.h
-/Users/ngoccuongnguyen/lammps/src/respa.h
-suffix.h
-/Users/ngoccuongnguyen/lammps/src/suffix.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-variable.h
-/Users/ngoccuongnguyen/lammps/src/variable.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid_scaled.h
-pair_hybrid.h
-/Users/ngoccuongnguyen/lammps/src/pair_hybrid.h
-string
--
-vector
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_lj_cut.cpp
-pair_lj_cut.h
-/Users/ngoccuongnguyen/lammps/src/pair_lj_cut.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
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-math_const.h
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-memory.h
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-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-respa.h
-/Users/ngoccuongnguyen/lammps/src/respa.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_lj_cut.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_lj_cut_coul_cut.cpp
-pair_lj_cut_coul_cut.h
-/Users/ngoccuongnguyen/lammps/src/pair_lj_cut_coul_cut.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-math_const.h
-/Users/ngoccuongnguyen/lammps/src/math_const.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_lj_cut_coul_cut.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_lj_expand.cpp
-pair_lj_expand.h
-/Users/ngoccuongnguyen/lammps/src/pair_lj_expand.h
-cmath
--
-cstring
--
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-math_const.h
-/Users/ngoccuongnguyen/lammps/src/math_const.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_lj_expand.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_morse.cpp
-pair_morse.h
-/Users/ngoccuongnguyen/lammps/src/pair_morse.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_morse.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_soft.cpp
-pair_soft.h
-/Users/ngoccuongnguyen/lammps/src/pair_soft.h
-cmath
--
-cstring
--
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-math_const.h
-/Users/ngoccuongnguyen/lammps/src/math_const.h
-memory.h
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-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_soft.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_table.cpp
-pair_table.h
-/Users/ngoccuongnguyen/lammps/src/pair_table.h
-atom.h
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-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-table_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/table_file_reader.h
-tokenizer.h
-/Users/ngoccuongnguyen/lammps/src/tokenizer.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_table.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_yukawa.cpp
-pair_yukawa.h
-/Users/ngoccuongnguyen/lammps/src/pair_yukawa.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_yukawa.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_zbl.cpp
-pair_zbl.h
-/Users/ngoccuongnguyen/lammps/src/pair_zbl.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-force.h
-/Users/ngoccuongnguyen/lammps/src/force.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-neigh_list.h
-/Users/ngoccuongnguyen/lammps/src/neigh_list.h
-neighbor.h
-/Users/ngoccuongnguyen/lammps/src/neighbor.h
-pair_zbl_const.h
-/Users/ngoccuongnguyen/lammps/src/pair_zbl_const.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_zbl.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_zbl_const.h
-
-/Users/ngoccuongnguyen/lammps/src/pair_zero.cpp
-pair_zero.h
-/Users/ngoccuongnguyen/lammps/src/pair_zero.h
-atom.h
-/Users/ngoccuongnguyen/lammps/src/atom.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/pair_zero.h
-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-
-/Users/ngoccuongnguyen/lammps/src/platform.cpp
-platform.h
-/Users/ngoccuongnguyen/lammps/src/platform.h
-text_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/text_file_reader.h
-utils.h
-/Users/ngoccuongnguyen/lammps/src/utils.h
-deque
--
-exception
--
-mpi.h
--
-direct.h
--
-io.h
--
-sys/stat.h
--
-windows.h
--
-dirent.h
--
-dlfcn.h
--
-sys/resource.h
--
-sys/stat.h
--
-sys/types.h
--
-sys/utsname.h
--
-unistd.h
--
-fcntl.h
--
-sys/syslimits.h
--
-chrono
--
-cstring
--
-thread
--
-
-/Users/ngoccuongnguyen/lammps/src/platform.h
-lmptype.h
-/Users/ngoccuongnguyen/lammps/src/lmptype.h
-cstdio
--
-string
--
-vector
--
-
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-lmptype.h
-/Users/ngoccuongnguyen/lammps/src/lmptype.h
-mpi.h
--
-cstddef
--
-cstdio
--
-string
--
-fmt/format.h
-/Users/ngoccuongnguyen/lammps/src/fmt/format.h
-lammps.h
-/Users/ngoccuongnguyen/lammps/src/lammps.h
-platform.h
-/Users/ngoccuongnguyen/lammps/src/platform.h
-utils.h
-/Users/ngoccuongnguyen/lammps/src/utils.h
-
-/Users/ngoccuongnguyen/lammps/src/potential_file_reader.cpp
-potential_file_reader.h
-/Users/ngoccuongnguyen/lammps/src/potential_file_reader.h
-comm.h
-/Users/ngoccuongnguyen/lammps/src/comm.h
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-text_file_reader.h
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-
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-
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-universe.h
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-cmath
--
-cstring
--
-map
--
-utility
--
-
-/Users/ngoccuongnguyen/lammps/src/procmap.h
-pointers.h
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-
-/Users/ngoccuongnguyen/lammps/src/random_mars.cpp
-random_mars.h
-/Users/ngoccuongnguyen/lammps/src/random_mars.h
-cmath
--
-cstring
--
-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
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-/Users/ngoccuongnguyen/lammps/src/math_const.h
-
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-
-/Users/ngoccuongnguyen/lammps/src/random_park.cpp
-random_park.h
-/Users/ngoccuongnguyen/lammps/src/random_park.h
-cmath
--
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-/Users/ngoccuongnguyen/lammps/src/error.h
-
-/Users/ngoccuongnguyen/lammps/src/random_park.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-cstring
--
-
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-/Users/ngoccuongnguyen/lammps/src/update.h
-cctype
--
-cstring
--
-unordered_set
--
-
-/Users/ngoccuongnguyen/lammps/src/read_data.h
-command.h
-/Users/ngoccuongnguyen/lammps/src/command.h
-
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-style_reader.h
-/Users/ngoccuongnguyen/lammps/src/style_reader.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
-style_reader.h
-/Users/ngoccuongnguyen/lammps/src/style_reader.h
-
-/Users/ngoccuongnguyen/lammps/src/read_dump.h
-command.h
-/Users/ngoccuongnguyen/lammps/src/command.h
-
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-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
-lmprestart.h
-/Users/ngoccuongnguyen/lammps/src/lmprestart.h
-
-/Users/ngoccuongnguyen/lammps/src/read_restart.h
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-error.h
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-
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-pointers.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-tokenizer.h
-/Users/ngoccuongnguyen/lammps/src/tokenizer.h
-cstring
--
-utility
--
-
-/Users/ngoccuongnguyen/lammps/src/reader_native.h
-reader.h
-/Users/ngoccuongnguyen/lammps/src/reader.h
-map
--
-string
--
-
-/Users/ngoccuongnguyen/lammps/src/reader_xyz.cpp
-reader_xyz.h
-/Users/ngoccuongnguyen/lammps/src/reader_xyz.h
-memory.h
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-error.h
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-
-/Users/ngoccuongnguyen/lammps/src/reader_xyz.h
-reader.h
-/Users/ngoccuongnguyen/lammps/src/reader.h
-
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-update.h
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-variable.h
-/Users/ngoccuongnguyen/lammps/src/variable.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/region.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-
-/Users/ngoccuongnguyen/lammps/src/region_block.cpp
-region_block.h
-/Users/ngoccuongnguyen/lammps/src/region_block.h
-domain.h
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-/Users/ngoccuongnguyen/lammps/src/error.h
-math_extra.h
-/Users/ngoccuongnguyen/lammps/src/math_extra.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/region_block.h
-region.h
-/Users/ngoccuongnguyen/lammps/src/region.h
-
-/Users/ngoccuongnguyen/lammps/src/region_cone.cpp
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-domain.h
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-/Users/ngoccuongnguyen/lammps/src/error.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/region_cone.h
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-
-/Users/ngoccuongnguyen/lammps/src/region_cylinder.cpp
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-/Users/ngoccuongnguyen/lammps/src/variable.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/region_cylinder.h
-region.h
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-
-/Users/ngoccuongnguyen/lammps/src/region_deprecated.cpp
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-
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-
-/Users/ngoccuongnguyen/lammps/src/region_ellipsoid.cpp
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-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-variable.h
-/Users/ngoccuongnguyen/lammps/src/variable.h
-cmath
--
-limits
--
-
-/Users/ngoccuongnguyen/lammps/src/region_ellipsoid.h
-region.h
-/Users/ngoccuongnguyen/lammps/src/region.h
-
-/Users/ngoccuongnguyen/lammps/src/region_intersect.cpp
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-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/region_intersect.h
-region.h
-/Users/ngoccuongnguyen/lammps/src/region.h
-
-/Users/ngoccuongnguyen/lammps/src/region_plane.cpp
-region_plane.h
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-error.h
-/Users/ngoccuongnguyen/lammps/src/error.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/region_plane.h
-region.h
-/Users/ngoccuongnguyen/lammps/src/region.h
-
-/Users/ngoccuongnguyen/lammps/src/region_prism.cpp
-region_prism.h
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-math_extra.h
-/Users/ngoccuongnguyen/lammps/src/math_extra.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/region_prism.h
-region.h
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-
-/Users/ngoccuongnguyen/lammps/src/region_sphere.cpp
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-update.h
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-variable.h
-/Users/ngoccuongnguyen/lammps/src/variable.h
-cmath
--
-
-/Users/ngoccuongnguyen/lammps/src/region_sphere.h
-region.h
-/Users/ngoccuongnguyen/lammps/src/region.h
-
-/Users/ngoccuongnguyen/lammps/src/region_union.cpp
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-/Users/ngoccuongnguyen/lammps/src/error.h
-cstring
--
-
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-
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-special.h
-/Users/ngoccuongnguyen/lammps/src/special.h
-cstring
--
-
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-command.h
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-
-/Users/ngoccuongnguyen/lammps/src/rerun.cpp
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-timer.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/rerun.h
-command.h
-/Users/ngoccuongnguyen/lammps/src/command.h
-
-/Users/ngoccuongnguyen/lammps/src/reset_atom_ids.cpp
-reset_atom_ids.h
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-atom_vec.h
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-/Users/ngoccuongnguyen/lammps/src/special.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/reset_atom_ids.h
-command.h
-/Users/ngoccuongnguyen/lammps/src/command.h
-
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-modify.h
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-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/reset_mol_ids.h
-command.h
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-
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-improper.h
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-/Users/ngoccuongnguyen/lammps/src/update.h
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--
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-
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--
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-
-/Users/ngoccuongnguyen/lammps/src/set.cpp
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-/Users/ngoccuongnguyen/lammps/src/variable.h
-cmath
--
-cstring
--
-
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-command.h
-/Users/ngoccuongnguyen/lammps/src/command.h
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-
-/Users/ngoccuongnguyen/lammps/src/table_file_reader.h
-potential_file_reader.h
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-/Users/ngoccuongnguyen/lammps/src/tabular_function.cpp
-tabular_function.h
-/Users/ngoccuongnguyen/lammps/src/tabular_function.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/tabular_function.h
-
-/Users/ngoccuongnguyen/lammps/src/text_file_reader.cpp
-text_file_reader.h
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-cstring
--
-utility
--
-
-/Users/ngoccuongnguyen/lammps/src/text_file_reader.h
-tokenizer.h
-/Users/ngoccuongnguyen/lammps/src/tokenizer.h
-cstdio
--
-
-/Users/ngoccuongnguyen/lammps/src/thermo.cpp
-thermo.h
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-update.h
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-variable.h
-/Users/ngoccuongnguyen/lammps/src/variable.h
-cmath
--
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/thermo.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-map
--
-
-/Users/ngoccuongnguyen/lammps/src/timer.cpp
-timer.h
-/Users/ngoccuongnguyen/lammps/src/timer.h
-comm.h
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-fmt/chrono.h
-/Users/ngoccuongnguyen/lammps/src/fmt/chrono.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/timer.h
-pointers.h
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-
-/Users/ngoccuongnguyen/lammps/src/tokenizer.cpp
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-/Users/ngoccuongnguyen/lammps/src/utils.h
-utility
--
-
-/Users/ngoccuongnguyen/lammps/src/tokenizer.h
-lmptype.h
-/Users/ngoccuongnguyen/lammps/src/lmptype.h
-exception
--
-string
--
-vector
--
-
-/Users/ngoccuongnguyen/lammps/src/universe.cpp
-universe.h
-/Users/ngoccuongnguyen/lammps/src/universe.h
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-memory.h
-/Users/ngoccuongnguyen/lammps/src/memory.h
-cstring
--
-
-/Users/ngoccuongnguyen/lammps/src/universe.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-
-/Users/ngoccuongnguyen/lammps/src/update.cpp
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-/Users/ngoccuongnguyen/lammps/src/output.h
-cstring
--
-style_integrate.h
-/Users/ngoccuongnguyen/lammps/src/style_integrate.h
-style_minimize.h
-/Users/ngoccuongnguyen/lammps/src/style_minimize.h
-
-/Users/ngoccuongnguyen/lammps/src/update.h
-pointers.h
-/Users/ngoccuongnguyen/lammps/src/pointers.h
-map
--
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-/Users/ngoccuongnguyen/lammps/src/variable.h
-cctype
--
-cerrno
--
-cstring
--
-ctime
--
-
-/Users/ngoccuongnguyen/lammps/src/utils.h
-fmt/format.h
-/Users/ngoccuongnguyen/lammps/src/fmt/format.h
-lmptype.h
-/Users/ngoccuongnguyen/lammps/src/lmptype.h
-mpi.h
--
-vector
--
-
-/Users/ngoccuongnguyen/lammps/src/variable.cpp
-variable.h
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-cctype
--
-cmath
--
-cstring
--
-unordered_map
--
-
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-pointers.h
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-
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-/Users/ngoccuongnguyen/lammps/src/variable.h
-cmath
--
-cstring
--
-
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-command.h
-/Users/ngoccuongnguyen/lammps/src/command.h
-
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-timer.h
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-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
-
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-integrate.h
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-
-/Users/ngoccuongnguyen/lammps/src/version.h
-
-/Users/ngoccuongnguyen/lammps/src/write_coeff.cpp
-write_coeff.h
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-comm.h
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-dihedral.h
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-force.h
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-improper.h
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-pair.h
-/Users/ngoccuongnguyen/lammps/src/pair.h
-cctype
--
-cstring
--
-
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-command.h
-/Users/ngoccuongnguyen/lammps/src/command.h
-
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-write_data.h
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-atom.h
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-force.h
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-improper.h
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-pair.h
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-thermo.h
-/Users/ngoccuongnguyen/lammps/src/thermo.h
-update.h
-/Users/ngoccuongnguyen/lammps/src/update.h
-cstring
--
-
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-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/tupleobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/descrobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/dictobject.h
-cpython/dictobject.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/dictobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/enumobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/eval.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/exports.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/fileobject.h
-cpython/fileobject.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/fileobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/fileutils.h
-cpython/fileutils.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/fileutils.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/floatobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/funcobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/genericaliasobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/genobject.h
-pystate.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pystate.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/import.h
-cpython/import.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/import.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/intrcheck.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/iterobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/listobject.h
-cpython/listobject.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/listobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/longintrepr.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/longobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/memoryobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/methodobject.h
-cpython/methodobject.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/methodobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/modsupport.h
-stdarg.h
--
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/moduleobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/namespaceobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/object.h
-cpython/object.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/object.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/objimpl.h
-pymem.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pymem.h
-cpython/objimpl.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/objimpl.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/odictobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/osmodule.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/patchlevel.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/picklebufobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyarena.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pycapsule.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyconfig.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyctype.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pydebug.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyerrors.h
-stdarg.h
--
-cpython/pyerrors.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/pyerrors.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyfpe.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyframe.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyhash.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pylifecycle.h
-cpython/pylifecycle.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/pylifecycle.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pymacconfig.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pymacro.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pymath.h
-pyconfig.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyconfig.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pymem.h
-pyport.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h
-cpython/pymem.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/pymem.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h
-pyconfig.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyconfig.h
-inttypes.h
--
-stdlib.h
--
-ieeefp.h
--
-math.h
--
-sys/time.h
--
-time.h
--
-sys/time.h
--
-time.h
--
-sys/select.h
--
-sys/stat.h
--
-stat.h
--
-sys/types.h
--
-sys/termio.h
--
-ctype.h
--
-wctype.h
--
-exports.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/exports.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pystate.h
-cpython/pystate.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/pystate.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pystrcmp.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pystrtod.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pythonrun.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pythread.h
-pthread.h
--
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pytime.h
-pyconfig.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyconfig.h
-object.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/object.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/rangeobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/setobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/sliceobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/structseq.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/sysmodule.h
-cpython/sysmodule.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/sysmodule.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/traceback.h
-cpython/traceback.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/traceback.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/tracemalloc.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/tupleobject.h
-cpython/tupleobject.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/tupleobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/typeslots.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/unicodeobject.h
-stdarg.h
--
-ctype.h
--
-wchar.h
--
-cpython/unicodeobject.h
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/cpython/unicodeobject.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/warnings.h
-
-/usr/local/opt/python@3.9/Frameworks/Python.framework/Versions/3.9/include/python3.9/weakrefobject.h
-
-styles/lmpgitversion.h
-
-styles/lmpinstalledpkgs.h
-
-styles/packages_angle.h
-CG-SDK/angle_sdk.h
-styles/CG-SDK/angle_sdk.h
-CLASS2/angle_class2.h
-styles/CLASS2/angle_class2.h
-DIPOLE/angle_dipole.h
-styles/DIPOLE/angle_dipole.h
-EXTRA-MOLECULE/angle_cosine_delta.h
-styles/EXTRA-MOLECULE/angle_cosine_delta.h
-EXTRA-MOLECULE/angle_cosine_periodic.h
-styles/EXTRA-MOLECULE/angle_cosine_periodic.h
-EXTRA-MOLECULE/angle_cosine_shift.h
-styles/EXTRA-MOLECULE/angle_cosine_shift.h
-EXTRA-MOLECULE/angle_cosine_shift_exp.h
-styles/EXTRA-MOLECULE/angle_cosine_shift_exp.h
-EXTRA-MOLECULE/angle_fourier.h
-styles/EXTRA-MOLECULE/angle_fourier.h
-EXTRA-MOLECULE/angle_fourier_simple.h
-styles/EXTRA-MOLECULE/angle_fourier_simple.h
-EXTRA-MOLECULE/angle_gaussian.h
-styles/EXTRA-MOLECULE/angle_gaussian.h
-EXTRA-MOLECULE/angle_quartic.h
-styles/EXTRA-MOLECULE/angle_quartic.h
-MOFFF/angle_class2_p6.h
-styles/MOFFF/angle_class2_p6.h
-MOFFF/angle_cosine_buck6d.h
-styles/MOFFF/angle_cosine_buck6d.h
-MOLECULE/angle_charmm.h
-styles/MOLECULE/angle_charmm.h
-MOLECULE/angle_cosine.h
-styles/MOLECULE/angle_cosine.h
-MOLECULE/angle_cosine_squared.h
-styles/MOLECULE/angle_cosine_squared.h
-MOLECULE/angle_harmonic.h
-styles/MOLECULE/angle_harmonic.h
-MOLECULE/angle_table.h
-styles/MOLECULE/angle_table.h
-YAFF/angle_cross.h
-styles/YAFF/angle_cross.h
-YAFF/angle_mm3.h
-styles/YAFF/angle_mm3.h
-KOKKOS/angle_charmm_kokkos.h
-styles/KOKKOS/angle_charmm_kokkos.h
-KOKKOS/angle_class2_kokkos.h
-styles/KOKKOS/angle_class2_kokkos.h
-KOKKOS/angle_cosine_kokkos.h
-styles/KOKKOS/angle_cosine_kokkos.h
-KOKKOS/angle_harmonic_kokkos.h
-styles/KOKKOS/angle_harmonic_kokkos.h
-INTEL/angle_charmm_intel.h
-styles/INTEL/angle_charmm_intel.h
-INTEL/angle_harmonic_intel.h
-styles/INTEL/angle_harmonic_intel.h
-OPENMP/angle_charmm_omp.h
-styles/OPENMP/angle_charmm_omp.h
-OPENMP/angle_class2_omp.h
-styles/OPENMP/angle_class2_omp.h
-OPENMP/angle_cosine_delta_omp.h
-styles/OPENMP/angle_cosine_delta_omp.h
-OPENMP/angle_cosine_omp.h
-styles/OPENMP/angle_cosine_omp.h
-OPENMP/angle_cosine_periodic_omp.h
-styles/OPENMP/angle_cosine_periodic_omp.h
-OPENMP/angle_cosine_shift_exp_omp.h
-styles/OPENMP/angle_cosine_shift_exp_omp.h
-OPENMP/angle_cosine_shift_omp.h
-styles/OPENMP/angle_cosine_shift_omp.h
-OPENMP/angle_cosine_squared_omp.h
-styles/OPENMP/angle_cosine_squared_omp.h
-OPENMP/angle_dipole_omp.h
-styles/OPENMP/angle_dipole_omp.h
-OPENMP/angle_fourier_omp.h
-styles/OPENMP/angle_fourier_omp.h
-OPENMP/angle_fourier_simple_omp.h
-styles/OPENMP/angle_fourier_simple_omp.h
-OPENMP/angle_harmonic_omp.h
-styles/OPENMP/angle_harmonic_omp.h
-OPENMP/angle_quartic_omp.h
-styles/OPENMP/angle_quartic_omp.h
-OPENMP/angle_sdk_omp.h
-styles/OPENMP/angle_sdk_omp.h
-OPENMP/angle_table_omp.h
-styles/OPENMP/angle_table_omp.h
-
-styles/packages_atom.h
-AWPMD/atom_vec_wavepacket.h
-styles/AWPMD/atom_vec_wavepacket.h
-BPM/atom_vec_bpm_sphere.h
-styles/BPM/atom_vec_bpm_sphere.h
-CG-DNA/atom_vec_oxdna.h
-styles/CG-DNA/atom_vec_oxdna.h
-DIELECTRIC/atom_vec_dielectric.h
-styles/DIELECTRIC/atom_vec_dielectric.h
-DIPOLE/atom_vec_dipole.h
-styles/DIPOLE/atom_vec_dipole.h
-DPD-MESO/atom_vec_edpd.h
-styles/DPD-MESO/atom_vec_edpd.h
-DPD-MESO/atom_vec_mdpd.h
-styles/DPD-MESO/atom_vec_mdpd.h
-DPD-MESO/atom_vec_tdpd.h
-styles/DPD-MESO/atom_vec_tdpd.h
-DPD-REACT/atom_vec_dpd.h
-styles/DPD-REACT/atom_vec_dpd.h
-EFF/atom_vec_electron.h
-styles/EFF/atom_vec_electron.h
-MACHDYN/atom_vec_smd.h
-styles/MACHDYN/atom_vec_smd.h
-MESONT/atom_vec_mesont.h
-styles/MESONT/atom_vec_mesont.h
-MOLECULE/atom_vec_angle.h
-styles/MOLECULE/atom_vec_angle.h
-MOLECULE/atom_vec_bond.h
-styles/MOLECULE/atom_vec_bond.h
-MOLECULE/atom_vec_full.h
-styles/MOLECULE/atom_vec_full.h
-MOLECULE/atom_vec_molecular.h
-styles/MOLECULE/atom_vec_molecular.h
-MOLECULE/atom_vec_template.h
-styles/MOLECULE/atom_vec_template.h
-PERI/atom_vec_peri.h
-styles/PERI/atom_vec_peri.h
-SPH/atom_vec_sph.h
-styles/SPH/atom_vec_sph.h
-SPIN/atom_vec_spin.h
-styles/SPIN/atom_vec_spin.h
-KOKKOS/atom_vec_angle_kokkos.h
-styles/KOKKOS/atom_vec_angle_kokkos.h
-KOKKOS/atom_vec_atomic_kokkos.h
-styles/KOKKOS/atom_vec_atomic_kokkos.h
-KOKKOS/atom_vec_bond_kokkos.h
-styles/KOKKOS/atom_vec_bond_kokkos.h
-KOKKOS/atom_vec_charge_kokkos.h
-styles/KOKKOS/atom_vec_charge_kokkos.h
-KOKKOS/atom_vec_dpd_kokkos.h
-styles/KOKKOS/atom_vec_dpd_kokkos.h
-KOKKOS/atom_vec_full_kokkos.h
-styles/KOKKOS/atom_vec_full_kokkos.h
-KOKKOS/atom_vec_hybrid_kokkos.h
-styles/KOKKOS/atom_vec_hybrid_kokkos.h
-KOKKOS/atom_vec_molecular_kokkos.h
-styles/KOKKOS/atom_vec_molecular_kokkos.h
-KOKKOS/atom_vec_sphere_kokkos.h
-styles/KOKKOS/atom_vec_sphere_kokkos.h
-KOKKOS/atom_vec_spin_kokkos.h
-styles/KOKKOS/atom_vec_spin_kokkos.h
-
-styles/packages_body.h
-BODY/body_nparticle.h
-styles/BODY/body_nparticle.h
-BODY/body_rounded_polygon.h
-styles/BODY/body_rounded_polygon.h
-BODY/body_rounded_polyhedron.h
-styles/BODY/body_rounded_polyhedron.h
-
-styles/packages_bond.h
-BPM/bond_bpm_rotational.h
-styles/BPM/bond_bpm_rotational.h
-BPM/bond_bpm_spring.h
-styles/BPM/bond_bpm_spring.h
-CG-DNA/bond_oxdna2_fene.h
-styles/CG-DNA/bond_oxdna2_fene.h
-CG-DNA/bond_oxdna_fene.h
-styles/CG-DNA/bond_oxdna_fene.h
-CG-DNA/bond_oxrna2_fene.h
-styles/CG-DNA/bond_oxrna2_fene.h
-CLASS2/bond_class2.h
-styles/CLASS2/bond_class2.h
-EXTRA-MOLECULE/bond_fene_nm.h
-styles/EXTRA-MOLECULE/bond_fene_nm.h
-EXTRA-MOLECULE/bond_gaussian.h
-styles/EXTRA-MOLECULE/bond_gaussian.h
-EXTRA-MOLECULE/bond_harmonic_shift.h
-styles/EXTRA-MOLECULE/bond_harmonic_shift.h
-EXTRA-MOLECULE/bond_harmonic_shift_cut.h
-styles/EXTRA-MOLECULE/bond_harmonic_shift_cut.h
-EXTRA-MOLECULE/bond_nonlinear.h
-styles/EXTRA-MOLECULE/bond_nonlinear.h
-MISC/bond_special.h
-styles/MISC/bond_special.h
-MOLECULE/bond_fene.h
-styles/MOLECULE/bond_fene.h
-MOLECULE/bond_fene_expand.h
-styles/MOLECULE/bond_fene_expand.h
-MOLECULE/bond_gromos.h
-styles/MOLECULE/bond_gromos.h
-MOLECULE/bond_harmonic.h
-styles/MOLECULE/bond_harmonic.h
-MOLECULE/bond_morse.h
-styles/MOLECULE/bond_morse.h
-MOLECULE/bond_quartic.h
-styles/MOLECULE/bond_quartic.h
-MOLECULE/bond_table.h
-styles/MOLECULE/bond_table.h
-YAFF/bond_mm3.h
-styles/YAFF/bond_mm3.h
-KOKKOS/bond_class2_kokkos.h
-styles/KOKKOS/bond_class2_kokkos.h
-KOKKOS/bond_fene_kokkos.h
-styles/KOKKOS/bond_fene_kokkos.h
-KOKKOS/bond_harmonic_kokkos.h
-styles/KOKKOS/bond_harmonic_kokkos.h
-INTEL/bond_fene_intel.h
-styles/INTEL/bond_fene_intel.h
-INTEL/bond_harmonic_intel.h
-styles/INTEL/bond_harmonic_intel.h
-OPENMP/bond_class2_omp.h
-styles/OPENMP/bond_class2_omp.h
-OPENMP/bond_fene_expand_omp.h
-styles/OPENMP/bond_fene_expand_omp.h
-OPENMP/bond_fene_omp.h
-styles/OPENMP/bond_fene_omp.h
-OPENMP/bond_gromos_omp.h
-styles/OPENMP/bond_gromos_omp.h
-OPENMP/bond_harmonic_omp.h
-styles/OPENMP/bond_harmonic_omp.h
-OPENMP/bond_harmonic_shift_cut_omp.h
-styles/OPENMP/bond_harmonic_shift_cut_omp.h
-OPENMP/bond_harmonic_shift_omp.h
-styles/OPENMP/bond_harmonic_shift_omp.h
-OPENMP/bond_morse_omp.h
-styles/OPENMP/bond_morse_omp.h
-OPENMP/bond_nonlinear_omp.h
-styles/OPENMP/bond_nonlinear_omp.h
-OPENMP/bond_quartic_omp.h
-styles/OPENMP/bond_quartic_omp.h
-OPENMP/bond_table_omp.h
-styles/OPENMP/bond_table_omp.h
-
-styles/packages_command.h
-COLVARS/group_ndx.h
-styles/COLVARS/group_ndx.h
-COLVARS/ndx_group.h
-styles/COLVARS/ndx_group.h
-KIM/kim_command.h
-styles/KIM/kim_command.h
-MDI/mdi_command.h
-styles/MDI/mdi_command.h
-PHONON/dynamical_matrix.h
-styles/PHONON/dynamical_matrix.h
-PHONON/third_order.h
-styles/PHONON/third_order.h
-PLUGIN/plugin.h
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-styles/ASPHERE/pair_resquared.h
-ASPHERE/pair_tri_lj.h
-styles/ASPHERE/pair_tri_lj.h
-AWPMD/pair_awpmd_cut.h
-styles/AWPMD/pair_awpmd_cut.h
-BODY/pair_body_nparticle.h
-styles/BODY/pair_body_nparticle.h
-BODY/pair_body_rounded_polygon.h
-styles/BODY/pair_body_rounded_polygon.h
-BODY/pair_body_rounded_polyhedron.h
-styles/BODY/pair_body_rounded_polyhedron.h
-BPM/pair_bpm_spring.h
-styles/BPM/pair_bpm_spring.h
-CG-DNA/pair_oxdna2_coaxstk.h
-styles/CG-DNA/pair_oxdna2_coaxstk.h
-CG-DNA/pair_oxdna2_dh.h
-styles/CG-DNA/pair_oxdna2_dh.h
-CG-DNA/pair_oxdna2_excv.h
-styles/CG-DNA/pair_oxdna2_excv.h
-CG-DNA/pair_oxdna_coaxstk.h
-styles/CG-DNA/pair_oxdna_coaxstk.h
-CG-DNA/pair_oxdna_excv.h
-styles/CG-DNA/pair_oxdna_excv.h
-CG-DNA/pair_oxdna_hbond.h
-styles/CG-DNA/pair_oxdna_hbond.h
-CG-DNA/pair_oxdna_stk.h
-styles/CG-DNA/pair_oxdna_stk.h
-CG-DNA/pair_oxdna_xstk.h
-styles/CG-DNA/pair_oxdna_xstk.h
-CG-DNA/pair_oxrna2_dh.h
-styles/CG-DNA/pair_oxrna2_dh.h
-CG-DNA/pair_oxrna2_excv.h
-styles/CG-DNA/pair_oxrna2_excv.h
-CG-DNA/pair_oxrna2_hbond.h
-styles/CG-DNA/pair_oxrna2_hbond.h
-CG-DNA/pair_oxrna2_stk.h
-styles/CG-DNA/pair_oxrna2_stk.h
-CG-DNA/pair_oxrna2_xstk.h
-styles/CG-DNA/pair_oxrna2_xstk.h
-CG-SDK/pair_lj_sdk.h
-styles/CG-SDK/pair_lj_sdk.h
-CG-SDK/pair_lj_sdk_coul_long.h
-styles/CG-SDK/pair_lj_sdk_coul_long.h
-CG-SDK/pair_lj_sdk_coul_msm.h
-styles/CG-SDK/pair_lj_sdk_coul_msm.h
-CLASS2/pair_lj_class2.h
-styles/CLASS2/pair_lj_class2.h
-CLASS2/pair_lj_class2_coul_cut.h
-styles/CLASS2/pair_lj_class2_coul_cut.h
-CLASS2/pair_lj_class2_coul_long.h
-styles/CLASS2/pair_lj_class2_coul_long.h
-COLLOID/pair_brownian.h
-styles/COLLOID/pair_brownian.h
-COLLOID/pair_brownian_poly.h
-styles/COLLOID/pair_brownian_poly.h
-COLLOID/pair_colloid.h
-styles/COLLOID/pair_colloid.h
-COLLOID/pair_lubricate.h
-styles/COLLOID/pair_lubricate.h
-COLLOID/pair_lubricateU.h
-styles/COLLOID/pair_lubricateU.h
-COLLOID/pair_lubricateU_poly.h
-styles/COLLOID/pair_lubricateU_poly.h
-COLLOID/pair_lubricate_poly.h
-styles/COLLOID/pair_lubricate_poly.h
-COLLOID/pair_yukawa_colloid.h
-styles/COLLOID/pair_yukawa_colloid.h
-DIELECTRIC/pair_coul_cut_dielectric.h
-styles/DIELECTRIC/pair_coul_cut_dielectric.h
-DIELECTRIC/pair_coul_long_dielectric.h
-styles/DIELECTRIC/pair_coul_long_dielectric.h
-DIELECTRIC/pair_lj_cut_coul_cut_dielectric.h
-styles/DIELECTRIC/pair_lj_cut_coul_cut_dielectric.h
-DIELECTRIC/pair_lj_cut_coul_debye_dielectric.h
-styles/DIELECTRIC/pair_lj_cut_coul_debye_dielectric.h
-DIELECTRIC/pair_lj_cut_coul_long_dielectric.h
-styles/DIELECTRIC/pair_lj_cut_coul_long_dielectric.h
-DIELECTRIC/pair_lj_cut_coul_msm_dielectric.h
-styles/DIELECTRIC/pair_lj_cut_coul_msm_dielectric.h
-DIELECTRIC/pair_lj_long_coul_long_dielectric.h
-styles/DIELECTRIC/pair_lj_long_coul_long_dielectric.h
-DIPOLE/pair_lj_cut_dipole_cut.h
-styles/DIPOLE/pair_lj_cut_dipole_cut.h
-DIPOLE/pair_lj_cut_dipole_long.h
-styles/DIPOLE/pair_lj_cut_dipole_long.h
-DIPOLE/pair_lj_long_dipole_long.h
-styles/DIPOLE/pair_lj_long_dipole_long.h
-DIPOLE/pair_lj_sf_dipole_sf.h
-styles/DIPOLE/pair_lj_sf_dipole_sf.h
-DPD-BASIC/pair_dpd.h
-styles/DPD-BASIC/pair_dpd.h
-DPD-BASIC/pair_dpd_ext.h
-styles/DPD-BASIC/pair_dpd_ext.h
-DPD-BASIC/pair_dpd_ext_tstat.h
-styles/DPD-BASIC/pair_dpd_ext_tstat.h
-DPD-BASIC/pair_dpd_tstat.h
-styles/DPD-BASIC/pair_dpd_tstat.h
-DPD-MESO/pair_edpd.h
-styles/DPD-MESO/pair_edpd.h
-DPD-MESO/pair_mdpd.h
-styles/DPD-MESO/pair_mdpd.h
-DPD-MESO/pair_mdpd_rhosum.h
-styles/DPD-MESO/pair_mdpd_rhosum.h
-DPD-MESO/pair_tdpd.h
-styles/DPD-MESO/pair_tdpd.h
-DPD-REACT/pair_dpd_fdt.h
-styles/DPD-REACT/pair_dpd_fdt.h
-DPD-REACT/pair_dpd_fdt_energy.h
-styles/DPD-REACT/pair_dpd_fdt_energy.h
-DPD-REACT/pair_exp6_rx.h
-styles/DPD-REACT/pair_exp6_rx.h
-DPD-REACT/pair_multi_lucy.h
-styles/DPD-REACT/pair_multi_lucy.h
-DPD-REACT/pair_multi_lucy_rx.h
-styles/DPD-REACT/pair_multi_lucy_rx.h
-DPD-REACT/pair_table_rx.h
-styles/DPD-REACT/pair_table_rx.h
-DPD-SMOOTH/pair_sdpd_taitwater_isothermal.h
-styles/DPD-SMOOTH/pair_sdpd_taitwater_isothermal.h
-DRUDE/pair_coul_tt.h
-styles/DRUDE/pair_coul_tt.h
-DRUDE/pair_lj_cut_thole_long.h
-styles/DRUDE/pair_lj_cut_thole_long.h
-DRUDE/pair_thole.h
-styles/DRUDE/pair_thole.h
-EFF/pair_eff_cut.h
-styles/EFF/pair_eff_cut.h
-EXTRA-PAIR/pair_beck.h
-styles/EXTRA-PAIR/pair_beck.h
-EXTRA-PAIR/pair_born_coul_dsf.h
-styles/EXTRA-PAIR/pair_born_coul_dsf.h
-EXTRA-PAIR/pair_born_coul_wolf.h
-styles/EXTRA-PAIR/pair_born_coul_wolf.h
-EXTRA-PAIR/pair_buck_mdf.h
-styles/EXTRA-PAIR/pair_buck_mdf.h
-EXTRA-PAIR/pair_cosine_squared.h
-styles/EXTRA-PAIR/pair_cosine_squared.h
-EXTRA-PAIR/pair_coul_cut_global.h
-styles/EXTRA-PAIR/pair_coul_cut_global.h
-EXTRA-PAIR/pair_coul_diel.h
-styles/EXTRA-PAIR/pair_coul_diel.h
-EXTRA-PAIR/pair_coul_exclude.h
-styles/EXTRA-PAIR/pair_coul_exclude.h
-EXTRA-PAIR/pair_coul_slater_cut.h
-styles/EXTRA-PAIR/pair_coul_slater_cut.h
-EXTRA-PAIR/pair_coul_slater_long.h
-styles/EXTRA-PAIR/pair_coul_slater_long.h
-EXTRA-PAIR/pair_e3b.h
-styles/EXTRA-PAIR/pair_e3b.h
-EXTRA-PAIR/pair_gauss.h
-styles/EXTRA-PAIR/pair_gauss.h
-EXTRA-PAIR/pair_gauss_cut.h
-styles/EXTRA-PAIR/pair_gauss_cut.h
-EXTRA-PAIR/pair_harmonic_cut.h
-styles/EXTRA-PAIR/pair_harmonic_cut.h
-EXTRA-PAIR/pair_lennard_mdf.h
-styles/EXTRA-PAIR/pair_lennard_mdf.h
-EXTRA-PAIR/pair_lj96_cut.h
-styles/EXTRA-PAIR/pair_lj96_cut.h
-EXTRA-PAIR/pair_lj_cubic.h
-styles/EXTRA-PAIR/pair_lj_cubic.h
-EXTRA-PAIR/pair_lj_cut_coul_debye.h
-styles/EXTRA-PAIR/pair_lj_cut_coul_debye.h
-EXTRA-PAIR/pair_lj_cut_coul_dsf.h
-styles/EXTRA-PAIR/pair_lj_cut_coul_dsf.h
-EXTRA-PAIR/pair_lj_cut_coul_wolf.h
-styles/EXTRA-PAIR/pair_lj_cut_coul_wolf.h
-EXTRA-PAIR/pair_lj_expand_coul_long.h
-styles/EXTRA-PAIR/pair_lj_expand_coul_long.h
-EXTRA-PAIR/pair_lj_gromacs.h
-styles/EXTRA-PAIR/pair_lj_gromacs.h
-EXTRA-PAIR/pair_lj_gromacs_coul_gromacs.h
-styles/EXTRA-PAIR/pair_lj_gromacs_coul_gromacs.h
-EXTRA-PAIR/pair_lj_mdf.h
-styles/EXTRA-PAIR/pair_lj_mdf.h
-EXTRA-PAIR/pair_lj_relres.h
-styles/EXTRA-PAIR/pair_lj_relres.h
-EXTRA-PAIR/pair_lj_smooth.h
-styles/EXTRA-PAIR/pair_lj_smooth.h
-EXTRA-PAIR/pair_lj_smooth_linear.h
-styles/EXTRA-PAIR/pair_lj_smooth_linear.h
-EXTRA-PAIR/pair_mie_cut.h
-styles/EXTRA-PAIR/pair_mie_cut.h
-EXTRA-PAIR/pair_momb.h
-styles/EXTRA-PAIR/pair_momb.h
-EXTRA-PAIR/pair_morse_smooth_linear.h
-styles/EXTRA-PAIR/pair_morse_smooth_linear.h
-EXTRA-PAIR/pair_nm_cut.h
-styles/EXTRA-PAIR/pair_nm_cut.h
-EXTRA-PAIR/pair_nm_cut_coul_cut.h
-styles/EXTRA-PAIR/pair_nm_cut_coul_cut.h
-EXTRA-PAIR/pair_nm_cut_coul_long.h
-styles/EXTRA-PAIR/pair_nm_cut_coul_long.h
-EXTRA-PAIR/pair_nm_cut_split.h
-styles/EXTRA-PAIR/pair_nm_cut_split.h
-EXTRA-PAIR/pair_ufm.h
-styles/EXTRA-PAIR/pair_ufm.h
-EXTRA-PAIR/pair_wf_cut.h
-styles/EXTRA-PAIR/pair_wf_cut.h
-FEP/pair_coul_cut_soft.h
-styles/FEP/pair_coul_cut_soft.h
-FEP/pair_coul_long_soft.h
-styles/FEP/pair_coul_long_soft.h
-FEP/pair_lj_charmm_coul_long_soft.h
-styles/FEP/pair_lj_charmm_coul_long_soft.h
-FEP/pair_lj_class2_coul_cut_soft.h
-styles/FEP/pair_lj_class2_coul_cut_soft.h
-FEP/pair_lj_class2_coul_long_soft.h
-styles/FEP/pair_lj_class2_coul_long_soft.h
-FEP/pair_lj_class2_soft.h
-styles/FEP/pair_lj_class2_soft.h
-FEP/pair_lj_cut_coul_cut_soft.h
-styles/FEP/pair_lj_cut_coul_cut_soft.h
-FEP/pair_lj_cut_coul_long_soft.h
-styles/FEP/pair_lj_cut_coul_long_soft.h
-FEP/pair_lj_cut_soft.h
-styles/FEP/pair_lj_cut_soft.h
-FEP/pair_lj_cut_tip4p_long_soft.h
-styles/FEP/pair_lj_cut_tip4p_long_soft.h
-FEP/pair_morse_soft.h
-styles/FEP/pair_morse_soft.h
-FEP/pair_tip4p_long_soft.h
-styles/FEP/pair_tip4p_long_soft.h
-GRANULAR/pair_gran_hertz_history.h
-styles/GRANULAR/pair_gran_hertz_history.h
-GRANULAR/pair_gran_hooke.h
-styles/GRANULAR/pair_gran_hooke.h
-GRANULAR/pair_gran_hooke_history.h
-styles/GRANULAR/pair_gran_hooke_history.h
-GRANULAR/pair_granular.h
-styles/GRANULAR/pair_granular.h
-INTERLAYER/pair_coul_shield.h
-styles/INTERLAYER/pair_coul_shield.h
-INTERLAYER/pair_drip.h
-styles/INTERLAYER/pair_drip.h
-INTERLAYER/pair_ilp_graphene_hbn.h
-styles/INTERLAYER/pair_ilp_graphene_hbn.h
-INTERLAYER/pair_ilp_tmd.h
-styles/INTERLAYER/pair_ilp_tmd.h
-INTERLAYER/pair_kolmogorov_crespi_full.h
-styles/INTERLAYER/pair_kolmogorov_crespi_full.h
-INTERLAYER/pair_kolmogorov_crespi_z.h
-styles/INTERLAYER/pair_kolmogorov_crespi_z.h
-INTERLAYER/pair_lebedeva_z.h
-styles/INTERLAYER/pair_lebedeva_z.h
-INTERLAYER/pair_saip_metal.h
-styles/INTERLAYER/pair_saip_metal.h
-KIM/pair_kim.h
-styles/KIM/pair_kim.h
-KSPACE/pair_born_coul_long.h
-styles/KSPACE/pair_born_coul_long.h
-KSPACE/pair_born_coul_msm.h
-styles/KSPACE/pair_born_coul_msm.h
-KSPACE/pair_buck_coul_long.h
-styles/KSPACE/pair_buck_coul_long.h
-KSPACE/pair_buck_coul_msm.h
-styles/KSPACE/pair_buck_coul_msm.h
-KSPACE/pair_buck_long_coul_long.h
-styles/KSPACE/pair_buck_long_coul_long.h
-KSPACE/pair_coul_long.h
-styles/KSPACE/pair_coul_long.h
-KSPACE/pair_coul_msm.h
-styles/KSPACE/pair_coul_msm.h
-KSPACE/pair_coul_streitz.h
-styles/KSPACE/pair_coul_streitz.h
-KSPACE/pair_lj_charmm_coul_long.h
-styles/KSPACE/pair_lj_charmm_coul_long.h
-KSPACE/pair_lj_charmm_coul_msm.h
-styles/KSPACE/pair_lj_charmm_coul_msm.h
-KSPACE/pair_lj_charmmfsw_coul_long.h
-styles/KSPACE/pair_lj_charmmfsw_coul_long.h
-KSPACE/pair_lj_cut_coul_long.h
-styles/KSPACE/pair_lj_cut_coul_long.h
-KSPACE/pair_lj_cut_coul_msm.h
-styles/KSPACE/pair_lj_cut_coul_msm.h
-KSPACE/pair_lj_cut_tip4p_long.h
-styles/KSPACE/pair_lj_cut_tip4p_long.h
-KSPACE/pair_lj_long_coul_long.h
-styles/KSPACE/pair_lj_long_coul_long.h
-KSPACE/pair_lj_long_tip4p_long.h
-styles/KSPACE/pair_lj_long_tip4p_long.h
-KSPACE/pair_tip4p_long.h
-styles/KSPACE/pair_tip4p_long.h
-MACHDYN/pair_smd_hertz.h
-styles/MACHDYN/pair_smd_hertz.h
-MACHDYN/pair_smd_tlsph.h
-styles/MACHDYN/pair_smd_tlsph.h
-MACHDYN/pair_smd_triangulated_surface.h
-styles/MACHDYN/pair_smd_triangulated_surface.h
-MACHDYN/pair_smd_ulsph.h
-styles/MACHDYN/pair_smd_ulsph.h
-MANYBODY/pair_adp.h
-styles/MANYBODY/pair_adp.h
-MANYBODY/pair_airebo.h
-styles/MANYBODY/pair_airebo.h
-MANYBODY/pair_airebo_morse.h
-styles/MANYBODY/pair_airebo_morse.h
-MANYBODY/pair_atm.h
-styles/MANYBODY/pair_atm.h
-MANYBODY/pair_bop.h
-styles/MANYBODY/pair_bop.h
-MANYBODY/pair_comb.h
-styles/MANYBODY/pair_comb.h
-MANYBODY/pair_comb3.h
-styles/MANYBODY/pair_comb3.h
-MANYBODY/pair_eam.h
-styles/MANYBODY/pair_eam.h
-MANYBODY/pair_eam_alloy.h
-styles/MANYBODY/pair_eam_alloy.h
-MANYBODY/pair_eam_cd.h
-styles/MANYBODY/pair_eam_cd.h
-MANYBODY/pair_eam_fs.h
-styles/MANYBODY/pair_eam_fs.h
-MANYBODY/pair_eam_he.h
-styles/MANYBODY/pair_eam_he.h
-MANYBODY/pair_edip.h
-styles/MANYBODY/pair_edip.h
-MANYBODY/pair_edip_multi.h
-styles/MANYBODY/pair_edip_multi.h
-MANYBODY/pair_eim.h
-styles/MANYBODY/pair_eim.h
-MANYBODY/pair_extep.h
-styles/MANYBODY/pair_extep.h
-MANYBODY/pair_gw.h
-styles/MANYBODY/pair_gw.h
-MANYBODY/pair_gw_zbl.h
-styles/MANYBODY/pair_gw_zbl.h
-MANYBODY/pair_lcbop.h
-styles/MANYBODY/pair_lcbop.h
-MANYBODY/pair_local_density.h
-styles/MANYBODY/pair_local_density.h
-MANYBODY/pair_meam_spline.h
-styles/MANYBODY/pair_meam_spline.h
-MANYBODY/pair_meam_sw_spline.h
-styles/MANYBODY/pair_meam_sw_spline.h
-MANYBODY/pair_nb3b_harmonic.h
-styles/MANYBODY/pair_nb3b_harmonic.h
-MANYBODY/pair_polymorphic.h
-styles/MANYBODY/pair_polymorphic.h
-MANYBODY/pair_rebo.h
-styles/MANYBODY/pair_rebo.h
-MANYBODY/pair_sw.h
-styles/MANYBODY/pair_sw.h
-MANYBODY/pair_sw_angle_table.h
-styles/MANYBODY/pair_sw_angle_table.h
-MANYBODY/pair_sw_mod.h
-styles/MANYBODY/pair_sw_mod.h
-MANYBODY/pair_tersoff.h
-styles/MANYBODY/pair_tersoff.h
-MANYBODY/pair_tersoff_mod.h
-styles/MANYBODY/pair_tersoff_mod.h
-MANYBODY/pair_tersoff_mod_c.h
-styles/MANYBODY/pair_tersoff_mod_c.h
-MANYBODY/pair_tersoff_table.h
-styles/MANYBODY/pair_tersoff_table.h
-MANYBODY/pair_tersoff_zbl.h
-styles/MANYBODY/pair_tersoff_zbl.h
-MANYBODY/pair_threebody_table.h
-styles/MANYBODY/pair_threebody_table.h
-MANYBODY/pair_vashishta.h
-styles/MANYBODY/pair_vashishta.h
-MANYBODY/pair_vashishta_table.h
-styles/MANYBODY/pair_vashishta_table.h
-MC/pair_dsmc.h
-styles/MC/pair_dsmc.h
-MEAM/pair_meam.h
-styles/MEAM/pair_meam.h
-MESONT/pair_mesocnt.h
-styles/MESONT/pair_mesocnt.h
-MESONT/pair_mesont_tpm.h
-styles/MESONT/pair_mesont_tpm.h
-MGPT/pair_mgpt.h
-styles/MGPT/pair_mgpt.h
-MISC/pair_agni.h
-styles/MISC/pair_agni.h
-MISC/pair_list.h
-styles/MISC/pair_list.h
-MISC/pair_srp.h
-styles/MISC/pair_srp.h
-MISC/pair_tracker.h
-styles/MISC/pair_tracker.h
-ML-HDNNP/pair_hdnnp.h
-styles/ML-HDNNP/pair_hdnnp.h
-ML-IAP/pair_mliap.h
-styles/ML-IAP/pair_mliap.h
-ML-PACE/pair_pace.h
-styles/ML-PACE/pair_pace.h
-ML-QUIP/pair_quip.h
-styles/ML-QUIP/pair_quip.h
-ML-RANN/pair_rann.h
-styles/ML-RANN/pair_rann.h
-ML-SNAP/pair_snap.h
-styles/ML-SNAP/pair_snap.h
-MOFFF/pair_buck6d_coul_gauss_dsf.h
-styles/MOFFF/pair_buck6d_coul_gauss_dsf.h
-MOFFF/pair_buck6d_coul_gauss_long.h
-styles/MOFFF/pair_buck6d_coul_gauss_long.h
-MOLECULE/pair_hbond_dreiding_lj.h
-styles/MOLECULE/pair_hbond_dreiding_lj.h
-MOLECULE/pair_hbond_dreiding_morse.h
-styles/MOLECULE/pair_hbond_dreiding_morse.h
-MOLECULE/pair_lj_charmm_coul_charmm.h
-styles/MOLECULE/pair_lj_charmm_coul_charmm.h
-MOLECULE/pair_lj_charmm_coul_charmm_implicit.h
-styles/MOLECULE/pair_lj_charmm_coul_charmm_implicit.h
-MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.h
-styles/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.h
-MOLECULE/pair_lj_cut_tip4p_cut.h
-styles/MOLECULE/pair_lj_cut_tip4p_cut.h
-MOLECULE/pair_tip4p_cut.h
-styles/MOLECULE/pair_tip4p_cut.h
-PERI/pair_peri_eps.h
-styles/PERI/pair_peri_eps.h
-PERI/pair_peri_lps.h
-styles/PERI/pair_peri_lps.h
-PERI/pair_peri_pmb.h
-styles/PERI/pair_peri_pmb.h
-PERI/pair_peri_ves.h
-styles/PERI/pair_peri_ves.h
-PYTHON/pair_python.h
-styles/PYTHON/pair_python.h
-REAXFF/pair_reaxff.h
-styles/REAXFF/pair_reaxff.h
-SMTBQ/pair_smatb.h
-styles/SMTBQ/pair_smatb.h
-SMTBQ/pair_smatb_single.h
-styles/SMTBQ/pair_smatb_single.h
-SMTBQ/pair_smtbq.h
-styles/SMTBQ/pair_smtbq.h
-SPH/pair_sph_heatconduction.h
-styles/SPH/pair_sph_heatconduction.h
-SPH/pair_sph_idealgas.h
-styles/SPH/pair_sph_idealgas.h
-SPH/pair_sph_lj.h
-styles/SPH/pair_sph_lj.h
-SPH/pair_sph_rhosum.h
-styles/SPH/pair_sph_rhosum.h
-SPH/pair_sph_taitwater.h
-styles/SPH/pair_sph_taitwater.h
-SPH/pair_sph_taitwater_morris.h
-styles/SPH/pair_sph_taitwater_morris.h
-SPIN/pair_spin_dipole_cut.h
-styles/SPIN/pair_spin_dipole_cut.h
-SPIN/pair_spin_dipole_long.h
-styles/SPIN/pair_spin_dipole_long.h
-SPIN/pair_spin_dmi.h
-styles/SPIN/pair_spin_dmi.h
-SPIN/pair_spin_exchange.h
-styles/SPIN/pair_spin_exchange.h
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-	@echo "... domain.h"
-	@echo "... error.h"
-	@echo "... exceptions.h"
-	@echo "... fix-homepage"
-	@echo "... fix-permissions"
-	@echo "... fix-whitespace"
-	@echo "... fix.h"
-	@echo "... force.h"
-	@echo "... gitversion"
-	@echo "... group.h"
-	@echo "... improper.h"
-	@echo "... info.h"
-	@echo "... input.h"
-	@echo "... install-python"
-	@echo "... kspace.h"
-	@echo "... lammps.h"
-	@echo "... lattice.h"
-	@echo "... library.h"
-	@echo "... lmppython.h"
-	@echo "... lmptype.h"
-	@echo "... memory.h"
-	@echo "... modify.h"
-	@echo "... neigh_list.h"
-	@echo "... neighbor.h"
-	@echo "... output.h"
-	@echo "... pair.h"
-	@echo "... pointers.h"
-	@echo "... region.h"
-	@echo "... timer.h"
-	@echo "... universe.h"
-	@echo "... update.h"
-	@echo "... utils.h"
-	@echo "... variable.h"
-	@echo "... lammps"
-	@echo "... lmp"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald_dipole.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald_dipole.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald_dipole.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald_dipole_spin.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald_dipole_spin.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald_dipole_spin.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald_disp.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald_disp.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/ewald_disp.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/fft3d.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/fft3d.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/fft3d.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/fft3d_wrap.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/fft3d_wrap.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/fft3d_wrap.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/fix_tune_kspace.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/fix_tune_kspace.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/fix_tune_kspace.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/msm.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/msm.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/msm.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/msm_cg.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/msm_cg.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/msm_cg.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_born_coul_long.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_born_coul_long.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_born_coul_long.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_born_coul_msm.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_born_coul_msm.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_born_coul_msm.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_buck_coul_long.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_buck_coul_long.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_buck_coul_long.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_buck_coul_msm.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_buck_coul_msm.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_buck_coul_msm.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_buck_long_coul_long.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_buck_long_coul_long.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_buck_long_coul_long.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_coul_long.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_coul_long.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_coul_long.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_coul_msm.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_coul_msm.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_coul_msm.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_coul_streitz.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_coul_streitz.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_coul_streitz.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_charmm_coul_long.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_charmm_coul_long.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_charmm_coul_long.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_charmm_coul_msm.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_charmm_coul_msm.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_charmm_coul_msm.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_charmmfsw_coul_long.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_charmmfsw_coul_long.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_charmmfsw_coul_long.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_coul_long.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_coul_long.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_coul_long.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_coul_msm.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_coul_msm.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_coul_msm.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_tip4p_long.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_tip4p_long.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_cut_tip4p_long.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_long_coul_long.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_long_coul_long.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_long_coul_long.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_long_tip4p_long.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_long_tip4p_long.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_lj_long_tip4p_long.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_tip4p_long.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_tip4p_long.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pair_tip4p_long.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_cg.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_cg.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_cg.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_dipole.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_dipole.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_dipole.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_dipole_spin.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_dipole_spin.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_dipole_spin.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_disp.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_disp.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_disp.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_disp_tip4p.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_disp_tip4p.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_disp_tip4p.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_stagger.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_stagger.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_stagger.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_tip4p.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_tip4p.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/pppm_tip4p.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/remap.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/remap.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/remap.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/remap_wrap.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/remap_wrap.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/KSPACE/remap_wrap.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/fix_qeq_comb.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/fix_qeq_comb.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/fix_qeq_comb.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_adp.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_adp.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_adp.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo_morse.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo_morse.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_airebo_morse.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_atm.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_atm.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_atm.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_bop.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_bop.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_bop.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb3.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb3.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_comb3.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_alloy.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_alloy.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_alloy.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_cd.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_cd.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_cd.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_fs.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_fs.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_fs.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_he.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_he.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eam_he.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip_multi.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip_multi.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_edip_multi.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eim.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eim.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_eim.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_extep.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_extep.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_extep.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw_zbl.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw_zbl.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_gw_zbl.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_lcbop.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_lcbop.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_lcbop.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_local_density.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_local_density.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_local_density.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_spline.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_spline.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_spline.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_sw_spline.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_sw_spline.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_meam_sw_spline.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_nb3b_harmonic.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_nb3b_harmonic.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_nb3b_harmonic.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_polymorphic.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_polymorphic.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_polymorphic.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_rebo.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_rebo.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_rebo.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_angle_table.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_angle_table.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_angle_table.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_mod.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_mod.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_sw_mod.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_mod.o"
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-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_mod_c.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_mod_c.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_mod_c.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_table.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_table.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_table.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_zbl.o"
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-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_tersoff_zbl.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/MANYBODY/pair_threebody_table.o"
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-	@echo "... Users/ngoccuongnguyen/lammps/src/MOLECULE/atom_vec_template.o"
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-	@echo "... Users/ngoccuongnguyen/lammps/src/MOLECULE/bond_harmonic.o"
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-	@echo "... Users/ngoccuongnguyen/lammps/src/read_dump.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/read_restart.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/read_restart.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/read_restart.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reader.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reader.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reader.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reader_native.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reader_native.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reader_native.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reader_xyz.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reader_xyz.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reader_xyz.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_block.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_block.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_block.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_cone.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_cone.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_cone.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_cylinder.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_cylinder.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_cylinder.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_deprecated.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_deprecated.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_deprecated.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_ellipsoid.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_ellipsoid.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_ellipsoid.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_intersect.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_intersect.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_intersect.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_plane.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_plane.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_plane.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_prism.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_prism.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_prism.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_sphere.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_sphere.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_sphere.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_union.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_union.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/region_union.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/replicate.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/replicate.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/replicate.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/rerun.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/rerun.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/rerun.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reset_atom_ids.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reset_atom_ids.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reset_atom_ids.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reset_mol_ids.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reset_mol_ids.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/reset_mol_ids.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/respa.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/respa.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/respa.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/run.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/run.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/run.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/set.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/set.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/set.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/special.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/special.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/special.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/table_file_reader.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/table_file_reader.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/table_file_reader.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/tabular_function.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/tabular_function.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/tabular_function.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/text_file_reader.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/text_file_reader.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/text_file_reader.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/thermo.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/thermo.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/thermo.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/timer.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/timer.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/timer.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/tokenizer.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/tokenizer.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/tokenizer.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/universe.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/universe.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/universe.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/update.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/update.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/update.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/utils.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/utils.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/utils.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/variable.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/variable.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/variable.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/velocity.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/velocity.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/velocity.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/verlet.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/verlet.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/verlet.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_coeff.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_coeff.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_coeff.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_data.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_data.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_data.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_dump.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_dump.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_dump.s"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_restart.o"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_restart.i"
-	@echo "... Users/ngoccuongnguyen/lammps/src/write_restart.s"
-.PHONY : help
+	@if [ "$(HAS_BASH)" == "NO" ] ; then echo "bash was not found at $(OSHELL)! Please use: $(MAKE) SHELL=/path/to/bash" 1>&2; exit 1; fi
+	@echo "Please use \`make <target>' where <target> is one of"
+	@echo "  html          create HTML pages in html dir"
+	@echo "  pdf           create Manual.pdf in this dir"
+	@echo "  epub          create ePUB format manual for e-book readers"
+	@echo "  mobi          convert ePUB to MOBI format manual for e-book readers (e.g. Kindle)"
+	@echo "                      (requires ebook-convert tool from calibre)"
+	@echo "  fasthtml      approximate HTML page creation in fasthtml dir (for development)"
+	@echo "  clean         remove all intermediate files"
+	@echo "  clean-all     reset the entire build environment"
+	@echo "  anchor_check  scan for duplicate anchor labels"
+	@echo "  style_check   check for complete and consistent style lists"
+	@echo "  package_check check for complete and consistent package lists"
+	@echo "  spelling      spell-check the manual"
 
+# ------------------------------------------
 
+clean-all: clean
+	rm -rf $(BUILDDIR)/docenv $(MATHJAX) $(BUILDDIR)/LAMMPS.mobi $(BUILDDIR)/LAMMPS.epub $(BUILDDIR)/Manual.pdf
 
-#=============================================================================
-# Special targets to cleanup operation of make.
+clean: clean-spelling
+	rm -rf $(BUILDDIR)/html $(BUILDDIR)/epub $(BUILDDIR)/latex $(BUILDDIR)/doctrees $(BUILDDIR)/doxygen/xml $(BUILDDIR)/doxygen-warn.log $(BUILDDIR)/doxygen/Doxyfile $(SPHINXCONFIG)/conf.py $(BUILDDIR)/fasthtml
 
-# Special rule to run CMake to check the build system integrity.
-# No rule that depends on this can have commands that come from listfiles
-# because they might be regenerated.
-cmake_check_build_system:
-	$(CMAKE_COMMAND) -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) --check-build-system CMakeFiles/Makefile.cmake 0
-.PHONY : cmake_check_build_system
+clean-spelling:
+	rm -rf $(BUILDDIR)/spelling
 
+$(SPHINXCONFIG)/conf.py: $(SPHINXCONFIG)/conf.py.in
+	sed -e 's,@DOXYGEN_XML_DIR@,$(BUILDDIR)/doxygen/xml,g'   \
+	    -e 's,@LAMMPS_SOURCE_DIR@,$(BUILDDIR)/../src,g'    \
+	    -e 's,@LAMMPS_PYTHON_DIR@,$(BUILDDIR)/../python,g' \
+	    -e 's,@LAMMPS_DOC_DIR@,$(BUILDDIR),g' $< > $@
+
+html: xmlgen $(VENV) $(SPHINXCONFIG)/conf.py $(ANCHORCHECK) $(MATHJAX)
+	@if [ "$(HAS_BASH)" == "NO" ] ; then echo "bash was not found at $(OSHELL)! Please use: $(MAKE) SHELL=/path/to/bash" 1>&2; exit 1; fi
+	@$(MAKE) $(MFLAGS) -C graphviz all
+	@(\
+		. $(VENV)/bin/activate ; env PYTHONWARNINGS= \
+		sphinx-build $(SPHINXEXTRA) -b html -c $(SPHINXCONFIG) -d $(BUILDDIR)/doctrees $(RSTDIR) html ;\
+		ln -sf Manual.html html/index.html;\
+		rm -f $(BUILDDIR)/doxygen/xml/run.stamp;\
+		echo "############################################" ;\
+		rst_anchor_check src/*.rst ;\
+		python $(BUILDDIR)/utils/check-packages.py -s ../src -d src ;\
+		env LC_ALL=C grep -n '[^ -~]' $(RSTDIR)/*.rst ;\
+		python $(BUILDDIR)/utils/check-styles.py -s ../src -d src ;\
+		echo "############################################" ;\
+		deactivate ;\
+	)
+	@rm -rf html/_sources
+	@rm -rf html/PDF
+	@rm -rf html/USER
+	@rm -rf html/JPG
+	@cp -r src/PDF html/PDF
+	@rm -rf html/PDF/.[sg]*
+	@echo "Build finished. The HTML pages are in doc/html."
+
+fasthtml: xmlgen $(VENV) $(SPHINXCONFIG)/conf.py $(ANCHORCHECK) $(MATHJAX)
+	@if [ "$(HAS_BASH)" == "NO" ] ; then echo "bash was not found at $(OSHELL)! Please use: $(MAKE) SHELL=/path/to/bash" 1>&2; exit 1; fi
+	@$(MAKE) $(MFLAGS) -C graphviz all
+	@mkdir -p fasthtml
+	@(\
+		. $(VENV)/bin/activate ; env PYTHONWARNINGS= \
+		sphinx-build -j 4 -b html -c $(SPHINXCONFIG) -d $(BUILDDIR)/fasthtml/doctrees $(RSTDIR) fasthtml ;\
+		deactivate ;\
+	)
+	@rm -rf fasthtml/_sources
+	@rm -rf fasthtml/PDF
+	@rm -rf fasthtml/USER
+	@rm -rf fasthtml/JPG
+	@cp -r src/PDF fasthtml/PDF
+	@rm -rf fasthtml/PDF/.[sg]*
+	@echo "Fast HTML build finished. The HTML pages are in doc/fasthtml."
+
+spelling: xmlgen $(SPHINXCONFIG)/conf.py $(VENV) $(SPHINXCONFIG)/false_positives.txt
+	@if [ "$(HAS_BASH)" == "NO" ] ; then echo "bash was not found at $(OSHELL)! Please use: $(MAKE) SHELL=/path/to/bash" 1>&2; exit 1; fi
+	@(\
+		. $(VENV)/bin/activate ; env PYTHONWARNINGS= \
+		cp $(SPHINXCONFIG)/false_positives.txt $(RSTDIR)/ ; env PYTHONWARNINGS= \
+		sphinx-build -b spelling -c $(SPHINXCONFIG) -d $(BUILDDIR)/doctrees $(RSTDIR) spelling ;\
+		rm -f $(BUILDDIR)/doxygen/xml/run.stamp;\
+		deactivate ;\
+	)
+	@echo "Spell check finished."
+
+epub: xmlgen $(VENV) $(SPHINXCONFIG)/conf.py $(ANCHORCHECK)
+	@if [ "$(HAS_BASH)" == "NO" ] ; then echo "bash was not found at $(OSHELL)! Please use: $(MAKE) SHELL=/path/to/bash" 1>&2; exit 1; fi
+	@$(MAKE) $(MFLAGS) -C graphviz all
+	@mkdir -p epub/JPG
+	@rm -f LAMMPS.epub
+	@cp src/JPG/*.* epub/JPG
+	@(\
+		. $(VENV)/bin/activate ;\
+		sphinx-build $(SPHINXEXTRA) -b epub -c $(SPHINXCONFIG) -d $(BUILDDIR)/doctrees $(RSTDIR) epub ;\
+		rm -f $(BUILDDIR)/doxygen/xml/run.stamp;\
+		deactivate ;\
+	)
+	@mv  epub/LAMMPS.epub .
+	@rm -rf epub
+	@echo "Build finished. The ePUB manual file is created."
+
+mobi: epub
+	@rm -f LAMMPS.mobi
+	@ebook-convert LAMMPS.epub LAMMPS.mobi
+	@echo "Conversion finished. The MOBI manual file is created."
+
+pdf: xmlgen $(VENV) $(SPHINXCONFIG)/conf.py $(ANCHORCHECK)
+	@if [ "$(HAS_BASH)" == "NO" ] ; then echo "bash was not found at $(OSHELL)! Please use: $(MAKE) SHELL=/path/to/bash" 1>&2; exit 1; fi
+	@$(MAKE) $(MFLAGS) -C graphviz all
+	@if [ "$(HAS_PDFLATEX)" == "NO" ] ; then echo "PDFLaTeX or latexmk were not found! Please check README for further instructions" 1>&2; exit 1; fi
+	@(\
+		. $(VENV)/bin/activate ; env PYTHONWARNINGS= \
+		sphinx-build $(SPHINXEXTRA) -b latex -c $(SPHINXCONFIG) -d $(BUILDDIR)/doctrees $(RSTDIR) latex ;\
+		rm -f $(BUILDDIR)/doxygen/xml/run.stamp;\
+		echo "############################################" ;\
+		rst_anchor_check src/*.rst ;\
+		python utils/check-packages.py -s ../src -d src ;\
+		env LC_ALL=C grep -n '[^ -~]' $(RSTDIR)/*.rst ;\
+		python utils/check-styles.py -s ../src -d src ;\
+		echo "############################################" ;\
+		deactivate ;\
+	)
+	@cd latex && \
+		sed 's/\\begin{equation}//g' LAMMPS.tex > tmp.tex && \
+		mv tmp.tex LAMMPS.tex && \
+		sed 's/\\end{equation}//g' LAMMPS.tex > tmp.tex && \
+		mv tmp.tex LAMMPS.tex && \
+		sed 's/\\contentsname}{.*}}/\\contentsname}{LAMMPS Documentation}}/g' LAMMPS.tex > tmp.tex && \
+		mv tmp.tex LAMMPS.tex && \
+		$(MAKE) $(MFLAGS) && \
+		mv LAMMPS.pdf ../Manual.pdf && \
+		cd ../;
+	@rm -rf latex/_sources
+	@rm -rf latex/PDF
+	@rm -rf latex/USER
+	@cp -r src/PDF latex/PDF
+	@rm -rf latex/PDF/.[sg]*
+	@echo "Build finished. Manual.pdf is in this directory."
+
+anchor_check : $(ANCHORCHECK)
+	@(\
+		. $(VENV)/bin/activate ;\
+		rst_anchor_check src/*.rst ;\
+		deactivate ;\
+	)
+
+style_check : $(VENV)
+	@(\
+		. $(VENV)/bin/activate ;\
+		python utils/check-styles.py -s ../src -d src ;\
+		deactivate ;\
+	)
+
+package_check : $(VENV)
+	@(\
+		. $(VENV)/bin/activate ;\
+		python utils/check-packages.py -s ../src -d src ;\
+		deactivate ;\
+	)
+
+char_check :
+	@( env LC_ALL=C grep -n '[^ -~]' $(RSTDIR)/*.rst && exit 1 || : )
+
+xmlgen : doxygen/xml/index.xml
+
+doxygen/Doxyfile: doxygen/Doxyfile.in
+	sed -e 's/@LAMMPS_SOURCE_DIR@/..\/..\/src/g' $< > $@
+
+doxygen/xml/index.xml : $(VENV) doxygen/Doxyfile $(DOXYFILES)
+	@(cd doxygen; $(DOXYGEN) Doxyfile && touch xml/run.stamp)
+# ------------------------------------------
+
+$(VENV):
+	@if [ "$(HAS_BASH)" == "NO" ] ; then echo "bash was not found at $(OSHELL)! Please use: $(MAKE) SHELL=/path/to/bash" 1>&2; exit 1; fi
+	@if [ "$(HAS_PYTHON3)" == "NO" ] ; then echo "python3 was not found! Please see README for further instructions" 1>&2; exit 1; fi
+	@if [ "$(HAS_DOXYGEN)" == "NO" ] ; then echo "doxygen was not found! Please see README for further instructions" 1>&2; exit 1; fi
+	@( \
+		$(PYTHON) -m venv $(VENV); \
+		. $(VENV)/bin/activate; \
+		pip $(PIP_OPTIONS) install --upgrade pip; \
+		pip $(PIP_OPTIONS) install --upgrade wheel; \
+		pip $(PIP_OPTIONS) install -r $(BUILDDIR)/utils/requirements.txt; \
+		deactivate;\
+	)
+
+$(MATHJAX):
+	@git clone -b $(MATHJAXTAG) -c advice.detachedHead=0 --depth 1 https://github.com/mathjax/MathJax.git $@
+
+$(ANCHORCHECK): $(VENV)
+	@( \
+		. $(VENV)/bin/activate; \
+		(cd utils/converters;\
+		python setup.py develop);\
+		deactivate;\
+	)
diff --git a/doc/cmake_install.cmake b/doc/cmake_install.cmake
deleted file mode 100644
index f6307123b1..0000000000
--- a/doc/cmake_install.cmake
+++ /dev/null
@@ -1,279 +0,0 @@
-# Install script for directory: /Users/ngoccuongnguyen/lammps/cmake
-
-# Set the install prefix
-if(NOT DEFINED CMAKE_INSTALL_PREFIX)
-  set(CMAKE_INSTALL_PREFIX "/Users/ngoccuongnguyen/.local")
-endif()
-string(REGEX REPLACE "/$" "" CMAKE_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}")
-
-# Set the install configuration name.
-if(NOT DEFINED CMAKE_INSTALL_CONFIG_NAME)
-  if(BUILD_TYPE)
-    string(REGEX REPLACE "^[^A-Za-z0-9_]+" ""
-           CMAKE_INSTALL_CONFIG_NAME "${BUILD_TYPE}")
-  else()
-    set(CMAKE_INSTALL_CONFIG_NAME "RelWithDebInfo")
-  endif()
-  message(STATUS "Install configuration: \"${CMAKE_INSTALL_CONFIG_NAME}\"")
-endif()
-
-# Set the component getting installed.
-if(NOT CMAKE_INSTALL_COMPONENT)
-  if(COMPONENT)
-    message(STATUS "Install component: \"${COMPONENT}\"")
-    set(CMAKE_INSTALL_COMPONENT "${COMPONENT}")
-  else()
-    set(CMAKE_INSTALL_COMPONENT)
-  endif()
-endif()
-
-# Is this installation the result of a crosscompile?
-if(NOT DEFINED CMAKE_CROSSCOMPILING)
-  set(CMAKE_CROSSCOMPILING "FALSE")
-endif()
-
-# Set default install directory permissions.
-if(NOT DEFINED CMAKE_OBJDUMP)
-  set(CMAKE_OBJDUMP "/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/objdump")
-endif()
-
-if("x${CMAKE_INSTALL_COMPONENT}x" STREQUAL "xUnspecifiedx" OR NOT CMAKE_INSTALL_COMPONENT)
-  file(INSTALL DESTINATION "${CMAKE_INSTALL_PREFIX}/bin" TYPE EXECUTABLE FILES "/Users/ngoccuongnguyen/lammps/doc/lmp")
-  if(EXISTS "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/bin/lmp" AND
-     NOT IS_SYMLINK "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/bin/lmp")
-    execute_process(COMMAND /opt/local/bin/install_name_tool
-      -delete_rpath "/Users/ngoccuongnguyen/lammps/doc"
-      "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/bin/lmp")
-    if(CMAKE_INSTALL_DO_STRIP)
-      execute_process(COMMAND "/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/strip" -u -r "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/bin/lmp")
-    endif()
-  endif()
-endif()
-
-if("x${CMAKE_INSTALL_COMPONENT}x" STREQUAL "xUnspecifiedx" OR NOT CMAKE_INSTALL_COMPONENT)
-  file(INSTALL DESTINATION "${CMAKE_INSTALL_PREFIX}/include/lammps" TYPE FILE FILES "/Users/ngoccuongnguyen/lammps/src/angle.h")
-endif()
-
-if("x${CMAKE_INSTALL_COMPONENT}x" STREQUAL "xUnspecifiedx" OR NOT CMAKE_INSTALL_COMPONENT)
-  file(INSTALL DESTINATION "${CMAKE_INSTALL_PREFIX}/include/lammps" TYPE FILE FILES "/Users/ngoccuongnguyen/lammps/src/atom.h")
-endif()
-
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-
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-
-if("x${CMAKE_INSTALL_COMPONENT}x" STREQUAL "xUnspecifiedx" OR NOT CMAKE_INSTALL_COMPONENT)
-  file(INSTALL DESTINATION "${CMAKE_INSTALL_PREFIX}/include/lammps" TYPE FILE FILES "/Users/ngoccuongnguyen/lammps/src/update.h")
-endif()
-
-if("x${CMAKE_INSTALL_COMPONENT}x" STREQUAL "xUnspecifiedx" OR NOT CMAKE_INSTALL_COMPONENT)
-  file(INSTALL DESTINATION "${CMAKE_INSTALL_PREFIX}/include/lammps" TYPE FILE FILES "/Users/ngoccuongnguyen/lammps/src/utils.h")
-endif()
-
-if("x${CMAKE_INSTALL_COMPONENT}x" STREQUAL "xUnspecifiedx" OR NOT CMAKE_INSTALL_COMPONENT)
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-endif()
-
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-     NOT IS_SYMLINK "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/lib/liblammps.0.dylib")
-    if(CMAKE_INSTALL_DO_STRIP)
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-  endif()
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-
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-  endif()
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-
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-
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-  if(EXISTS "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/lib/cmake/LAMMPS/LAMMPS_Targets.cmake")
-    file(DIFFERENT EXPORT_FILE_CHANGED FILES
-         "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/lib/cmake/LAMMPS/LAMMPS_Targets.cmake"
-         "/Users/ngoccuongnguyen/lammps/doc/CMakeFiles/Export/lib/cmake/LAMMPS/LAMMPS_Targets.cmake")
-    if(EXPORT_FILE_CHANGED)
-      file(GLOB OLD_CONFIG_FILES "$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/lib/cmake/LAMMPS/LAMMPS_Targets-*.cmake")
-      if(OLD_CONFIG_FILES)
-        message(STATUS "Old export file \"$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/lib/cmake/LAMMPS/LAMMPS_Targets.cmake\" will be replaced.  Removing files [${OLD_CONFIG_FILES}].")
-        file(REMOVE ${OLD_CONFIG_FILES})
-      endif()
-    endif()
-  endif()
-  file(INSTALL DESTINATION "${CMAKE_INSTALL_PREFIX}/lib/cmake/LAMMPS" TYPE FILE FILES "/Users/ngoccuongnguyen/lammps/doc/CMakeFiles/Export/lib/cmake/LAMMPS/LAMMPS_Targets.cmake")
-  if("${CMAKE_INSTALL_CONFIG_NAME}" MATCHES "^([Rr][Ee][Ll][Ww][Ii][Tt][Hh][Dd][Ee][Bb][Ii][Nn][Ff][Oo])$")
-    file(INSTALL DESTINATION "${CMAKE_INSTALL_PREFIX}/lib/cmake/LAMMPS" TYPE FILE FILES "/Users/ngoccuongnguyen/lammps/doc/CMakeFiles/Export/lib/cmake/LAMMPS/LAMMPS_Targets-relwithdebinfo.cmake")
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-
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-  file(INSTALL DESTINATION "${CMAKE_INSTALL_PREFIX}/lib/cmake/LAMMPS" TYPE FILE FILES
-    "/Users/ngoccuongnguyen/lammps/doc/LAMMPSConfig.cmake"
-    "/Users/ngoccuongnguyen/lammps/doc/LAMMPSConfigVersion.cmake"
-    )
-endif()
-
-if("x${CMAKE_INSTALL_COMPONENT}x" STREQUAL "xUnspecifiedx" OR NOT CMAKE_INSTALL_COMPONENT)
-  file(INSTALL DESTINATION "${CMAKE_INSTALL_PREFIX}/share/man/man1" TYPE FILE RENAME "lmp.1" FILES "/Users/ngoccuongnguyen/lammps/doc/lammps.1")
-endif()
-
-if("x${CMAKE_INSTALL_COMPONENT}x" STREQUAL "xUnspecifiedx" OR NOT CMAKE_INSTALL_COMPONENT)
-  list(APPEND CMAKE_ABSOLUTE_DESTINATION_FILES
-   "/Users/ngoccuongnguyen/.local/share/lammps/potentials")
-  if(CMAKE_WARN_ON_ABSOLUTE_INSTALL_DESTINATION)
-    message(WARNING "ABSOLUTE path INSTALL DESTINATION : ${CMAKE_ABSOLUTE_DESTINATION_FILES}")
-  endif()
-  if(CMAKE_ERROR_ON_ABSOLUTE_INSTALL_DESTINATION)
-    message(FATAL_ERROR "ABSOLUTE path INSTALL DESTINATION forbidden (by caller): ${CMAKE_ABSOLUTE_DESTINATION_FILES}")
-  endif()
-file(INSTALL DESTINATION "/Users/ngoccuongnguyen/.local/share/lammps" TYPE DIRECTORY FILES "/Users/ngoccuongnguyen/lammps/potentials")
-endif()
-
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-  file(INSTALL DESTINATION "${CMAKE_INSTALL_PREFIX}/etc/profile.d" TYPE FILE FILES
-    "/Users/ngoccuongnguyen/lammps/doc/etc/profile.d/lammps.sh"
-    "/Users/ngoccuongnguyen/lammps/doc/etc/profile.d/lammps.csh"
-    )
-endif()
-
-if("x${CMAKE_INSTALL_COMPONENT}x" STREQUAL "xUnspecifiedx" OR NOT CMAKE_INSTALL_COMPONENT)
-  execute_process(COMMAND /usr/local/Frameworks/Python.framework/Versions/3.9/bin/python3.9 setup.py build -b /Users/ngoccuongnguyen/lammps/doc/python install --prefix=/Users/ngoccuongnguyen/.local --root=$ENV{DESTDIR}/ WORKING_DIRECTORY /Users/ngoccuongnguyen/lammps/python)
-endif()
-
-if(CMAKE_INSTALL_COMPONENT)
-  set(CMAKE_INSTALL_MANIFEST "install_manifest_${CMAKE_INSTALL_COMPONENT}.txt")
-else()
-  set(CMAKE_INSTALL_MANIFEST "install_manifest.txt")
-endif()
-
-string(REPLACE ";" "\n" CMAKE_INSTALL_MANIFEST_CONTENT
-       "${CMAKE_INSTALL_MANIFEST_FILES}")
-file(WRITE "/Users/ngoccuongnguyen/lammps/doc/${CMAKE_INSTALL_MANIFEST}"
-     "${CMAKE_INSTALL_MANIFEST_CONTENT}")
diff --git a/doc/includes/lammps/angle.h b/doc/includes/lammps/angle.h
deleted file mode 100644
index 79320a575f..0000000000
--- a/doc/includes/lammps/angle.h
+++ /dev/null
@@ -1,96 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_ANGLE_H
-#define LMP_ANGLE_H
-
-#include "pointers.h"    // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-class Angle : protected Pointers {
-  friend class ThrOMP;
-  friend class FixOMP;
-
- public:
-  int allocated;
-  int *setflag;
-  int writedata;    // 1 if writes coeffs to data file
-  int born_matrix_enable;
-  double energy;             // accumulated energies
-  double virial[6];          // accumulated virial: xx,yy,zz,xy,xz,yz
-  double *eatom, **vatom;    // accumulated per-atom energy/virial
-  double **cvatom;           // accumulated per-atom centroid virial
-
-  int centroidstressflag;    // centroid stress compared to two-body stress
-                             // CENTROID_SAME = same as two-body stress
-                             // CENTROID_AVAIL = different and implemented
-                             // CENTROID_NOTAVAIL = different, not yet implemented
-
-  int reinitflag;    // 0 if not compatible with fix adapt
-                     // extract() method may still need to be added
-
-  // KOKKOS host/device flag and data masks
-
-  ExecutionSpace execution_space;
-  unsigned int datamask_read, datamask_modify;
-  int copymode;
-
-  Angle(class LAMMPS *);
-  ~Angle() override;
-  virtual void init();
-  virtual void compute(int, int) = 0;
-  virtual void settings(int, char **);
-  virtual void coeff(int, char **) = 0;
-  virtual void init_style(){};
-  virtual double equilibrium_angle(int) = 0;
-  virtual void write_restart(FILE *) = 0;
-  virtual void read_restart(FILE *) = 0;
-  virtual void write_restart_settings(FILE *){};
-  virtual void read_restart_settings(FILE *){};
-  virtual void write_data(FILE *) {}
-  virtual double single(int, int, int, int) = 0;
-  virtual void born_matrix(int /*atype*/, int /*at1*/, int /*at2*/, int /*at3*/, double &du,
-                           double &du2)
-  {
-    du = 0.0;
-    du2 = 0.0;
-  }
-  virtual double memory_usage();
-  virtual void *extract(const char *, int &) { return nullptr; }
-  void reinit();
-
- protected:
-  int suffix_flag;    // suffix compatibility flag
-
-  int evflag;
-  int eflag_either, eflag_global, eflag_atom;
-  int vflag_either, vflag_global, vflag_atom, cvflag_atom;
-  int maxeatom, maxvatom, maxcvatom;
-
-  void ev_init(int eflag, int vflag, int alloc = 1)
-  {
-    if (eflag || vflag)
-      ev_setup(eflag, vflag, alloc);
-    else
-      evflag = eflag_either = eflag_global = eflag_atom = vflag_either = vflag_global = vflag_atom =
-          cvflag_atom = 0;
-  }
-  void ev_setup(int, int, int alloc = 1);
-  void ev_tally(int, int, int, int, int, double, double *, double *, double, double, double, double,
-                double, double);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/atom.h b/doc/includes/lammps/atom.h
deleted file mode 100644
index 499e5f0d0f..0000000000
--- a/doc/includes/lammps/atom.h
+++ /dev/null
@@ -1,427 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_ATOM_H
-#define LMP_ATOM_H
-
-#include "pointers.h"
-
-#include <map>
-#include <set>
-
-namespace LAMMPS_NS {
-
-// forward declaration
-
-class AtomVec;
-
-class Atom : protected Pointers {
- public:
-  char *atom_style;
-  AtomVec *avec;
-  enum { DOUBLE, INT, BIGINT };
-  enum { GROW = 0, RESTART = 1, BORDER = 2 };
-  enum { ATOMIC = 0, MOLECULAR = 1, TEMPLATE = 2 };
-  enum { MAP_NONE = 0, MAP_ARRAY = 1, MAP_HASH = 2, MAP_YES = 3 };
-
-  // atom counts
-
-  bigint natoms;         // total # of atoms in system, could be 0
-                         // natoms may not be current if atoms lost
-  int nlocal, nghost;    // # of owned and ghost atoms on this proc
-  int nmax;              // max # of owned+ghost in arrays on this proc
-  int tag_enable;        // 0/1 if atom ID tags are defined
-  int molecular;         // 0 = atomic, 1 = standard molecular system,
-                         // 2 = molecule template system
-  bigint nellipsoids;    // number of ellipsoids
-  bigint nlines;         // number of lines
-  bigint ntris;          // number of triangles
-  bigint nbodies;        // number of bodies
-
-  // system properties
-
-  bigint nbonds, nangles, ndihedrals, nimpropers;
-  int ntypes, nbondtypes, nangletypes, ndihedraltypes, nimpropertypes;
-  int bond_per_atom, angle_per_atom, dihedral_per_atom, improper_per_atom;
-  int extra_bond_per_atom, extra_angle_per_atom;
-  int extra_dihedral_per_atom, extra_improper_per_atom;
-
-  int firstgroup;          // store atoms in this group first, -1 if unset
-  int nfirst;              // # of atoms in first group on this proc
-  char *firstgroupname;    // group-ID to store first, null pointer if unset
-
-  // --------------------------------------------------------------------
-  // 1st customization section: customize by adding new per-atom variable
-  // per-atom vectors and arrays
-
-  tagint *tag;
-  int *type, *mask;
-  imageint *image;
-  double **x, **v, **f;
-
-  // charged and dipolar particles
-
-  double *rmass;
-  double *q, **mu;
-
-  // finite-size particles
-
-  double *radius;
-  double **omega, **angmom, **torque;
-  int *ellipsoid, *line, *tri, *body;
-  double **quat;
-
-  // molecular systems
-
-  tagint *molecule;
-  int *molindex, *molatom;
-
-  int **nspecial;      // 0,1,2 = cumulative # of 1-2,1-3,1-4 neighs
-  tagint **special;    // IDs of 1-2,1-3,1-4 neighs of each atom
-  int maxspecial;      // special[nlocal][maxspecial]
-
-  int *num_bond;
-  int **bond_type;
-  tagint **bond_atom;
-
-  int *num_angle;
-  int **angle_type;
-  tagint **angle_atom1, **angle_atom2, **angle_atom3;
-
-  int *num_dihedral;
-  int **dihedral_type;
-  tagint **dihedral_atom1, **dihedral_atom2, **dihedral_atom3, **dihedral_atom4;
-
-  int *num_improper;
-  int **improper_type;
-  tagint **improper_atom1, **improper_atom2, **improper_atom3, **improper_atom4;
-
-  // PERI package
-
-  double *vfrac, *s0;
-  double **x0;
-
-  // SPIN package
-
-  double **sp, **fm, **fm_long;
-
-  // EFF and AWPMD packages
-
-  int *spin;
-  double *eradius, *ervel, *erforce;
-  double *ervelforce;
-  double **cs, **csforce, **vforce;
-  int *etag;
-
-  // CG-DNA package
-
-  tagint *id5p;
-
-  // DPD-REACT package
-
-  double *uCond, *uMech, *uChem, *uCGnew, *uCG;
-  double *duChem;
-  double *dpdTheta;
-  int nspecies_dpd;
-
-  // MESO package
-
-  double **cc, **cc_flux;           // cc = chemical concentration
-  double *edpd_temp, *edpd_flux;    // temperature and heat flux
-  double *vest_temp;
-  double *edpd_cv;    // heat capacity
-  int cc_species;
-
-  // MESONT package
-
-  double *length;
-  int *buckling;
-  tagint **bond_nt;
-
-  // MACHDYN package
-
-  double *contact_radius;
-  double **smd_data_9;
-  double **smd_stress;
-  double *eff_plastic_strain;
-  double *eff_plastic_strain_rate;
-  double *damage;
-
-  // SPH package
-
-  double *rho, *drho, *esph, *desph, *cv;
-  double **vest;
-
-  // DIELECTRIC package
-
-  double *area, *ed, *em, *epsilon, *curvature, *q_unscaled;
-
-  // end of customization section
-  // --------------------------------------------------------------------
-
-  // --------------------------------------------------------------------
-  // 2nd customization section: customize by adding new flags
-  // identical list as Atom::set_atomflag_defaults()
-  // most are existence flags for per-atom vectors and arrays
-  // 1 if variable is used, 0 if not
-
-  int sphere_flag, ellipsoid_flag, line_flag, tri_flag, body_flag;
-  int peri_flag, electron_flag;
-  int wavepacket_flag, sph_flag;
-
-  int molecule_flag, molindex_flag, molatom_flag;
-  int q_flag, mu_flag;
-  int rmass_flag, radius_flag, omega_flag, torque_flag, angmom_flag, quat_flag;
-  int vfrac_flag, spin_flag, eradius_flag, ervel_flag, erforce_flag;
-  int cs_flag, csforce_flag, vforce_flag, ervelforce_flag, etag_flag;
-  int rho_flag, esph_flag, cv_flag, vest_flag;
-  int dpd_flag, edpd_flag, tdpd_flag;
-  int mesont_flag;
-
-  // SPIN package
-
-  int sp_flag;
-
-  // MACHDYN package
-
-  int x0_flag;
-  int smd_flag, damage_flag;
-  int contact_radius_flag, smd_data_9_flag, smd_stress_flag;
-  int eff_plastic_strain_flag, eff_plastic_strain_rate_flag;
-
-  // Peridynamics scale factor, used by dump cfg
-
-  double pdscale;
-
-  // DIELECTRIC package
-
-  int dielectric_flag;
-
-  // end of customization section
-  // --------------------------------------------------------------------
-
-  // per-atom data struct describing all per-atom vectors/arrays
-
-  struct PerAtom {
-    std::string name;
-    void *address;
-    void *address_length;
-    int *address_maxcols;
-    int datatype;
-    int cols;
-    int collength;
-    int threadflag;
-  };
-
-  std::vector<PerAtom> peratom;
-
-  // custom vectors and arrays used by fix property/atom
-
-  int **ivector, ***iarray;
-  double **dvector, ***darray;
-  int *icols, *dcols;
-  char **ivname, **dvname, **ianame, **daname;
-  int nivector, ndvector, niarray, ndarray;
-
-  // molecule templates
-  // each template can be a set of consecutive molecules
-  // each with same ID (stored in molecules)
-  // 1st molecule in template stores nset = # in set
-
-  int nmolecule;
-  class Molecule **molecules;
-
-  // extra peratom info in restart file destined for fix & diag
-
-  double **extra;
-
-  // per-type arrays
-
-  double *mass;
-  int *mass_setflag;
-
-  // callback ptrs for atom arrays managed by fix classes
-
-  int nextra_grow, nextra_restart, nextra_border;    // # of callbacks of each type
-  int *extra_grow, *extra_restart, *extra_border;    // index of fix to callback to
-  int nextra_grow_max, nextra_restart_max;           // size of callback lists
-  int nextra_border_max;
-  int nextra_store;
-
-  int map_style;                    // style of atom map: 0=none, 1=array, 2=hash
-  int map_user;                     // user requested map style:
-                                    // 0 = no request, 1=array, 2=hash, 3=yes
-  tagint map_tag_max;               // max atom ID that map() is setup for
-  std::set<tagint> *unique_tags;    // set to ensure that bodies have unique tags
-
-  // spatial sorting of atoms
-
-  int sortfreq;          // sort atoms every this many steps, 0 = off
-  bigint nextsort;       // next timestep to sort on
-  double userbinsize;    // requested sort bin size
-
-  // indices of atoms with same ID
-
-  int *sametag;    // sametag[I] = next atom with same ID, -1 if no more
-
-  // true if image flags were reset to 0 during data_atoms()
-
-  bool reset_image_flag[3];
-
-  // AtomVec factory types and map
-
-  typedef AtomVec *(*AtomVecCreator)(LAMMPS *);
-  typedef std::map<std::string, AtomVecCreator> AtomVecCreatorMap;
-  AtomVecCreatorMap *avec_map;
-
-  // --------------------------------------------------------------------
-  // functions
-
-  Atom(class LAMMPS *);
-  ~Atom() override;
-
-  void settings(class Atom *);
-  void peratom_create();
-  void add_peratom(const std::string &, void *, int, int, int threadflag = 0);
-  void add_peratom_change_columns(const std::string &, int);
-  void add_peratom_vary(const std::string &, void *, int, int *, void *, int collength = 0);
-  void create_avec(const std::string &, int, char **, int);
-  virtual AtomVec *new_avec(const std::string &, int, int &);
-
-  void init();
-  void setup();
-
-  AtomVec *style_match(const char *);
-  void modify_params(int, char **);
-  void tag_check();
-  void tag_extend();
-  int tag_consecutive();
-
-  void bonus_check();
-
-  int parse_data(const char *);
-
-  void deallocate_topology();
-
-  void data_atoms(int, char *, tagint, tagint, int, int, double *);
-  void data_vels(int, char *, tagint);
-  void data_bonds(int, char *, int *, tagint, int);
-  void data_angles(int, char *, int *, tagint, int);
-  void data_dihedrals(int, char *, int *, tagint, int);
-  void data_impropers(int, char *, int *, tagint, int);
-  void data_bonus(int, char *, AtomVec *, tagint);
-  void data_bodies(int, char *, AtomVec *, tagint);
-  void data_fix_compute_variable(int, int);
-
-  virtual void allocate_type_arrays();
-  void set_mass(const char *, int, const char *, int);
-  void set_mass(const char *, int, int, double);
-  void set_mass(const char *, int, int, char **);
-  void set_mass(double *);
-  void check_mass(const char *, int);
-
-  int radius_consistency(int, double &);
-  int shape_consistency(int, double &, double &, double &);
-
-  void add_molecule(int, char **);
-  int find_molecule(char *);
-  void add_molecule_atom(class Molecule *, int, int, tagint);
-
-  void first_reorder();
-  virtual void sort();
-
-  void add_callback(int);
-  void delete_callback(const char *, int);
-  void update_callback(int);
-
-  int find_custom(const char *, int &, int &);
-  virtual int add_custom(const char *, int, int);
-  virtual void remove_custom(int, int, int);
-
-  virtual void sync_modify(ExecutionSpace, unsigned int, unsigned int) {}
-
-  void *extract(const char *);
-  int extract_datatype(const char *);
-
-  inline int *get_map_array() { return map_array; };
-  inline int get_map_size() { return map_tag_max + 1; };
-  inline int get_max_same() { return max_same; };
-  inline int get_map_maxarray() { return map_maxarray + 1; };
-
-  // NOTE: placeholder method until KOKKOS/AtomVec is refactored
-  int memcheck(const char *) { return 1; }
-
-  double memory_usage();
-
-  // functions for global to local ID mapping
-  // map lookup function inlined for efficiency
-  // return -1 if no map defined
-
-  inline int map(tagint global)
-  {
-    if (map_style == 1)
-      return map_array[global];
-    else if (map_style == 2)
-      return map_find_hash(global);
-    else
-      return -1;
-  };
-
-  virtual void map_init(int check = 1);
-  virtual void map_clear();
-  virtual void map_set();
-  void map_one(tagint, int);
-  int map_style_set();
-  virtual void map_delete();
-  int map_find_hash(tagint);
-
- protected:
-  // global to local ID mapping
-
-  int *map_array;      // direct map via array that holds map_tag_max
-  int map_maxarray;    // allocated size of map_array (1 larger than this)
-
-  struct HashElem {    // hashed map
-    tagint global;     // key to search on = global ID
-    int local;         // value associated with key = local index
-    int next;          // next entry in this bucket, -1 if last
-  };
-  int map_nhash;         // # of entries hash table can hold
-  int map_nused;         // # of actual entries in hash table
-  int map_free;          // ptr to 1st unused entry in hash table
-  int map_nbucket;       // # of hash buckets
-  int *map_bucket;       // ptr to 1st entry in each bucket
-  HashElem *map_hash;    // hash table
-
-  int max_same;    // allocated size of sametag
-
-  // spatial sorting of atoms
-
-  int nbins;                           // # of sorting bins
-  int nbinx, nbiny, nbinz;             // bins in each dimension
-  int maxbin;                          // max # of bins
-  int maxnext;                         // max size of next,permute
-  int *binhead;                        // 1st atom in each bin
-  int *next;                           // next atom in bin
-  int *permute;                        // permutation vector
-  double bininvx, bininvy, bininvz;    // inverse actual bin sizes
-  double bboxlo[3], bboxhi[3];         // bounding box of my sub-domain
-
-  void set_atomflag_defaults();
-  void setup_sort_bins();
-  int next_prime(int);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/bond.h b/doc/includes/lammps/bond.h
deleted file mode 100644
index f0207f1113..0000000000
--- a/doc/includes/lammps/bond.h
+++ /dev/null
@@ -1,106 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_BOND_H
-#define LMP_BOND_H
-
-#include "pointers.h"    // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-class Bond : protected Pointers {
-  friend class ThrOMP;
-  friend class FixOMP;
-
- public:
-  static int instance_total;    // # of Bond classes ever instantiated
-
-  int allocated;
-  int *setflag;
-  int partial_flag;          // 1 if bond type can be set to 0 and deleted
-  int writedata;             // 1 if writes coeffs to data file
-  double energy;             // accumulated energies
-  double virial[6];          // accumulated virial: xx,yy,zz,xy,xz,yz
-  double *eatom, **vatom;    // accumulated per-atom energy/virial
-
-  int born_matrix_enable;
-
-  int comm_forward;        // size of forward communication (0 if none)
-  int comm_reverse;        // size of reverse communication (0 if none)
-  int comm_reverse_off;    // size of reverse comm even if newton off
-
-  int reinitflag;    // 0 if not compatible with fix adapt
-                     // extract() method may still need to be added
-
-  // KOKKOS host/device flag and data masks
-
-  ExecutionSpace execution_space;
-  unsigned int datamask_read, datamask_modify;
-  int copymode;
-
-  Bond(class LAMMPS *);
-  ~Bond() override;
-  virtual void init();
-  virtual void init_style() {}
-  virtual void compute(int, int) = 0;
-  virtual void settings(int, char **);
-  virtual void coeff(int, char **) = 0;
-  virtual double equilibrium_distance(int) = 0;
-  virtual void write_restart(FILE *) = 0;
-  virtual void read_restart(FILE *) = 0;
-  virtual void write_restart_settings(FILE *){};
-  virtual void read_restart_settings(FILE *){};
-  virtual void write_data(FILE *) {}
-  virtual double single(int, double, int, int, double &) = 0;
-  virtual double memory_usage();
-  virtual void *extract(const char *, int &) { return nullptr; }
-  virtual void reinit();
-
-  virtual int pack_forward_comm(int, int *, double *, int, int *) { return 0; }
-  virtual void unpack_forward_comm(int, int, double *) {}
-  virtual int pack_reverse_comm(int, int, double *) { return 0; }
-  virtual void unpack_reverse_comm(int, int *, double *) {}
-
-  virtual void born_matrix(int /*btype*/, double /*rsq*/, int /*at1*/, int /*at2*/, double &du,
-                           double &du2)
-  {
-    du = 0.0;
-    du2 = 0.0;
-  }
-
-  void write_file(int, char **);
-
- protected:
-  int instance_me;    // which Bond class instantiation I am
-  int suffix_flag;    // suffix compatibility flag
-
-  int evflag;
-  int eflag_either, eflag_global, eflag_atom;
-  int vflag_either, vflag_global, vflag_atom;
-  int maxeatom, maxvatom;
-
-  void ev_init(int eflag, int vflag, int alloc = 1)
-  {
-    if (eflag || vflag)
-      ev_setup(eflag, vflag, alloc);
-    else
-      evflag = eflag_either = eflag_global = eflag_atom = vflag_either = vflag_global = vflag_atom =
-          0;
-  }
-  void ev_setup(int, int, int alloc = 1);
-  void ev_tally(int, int, int, int, double, double, double, double, double);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/citeme.h b/doc/includes/lammps/citeme.h
deleted file mode 100644
index 7a8b456eb8..0000000000
--- a/doc/includes/lammps/citeme.h
+++ /dev/null
@@ -1,42 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_CITEME_H
-#define LMP_CITEME_H
-
-#include "pointers.h"
-#include <set>
-
-namespace LAMMPS_NS {
-
-class CiteMe : protected Pointers {
- public:
-  CiteMe(class LAMMPS *, int, int, const char *);
-  ~CiteMe() override;
-  void add(const std::string &);    // register publication for output
-  void flush();                     // flush buffers to screen and logfile
-  enum { VERBOSE, TERSE };
-
- private:
-  FILE *fp;                 // explicit citation file pointer or NULL
-  std::string citefile;     // name of the explicit citation file.
-  int screen_flag;          // determine whether verbose or terse output
-  int logfile_flag;         // determine whether verbose or terse output
-  std::string scrbuffer;    // output buffer for screen
-  std::string logbuffer;    // output buffer for logfile
-  typedef std::set<std::size_t> citeset;
-  citeset *cs;    // registered set of publications
-};
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/comm.h b/doc/includes/lammps/comm.h
deleted file mode 100644
index 43fabb1b67..0000000000
--- a/doc/includes/lammps/comm.h
+++ /dev/null
@@ -1,176 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_COMM_H
-#define LMP_COMM_H
-
-#include "pointers.h"    // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-class Comm : protected Pointers {
- public:
-  int style;     // comm pattern: 0 = 6-way stencil, 1 = irregular tiling
-  int layout;    // LAYOUT_UNIFORM = equal-sized bricks
-                 // LAYOUT_NONUNIFORM = logical bricks, but diff sizes via LB
-                 // LAYOUT_TILED = general tiling, due to RCB LB
-  enum { LAYOUT_UNIFORM, LAYOUT_NONUNIFORM, LAYOUT_TILED };
-  int mode;    // 0 = single cutoff, 1 = multi-collection cutoff, 2 = multiold-type cutoff
-  enum { SINGLE, MULTI, MULTIOLD };
-
-  int me, nprocs;               // proc info
-  int ghost_velocity;           // 1 if ghost atoms have velocity, 0 if not
-  double cutghost[3];           // cutoffs used for acquiring ghost atoms
-  double cutghostuser;          // user-specified ghost cutoff (mode == SINGLE)
-  double *cutusermulti;         // per collection user ghost cutoff (mode == MULTI)
-  double *cutusermultiold;      // per type user ghost cutoff (mode == MULTIOLD)
-  int ncollections;             // # of collections known by comm, used to test if # has changed
-  int ncollections_cutoff;      // # of collections stored b cutoff/multi
-  int recv_from_partition;      // recv proc layout from this partition
-  int send_to_partition;        // send my proc layout to this partition
-                                // -1 if no recv or send
-  int other_partition_style;    // 0 = recv layout dims must be multiple of
-                                //     my layout dims
-
-  int nthreads;    // OpenMP threads per MPI process
-
-  // public settings specific to layout = UNIFORM, NONUNIFORM
-
-  int procgrid[3];                     // procs assigned in each dim of 3d grid
-  int user_procgrid[3];                // user request for procs in each dim
-  int myloc[3];                        // which proc I am in each dim
-  int procneigh[3][2];                 // my 6 neighboring procs, 0/1 = left/right
-  double *xsplit, *ysplit, *zsplit;    // fractional (0-1) sub-domain sizes
-  int ***grid2proc;                    // which proc owns i,j,k loc in 3d grid
-
-  // public settings specific to layout = TILED
-
-  int rcbnew;              // 1 if just reset by rebalance, else 0
-  double mysplit[3][2];    // fractional (0-1) bounds of my sub-domain
-  double rcbcutfrac;       // fractional RCB cut by this proc
-  int rcbcutdim;           // dimension of RCB cut
-
-  // methods
-
-  Comm(class LAMMPS *);
-  ~Comm() override;
-  // NOTE: copy_arrays is called from a constructor and must not be made virtual
-  void copy_arrays(class Comm *);
-  virtual void init();
-  void modify_params(int, char **);
-
-  void set_processors(int, char **);              // set 3d processor grid attributes
-  virtual void set_proc_grid(int outflag = 1);    // setup 3d grid of procs
-
-  double get_comm_cutoff();    // determine communication cutoff
-
-  virtual void setup() = 0;                        // setup 3d comm pattern
-  virtual void forward_comm(int dummy = 0) = 0;    // forward comm of atom coords
-  virtual void reverse_comm() = 0;                 // reverse comm of forces
-  virtual void exchange() = 0;                     // move atoms to new procs
-  virtual void borders() = 0;                      // setup list of atoms to comm
-
-  // forward/reverse comm from a Pair, Bond, Fix, Compute, Dump
-
-  virtual void forward_comm(class Pair *) = 0;
-  virtual void reverse_comm(class Pair *) = 0;
-  virtual void forward_comm(class Bond *) = 0;
-  virtual void reverse_comm(class Bond *) = 0;
-  virtual void forward_comm(class Fix *, int size = 0) = 0;
-  virtual void reverse_comm(class Fix *, int size = 0) = 0;
-  virtual void reverse_comm_variable(class Fix *) = 0;
-  virtual void forward_comm(class Compute *) = 0;
-  virtual void reverse_comm(class Compute *) = 0;
-  virtual void forward_comm(class Dump *) = 0;
-  virtual void reverse_comm(class Dump *) = 0;
-
-  // forward comm of an array
-  // exchange of info on neigh stencil
-  // set processor mapping options
-
-  virtual void forward_comm_array(int, double **) = 0;
-  virtual int exchange_variable(int, double *, double *&) = 0;
-
-  // map a point to a processor, based on current decomposition
-
-  virtual void coord2proc_setup() {}
-  virtual int coord2proc(double *, int &, int &, int &);
-
-  // partition a global regular grid by proc sub-domains
-
-  void partition_grid(int, int, int, double, int &, int &, int &, int &, int &, int &);
-
-  // memory usage
-
-  virtual double memory_usage() = 0;
-
-  // non-virtual functions common to all Comm styles
-
-  void ring(int, int, void *, int, void (*)(int, char *, void *), void *, void *, int self = 1);
-  int rendezvous(int, int, char *, int, int, int *,
-                 int (*)(int, char *, int &, int *&, char *&, void *), int, char *&, int, void *,
-                 int statflag = 0);
-
-  // extract data useful to other classes
-
-  virtual void *extract(const char *, int &) { return nullptr; }
-
- protected:
-  int bordergroup;    // only communicate this group in borders
-
-  int triclinic;                   // 0 if domain is orthog, 1 if triclinic
-  int map_style;                   // non-0 if global->local mapping is done
-  int comm_x_only, comm_f_only;    // 1 if only exchange x,f in for/rev comm
-
-  int size_forward;    // # of per-atom datums in forward comm
-  int size_reverse;    // # of datums in reverse comm
-  int size_border;     // # of datums in forward border comm
-
-  int maxforward, maxreverse;     // max # of datums in forward/reverse comm
-  int maxexchange;                // max size of one exchanged atom
-  int maxexchange_atom;           // contribution to maxexchange from AtomVec
-  int maxexchange_fix;            // static contribution to maxexchange from Fixes
-  int maxexchange_fix_dynamic;    // 1 if a fix has a dynamic contribution
-  int bufextra;                   // augment send buf size for an exchange atom
-
-  int gridflag;        // option for creating 3d grid
-  int mapflag;         // option for mapping procs to 3d grid
-  char xyz[4];         // xyz mapping of procs to 3d grid
-  char *customfile;    // file with custom proc map
-  char *outfile;       // proc grid/map output file
-
-  int otherflag;            // 1 if this partition dependent on another
-  int other_style;          // style of dependency
-  int other_procgrid[3];    // proc layout of another partition
-  int other_coregrid[3];    // core layout of another partition
-  int ncores;               // # of cores per node
-  int coregrid[3];          // 3d grid of cores within a node
-  int user_coregrid[3];     // user request for cores in each dim
-  int multi_reduce;         // 1 if multi cutoff is intra-collection cutoff
-
-  void init_exchange();
-  int rendezvous_irregular(int, char *, int, int, int *,
-                           int (*)(int, char *, int &, int *&, char *&, void *), int, char *&, int,
-                           void *, int);
-  int rendezvous_all2all(int, char *, int, int, int *,
-                         int (*)(int, char *, int &, int *&, char *&, void *), int, char *&, int,
-                         void *, int);
-  void rendezvous_stats(int, int, int, int, int, int, bigint);
-
- public:
-  enum { MULTIPLE };
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/compute.h b/doc/includes/lammps/compute.h
deleted file mode 100644
index 90b88c7d1d..0000000000
--- a/doc/includes/lammps/compute.h
+++ /dev/null
@@ -1,182 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_COMPUTE_H
-#define LMP_COMPUTE_H
-
-#include "pointers.h"    // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-class Compute : protected Pointers {
-  friend class Neighbor;
-
- public:
-  // clang-format off
-  enum {
-    INVOKED_NONE    = 0,
-    INVOKED_SCALAR  = 1<<0,
-    INVOKED_VECTOR  = 1<<1,
-    INVOKED_ARRAY   = 1<<2,
-    INVOKED_PERATOM = 1<<3,
-    INVOKED_LOCAL   = 1<<4,
-  };
-  // clang-format on
-  static int instance_total;    // # of Compute classes ever instantiated
-
-  char *id, *style;
-  int igroup, groupbit;
-
-  double scalar;           // computed global scalar
-  double *vector;          // computed global vector
-  double **array;          // computed global array
-  double *vector_atom;     // computed per-atom vector
-  double **array_atom;     // computed per-atom array
-  double *vector_local;    // computed local vector
-  double **array_local;    // computed local array
-
-  int scalar_flag;                 // 0/1 if compute_scalar() function exists
-  int vector_flag;                 // 0/1 if compute_vector() function exists
-  int array_flag;                  // 0/1 if compute_array() function exists
-  int size_vector;                 // length of global vector
-  int size_array_rows;             // rows in global array
-  int size_array_cols;             // columns in global array
-  int size_vector_variable;        // 1 if vec length is unknown in advance
-  int size_array_rows_variable;    // 1 if array rows is unknown in advance
-
-  int peratom_flag;         // 0/1 if compute_peratom() function exists
-  int size_peratom_cols;    // 0 = vector, N = columns in peratom array
-
-  int local_flag;         // 0/1 if compute_local() function exists
-  int size_local_rows;    // rows in local vector or array
-  int size_local_cols;    // 0 = vector, N = columns in local array
-
-  int extscalar;    // 0/1 if global scalar is intensive/extensive
-  int extvector;    // 0/1/-1 if global vector is all int/ext/extlist
-  int *extlist;     // list of 0/1 int/ext for each vec component
-  int extarray;     // 0/1 if global array is all intensive/extensive
-
-  int tempflag;            // 1 if Compute can be used as temperature
-                           // must have both compute_scalar, compute_vector
-  int pressflag;           // 1 if Compute can be used as pressure (uses virial)
-                           // must have both compute_scalar, compute_vector
-  int pressatomflag;       // 1 if Compute calculates per-atom virial
-                           // 2 if Compute calculates per-atom centroid virial
-                           // 3 if Compute calculates both
-  int peflag;              // 1 if Compute calculates PE (uses Force energies)
-  int peatomflag;          // 1 if Compute calculates per-atom PE
-  int create_attribute;    // 1 if compute stores attributes that need
-                           // setting when a new atom is created
-
-  int tempbias;    // 0/1 if Compute temp includes self/extra bias
-
-  int timeflag;     // 1 if Compute stores list of timesteps it's called on
-  int ntime;        // # of entries in time list
-  int maxtime;      // max # of entries time list can hold
-  bigint *tlist;    // list of timesteps the Compute is called on
-
-  int invoked_flag;          // non-zero if invoked or accessed this step, 0 if not
-  bigint invoked_scalar;     // last timestep on which compute_scalar() was invoked
-  bigint invoked_vector;     // ditto for compute_vector()
-  bigint invoked_array;      // ditto for compute_array()
-  bigint invoked_peratom;    // ditto for compute_peratom()
-  bigint invoked_local;      // ditto for compute_local()
-
-  double dof;    // degrees-of-freedom for temperature
-
-  int comm_forward;           // size of forward communication (0 if none)
-  int comm_reverse;           // size of reverse communication (0 if none)
-  int dynamic_group_allow;    // 1 if can be used with dynamic group, else 0
-
-  // KOKKOS host/device flag and data masks
-
-  ExecutionSpace execution_space;
-  unsigned int datamask_read, datamask_modify;
-
-  int copymode, kokkosable;
-
-  Compute(class LAMMPS *, int, char **);
-  ~Compute() override;
-  void modify_params(int, char **);
-  virtual void reset_extra_dof();
-
-  virtual void init() = 0;
-  virtual void init_list(int, class NeighList *) {}
-  virtual void setup() {}
-  virtual double compute_scalar() { return 0.0; }
-  virtual void compute_vector() {}
-  virtual void compute_array() {}
-  virtual void compute_peratom() {}
-  virtual void compute_local() {}
-  virtual void set_arrays(int) {}
-
-  virtual int pack_forward_comm(int, int *, double *, int, int *) { return 0; }
-  virtual void unpack_forward_comm(int, int, double *) {}
-  virtual int pack_reverse_comm(int, int, double *) { return 0; }
-  virtual void unpack_reverse_comm(int, int *, double *) {}
-
-  virtual void dof_remove_pre() {}
-  virtual int dof_remove(int) { return 0; }
-  virtual void remove_bias(int, double *) {}
-  virtual void remove_bias_thr(int, double *, double *) {}
-  virtual void remove_bias_all() {}
-  virtual void reapply_bias_all() {}
-  virtual void restore_bias(int, double *) {}
-  virtual void restore_bias_thr(int, double *, double *) {}
-  virtual void restore_bias_all() {}
-
-  virtual void reset_extra_compute_fix(const char *);
-
-  virtual void lock_enable() {}
-  virtual void lock_disable() {}
-  virtual int lock_length() { return 0; }
-  virtual void lock(class Fix *, bigint, bigint) {}
-  virtual void unlock(class Fix *) {}
-
-  virtual void refresh() {}
-
-  void addstep(bigint);
-  int matchstep(bigint);
-  void clearstep();
-
-  virtual double memory_usage() { return 0.0; }
-
-  virtual void pair_setup_callback(int, int) {}
-  virtual void pair_tally_callback(int, int, int, int, double, double, double, double, double,
-                                   double)
-  {
-  }
-
- protected:
-  int instance_me;    // which Compute class instantiation I am
-
-  double natoms_temp;    // # of atoms used for temperature calculation
-  double extra_dof;      // extra DOF for temperature computes
-  int fix_dof;           // DOF due to fixes
-  int dynamic;           // recount atoms for temperature computes
-  int dynamic_user;      // user request for temp compute to be dynamic
-
-  double vbias[3];      // stored velocity bias for one atom
-  double **vbiasall;    // stored velocity bias for all atoms
-  int maxbias;          // size of vbiasall array
-
-  inline int sbmask(int j) const { return j >> SBBITS & 3; }
-
-  // private methods
-
-  void adjust_dof_fix();
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/dihedral.h b/doc/includes/lammps/dihedral.h
deleted file mode 100644
index 07e9fcba22..0000000000
--- a/doc/includes/lammps/dihedral.h
+++ /dev/null
@@ -1,90 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_DIHEDRAL_H
-#define LMP_DIHEDRAL_H
-
-#include "pointers.h"    // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-class Dihedral : protected Pointers {
-  friend class ThrOMP;
-  friend class FixOMP;
-
- public:
-  int allocated;
-  int *setflag;
-  int writedata;    // 1 if writes coeffs to data file
-  int born_matrix_enable;
-  double energy;             // accumulated energy
-  double virial[6];          // accumulated virial: xx,yy,zz,xy,xz,yz
-  double *eatom, **vatom;    // accumulated per-atom energy/virial
-  double **cvatom;           // accumulated per-atom centroid virial
-
-  int centroidstressflag;    // centroid stress compared to two-body stress
-                             // CENTROID_SAME = same as two-body stress
-                             // CENTROID_AVAIL = different and implemented
-                             // CENTROID_NOTAVAIL = different, not yet implemented
-
-  // KOKKOS host/device flag and data masks
-
-  ExecutionSpace execution_space;
-  unsigned int datamask_read, datamask_modify;
-  int copymode;
-
-  Dihedral(class LAMMPS *);
-  ~Dihedral() override;
-  virtual void init();
-  virtual void init_style() {}
-  virtual void compute(int, int) = 0;
-  virtual void settings(int, char **);
-  virtual void coeff(int, char **) = 0;
-  virtual void write_restart(FILE *) = 0;
-  virtual void read_restart(FILE *) = 0;
-  virtual void write_restart_settings(FILE *){};
-  virtual void read_restart_settings(FILE *){};
-  virtual void write_data(FILE *) {}
-  virtual double memory_usage();
-  virtual void born_matrix(int /*dtype*/, int /*at1*/, int /*at2*/, int /*at3*/, int /*at4*/,
-                           double &du, double &du2)
-  {
-    du = 0.0;
-    du2 = 0.0;
-  }
-
- protected:
-  int suffix_flag;    // suffix compatibility flag
-
-  int evflag;
-  int eflag_either, eflag_global, eflag_atom;
-  int vflag_either, vflag_global, vflag_atom, cvflag_atom;
-  int maxeatom, maxvatom, maxcvatom;
-
-  void ev_init(int eflag, int vflag, int alloc = 1)
-  {
-    if (eflag || vflag)
-      ev_setup(eflag, vflag, alloc);
-    else
-      evflag = eflag_either = eflag_global = eflag_atom = vflag_either = vflag_global = vflag_atom =
-          cvflag_atom = 0;
-  }
-  void ev_setup(int, int, int alloc = 1);
-  void ev_tally(int, int, int, int, int, int, double, double *, double *, double *, double, double,
-                double, double, double, double, double, double, double);
-  void problem(const char *, int, int, int, int, int);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/domain.h b/doc/includes/lammps/domain.h
deleted file mode 100644
index 649849e961..0000000000
--- a/doc/includes/lammps/domain.h
+++ /dev/null
@@ -1,181 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_DOMAIN_H
-#define LMP_DOMAIN_H
-
-#include "pointers.h"
-
-#include <cmath>
-#include <map>
-#include <unordered_set>
-#include <vector>
-
-namespace LAMMPS_NS {
-class Region;
-
-class Domain : protected Pointers {
- public:
-  int box_exist;                          // 0 = not yet created, 1 = exists
-  int dimension;                          // 2 = 2d, 3 = 3d
-  int nonperiodic;                        // 0 = periodic in all 3 dims
-                                          // 1 = periodic or fixed in all 6
-                                          // 2 = shrink-wrap in any of 6
-  int xperiodic, yperiodic, zperiodic;    // 0 = non-periodic, 1 = periodic
-  int periodicity[3];                     // xyz periodicity as array
-
-  int boundary[3][2];    // settings for 6 boundaries
-                         // 0 = periodic
-                         // 1 = fixed non-periodic
-                         // 2 = shrink-wrap non-periodic
-                         // 3 = shrink-wrap non-per w/ min
-
-  int triclinic;    // 0 = orthog box, 1 = triclinic
-  int tiltsmall;    // 1 if limit tilt, else 0
-
-  // orthogonal box
-
-  double xprd, yprd, zprd;                   // global box dimensions
-  double xprd_half, yprd_half, zprd_half;    // half dimensions
-  double prd[3];                             // array form of dimensions
-  double prd_half[3];                        // array form of half dimensions
-
-  // triclinic box
-  // xyzprd,xyzprd_half and prd,prd_half = same as if untilted
-
-  double prd_lamda[3];         // lamda box = (1,1,1)
-  double prd_half_lamda[3];    // lamda half box = (0.5,0.5,0.5)
-
-  // orthogonal box global bounds
-
-  double boxlo[3], boxhi[3];
-
-  // triclinic box
-  // boxlo/hi = same as if untilted
-
-  double boxlo_lamda[3], boxhi_lamda[3];    // lamda box = (0,1)
-  double boxlo_bound[3], boxhi_bound[3];    // bounding box of tilted domain
-  double corners[8][3];                     // 8 corner points
-
-  // orthogonal box & triclinic box
-
-  double minxlo, minxhi;    // minimum size of global box
-  double minylo, minyhi;    // when shrink-wrapping
-  double minzlo, minzhi;    // tri only possible for non-skew dims
-
-  // orthogonal box
-
-  double sublo[3], subhi[3];    // sub-box bounds on this proc
-
-  // triclinic box
-  // sublo/hi = undefined
-
-  double sublo_lamda[3], subhi_lamda[3];    // bounds of subbox in lamda
-
-  // triclinic box
-
-  double xy, xz, yz;                // 3 tilt factors
-  double h[6], h_inv[6];            // shape matrix in Voigt ordering
-                                    // Voigt = xx,yy,zz,yz,xz,xy
-  double h_rate[6], h_ratelo[3];    // rate of box size/shape change
-
-  int box_change;           // 1 if any of next 3 flags are set, else 0
-  int box_change_size;      // 1 if box size changes, 0 if not
-  int box_change_shape;     // 1 if box shape changes, 0 if not
-  int box_change_domain;    // 1 if proc sub-domains change, 0 if not
-
-  int deform_flag;        // 1 if fix deform exist, else 0
-  int deform_vremap;      // 1 if fix deform remaps v, else 0
-  int deform_groupbit;    // atom group to perform v remap for
-
-  class Lattice *lattice;    // user-defined lattice
-
-  int copymode;
-  enum { NO_REMAP, X_REMAP, V_REMAP };
-
-  typedef Region *(*RegionCreator)(LAMMPS *, int, char **);
-  typedef std::map<std::string, RegionCreator> RegionCreatorMap;
-  RegionCreatorMap *region_map;
-
-  Domain(class LAMMPS *);
-  ~Domain() override;
-  virtual void init();
-  void set_initial_box(int expandflag = 1);
-  virtual void set_global_box();
-  virtual void set_lamda_box();
-  virtual void set_local_box();
-  virtual void reset_box();
-  virtual void pbc();
-  void image_check();
-  void box_too_small_check();
-  void subbox_too_small_check(double);
-  void minimum_image(double &, double &, double &);
-  void minimum_image(double *);
-  void minimum_image_once(double *);
-  int closest_image(int, int);
-  int closest_image(const double *const, int);
-  void closest_image(const double *const, const double *const, double *const);
-  void remap(double *, imageint &);
-  void remap(double *);
-  void remap_near(double *, double *);
-  void unmap(double *, imageint);
-  void unmap(const double *, imageint, double *);
-  void image_flip(int, int, int);
-  int ownatom(int, double *, imageint *, int);
-
-  void set_lattice(int, char **);
-  void add_region(int, char **);
-  void delete_region(Region *);
-  void delete_region(const std::string &);
-  Region *get_region_by_id(const std::string &) const;
-  const std::vector<Region *> get_region_by_style(const std::string &) const;
-  const std::vector<Region *> get_region_list();
-  void set_boundary(int, char **, int);
-  void set_box(int, char **);
-  void print_box(const std::string &);
-  void boundary_string(char *);
-
-  virtual void lamda2x(int);
-  virtual void x2lamda(int);
-  virtual void lamda2x(double *, double *);
-  virtual void x2lamda(double *, double *);
-  int inside(double *);
-  int inside_nonperiodic(double *);
-  void x2lamda(double *, double *, double *, double *);
-  void bbox(double *, double *, double *, double *);
-  void box_corners();
-  void subbox_corners();
-  void lamda_box_corners(double *, double *);
-
-  // minimum image convention check
-  // return 1 if any distance > 1/2 of box size
-  // indicates a special neighbor is actually not in a bond,
-  //   but is a far-away image that should be treated as an unbonded neighbor
-  // inline since called from neighbor build inner loop
-
-  inline int minimum_image_check(double dx, double dy, double dz)
-  {
-    if (xperiodic && fabs(dx) > xprd_half) return 1;
-    if (yperiodic && fabs(dy) > yprd_half) return 1;
-    if (zperiodic && fabs(dz) > zprd_half) return 1;
-    return 0;
-  }
-
- protected:
-  double small[3];    // fractions of box lengths
-  std::unordered_set<Region *> regions;
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/error.h b/doc/includes/lammps/error.h
deleted file mode 100644
index 65c4b6e841..0000000000
--- a/doc/includes/lammps/error.h
+++ /dev/null
@@ -1,89 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_ERROR_H
-#define LMP_ERROR_H
-
-#include "pointers.h"
-
-#ifdef LAMMPS_EXCEPTIONS
-#include "exceptions.h"
-#endif
-
-namespace LAMMPS_NS {
-
-class Error : protected Pointers {
- public:
-  Error(class LAMMPS *);
-
-  [[noreturn]] void universe_all(const std::string &, int, const std::string &);
-  [[noreturn]] void universe_one(const std::string &, int, const std::string &);
-  void universe_warn(const std::string &, int, const std::string &);
-
-  [[noreturn]] void all(const std::string &, int, const std::string &);
-  template <typename S, typename... Args>
-  void all(const std::string &file, int line, const S &format, Args &&...args)
-  {
-    _all(file, line, format, fmt::make_args_checked<Args...>(format, args...));
-  }
-
-  [[noreturn]] void one(const std::string &, int, const std::string &);
-  template <typename S, typename... Args>
-  void one(const std::string &file, int line, const S &format, Args &&...args)
-  {
-    _one(file, line, format, fmt::make_args_checked<Args...>(format, args...));
-  }
-
-  void warning(const std::string &, int, const std::string &);
-  template <typename S, typename... Args>
-  void warning(const std::string &file, int line, const S &format, Args &&...args)
-  {
-    _warning(file, line, format, fmt::make_args_checked<Args...>(format, args...));
-  }
-
-  void message(const std::string &, int, const std::string &);
-  template <typename S, typename... Args>
-  void message(const std::string &file, int line, const S &format, Args &&...args)
-  {
-    _message(file, line, format, fmt::make_args_checked<Args...>(format, args...));
-  }
-  [[noreturn]] void done(int = 0);    // 1 would be fully backwards compatible
-
-  int get_numwarn() const { return numwarn; }
-  int get_maxwarn() const { return maxwarn; }
-  void set_numwarn(int val) { numwarn = val; }
-  void set_maxwarn(int val) { maxwarn = val; }
-  void set_allwarn(int val) { allwarn = val; }
-
-#ifdef LAMMPS_EXCEPTIONS
-  std::string get_last_error() const;
-  ErrorType get_last_error_type() const;
-  void set_last_error(const std::string &msg, ErrorType type = ERROR_NORMAL);
-
- private:
-  std::string last_error_message;
-  ErrorType last_error_type;
-#endif
-
- private:
-  int numwarn, maxwarn, allwarn;
-  // internal versions that accept explicit fmtlib arguments
-  [[noreturn]] void _all(const std::string &, int, fmt::string_view, fmt::format_args args);
-  [[noreturn]] void _one(const std::string &, int, fmt::string_view, fmt::format_args args);
-  void _warning(const std::string &, int, fmt::string_view, fmt::format_args args);
-  void _message(const std::string &, int, fmt::string_view, fmt::format_args args);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/exceptions.h b/doc/includes/lammps/exceptions.h
deleted file mode 100644
index f10f4ecf89..0000000000
--- a/doc/includes/lammps/exceptions.h
+++ /dev/null
@@ -1,46 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_EXCEPTIONS_H
-#define LMP_EXCEPTIONS_H
-
-#include <exception>
-#include <mpi.h>
-#include <string>
-
-namespace LAMMPS_NS {
-
-class LAMMPSException : public std::exception {
- public:
-  std::string message;
-
-  LAMMPSException(const std::string &msg) : message(msg) {}
-
-  const char *what() const noexcept override { return message.c_str(); }
-};
-
-class LAMMPSAbortException : public LAMMPSException {
- public:
-  MPI_Comm universe;
-
-  LAMMPSAbortException(const std::string &msg, MPI_Comm _universe) :
-      LAMMPSException(msg), universe(_universe)
-  {
-  }
-};
-
-enum ErrorType { ERROR_NONE = 0, ERROR_NORMAL = 1, ERROR_ABORT = 2 };
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/fix.h b/doc/includes/lammps/fix.h
deleted file mode 100644
index 41a30d2d60..0000000000
--- a/doc/includes/lammps/fix.h
+++ /dev/null
@@ -1,319 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_FIX_H
-#define LMP_FIX_H
-
-#include "pointers.h"    // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-class Fix : protected Pointers {
-  friend class Neighbor;
-
- public:
-  static int instance_total;    // # of Fix classes ever instantiated
-
-  char *id, *style;
-  int igroup, groupbit;
-
-  int restart_global;      // 1 if Fix saves global state, 0 if not
-  int restart_peratom;     // 1 if Fix saves peratom state, 0 if not
-  int restart_file;        // 1 if Fix writes own restart file, 0 if not
-  int force_reneighbor;    // 1 if Fix forces reneighboring, 0 if not
-
-  int box_change;    // >0 if Fix changes box size, shape, or sub-domains, 0 if not
-  // clang-format off
-  enum {
-    NO_BOX_CHANGE     = 0,
-    BOX_CHANGE_ANY    = 1 << 0,
-    BOX_CHANGE_DOMAIN = 1 << 1,
-    BOX_CHANGE_X      = 1 << 2,
-    BOX_CHANGE_Y      = 1 << 3,
-    BOX_CHANGE_Z      = 1 << 4,
-    BOX_CHANGE_YZ     = 1 << 5,
-    BOX_CHANGE_XZ     = 1 << 6,
-    BOX_CHANGE_XY     = 1 << 7,
-    BOX_CHANGE_SIZE   = BOX_CHANGE_X  | BOX_CHANGE_Y  | BOX_CHANGE_Z,
-    BOX_CHANGE_SHAPE  = BOX_CHANGE_YZ | BOX_CHANGE_XZ | BOX_CHANGE_XY
-  };
-  // clang-format on
-
-  bigint next_reneighbor;      // next timestep to force a reneighboring
-  int nevery;                  // how often to call an end_of_step fix
-  int thermo_energy;           // 1 if fix_modify energy enabled, 0 if not
-  int thermo_virial;           // 1 if fix_modify virial enabled, 0 if not
-  int energy_global_flag;      // 1 if contributes to global eng
-  int energy_peratom_flag;     // 1 if contributes to peratom eng
-  int virial_global_flag;      // 1 if contributes to global virial
-  int virial_peratom_flag;     // 1 if contributes to peratom virial
-  int ecouple_flag;            // 1 if thermostat fix outputs cumulative
-                               //      reservoir energy via compute_scalar()
-  int time_integrate;          // 1 if performs time integration, 0 if no
-  int rigid_flag;              // 1 if integrates rigid bodies, 0 if not
-  int no_change_box;           // 1 if cannot swap ortho <-> triclinic
-  int time_depend;             // 1 if requires continuous timestepping
-  int create_attribute;        // 1 if fix stores attributes that need
-                               //      setting when a new atom is created
-  int restart_pbc;             // 1 if fix moves atoms (except integrate)
-                               //      so write_restart must remap to PBC
-  int wd_header;               // # of header values fix writes to data file
-  int wd_section;              // # of sections fix writes to data file
-  int dynamic_group_allow;     // 1 if can be used with dynamic group, else 0
-  int dof_flag;                // 1 if has dof() method (not min_dof())
-  int special_alter_flag;      // 1 if has special_alter() meth for spec lists
-  int enforce2d_flag;          // 1 if has enforce2d method
-  int respa_level_support;     // 1 if fix supports fix_modify respa
-  int respa_level;             // which respa level to apply fix (1-Nrespa)
-  int maxexchange;             // max # of per-atom values for Comm::exchange()
-  int maxexchange_dynamic;     // 1 if fix sets maxexchange dynamically
-  int pre_exchange_migrate;    // 1 if fix migrates atoms in pre_exchange()
-  int stores_ids;              // 1 if fix stores atom IDs
-
-  int scalar_flag;                 // 0/1 if compute_scalar() function exists
-  int vector_flag;                 // 0/1 if compute_vector() function exists
-  int array_flag;                  // 0/1 if compute_array() function exists
-  int size_vector;                 // length of global vector
-  int size_array_rows;             // rows in global array
-  int size_array_cols;             // columns in global array
-  int size_vector_variable;        // 1 if vec length is unknown in advance
-  int size_array_rows_variable;    // 1 if array rows is unknown in advance
-  int global_freq;                 // frequency s/v data is available at
-
-  int peratom_flag;         // 0/1 if per-atom data is stored
-  int size_peratom_cols;    // 0 = vector, N = columns in peratom array
-  int peratom_freq;         // frequency per-atom data is available at
-
-  int local_flag;         // 0/1 if local data is stored
-  int size_local_rows;    // rows in local vector or array
-  int size_local_cols;    // 0 = vector, N = columns in local array
-  int local_freq;         // frequency local data is available at
-
-  int extscalar;    // 0/1 if global scalar is intensive/extensive
-  int extvector;    // 0/1/-1 if global vector is all int/ext/extlist
-  int *extlist;     // list of 0/1 int/ext for each vec component
-  int extarray;     // 0/1 if global array is intensive/extensive
-
-  double *vector_atom;     // computed per-atom vector
-  double **array_atom;     // computed per-atom array
-  double *vector_local;    // computed local vector
-  double **array_local;    // computed local array
-
-  int comm_forward;    // size of forward communication (0 if none)
-  int comm_reverse;    // size of reverse communication (0 if none)
-  int comm_border;     // size of border communication (0 if none)
-
-  double virial[6];          // virial for this timestep
-  double *eatom, **vatom;    // per-atom energy/virial for this timestep
-  double **cvatom;           // per-atom centroid virial for this timestep
-
-  int centroidstressflag;    // centroid stress compared to two-body stress
-                             // CENTROID_SAME = same as two-body stress
-                             // CENTROID_AVAIL = different and implemented
-                             // CENTROID_NOTAVAIL = different, not yet implemented
-
-  int restart_reset;    // 1 if restart just re-initialized fix
-
-  // KOKKOS host/device flag and data masks
-
-  int kokkosable;             // 1 if Kokkos fix
-  int forward_comm_device;    // 1 if forward comm on Device
-  ExecutionSpace execution_space;
-  unsigned int datamask_read, datamask_modify;
-
-  Fix(class LAMMPS *, int, char **);
-  ~Fix() override;
-  void modify_params(int, char **);
-
-  virtual int setmask() = 0;
-
-  virtual void post_constructor() {}
-  virtual void init() {}
-  virtual void init_list(int, class NeighList *) {}
-  virtual void setup(int) {}
-  virtual void setup_pre_exchange() {}
-  virtual void setup_pre_neighbor() {}
-  virtual void setup_post_neighbor() {}
-  virtual void setup_pre_force(int) {}
-  virtual void setup_pre_reverse(int, int) {}
-  virtual void min_setup(int) {}
-  virtual void initial_integrate(int) {}
-  virtual void post_integrate() {}
-  virtual void pre_exchange() {}
-  virtual void pre_neighbor() {}
-  virtual void post_neighbor() {}
-  virtual void pre_force(int) {}
-  virtual void pre_reverse(int, int) {}
-  virtual void post_force(int) {}
-  virtual void final_integrate() {}
-  virtual void end_of_step() {}
-  virtual void post_run() {}
-  virtual void write_restart(FILE *) {}
-  virtual void write_restart_file(const char *) {}
-  virtual void restart(char *) {}
-
-  virtual void grow_arrays(int) {}
-  virtual void copy_arrays(int, int, int) {}
-  virtual void set_arrays(int) {}
-  virtual void update_arrays(int, int) {}
-  virtual void set_molecule(int, tagint, int, double *, double *, double *);
-  virtual void clear_bonus() {}
-
-  virtual int pack_border(int, int *, double *) { return 0; }
-  virtual int unpack_border(int, int, double *) { return 0; }
-  virtual int pack_exchange(int, double *) { return 0; }
-  virtual int unpack_exchange(int, double *) { return 0; }
-  virtual int pack_restart(int, double *) { return 0; }
-  virtual void unpack_restart(int, int) {}
-  virtual int size_restart(int) { return 0; }
-  virtual int maxsize_restart() { return 0; }
-
-  virtual void setup_pre_force_respa(int, int) {}
-  virtual void initial_integrate_respa(int, int, int) {}
-  virtual void post_integrate_respa(int, int) {}
-  virtual void pre_force_respa(int, int, int) {}
-  virtual void post_force_respa(int, int, int) {}
-  virtual void final_integrate_respa(int, int) {}
-
-  virtual void min_pre_exchange() {}
-  virtual void min_pre_neighbor() {}
-  virtual void min_post_neighbor() {}
-  virtual void min_pre_force(int) {}
-  virtual void min_pre_reverse(int, int) {}
-  virtual void min_post_force(int) {}
-
-  virtual double min_energy(double *) { return 0.0; }
-  virtual void min_store() {}
-  virtual void min_clearstore() {}
-  virtual void min_pushstore() {}
-  virtual void min_popstore() {}
-  virtual int min_reset_ref() { return 0; }
-  virtual void min_step(double, double *) {}
-  virtual double max_alpha(double *) { return 0.0; }
-  virtual int min_dof() { return 0; }
-
-  virtual int pack_forward_comm(int, int *, double *, int, int *) { return 0; }
-  virtual void unpack_forward_comm(int, int, double *) {}
-  virtual int pack_reverse_comm_size(int, int) { return 0; }
-  virtual int pack_reverse_comm(int, int, double *) { return 0; }
-  virtual void unpack_reverse_comm(int, int *, double *) {}
-
-  virtual void pack_forward_grid(int, void *, int, int *){};
-  virtual void unpack_forward_grid(int, void *, int, int *){};
-  virtual void pack_reverse_grid(int, void *, int, int *){};
-  virtual void unpack_reverse_grid(int, void *, int, int *){};
-  virtual void pack_gather_grid(int, void *){};
-  virtual void unpack_gather_grid(int, void *, void *, int, int, int, int, int, int){};
-
-  virtual double compute_scalar() { return 0.0; }
-  virtual double compute_vector(int) { return 0.0; }
-  virtual double compute_array(int, int) { return 0.0; }
-
-  virtual int dof(int) { return 0; }
-  virtual void deform(int) {}
-  virtual void reset_target(double) {}
-  virtual void reset_dt() {}
-  virtual void enforce2d() {}
-
-  virtual void read_data_header(char *) {}
-  virtual void read_data_section(char *, int, char *, tagint) {}
-  virtual bigint read_data_skip_lines(char *) { return 0; }
-
-  virtual void write_data_header(FILE *, int) {}
-  virtual void write_data_section_size(int, int &, int &) {}
-  virtual void write_data_section_pack(int, double **) {}
-  virtual void write_data_section_keyword(int, FILE *) {}
-  virtual void write_data_section(int, FILE *, int, double **, int) {}
-
-  virtual void zero_momentum() {}
-  virtual void zero_rotation() {}
-
-  virtual void rebuild_special() {}
-
-  virtual int image(int *&, double **&) { return 0; }
-
-  virtual int modify_param(int, char **) { return 0; }
-  virtual void *extract(const char *, int &) { return nullptr; }
-
-  virtual double memory_usage() { return 0.0; }
-
- protected:
-  int instance_me;    // which Fix class instantiation I am
-
-  int evflag;
-  int eflag_either, eflag_global, eflag_atom;
-  int vflag_either, vflag_global, vflag_atom, cvflag_atom;
-  int maxeatom, maxvatom, maxcvatom;
-
-  int copymode;    // if set, do not deallocate during destruction
-                   // required when classes are used as functors by Kokkos
-
-  int dynamic;    // recount atoms for temperature computes
-
-  void ev_init(int eflag, int vflag)
-  {
-    if ((eflag && thermo_energy) || (vflag && thermo_virial))
-      ev_setup(eflag, vflag);
-    else
-      evflag = eflag_either = eflag_global = eflag_atom = vflag_either = vflag_global = vflag_atom =
-          cvflag_atom = 0;
-  }
-  void ev_setup(int, int);
-  void ev_tally(int, int *, double, double, double *);
-
-  void v_init(int vflag)
-  {
-    if (vflag && thermo_virial)
-      v_setup(vflag);
-    else
-      evflag = vflag_either = vflag_global = vflag_atom = cvflag_atom = 0;
-  }
-  void v_setup(int);
-  void v_tally(int, int *, double, double *);
-  void v_tally(int, int *, double, double *, int, int, int[][2], double *, double[][3]);
-  void v_tally(int, int *, double, double *, double[][3], double[][3], double[]);
-  void v_tally(int, double *);
-  void v_tally(int, int, double);
-};
-
-namespace FixConst {
-  enum {
-    INITIAL_INTEGRATE = 1 << 0,
-    POST_INTEGRATE = 1 << 1,
-    PRE_EXCHANGE = 1 << 2,
-    PRE_NEIGHBOR = 1 << 3,
-    POST_NEIGHBOR = 1 << 4,
-    PRE_FORCE = 1 << 5,
-    PRE_REVERSE = 1 << 6,
-    POST_FORCE = 1 << 7,
-    FINAL_INTEGRATE = 1 << 8,
-    END_OF_STEP = 1 << 9,
-    POST_RUN = 1 << 10,
-    INITIAL_INTEGRATE_RESPA = 1 << 11,
-    POST_INTEGRATE_RESPA = 1 << 12,
-    PRE_FORCE_RESPA = 1 << 13,
-    POST_FORCE_RESPA = 1 << 14,
-    FINAL_INTEGRATE_RESPA = 1 << 15,
-    MIN_PRE_EXCHANGE = 1 << 16,
-    MIN_PRE_NEIGHBOR = 1 << 17,
-    MIN_POST_NEIGHBOR = 1 << 18,
-    MIN_PRE_FORCE = 1 << 19,
-    MIN_PRE_REVERSE = 1 << 20,
-    MIN_POST_FORCE = 1 << 21,
-    MIN_ENERGY = 1 << 22
-  };
-}
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/force.h b/doc/includes/lammps/force.h
deleted file mode 100644
index d196555304..0000000000
--- a/doc/includes/lammps/force.h
+++ /dev/null
@@ -1,160 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_FORCE_H
-#define LMP_FORCE_H
-
-#include "pointers.h"
-
-#include <map>
-
-namespace LAMMPS_NS {
-class Angle;
-class Bond;
-class Dihedral;
-class Improper;
-class KSpace;
-class Pair;
-
-enum { ENERGY_NONE = 0x00, ENERGY_GLOBAL = 0x01, ENERGY_ATOM = 0x02 };
-
-// clang-format off
-enum {
-  VIRIAL_NONE     = 0x00,
-  VIRIAL_PAIR     = 0x01,
-  VIRIAL_FDOTR    = 0x02,
-  VIRIAL_ATOM     = 0x04,
-  VIRIAL_CENTROID = 0x08
-};
-// clang-format on
-
-enum { CENTROID_SAME = 0, CENTROID_AVAIL = 1, CENTROID_NOTAVAIL = 2 };
-
-class Force : protected Pointers {
- public:
-  double boltz;          // Boltzmann constant (eng/degree-K)
-  double hplanck;        // Planck's constant (energy-time)
-  double mvv2e;          // conversion of mv^2 to energy
-  double ftm2v;          // conversion of ft/m to velocity
-  double mv2d;           // conversion of mass/volume to density
-  double nktv2p;         // conversion of NkT/V to pressure
-  double qqr2e;          // conversion of q^2/r to energy
-  double qe2f;           // conversion of qE to force
-  double vxmu2f;         // conversion of vx dynamic-visc to force
-  double xxt2kmu;        // conversion of xx/t to kinematic-visc
-  double dielectric;     // dielectric constant
-  double qqrd2e;         // q^2/r to energy w/ dielectric constant
-  double e_mass;         // electron mass
-  double hhmrr2e;        // conversion of (hbar)^2/(mr^2) to energy
-  double mvh2r;          // conversion of mv/hbar to distance
-                         // hbar = h/(2*pi)
-  double angstrom;       // 1 angstrom in native units
-  double femtosecond;    // 1 femtosecond in native units
-  double qelectron;      // 1 electron charge abs() in native units
-
-  double qqr2e_lammps_real;    // different versions of this constant
-  double qqr2e_charmm_real;    // used by new CHARMM pair styles
-
-  int newton, newton_pair, newton_bond;    // Newton's 3rd law settings
-
-  Pair *pair;
-  char *pair_style;
-  char *pair_restart;
-
-  Bond *bond;
-  char *bond_style;
-
-  Angle *angle;
-  char *angle_style;
-
-  Dihedral *dihedral;
-  char *dihedral_style;
-
-  Improper *improper;
-  char *improper_style;
-
-  KSpace *kspace;
-  char *kspace_style;
-
-  typedef Pair *(*PairCreator)(LAMMPS *);
-  typedef Bond *(*BondCreator)(LAMMPS *);
-  typedef Angle *(*AngleCreator)(LAMMPS *);
-  typedef Dihedral *(*DihedralCreator)(LAMMPS *);
-  typedef Improper *(*ImproperCreator)(LAMMPS *);
-  typedef KSpace *(*KSpaceCreator)(LAMMPS *);
-
-  typedef std::map<std::string, PairCreator> PairCreatorMap;
-  typedef std::map<std::string, BondCreator> BondCreatorMap;
-  typedef std::map<std::string, AngleCreator> AngleCreatorMap;
-  typedef std::map<std::string, DihedralCreator> DihedralCreatorMap;
-  typedef std::map<std::string, ImproperCreator> ImproperCreatorMap;
-  typedef std::map<std::string, KSpaceCreator> KSpaceCreatorMap;
-
-  PairCreatorMap *pair_map;
-  BondCreatorMap *bond_map;
-  AngleCreatorMap *angle_map;
-  DihedralCreatorMap *dihedral_map;
-  ImproperCreatorMap *improper_map;
-  KSpaceCreatorMap *kspace_map;
-
-  // index [0] is not used in these arrays
-  double special_lj[4];      // 1-2, 1-3, 1-4 prefactors for LJ
-  double special_coul[4];    // 1-2, 1-3, 1-4 prefactors for Coulombics
-  int special_angle;         // 0 if defined angles are ignored
-                             // 1 if only weight 1,3 atoms if in an angle
-  int special_dihedral;      // 0 if defined dihedrals are ignored
-                             // 1 if only weight 1,4 atoms if in a dihedral
-  int special_extra;         // extra space for added bonds
-
-  Force(class LAMMPS *);
-  ~Force() override;
-  void init();
-  void setup();
-
-  void create_pair(const std::string &, int);
-  Pair *new_pair(const std::string &, int, int &);
-  Pair *pair_match(const std::string &, int, int nsub = 0);
-  char *pair_match_ptr(Pair *);
-
-  void create_bond(const std::string &, int);
-  Bond *new_bond(const std::string &, int, int &);
-  Bond *bond_match(const std::string &);
-
-  void create_angle(const std::string &, int);
-  Angle *new_angle(const std::string &, int, int &);
-  Angle *angle_match(const std::string &);
-
-  void create_dihedral(const std::string &, int);
-  Dihedral *new_dihedral(const std::string &, int, int &);
-  Dihedral *dihedral_match(const std::string &);
-
-  void create_improper(const std::string &, int);
-  Improper *new_improper(const std::string &, int, int &);
-  Improper *improper_match(const std::string &);
-
-  void create_kspace(const std::string &, int);
-  KSpace *new_kspace(const std::string &, int, int &);
-  KSpace *kspace_match(const std::string &, int);
-
-  char *store_style(const std::string &, int);
-  void set_special(int, char **);
-
-  double memory_usage();
-
- private:
-  void create_factories();
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/group.h b/doc/includes/lammps/group.h
deleted file mode 100644
index ac6a0736ac..0000000000
--- a/doc/includes/lammps/group.h
+++ /dev/null
@@ -1,84 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_GROUP_H
-#define LMP_GROUP_H
-
-#include "pointers.h"
-
-#include <map>
-
-namespace LAMMPS_NS {
-class Region;
-
-class Group : protected Pointers {
- public:
-  int ngroup;          // # of defined groups
-  char **names;        // name of each group
-  int *bitmask;        // one-bit mask for each group
-  int *inversemask;    // inverse mask for each group
-  int *dynamic;        // 1 if dynamic, 0 if not
-
-  Group(class LAMMPS *);
-  ~Group() override;
-  void assign(int, char **);                  // assign atoms to a group
-  void assign(const std::string &);           // convenience function
-  void create(const std::string &, int *);    // add flagged atoms to a group
-  int find(const std::string &);              // lookup name in list of groups
-  int find_or_create(const char *);           // lookup name or create new group
-  void write_restart(FILE *);
-  void read_restart(FILE *);
-
-  bigint count_all();             // count atoms in group all
-  bigint count(int);              // count atoms in group
-  bigint count(int, Region *);    // count atoms in group & region
-  double mass(int);               // total mass of atoms in group
-  double mass(int, Region *);
-  double charge(int);    // total charge of atoms in group
-  double charge(int, Region *);
-  void bounds(int, double *);    // bounds of atoms in group
-  void bounds(int, double *, Region *);
-  void xcm(int, double, double *);    // center-of-mass coords of group
-  void xcm(int, double, double *, Region *);
-  void vcm(int, double, double *);    // center-of-mass velocity of group
-  void vcm(int, double, double *, Region *);
-  void fcm(int, double *);    // total force on group
-  void fcm(int, double *, Region *);
-  double ke(int);    // kinetic energy of group
-  double ke(int, Region *);
-  double gyration(int, double, double *);    // radius-of-gyration of group
-  double gyration(int, double, double *, Region *);
-  void angmom(int, double *, double *);    // angular momentum of group
-  void angmom(int, double *, double *, Region *);
-  void torque(int, double *, double *);    // torque on group
-  void torque(int, double *, double *, Region *);
-  void inertia(int, double *, double[3][3]);    // inertia tensor
-  void inertia(int, double *, double[3][3], Region *);
-  void omega(double *, double[3][3], double *);    // angular velocity
-
- private:
-  int me;
-  std::map<tagint, int> *hash;
-
-  int find_unused();
-  void add_molecules(int, int);
-
-  // callback functions for ring communication
-
-  static void molring(int, char *, void *);
-  int molbit;
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/improper.h b/doc/includes/lammps/improper.h
deleted file mode 100644
index 2013c7e548..0000000000
--- a/doc/includes/lammps/improper.h
+++ /dev/null
@@ -1,90 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_IMPROPER_H
-#define LMP_IMPROPER_H
-
-#include "pointers.h"    // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-class Improper : protected Pointers {
-  friend class ThrOMP;
-  friend class FixOMP;
-
- public:
-  int allocated;
-  int *setflag;
-  int writedata;    // 1 if writes coeffs to data file
-  int born_matrix_enable;
-  double energy;             // accumulated energies
-  double virial[6];          // accumulated virial: xx,yy,zz,xy,xz,yz
-  double *eatom, **vatom;    // accumulated per-atom energy/virial
-  double **cvatom;           // accumulated per-atom centroid virial
-
-  int centroidstressflag;    // centroid stress compared to two-body stress
-                             // CENTROID_SAME = same as two-body stress
-                             // CENTROID_AVAIL = different and implemented
-                             // CENTROID_NOTAVAIL = different, not yet implemented
-
-  // KOKKOS host/device flag and data masks
-
-  ExecutionSpace execution_space;
-  unsigned int datamask_read, datamask_modify;
-  int copymode;
-
-  Improper(class LAMMPS *);
-  ~Improper() override;
-  virtual void init();
-  virtual void init_style() {}
-  virtual void compute(int, int) = 0;
-  virtual void settings(int, char **);
-  virtual void coeff(int, char **) = 0;
-  virtual void write_restart(FILE *) = 0;
-  virtual void read_restart(FILE *) = 0;
-  virtual void write_restart_settings(FILE *){};
-  virtual void read_restart_settings(FILE *){};
-  virtual void write_data(FILE *) {}
-  virtual double memory_usage();
-  virtual void born_matrix(int /*dtype*/, int /*at1*/, int /*at2*/, int /*at3*/, int /*at4*/,
-                           double &du, double &du2)
-  {
-    du = 0.0;
-    du2 = 0.0;
-  }
-
- protected:
-  int suffix_flag;    // suffix compatibility flag
-
-  int evflag;
-  int eflag_either, eflag_global, eflag_atom;
-  int vflag_either, vflag_global, vflag_atom, cvflag_atom;
-  int maxeatom, maxvatom, maxcvatom;
-
-  void ev_init(int eflag, int vflag, int alloc = 1)
-  {
-    if (eflag || vflag)
-      ev_setup(eflag, vflag, alloc);
-    else
-      evflag = eflag_either = eflag_global = eflag_atom = vflag_either = vflag_global = vflag_atom =
-          cvflag_atom = 0;
-  }
-  void ev_setup(int, int, int alloc = 1);
-  void ev_tally(int, int, int, int, int, int, double, double *, double *, double *, double, double,
-                double, double, double, double, double, double, double);
-  void problem(const char *, int, int, int, int, int);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/info.h b/doc/includes/lammps/info.h
deleted file mode 100644
index ffe1907fae..0000000000
--- a/doc/includes/lammps/info.h
+++ /dev/null
@@ -1,79 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifdef COMMAND_CLASS
-// clang-format off
-CommandStyle(info,Info);
-// clang-format on
-#else
-
-#ifndef LMP_INFO_H
-#define LMP_INFO_H
-
-#include "command.h"
-
-#include <vector>
-
-namespace LAMMPS_NS {
-
-class Info : public Command {
- public:
-  Info(class LAMMPS *lmp) : Command(lmp){};
-  void command(int, char **) override;
-
-  bool is_active(const char *, const char *);
-  bool is_defined(const char *, const char *);
-  bool is_available(const char *, const char *);
-
-  bool has_style(const std::string &category, const std::string &name);
-  std::vector<std::string> get_available_styles(const std::string &category);
-
-  static bool has_gzip_support();
-  static bool has_png_support();
-  static bool has_jpeg_support();
-  static bool has_ffmpeg_support();
-  static bool has_fft_single_support();
-  static bool has_exceptions();
-  static bool has_package(const std::string &);
-  static bool has_accelerator_feature(const std::string &, const std::string &,
-                                      const std::string &);
-  static bool has_gpu_device();
-  static std::string get_gpu_device_info();
-  static std::string get_accelerator_info(const std::string &pkg = "");
-
-  void get_memory_info(double *);
-  char **get_variable_names(int &num);
-
- private:
-  void available_styles(FILE *out, int flags);
-
-  void atom_styles(FILE *out);
-  void integrate_styles(FILE *out);
-  void minimize_styles(FILE *out);
-  void pair_styles(FILE *out);
-  void bond_styles(FILE *out);
-  void angle_styles(FILE *out);
-  void dihedral_styles(FILE *out);
-  void improper_styles(FILE *out);
-  void kspace_styles(FILE *out);
-  void fix_styles(FILE *out);
-  void compute_styles(FILE *out);
-  void region_styles(FILE *out);
-  void dump_styles(FILE *out);
-  void command_styles(FILE *out);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
-#endif
diff --git a/doc/includes/lammps/input.h b/doc/includes/lammps/input.h
deleted file mode 100644
index f54d2ea4e5..0000000000
--- a/doc/includes/lammps/input.h
+++ /dev/null
@@ -1,149 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_INPUT_H
-#define LMP_INPUT_H
-
-#include "pointers.h"
-
-#include <map>
-
-namespace LAMMPS_NS {
-class Command;
-
-class Input : protected Pointers {
-  friend class Info;
-  friend class Error;
-  friend class Deprecated;
-  friend class SimpleCommandsTest_Echo_Test;
-
- public:
-  int narg;                    // # of command args
-  char **arg;                  // parsed args for command
-  class Variable *variable;    // defined variables
-
-  Input(class LAMMPS *, int, char **);
-  ~Input() override;
-  void file();                       // process all input
-  void file(const char *);           // process an input script
-  char *one(const std::string &);    // process a single command
-  void substitute(char *&, char *&, int &, int &, int);
-  // substitute for variables in a string
-  void write_echo(const std::string &);    // send text to active echo file pointers
-
- protected:
-  char *command;      // ptr to current command
-  int echo_screen;    // 0 = no, 1 = yes
-  int echo_log;       // 0 = no, 1 = yes
-
- private:
-  int me;                           // proc ID
-  int maxarg;                       // max # of args in arg
-  char *line, *copy, *work;         // input line & copy and work string
-  int maxline, maxcopy, maxwork;    // max lengths of char strings
-  int nfile, maxfile;               // current # and max # of open input files
-  int label_active;                 // 0 = no label, 1 = looking for label
-  char *labelstr;                   // label string being looked for
-  int jump_skip;                    // 1 if skipping next jump, 0 otherwise
-  bool utf8_warn;                   // true if need to warn about UTF-8 chars
-
-  FILE **infiles;    // list of open input files
-
- public:
-  typedef Command *(*CommandCreator)(LAMMPS *);
-  typedef std::map<std::string, CommandCreator> CommandCreatorMap;
-  CommandCreatorMap *command_map;
-
- private:
-  void parse();                            // parse an input text line
-  char *nextword(char *, char **);         // find next word in string with quotes
-  int numtriple(char *);                   // count number of triple quotes
-  void reallocate(char *&, int &, int);    // reallocate a char string
-  int execute_command();                   // execute a single command
-
-  void clear();    // input script commands
-  void echo();
-  void ifthenelse();
-  void include();
-  void jump();
-  void label();
-  void log();
-  void next_command();
-  void partition();
-  void plugin();
-  void print();
-  void python();
-  void quit();
-  void shell();
-  void variable_command();
-
-  void angle_coeff();    // LAMMPS commands
-  void angle_style();
-  void atom_modify();
-  void atom_style();
-  void bond_coeff();
-  void bond_style();
-  void bond_write();
-  void boundary();
-  void box();
-  void comm_modify();
-  void comm_style();
-  void compute();
-  void compute_modify();
-  void dielectric();
-  void dihedral_coeff();
-  void dihedral_style();
-  void dimension();
-  void dump();
-  void dump_modify();
-  void fix();
-  void fix_modify();
-  void group_command();
-  void improper_coeff();
-  void improper_style();
-  void kspace_modify();
-  void kspace_style();
-  void lattice();
-  void mass();
-  void min_modify();
-  void min_style();
-  void molecule();
-  void neigh_modify();
-  void neighbor_command();
-  void newton();
-  void package();
-  void pair_coeff();
-  void pair_modify();
-  void pair_style();
-  void pair_write();
-  void processors();
-  void region();
-  void reset_timestep();
-  void restart();
-  void run_style();
-  void special_bonds();
-  void suffix();
-  void thermo();
-  void thermo_modify();
-  void thermo_style();
-  void timestep();
-  void timer_command();
-  void uncompute();
-  void undump();
-  void unfix();
-  void units();
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/kspace.h b/doc/includes/lammps/kspace.h
deleted file mode 100644
index 3dca77c3c3..0000000000
--- a/doc/includes/lammps/kspace.h
+++ /dev/null
@@ -1,222 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_KSPACE_H
-#define LMP_KSPACE_H
-
-#include "pointers.h"    // IWYU pragma: export
-
-#ifdef FFT_SINGLE
-typedef float FFT_SCALAR;
-#define MPI_FFT_SCALAR MPI_FLOAT
-#else
-typedef double FFT_SCALAR;
-#define MPI_FFT_SCALAR MPI_DOUBLE
-#endif
-
-namespace LAMMPS_NS {
-
-class KSpace : protected Pointers {
-  friend class ThrOMP;
-  friend class FixOMP;
-
- public:
-  double energy;    // accumulated energies
-  double energy_1, energy_6;
-  double virial[6];          // accumulated virial: xx,yy,zz,xy,xz,yz
-  double *eatom, **vatom;    // accumulated per-atom energy/virial
-  double e2group;            // accumulated group-group energy
-  double f2group[3];         // accumulated group-group force
-  int triclinic_support;     // 1 if supports triclinic geometries
-
-  int ewaldflag;         // 1 if a Ewald solver
-  int pppmflag;          // 1 if a PPPM solver
-  int msmflag;           // 1 if a MSM solver
-  int dispersionflag;    // 1 if a LJ/dispersion solver
-  int tip4pflag;         // 1 if a TIP4P solver
-  int dipoleflag;        // 1 if a dipole solver
-  int spinflag;          // 1 if a spin solver
-  int differentiation_flag;
-  int neighrequest_flag;    // used to avoid obsolete construction
-                            // of neighbor lists
-  int mixflag;              // 1 if geometric mixing rules are enforced
-                            // for LJ coefficients
-  bool conp_one_step;       // calculate A matrix in one step with pppm
-  int slabflag, wireflag;
-  int scalar_pressure_flag;    // 1 if using MSM fast scalar pressure
-  double slab_volfactor, wire_volfactor;
-
-  int warn_nonneutral;    // 0 = error if non-neutral system
-                          // 1 = warn once if non-neutral system
-                          // 2 = warn, but already warned
-  int warn_nocharge;      // 0 = already warned
-                          // 1 = warn if zero charge
-
-  int order, order_6, order_allocated;
-  double accuracy;             // accuracy of KSpace solver (force units)
-  double accuracy_absolute;    // user-specified accuracy in force units
-  double accuracy_relative;    // user-specified dimensionless accuracy
-                               // accuracy = acc_rel * two_charge_force
-  double accuracy_real_6;      // real space accuracy for
-                               // dispersion solver (force units)
-  double accuracy_kspace_6;    // reciprocal space accuracy for
-                               // dispersion solver (force units)
-  int auto_disp_flag;          // use automatic parameter generation for pppm/disp
-  double two_charge_force;     // force in user units of two point
-                               // charges separated by 1 Angstrom
-
-  double g_ewald, g_ewald_6;
-  int nx_pppm, ny_pppm, nz_pppm;          // global FFT grid for Coulombics
-  int nx_pppm_6, ny_pppm_6, nz_pppm_6;    // global FFT grid for dispersion
-  int nx_msm_max, ny_msm_max, nz_msm_max;
-
-  int group_group_enable;    // 1 if style supports group/group calculation
-
-  int centroidstressflag;    // centroid stress compared to two-body stress
-                             // CENTROID_SAME = same as two-body stress
-                             // CENTROID_AVAIL = different and implemented
-                             // CENTROID_NOTAVAIL = different, not yet implemented
-
-  // KOKKOS host/device flag and data masks
-
-  ExecutionSpace execution_space;
-  unsigned int datamask_read, datamask_modify;
-  int copymode;
-
-  int compute_flag;       // 0 if skip compute()
-  int fftbench;           // 0 if skip FFT timing
-  int collective_flag;    // 1 if use MPI collectives for FFT/remap
-  int stagger_flag;       // 1 if using staggered PPPM grids
-
-  double splittol;    // tolerance for when to truncate splitting
-
-  KSpace(class LAMMPS *);
-  ~KSpace() override;
-  void two_charge();
-  void triclinic_check();
-  void modify_params(int, char **);
-  void *extract(const char *);
-  void compute_dummy(int, int);
-
-  // triclinic
-
-  void x2lamdaT(double *, double *);
-  void lamda2xT(double *, double *);
-  void lamda2xvector(double *, double *);
-  void kspacebbox(double, double *);
-
-  // public so can be called by commands that change charge
-
-  void qsum_qsq(int warning_flag = 1);
-
-  // general child-class methods
-
-  virtual void settings(int, char **){};
-  virtual void init() = 0;
-  virtual void setup() = 0;
-  virtual void setup_grid(){};
-  virtual void compute(int, int) = 0;
-  virtual void compute_group_group(int, int, int){};
-
-  virtual void pack_forward_grid(int, void *, int, int *){};
-  virtual void unpack_forward_grid(int, void *, int, int *){};
-  virtual void pack_reverse_grid(int, void *, int, int *){};
-  virtual void unpack_reverse_grid(int, void *, int, int *){};
-
-  virtual int timing(int, double &, double &) { return 0; }
-  virtual int timing_1d(int, double &) { return 0; }
-  virtual int timing_3d(int, double &) { return 0; }
-
-  virtual int modify_param(int, char **) { return 0; }
-  virtual double memory_usage() { return 0.0; }
-
-  /* ----------------------------------------------------------------------
-   compute gamma for MSM and pair styles
-   see Eq 4 from Parallel Computing 35 (2009) 164-177
-------------------------------------------------------------------------- */
-
-  double gamma(const double &rho) const
-  {
-    if (rho <= 1.0) {
-      const int split_order = order / 2;
-      const double rho2 = rho * rho;
-      double g = gcons[split_order][0];
-      double rho_n = rho2;
-      for (int n = 1; n <= split_order; n++) {
-        g += gcons[split_order][n] * rho_n;
-        rho_n *= rho2;
-      }
-      return g;
-    } else
-      return (1.0 / rho);
-  }
-
-  /* ----------------------------------------------------------------------
-   compute the derivative of gamma for MSM and pair styles
-   see Eq 4 from Parallel Computing 35 (2009) 164-177
-------------------------------------------------------------------------- */
-
-  double dgamma(const double &rho) const
-  {
-    if (rho <= 1.0) {
-      const int split_order = order / 2;
-      const double rho2 = rho * rho;
-      double dg = dgcons[split_order][0] * rho;
-      double rho_n = rho * rho2;
-      for (int n = 1; n < split_order; n++) {
-        dg += dgcons[split_order][n] * rho_n;
-        rho_n *= rho2;
-      }
-      return dg;
-    } else
-      return (-1.0 / rho / rho);
-  }
-
-  double **get_gcons() { return gcons; }
-  double **get_dgcons() { return dgcons; }
-
- protected:
-  int gridflag, gridflag_6;
-  int gewaldflag, gewaldflag_6;
-  int minorder, overlap_allowed;
-  int adjust_cutoff_flag;
-  int suffix_flag;    // suffix compatibility flag
-  bigint natoms_original;
-  double scale, qqrd2e;
-  double qsum, qsqsum, q2;
-  double **gcons, **dgcons;    // accumulated per-atom energy/virial
-
-  int evflag, evflag_atom;
-  int eflag_either, eflag_global, eflag_atom;
-  int vflag_either, vflag_global, vflag_atom;
-  int maxeatom, maxvatom;
-
-  int kewaldflag;                      // 1 if kspace range set for Ewald sum
-  int kx_ewald, ky_ewald, kz_ewald;    // kspace settings for Ewald sum
-
-  void pair_check();
-  void ev_init(int eflag, int vflag, int alloc = 1)
-  {
-    if (eflag || vflag)
-      ev_setup(eflag, vflag, alloc);
-    else
-      evflag = evflag_atom = eflag_either = eflag_global = eflag_atom = vflag_either =
-          vflag_global = vflag_atom = 0;
-  }
-  void ev_setup(int, int, int alloc = 1);
-  double estimate_table_accuracy(double, double);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/lammps.h b/doc/includes/lammps/lammps.h
deleted file mode 100644
index 4f3e9cf110..0000000000
--- a/doc/includes/lammps/lammps.h
+++ /dev/null
@@ -1,101 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_LAMMPS_H
-#define LMP_LAMMPS_H
-
-#include <cstdio>
-#include <mpi.h>
-
-namespace LAMMPS_NS {
-
-class LAMMPS {
- public:
-  // ptrs to fundamental LAMMPS classes
-  class Memory *memory;            // memory allocation functions
-  class Error *error;              // error handling
-  class Universe *universe;        // universe of processors
-  class Input *input;              // input script processing
-                                   // ptrs to top-level LAMMPS-specific classes
-  class Atom *atom;                // atom-based quantities
-  class Update *update;            // integrators/minimizers
-  class Neighbor *neighbor;        // neighbor lists
-  class Comm *comm;                // inter-processor communication
-  class Domain *domain;            // simulation box
-  class Force *force;              // inter-particle forces
-  class Modify *modify;            // fixes and computes
-  class Group *group;              // groups of atoms
-  class Output *output;            // thermo/dump/restart
-  class Timer *timer;              // CPU timing info
-                                   //
-  class KokkosLMP *kokkos;         // KOKKOS accelerator class
-  class AtomKokkos *atomKK;        // KOKKOS version of Atom class
-  class MemoryKokkos *memoryKK;    // KOKKOS version of Memory class
-  class Python *python;            // Python interface
-  class CiteMe *citeme;            // handle citation info
-
-  const char *version;    // LAMMPS version string = date
-  int num_ver;            // numeric version id derived from *version*
-                          // that is constructed so that will be greater
-                          // for newer versions in numeric or string
-                          // value comparisons
-                          //
-  MPI_Comm world;         // MPI communicator
-  FILE *infile;           // infile
-  FILE *screen;           // screen output
-  FILE *logfile;          // logfile
-                          //
-  double initclock;       // wall clock at instantiation
-  int skiprunflag;        // 1 inserts timer command to skip run and minimize loops
-
-  char *suffix, *suffix2, *suffixp;    // suffixes to add to input script style names
-  int suffix_enable;                   // 1 if suffixes are enabled, 0 if disabled
-  char *exename;                       // pointer to argv[0]
-                                       //
-  char ***packargs;                    // arguments for cmdline package commands
-  int num_package;                     // number of cmdline package commands
-                                       //
-  int clientserver;                    // 0 = neither, 1 = client, 2 = server
-  void *cslib;                         // client/server messaging via CSlib
-  MPI_Comm cscomm;                     // MPI comm for client+server in mpi/one mode
-
-  const char *match_style(const char *style, const char *name);
-  static const char *installed_packages[];
-  static bool is_installed_pkg(const char *pkg);
-
-  static bool has_git_info();
-  static const char *git_commit();
-  static const char *git_branch();
-  static const char *git_descriptor();
-
-  LAMMPS(int, char **, MPI_Comm);
-  ~LAMMPS();
-  void create();
-  void post_create();
-  void init();
-  void destroy();
-  void print_config(FILE *);    // print compile time settings
-
- private:
-  struct package_styles_lists *pkg_lists;
-  void init_pkg_lists();
-  void help();
-  /// Default constructor. Declared private to prohibit its use
-  LAMMPS(){};
-  /// Copy constructor. Declared private to prohibit its use
-  LAMMPS(const LAMMPS &){};
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/lattice.h b/doc/includes/lammps/lattice.h
deleted file mode 100644
index 67b9ce61ea..0000000000
--- a/doc/includes/lammps/lattice.h
+++ /dev/null
@@ -1,62 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_LATTICE_H
-#define LMP_LATTICE_H
-
-#include "pointers.h"
-
-namespace LAMMPS_NS {
-
-class Lattice : protected Pointers {
- public:
-  enum { NONE, SC, BCC, FCC, HCP, DIAMOND, SQ, SQ2, HEX, CUSTOM };
-
-  int style;                              // NONE,SC,FCC,etc
-  double xlattice, ylattice, zlattice;    // lattice scale factors in 3 dims
-  double a1[3], a2[3], a3[3];             // edge vectors of unit cell
-  int nbasis;                             // # of basis atoms in unit cell
-  double **basis;                         // fractional coords of each basis atom
-                                          // within unit cell (0 <= coord < 1)
-
-  Lattice(class LAMMPS *, int, char **);
-  ~Lattice() override;
-  void lattice2box(double &, double &, double &);
-  void box2lattice(double &, double &, double &);
-  void bbox(int, double, double, double, double &, double &, double &, double &, double &,
-            double &);
-
- private:
-  double scale;
-  double origin[3];    // lattice origin
-  int orientx[3];      // lattice orientation vecs
-  int orienty[3];      // orientx = what lattice dir lies
-  int orientz[3];      //           along x dim in box
-
-  double primitive[3][3];    // lattice <-> box transform matrices
-  double priminv[3][3];
-  double rotaterow[3][3];
-  double rotatecol[3][3];
-
-  int orthogonal();
-  int right_handed();
-  int collinear();
-  void setup_transform();
-  void add_basis(double, double, double);
-  double dot(double *, double *);
-  void cross(double *, double *, double *);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/library.h b/doc/includes/lammps/library.h
deleted file mode 100644
index 311219e5ba..0000000000
--- a/doc/includes/lammps/library.h
+++ /dev/null
@@ -1,267 +0,0 @@
-/* -*- c -*- ------------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LAMMPS_LIBRARY_H
-#define LAMMPS_LIBRARY_H
-
-/* C style library interface to LAMMPS which allows to create and
- * control instances of the LAMMPS C++ class and exchange data with it.
- * The C bindings are the basis for the Python and Fortran modules.
- *
- * If needed, new LAMMPS-specific functions can be added to expose
- * additional LAMMPS functionality to this library interface. */
-
-/* We follow the behavior of regular LAMMPS compilation and assume
- * -DLAMMPS_SMALLBIG when no define is set. */
-
-#if !defined(LAMMPS_BIGBIG) && !defined(LAMMPS_SMALLBIG) && !defined(LAMMPS_SMALLSMALL)
-#define LAMMPS_SMALLBIG
-#endif
-
-/* To allow including the library interface without MPI */
-
-#if defined(LAMMPS_LIB_MPI)
-#include <mpi.h>
-#endif
-
-#if defined(LAMMPS_BIGBIG) || defined(LAMMPS_SMALLBIG)
-#include <stdint.h> /* for int64_t */
-#endif
-
-/** Data type constants for extracting data from atoms, computes and fixes
- *
- * Must be kept in sync with the equivalent constants in lammps/constants.py */
-
-enum _LMP_DATATYPE_CONST {
-  LAMMPS_INT = 0,       /*!< 32-bit integer (array) */
-  LAMMPS_INT_2D = 1,    /*!< two-dimensional 32-bit integer array */
-  LAMMPS_DOUBLE = 2,    /*!< 64-bit double (array) */
-  LAMMPS_DOUBLE_2D = 3, /*!< two-dimensional 64-bit double array */
-  LAMMPS_INT64 = 4,     /*!< 64-bit integer (array) */
-  LAMMPS_INT64_2D = 5,  /*!< two-dimensional 64-bit integer array */
-  LAMMPS_STRING = 6     /*!< C-String */
-};
-
-/** Style constants for extracting data from computes and fixes.
- *
- * Must be kept in sync with the equivalent constants in lammps/constants.py */
-
-enum _LMP_STYLE_CONST {
-  LMP_STYLE_GLOBAL = 0, /*!< return global data */
-  LMP_STYLE_ATOM = 1,   /*!< return per-atom data */
-  LMP_STYLE_LOCAL = 2   /*!< return local data */
-};
-
-/** Type and size constants for extracting data from computes and fixes.
- *
- * Must be kept in sync with the equivalent constants in lammps/constants.py */
-
-enum _LMP_TYPE_CONST {
-  LMP_TYPE_SCALAR = 0, /*!< return scalar */
-  LMP_TYPE_VECTOR = 1, /*!< return vector */
-  LMP_TYPE_ARRAY = 2,  /*!< return array */
-  LMP_SIZE_VECTOR = 3, /*!< return length of vector */
-  LMP_SIZE_ROWS = 4,   /*!< return number of rows */
-  LMP_SIZE_COLS = 5    /*!< return number of columns */
-};
-
-/* Ifdefs to allow this file to be included in C and C++ programs */
-
-#ifdef __cplusplus
-extern "C" {
-#endif
-
-/* ----------------------------------------------------------------------
- * Library functions to create/destroy an instance of LAMMPS
- * ---------------------------------------------------------------------- */
-
-#if defined(LAMMPS_LIB_MPI)
-void *lammps_open(int argc, char **argv, MPI_Comm comm, void **ptr);
-#endif
-void *lammps_open_no_mpi(int argc, char **argv, void **ptr);
-void *lammps_open_fortran(int argc, char **argv, int f_comm);
-void lammps_close(void *handle);
-
-void lammps_mpi_init();
-void lammps_mpi_finalize();
-void lammps_kokkos_finalize();
-void lammps_python_finalize();
-
-/* ----------------------------------------------------------------------
- * Library functions to process commands
- * ---------------------------------------------------------------------- */
-
-void lammps_file(void *handle, const char *file);
-
-char *lammps_command(void *handle, const char *cmd);
-void lammps_commands_list(void *handle, int ncmd, const char **cmds);
-void lammps_commands_string(void *handle, const char *str);
-
-/* -----------------------------------------------------------------------
- * Library functions to extract info from LAMMPS or set data in LAMMPS
- * ----------------------------------------------------------------------- */
-
-double lammps_get_natoms(void *handle);
-double lammps_get_thermo(void *handle, const char *keyword);
-
-void lammps_extract_box(void *handle, double *boxlo, double *boxhi, double *xy, double *yz,
-                        double *xz, int *pflags, int *boxflag);
-void lammps_reset_box(void *handle, double *boxlo, double *boxhi, double xy, double yz, double xz);
-
-void lammps_memory_usage(void *handle, double *meminfo);
-int lammps_get_mpi_comm(void *handle);
-
-int lammps_extract_setting(void *handle, const char *keyword);
-int lammps_extract_global_datatype(void *handle, const char *name);
-void *lammps_extract_global(void *handle, const char *name);
-
-/* ----------------------------------------------------------------------
- * Library functions to read or modify per-atom data in LAMMPS
- * ---------------------------------------------------------------------- */
-
-int lammps_extract_atom_datatype(void *handle, const char *name);
-void *lammps_extract_atom(void *handle, const char *name);
-
-/* ----------------------------------------------------------------------
- * Library functions to access data from computes, fixes, variables in LAMMPS
- * ---------------------------------------------------------------------- */
-
-void *lammps_extract_compute(void *handle, const char *, int, int);
-void *lammps_extract_fix(void *handle, const char *, int, int, int, int);
-void *lammps_extract_variable(void *handle, const char *, const char *);
-int lammps_set_variable(void *, char *, char *);
-
-/* ----------------------------------------------------------------------
- * Library functions for scatter/gather operations of data
- * ---------------------------------------------------------------------- */
-
-void lammps_gather_atoms(void *handle, char *name, int type, int count, void *data);
-void lammps_gather_atoms_concat(void *handle, char *name, int type, int count, void *data);
-void lammps_gather_atoms_subset(void *handle, char *name, int type, int count, int ndata, int *ids,
-                                void *data);
-void lammps_scatter_atoms(void *handle, char *name, int type, int count, void *data);
-void lammps_scatter_atoms_subset(void *handle, char *name, int type, int count, int ndata, int *ids,
-                                 void *data);
-
-void lammps_gather_bonds(void *handle, void *data);
-
-void lammps_gather(void *handle, char *name, int type, int count, void *data);
-void lammps_gather_concat(void *handle, char *name, int type, int count, void *data);
-void lammps_gather_subset(void *handle, char *name, int type, int count, int ndata, int *ids,
-                          void *data);
-void lammps_scatter(void *handle, char *name, int type, int count, void *data);
-void lammps_scatter_subset(void *handle, char *name, int type, int count, int ndata, int *ids,
-                           void *data);
-
-#if !defined(LAMMPS_BIGBIG)
-int lammps_create_atoms(void *handle, int n, const int *id, const int *type, const double *x,
-                        const double *v, const int *image, int bexpand);
-#else
-int lammps_create_atoms(void *handle, int n, const int64_t *id, const int *type, const double *x,
-                        const double *v, const int64_t *image, int bexpand);
-#endif
-
-/* ----------------------------------------------------------------------
- * Library functions for accessing neighbor lists
- * ---------------------------------------------------------------------- */
-
-int lammps_find_pair_neighlist(void *handle, const char *style, int exact, int nsub, int request);
-int lammps_find_fix_neighlist(void *handle, const char *id, int request);
-int lammps_find_compute_neighlist(void *handle, const char *id, int request);
-int lammps_neighlist_num_elements(void *handle, int idx);
-void lammps_neighlist_element_neighbors(void *handle, int idx, int element, int *iatom,
-                                        int *numneigh, int **neighbors);
-
-/* ----------------------------------------------------------------------
- * Library functions for retrieving configuration information
- * ---------------------------------------------------------------------- */
-
-int lammps_version(void *handle);
-void lammps_get_os_info(char *buffer, int buf_size);
-
-int lammps_config_has_mpi_support();
-int lammps_config_has_gzip_support();
-int lammps_config_has_png_support();
-int lammps_config_has_jpeg_support();
-int lammps_config_has_ffmpeg_support();
-int lammps_config_has_exceptions();
-
-int lammps_config_has_package(const char *);
-int lammps_config_package_count();
-int lammps_config_package_name(int, char *, int);
-
-int lammps_config_accelerator(const char *, const char *, const char *);
-int lammps_has_gpu_device();
-void lammps_get_gpu_device_info(char *buffer, int buf_size);
-
-int lammps_has_style(void *, const char *, const char *);
-int lammps_style_count(void *, const char *);
-int lammps_style_name(void *, const char *, int, char *, int);
-
-int lammps_has_id(void *, const char *, const char *);
-int lammps_id_count(void *, const char *);
-int lammps_id_name(void *, const char *, int, char *, int);
-
-int lammps_plugin_count();
-int lammps_plugin_name(int, char *, char *, int);
-
-/* ----------------------------------------------------------------------
- * Utility functions
- * ---------------------------------------------------------------------- */
-
-#if !defined(LAMMPS_BIGBIG)
-int lammps_encode_image_flags(int ix, int iy, int iz);
-void lammps_decode_image_flags(int image, int *flags);
-#else
-int64_t lammps_encode_image_flags(int ix, int iy, int iz);
-void lammps_decode_image_flags(int64_t image, int *flags);
-#endif
-
-#if defined(LAMMPS_BIGBIG)
-typedef void (*FixExternalFnPtr)(void *, int64_t, int, int64_t *, double **, double **);
-void lammps_set_fix_external_callback(void *handle, const char *id, FixExternalFnPtr funcptr,
-                                      void *ptr);
-#elif defined(LAMMPS_SMALLBIG)
-typedef void (*FixExternalFnPtr)(void *, int64_t, int, int *, double **, double **);
-void lammps_set_fix_external_callback(void *, const char *, FixExternalFnPtr, void *);
-#else
-typedef void (*FixExternalFnPtr)(void *, int, int, int *, double **, double **);
-void lammps_set_fix_external_callback(void *, const char *, FixExternalFnPtr, void *);
-#endif
-double **lammps_fix_external_get_force(void *handle, const char *id);
-void lammps_fix_external_set_energy_global(void *handle, const char *id, double eng);
-void lammps_fix_external_set_energy_peratom(void *handle, const char *id, double *eng);
-void lammps_fix_external_set_virial_global(void *handle, const char *id, double *virial);
-void lammps_fix_external_set_virial_peratom(void *handle, const char *id, double **virial);
-void lammps_fix_external_set_vector_length(void *handle, const char *id, int len);
-void lammps_fix_external_set_vector(void *handle, const char *id, int idx, double val);
-
-void lammps_flush_buffers(void *ptr);
-
-void lammps_free(void *ptr);
-
-int lammps_is_running(void *handle);
-void lammps_force_timeout(void *handle);
-
-int lammps_has_error(void *handle);
-int lammps_get_last_error_message(void *handle, char *buffer, int buf_size);
-
-#ifdef __cplusplus
-}
-#endif
-
-#endif /* LAMMPS_LIBRARY_H */
-
-/* Local Variables:
- * fill-column: 72
- * End: */
diff --git a/doc/includes/lammps/lmppython.h b/doc/includes/lammps/lmppython.h
deleted file mode 100644
index 145c06a6af..0000000000
--- a/doc/includes/lammps/lmppython.h
+++ /dev/null
@@ -1,57 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_PYTHON_H
-#define LMP_PYTHON_H
-
-#include "pointers.h"
-
-namespace LAMMPS_NS {
-
-class PythonInterface {
- public:
-  virtual ~PythonInterface() = default;
-  virtual void command(int, char **) = 0;
-  virtual void invoke_function(int, char *) = 0;
-  virtual int find(const char *) = 0;
-  virtual int variable_match(const char *, const char *, int) = 0;
-  virtual char *long_string(int ifunc) = 0;
-  virtual int execute_string(char *) = 0;
-  virtual int execute_file(char *) = 0;
-  virtual bool has_minimum_version(int major, int minor) = 0;
-};
-
-class Python : protected Pointers {
- public:
-  Python(class LAMMPS *);
-  ~Python() override;
-
-  void command(int, char **);
-  void invoke_function(int, char *);
-  int find(const char *);
-  int variable_match(const char *, const char *, int);
-  char *long_string(int ifunc);
-  int execute_string(char *);
-  int execute_file(char *);
-  bool has_minimum_version(int major, int minor);
-
-  bool is_enabled() const;
-  void init();
-  static void finalize();
-
- private:
-  PythonInterface *impl;
-};
-
-}    // namespace LAMMPS_NS
-#endif
diff --git a/doc/includes/lammps/lmptype.h b/doc/includes/lammps/lmptype.h
deleted file mode 100644
index e02cd74734..0000000000
--- a/doc/includes/lammps/lmptype.h
+++ /dev/null
@@ -1,299 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-// define integer data types used by LAMMPS and associated size limits
-
-// smallint = variables for on-processor system (nlocal, nmax, etc)
-// imageint = variables for atom image flags (image)
-// tagint = variables for atom IDs and molecule IDs (tag,molecule)
-// bigint = variables for total system (natoms, ntimestep, etc)
-
-// smallint must be an int, as defined by C compiler
-// imageint can be 32-bit or 64-bit int, must be >= smallint
-// tagint can be 32-bit or 64-bit int, must be >= smallint
-// bigint can be 32-bit or 64-bit int, must be >= imageint,tagint
-
-// MPI_LMP_BIGINT = MPI data type corresponding to a bigint
-
-#ifndef LMP_LMPTYPE_H
-#define LMP_LMPTYPE_H
-
-// C++11 check
-
-#if __cplusplus < 201103L
-#error LAMMPS requires a C++11 (or later) compliant compiler. Enable C++11 compatibility or upgrade the compiler.
-#endif
-
-#ifndef __STDC_LIMIT_MACROS
-#define __STDC_LIMIT_MACROS
-#endif
-
-#ifndef __STDC_FORMAT_MACROS
-#define __STDC_FORMAT_MACROS
-#endif
-
-#include <cinttypes>    // IWYU pragma: export
-#include <climits>      // IWYU pragma: export
-#include <cstdint>      // IWYU pragma: export
-#include <cstdlib>      // IWYU pragma: export
-
-// grrr - IBM Power6 does not provide this def in their system header files
-
-#ifndef PRId64
-#define PRId64 "ld"
-#endif
-
-namespace LAMMPS_NS {
-
-// reserve 2 highest bits in molecular system neigh list for special bonds flag
-// reserve 3rd highest bit in neigh list for fix neigh/history flag
-// max local + ghost atoms per processor = 2^29 - 1
-
-#define SBBITS 30
-#define HISTBITS 29
-#define NEIGHMASK 0x1FFFFFFF
-#define HISTMASK 0xDFFFFFFF
-#define SPECIALMASK 0x3FFFFFFF
-
-// default to 32-bit smallint and other ints, 64-bit bigint
-
-#if !defined(LAMMPS_SMALLSMALL) && !defined(LAMMPS_BIGBIG) && !defined(LAMMPS_SMALLBIG)
-#define LAMMPS_SMALLBIG
-#endif
-
-// allow user override of LONGLONG to LONG, necessary for some machines/MPI
-
-#ifdef LAMMPS_LONGLONG_TO_LONG
-#define MPI_LL MPI_LONG
-#define ATOLL atoll
-#else
-#define MPI_LL MPI_LONG_LONG
-#define ATOLL atol
-#endif
-
-// for atomic problems that exceed 2 billion (2^31) atoms
-// 32-bit smallint/imageint/tagint, 64-bit bigint
-// atom IDs and molecule IDs are limited to 32-bit
-
-#ifdef LAMMPS_SMALLBIG
-
-typedef int smallint;
-typedef int imageint;
-typedef int tagint;
-typedef int64_t bigint;
-
-#define MAXSMALLINT INT_MAX
-#define MAXTAGINT INT_MAX
-#define MAXBIGINT INT64_MAX
-
-#define MPI_LMP_TAGINT MPI_INT
-#define MPI_LMP_IMAGEINT MPI_INT
-#define MPI_LMP_BIGINT MPI_LL
-
-#define TAGINT_FORMAT "%d"
-#define BIGINT_FORMAT "%" PRId64
-
-#define ATOTAGINT atoi
-#define ATOBIGINT ATOLL
-
-#define LAMMPS_TAGINT LAMMPS_INT
-#define LAMMPS_TAGINT_2D LAMMPS_INT_2D
-#define LAMMPS_BIGINT LAMMPS_INT64
-#define LAMMPS_BIGINT_2D LAMMPS_INT64_2D
-
-#define IMGMASK 1023
-#define IMGMAX 512
-#define IMGBITS 10
-#define IMG2BITS 20
-
-#endif
-
-// for molecular problems that exceed 2 billion (2^31) atoms
-// or problems where atoms wrap around the periodic box more than 512 times
-// 32-bit smallint, 64-bit imageint/tagint/bigint
-
-#ifdef LAMMPS_BIGBIG
-
-typedef int smallint;
-typedef int64_t imageint;
-typedef int64_t tagint;
-typedef int64_t bigint;
-
-#define MAXSMALLINT INT_MAX
-#define MAXTAGINT INT64_MAX
-#define MAXBIGINT INT64_MAX
-
-#define MPI_LMP_TAGINT MPI_LL
-#define MPI_LMP_IMAGEINT MPI_LL
-#define MPI_LMP_BIGINT MPI_LL
-
-#define TAGINT_FORMAT "%" PRId64
-#define BIGINT_FORMAT "%" PRId64
-
-#define ATOTAGINT ATOLL
-#define ATOBIGINT ATOLL
-
-#define LAMMPS_TAGINT LAMMPS_INT64
-#define LAMMPS_TAGINT_2D LAMMPS_INT64_2D
-#define LAMMPS_BIGINT LAMMPS_INT64
-#define LAMMPS_BIGINT_2D LAMMPS_INT64_2D
-
-#define IMGMASK 2097151
-#define IMGMAX 1048576
-#define IMGBITS 21
-#define IMG2BITS 42
-
-#endif
-
-// for machines that do not support 64-bit ints
-// 32-bit smallint/imageint/tagint/bigint
-
-#ifdef LAMMPS_SMALLSMALL
-
-typedef int smallint;
-typedef int imageint;
-typedef int tagint;
-typedef int bigint;
-
-#define MAXSMALLINT INT_MAX
-#define MAXTAGINT INT_MAX
-#define MAXBIGINT INT_MAX
-
-#define MPI_LMP_TAGINT MPI_INT
-#define MPI_LMP_IMAGEINT MPI_INT
-#define MPI_LMP_BIGINT MPI_INT
-
-#define TAGINT_FORMAT "%d"
-#define BIGINT_FORMAT "%d"
-
-#define ATOTAGINT atoi
-#define ATOBIGINT atoi
-
-#define LAMMPS_TAGINT LAMMPS_INT
-#define LAMMPS_TAGINT_2D LAMMPS_INT_2D
-#define LAMMPS_BIGINT LAMMPS_INT
-#define LAMMPS_BIGINT_2D LAMMPS_INT_2D
-
-#define IMGMASK 1023
-#define IMGMAX 512
-#define IMGBITS 10
-#define IMG2BITS 20
-
-#endif
-
-/** Data structure for packing 32-bit and 64-bit integers
- * into double (communication) buffers
- *
- * Using this union avoids aliasing issues by having member types
- * (double, int) referencing the same buffer memory location.
- *
- * The explicit constructor for 32-bit integers prevents compilers
- * from (incorrectly) calling the double constructor when storing
- * an int into a double buffer.
-\verbatim embed:rst
-
-**Usage:**
-
-.. code-block:: c++
-   :caption: To copy an integer into a double buffer:
-
-   double buf[2];
-   int    foo =   1;
-   tagint bar = 2<<40;
-   buf[1] = ubuf(foo).d;
-   buf[2] = ubuf(bar).d;
-
-.. code-block:: c++
-   :caption: To copy from a double buffer back to an int:
-
-   foo = (int)    ubuf(buf[1]).i;
-   bar = (tagint) ubuf(buf[2]).i;
-
-The typecasts prevent compiler warnings about possible truncation issues.
-\endverbatim
-  */
-union ubuf {
-  double d;
-  int64_t i;
-  ubuf(const double &arg) : d(arg) {}
-  ubuf(const int64_t &arg) : i(arg) {}
-  ubuf(const int &arg) : i(arg) {}
-};
-}    // namespace LAMMPS_NS
-
-// preprocessor macros for compiler specific settings
-// clear previous definitions to avoid redefinition warning
-
-#ifdef _alignvar
-#undef _alignvar
-#endif
-#ifdef _noalias
-#undef _noalias
-#endif
-#ifdef _noopt
-#undef _noopt
-#endif
-
-// define stack variable alignment
-
-#if defined(__INTEL_COMPILER)
-#define _alignvar(expr, val) __declspec(align(val)) expr
-#elif defined(__GNUC__) || defined(__PGI) || defined(__INTEL_LLVM_COMPILER)
-#define _alignvar(expr, val) expr __attribute((aligned(val)))
-#else
-#define _alignvar(expr, val) expr
-#endif
-
-// declaration to lift aliasing restrictions
-
-#if defined(__INTEL_COMPILER) || defined(__PGI)
-#define _noalias restrict
-#elif defined(__GNUC__) || defined(__INTEL_LLVM_COMPILER)
-#define _noalias __restrict
-#else
-#define _noalias
-#endif
-
-// Declaration to turn off optimization for specific noncritical
-// functions and avoid compiler warnings about variable tracking.
-// Disable for broken -D_FORTIFY_SOURCE feature.
-
-#if defined(__clang__)
-#define _noopt __attribute__((optnone))
-#elif defined(__INTEL_COMPILER) || defined(__INTEL_LLVM_COMPILER)
-#define _noopt
-#elif defined(__PGI)
-#define _noopt
-#elif defined(__GNUC__)
-#if (__GNUC__ > 4) || ((__GNUC__ == 4) && (__GNUC_MINOR__ >= 9))
-#if defined(_FORTIFY_SOURCE) && (_FORTIFY_SOURCE > 0)
-#define _noopt __attribute__((optimize("no-var-tracking-assignments")))
-#else
-#define _noopt __attribute__((optimize("O0", "no-var-tracking-assignments")))
-#endif
-#else
-#if defined(_FORTIFY_SOURCE) && (_FORTIFY_SOURCE > 0)
-#define _noopt
-#else
-#define _noopt __attribute__((optimize("O0")))
-#endif
-#endif
-#else
-#define _noopt
-#endif
-
-// suppress unused parameter warning
-
-#define LMP_UNUSED_PARAM(x) (void) (x)
-
-#endif
diff --git a/doc/includes/lammps/memory.h b/doc/includes/lammps/memory.h
deleted file mode 100644
index b680821d0d..0000000000
--- a/doc/includes/lammps/memory.h
+++ /dev/null
@@ -1,751 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_MEMORY_H
-#define LMP_MEMORY_H
-
-#include "pointers.h"
-
-namespace LAMMPS_NS {
-
-class Memory : protected Pointers {
- public:
-  Memory(class LAMMPS *);
-
-  void *smalloc(bigint n, const char *);
-  void *srealloc(void *, bigint n, const char *);
-  void sfree(void *);
-  void fail(const char *);
-
-  /* ----------------------------------------------------------------------
-   create/grow/destroy vecs and multidim arrays with contiguous memory blocks
-   only use with primitive data types, e.g. 1d vec of ints, 2d array of doubles
-   fail() prevents use with pointers,
-     e.g. 1d vec of int*, due to mismatched destroy
-   avoid use with non-primitive data types to avoid code bloat
-   for these other cases, use smalloc/srealloc/sfree directly
-------------------------------------------------------------------------- */
-
-  /* ----------------------------------------------------------------------
-   create a 1d array
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> TYPE *create(TYPE *&array, int n, const char *name)
-  {
-    // POSSIBLE future change
-    //if (n <= 0) return nullptr;
-
-    bigint nbytes = ((bigint) sizeof(TYPE)) * n;
-    array = (TYPE *) smalloc(nbytes, name);
-    return array;
-  }
-
-  template <typename TYPE> TYPE **create(TYPE **& /*array*/, int /*n*/, const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   grow or shrink 1d array
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> TYPE *grow(TYPE *&array, int n, const char *name)
-  {
-    // POSSIBLE future change
-    //if (n <= 0) {
-    //  destroy(array);
-    //  return nullptr;
-    // }
-
-    if (array == nullptr) return create(array, n, name);
-
-    bigint nbytes = ((bigint) sizeof(TYPE)) * n;
-    array = (TYPE *) srealloc(array, nbytes, name);
-    return array;
-  }
-
-  template <typename TYPE> TYPE **grow(TYPE **& /*array*/, int /*n*/, const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   destroy a 1d array
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> void destroy(TYPE *&array)
-  {
-    sfree(array);
-    array = nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   create a 1d array with index from nlo to nhi inclusive
-   cannot grow it
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> TYPE *create1d_offset(TYPE *&array, int nlo, int nhi, const char *name)
-  {
-    // POSSIBLE future change
-    // if (nlo > nhi) return nullptr;
-
-    bigint nbytes = ((bigint) sizeof(TYPE)) * (nhi - nlo + 1);
-    array = (TYPE *) smalloc(nbytes, name);
-    array -= nlo;
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE **create1d_offset(TYPE **& /*array*/, int /*nlo*/, int /*nhi*/, const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   destroy a 1d array with index offset
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> void destroy1d_offset(TYPE *&array, int offset)
-  {
-    if (array) sfree(&array[offset]);
-    array = nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   create a 2d array
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> TYPE **create(TYPE **&array, int n1, int n2, const char *name)
-  {
-    // POSSIBLE future change
-    //if (n1 <= 0 || n2 <= 0) return nullptr;
-
-    bigint nbytes = ((bigint) sizeof(TYPE)) * n1 * n2;
-    TYPE *data = (TYPE *) smalloc(nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE *)) * n1;
-    array = (TYPE **) smalloc(nbytes, name);
-
-    bigint n = 0;
-    for (int i = 0; i < n1; i++) {
-      array[i] = &data[n];
-      n += n2;
-    }
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE ***create(TYPE ***& /*array*/, int /*n1*/, int /*n2*/, const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   grow or shrink 1st dim of a 2d array
-   last dim must stay the same
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> TYPE **grow(TYPE **&array, int n1, int n2, const char *name)
-  {
-    // POSSIBLE future change
-    //if (n1 <= 0 || n2 <= 0) {
-    //  destroy(array);
-    //  return nullptr;
-    // }
-
-    if (array == nullptr) return create(array, n1, n2, name);
-
-    bigint nbytes = ((bigint) sizeof(TYPE)) * n1 * n2;
-    TYPE *data = (TYPE *) srealloc(array[0], nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE *)) * n1;
-    array = (TYPE **) srealloc(array, nbytes, name);
-
-    bigint n = 0;
-    for (int i = 0; i < n1; i++) {
-      array[i] = &data[n];
-      n += n2;
-    }
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE ***grow(TYPE ***& /*array*/, int /*n1*/, int /*n2*/, const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   destroy a 2d array
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> void destroy(TYPE **&array)
-  {
-    if (array == nullptr) return;
-    sfree(array[0]);
-    sfree(array);
-    array = nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   create a 2d array with a ragged 2nd dimension
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> TYPE **create_ragged(TYPE **&array, int n1, int *n2, const char *name)
-  {
-    // POSSIBLE future change
-    //if (n1 <= 0) return nullptr;
-
-    bigint n2sum = 0;
-    for (int i = 0; i < n1; i++) n2sum += n2[i];
-
-    bigint nbytes = ((bigint) sizeof(TYPE)) * n2sum;
-    TYPE *data = (TYPE *) smalloc(nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE *)) * n1;
-    array = (TYPE **) smalloc(nbytes, name);
-
-    bigint n = 0;
-    for (int i = 0; i < n1; i++) {
-      array[i] = &data[n];
-      n += n2[i];
-    }
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE ***create_ragged(TYPE ***&array, int n1, int *n2, int **n3, const char *name)
-  {
-    bigint size, nbytes;
-    int i, j;
-
-    size = 0;
-    for (i = 0; i < n1; i++)
-      for (j = 0; j < n2[i]; j++) size += n3[i][j];
-    nbytes = ((bigint) sizeof(TYPE)) * size;
-    TYPE *data = (TYPE *) smalloc(nbytes, name);
-
-    size = 0;
-    for (i = 0; i < n1; i++) size += n2[i];
-    nbytes = ((bigint) sizeof(TYPE *)) * size;
-    TYPE **plane = (TYPE **) smalloc(nbytes, name);
-
-    nbytes = ((bigint) sizeof(TYPE **)) * n1;
-    array = (TYPE ***) smalloc(nbytes, name);
-
-    bigint m = 0;
-    bigint n = 0;
-    for (i = 0; i < n1; i++) {
-      array[i] = &plane[m];
-      for (j = 0; j < n2[i]; j++) {
-        plane[m + j] = &data[n];
-        n += n3[i][j];
-      }
-      m += n2[i];
-    }
-
-    return array;
-  }
-
-  /* ----------------------------------------------------------------------
-   create a 2d array with 2nd index from n2lo to n2hi inclusive
-   cannot grow it
-------------------------------------------------------------------------- */
-
-  template <typename TYPE>
-  TYPE **create2d_offset(TYPE **&array, int n1, int n2lo, int n2hi, const char *name)
-  {
-    // POSSIBLE future change
-    //if (n1 <= 0 || n2lo > n2hi) return nullptr;
-
-    int n2 = n2hi - n2lo + 1;
-    create(array, n1, n2, name);
-    for (int i = 0; i < n1; i++) array[i] -= n2lo;
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE ***create2d_offset(TYPE ***& /*array*/, int /*n1*/, int /*n2lo*/, int /*n2hi*/,
-                          const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   destroy a 2d array with 2nd index offset
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> void destroy2d_offset(TYPE **&array, int offset)
-  {
-    if (array == nullptr) return;
-    sfree(&array[0][offset]);
-    sfree(array);
-    array = nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   create a 3d array
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> TYPE ***create(TYPE ***&array, int n1, int n2, int n3, const char *name)
-  {
-    // POSSIBLE future change
-    //if (n1 <= 0 || n2 <= 0 || n3 <= 0) return nullptr;
-
-    bigint nbytes = ((bigint) sizeof(TYPE)) * n1 * n2 * n3;
-    TYPE *data = (TYPE *) smalloc(nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE *)) * n1 * n2;
-    TYPE **plane = (TYPE **) smalloc(nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE **)) * n1;
-    array = (TYPE ***) smalloc(nbytes, name);
-
-    int i, j;
-    bigint m;
-    bigint n = 0;
-    for (i = 0; i < n1; i++) {
-      m = ((bigint) i) * n2;
-      array[i] = &plane[m];
-      for (j = 0; j < n2; j++) {
-        plane[m + j] = &data[n];
-        n += n3;
-      }
-    }
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE ****create(TYPE ****& /*array*/, int /*n1*/, int /*n2*/, int /*n3*/, const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   grow or shrink 1st dim of a 3d array
-   last 2 dims must stay the same
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> TYPE ***grow(TYPE ***&array, int n1, int n2, int n3, const char *name)
-  {
-    // POSSIBLE future change
-    //if (n1 <= 0 || n2 <= 0 || n3 <= 0) {
-    //  destroy(array);
-    //  return nullptr;
-    //};
-
-    if (array == nullptr) return create(array, n1, n2, n3, name);
-
-    bigint nbytes = ((bigint) sizeof(TYPE)) * n1 * n2 * n3;
-    TYPE *data = (TYPE *) srealloc(array[0][0], nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE *)) * n1 * n2;
-    TYPE **plane = (TYPE **) srealloc(array[0], nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE **)) * n1;
-    array = (TYPE ***) srealloc(array, nbytes, name);
-
-    int i, j;
-    bigint m;
-    bigint n = 0;
-    for (i = 0; i < n1; i++) {
-      m = ((bigint) i) * n2;
-      array[i] = &plane[m];
-      for (j = 0; j < n2; j++) {
-        plane[m + j] = &data[n];
-        n += n3;
-      }
-    }
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE ****grow(TYPE ****& /*array*/, int /*n1*/, int /*n2*/, int /*n3*/, const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   destroy a 3d array
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> void destroy(TYPE ***&array)
-  {
-    if (array == nullptr) return;
-    sfree(array[0][0]);
-    sfree(array[0]);
-    sfree(array);
-    array = nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   create a 3d array with 1st index from n1lo to n1hi inclusive
-   cannot grow it
-------------------------------------------------------------------------- */
-
-  template <typename TYPE>
-  TYPE ***create3d_offset(TYPE ***&array, int n1lo, int n1hi, int n2, int n3, const char *name)
-  {
-    if (n1lo > n1hi || n2 <= 0 || n3 <= 0) return nullptr;
-
-    int n1 = n1hi - n1lo + 1;
-    create(array, n1, n2, n3, name);
-    array -= n1lo;
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE ****create3d_offset(TYPE ****& /*array*/, int /*n1lo*/, int /*n1hi*/, int /*n2*/, int /*n3*/,
-                           const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   free a 3d array with 1st index offset
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> void destroy3d_offset(TYPE ***&array, int offset)
-  {
-    if (array == nullptr) return;
-    sfree(&array[offset][0][0]);
-    sfree(&array[offset][0]);
-    sfree(&array[offset]);
-    array = nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   create a 3d array with
-   1st index from n1lo to n1hi inclusive,
-   2nd index from n2lo to n2hi inclusive,
-   3rd index from n3lo to n3hi inclusive
-   cannot grow it
-------------------------------------------------------------------------- */
-
-  template <typename TYPE>
-  TYPE ***create3d_offset(TYPE ***&array, int n1lo, int n1hi, int n2lo, int n2hi, int n3lo,
-                          int n3hi, const char *name)
-  {
-    if (n1lo > n1hi || n2lo > n2hi || n3lo > n3hi) return nullptr;
-
-    int n1 = n1hi - n1lo + 1;
-    int n2 = n2hi - n2lo + 1;
-    int n3 = n3hi - n3lo + 1;
-    create(array, n1, n2, n3, name);
-
-    bigint m = ((bigint) n1) * n2;
-    for (bigint i = 0; i < m; i++) array[0][i] -= n3lo;
-    for (int i = 0; i < n1; i++) array[i] -= n2lo;
-    array -= n1lo;
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE ****create3d_offset(TYPE ****& /*array*/, int /*n1lo*/, int /*n1hi*/, int /*n2lo*/,
-                           int /*n2hi*/, int /*n3lo*/, int /*n3hi*/, const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   free a 3d array with all 3 indices offset
-------------------------------------------------------------------------- */
-
-  template <typename TYPE>
-  void destroy3d_offset(TYPE ***&array, int n1_offset, int n2_offset, int n3_offset)
-  {
-    if (array == nullptr) return;
-    sfree(&array[n1_offset][n2_offset][n3_offset]);
-    sfree(&array[n1_offset][n2_offset]);
-    sfree(&array[n1_offset]);
-    array = nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   create a 4d array
-------------------------------------------------------------------------- */
-
-  template <typename TYPE>
-  TYPE ****create(TYPE ****&array, int n1, int n2, int n3, int n4, const char *name)
-  {
-    // POSSIBLE future change
-    //if (n1 <= 0 || n2 <= 0 || n3 <= 0 || n4 <= 0) return nullptr;
-
-    bigint nbytes = ((bigint) sizeof(TYPE)) * n1 * n2 * n3 * n4;
-    TYPE *data = (TYPE *) smalloc(nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE *)) * n1 * n2 * n3;
-    TYPE **cube = (TYPE **) smalloc(nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE **)) * n1 * n2;
-    TYPE ***plane = (TYPE ***) smalloc(nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE ***)) * n1;
-    array = (TYPE ****) smalloc(nbytes, name);
-
-    bigint i, j, k;
-    bigint m1, m2;
-    bigint n = 0;
-    for (i = 0; i < n1; i++) {
-      m2 = i * n2;
-      array[i] = &plane[m2];
-      for (j = 0; j < n2; j++) {
-        m1 = i * n2 + j;
-        m2 = i * n2 * n3 + j * n3;
-        plane[m1] = &cube[m2];
-        for (k = 0; k < n3; k++) {
-          m1 = i * n2 * n3 + j * n3 + k;
-          cube[m1] = &data[n];
-          n += n4;
-        }
-      }
-    }
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE *****create(TYPE *****& /*array*/, int /*n1*/, int /*n2*/, int /*n3*/, int /*n4*/,
-                   const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-  grow or shrink 1st dim of a 4d array
-  last 3 dims must stay the same
-  ------------------------------------------------------------------------- */
-
-  template <typename TYPE>
-  TYPE ****grow(TYPE ****&array, int n1, int n2, int n3, int n4, const char *name)
-  {
-    // POSSIBLE future change
-    //if (n1 <= 0 || n2 <= 0 || n3 <= 0 || n4 <= 0) {
-    //  destroy(array);
-    //  return nullptr;
-    // }
-
-    if (array == nullptr) return create(array, n1, n2, n3, n4, name);
-
-    bigint nbytes = ((bigint) sizeof(TYPE)) * n1 * n2 * n3 * n4;
-    TYPE *data = (TYPE *) srealloc(array[0][0][0], nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE *)) * n1 * n2 * n3;
-    TYPE **cube = (TYPE **) srealloc(array[0][0], nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE **)) * n1 * n2;
-    TYPE ***plane = (TYPE ***) srealloc(array[0], nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE ***)) * n1;
-    array = (TYPE ****) srealloc(array, nbytes, name);
-
-    int i, j, k;
-    bigint m1, m2;
-    bigint n = 0;
-    for (i = 0; i < n1; i++) {
-      m2 = ((bigint) i) * n2;
-      array[i] = &plane[m2];
-      for (j = 0; j < n2; j++) {
-        m1 = ((bigint) i) * n2 + j;
-        m2 = ((bigint) i) * n2 * n3 + j * n3;
-        plane[m1] = &cube[m2];
-        for (k = 0; k < n3; k++) {
-          m1 = ((bigint) i) * n2 * n3 + j * n3 + k;
-          cube[m1] = &data[n];
-          n += n4;
-        }
-      }
-    }
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE *****grow(TYPE *****& /*array*/, int /*n1*/, int /*n2*/, int /*n3*/, int /*n4*/,
-                 const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   destroy a 4d array
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> void destroy(TYPE ****&array)
-  {
-    if (array == nullptr) return;
-    sfree(array[0][0][0]);
-    sfree(array[0][0]);
-    sfree(array[0]);
-    sfree(array);
-    array = nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   create a 4d array with indices
-   2nd index from n2lo to n2hi inclusive
-   3rd index from n3lo to n3hi inclusive
-   4th index from n4lo to n4hi inclusive
-   cannot grow it
-------------------------------------------------------------------------- */
-
-  template <typename TYPE>
-  TYPE ****create4d_offset(TYPE ****&array, int n1, int n2lo, int n2hi, int n3lo, int n3hi,
-                           int n4lo, int n4hi, const char *name)
-  {
-    if (n1 <= 0 || n2lo > n2hi || n3lo > n3hi || n4lo > n4hi) return nullptr;
-
-    int n2 = n2hi - n2lo + 1;
-    int n3 = n3hi - n3lo + 1;
-    int n4 = n4hi - n4lo + 1;
-    create(array, n1, n2, n3, n4, name);
-
-    bigint m = ((bigint) n1) * n2 * n3;
-    for (bigint i = 0; i < m; i++) array[0][0][i] -= n4lo;
-    m = ((bigint) n1) * n2;
-    for (bigint i = 0; i < m; i++) array[0][i] -= n3lo;
-    for (int i = 0; i < n1; i++) array[i] -= n2lo;
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE ****create4d_offset(TYPE *****& /*array*/, int /*n1*/, int /*n2lo*/, int /*n2hi*/,
-                           int /*n3lo*/, int /*n3hi*/, int /*n4lo*/, int /*n4hi*/, const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   free a 4d array with indices 2,3,4 offset
-------------------------------------------------------------------------- */
-
-  template <typename TYPE>
-  void destroy4d_offset(TYPE ****&array, int n2_offset, int n3_offset, int n4_offset)
-  {
-    if (array == nullptr) return;
-    sfree(&array[0][n2_offset][n3_offset][n4_offset]);
-    sfree(&array[0][n2_offset][n3_offset]);
-    sfree(&array[0][n2_offset]);
-    sfree(array);
-    array = nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   create a 5d array
-------------------------------------------------------------------------- */
-
-  template <typename TYPE>
-  TYPE *****create(TYPE *****&array, int n1, int n2, int n3, int n4, int n5, const char *name)
-  {
-    // POSSIBLE future change
-    //if (n1 <= 0 || n2 <= 0 || n3 <= 0 || n4 <= 0 || n5 <= 0) return nullptr;
-
-    bigint nbytes = ((bigint) sizeof(TYPE)) * n1 * n2 * n3 * n4 * n5;
-    TYPE *data = (TYPE *) smalloc(nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE *)) * n1 * n2 * n3 * n4;
-    TYPE **level4 = (TYPE **) smalloc(nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE **)) * n1 * n2 * n3;
-    TYPE ***level3 = (TYPE ***) smalloc(nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE ***)) * n1 * n2;
-    TYPE ****level2 = (TYPE ****) smalloc(nbytes, name);
-    nbytes = ((bigint) sizeof(TYPE ****)) * n1;
-    array = (TYPE *****) smalloc(nbytes, name);
-
-    int i, j, k, l;
-    bigint m1, m2;
-    bigint n = 0;
-    for (i = 0; i < n1; i++) {
-      m2 = ((bigint) i) * n2;
-      array[i] = &level2[m2];
-      for (j = 0; j < n2; j++) {
-        m1 = ((bigint) i) * n2 + j;
-        m2 = ((bigint) i) * n2 * n3 + ((bigint) j) * n3;
-        level2[m1] = &level3[m2];
-        for (k = 0; k < n3; k++) {
-          m1 = ((bigint) i) * n2 * n3 + ((bigint) j) * n3 + k;
-          m2 = ((bigint) i) * n2 * n3 * n4 + ((bigint) j) * n3 * n4 + ((bigint) k) * n4;
-          level3[m1] = &level4[m2];
-          for (l = 0; l < n4; l++) {
-            m1 = ((bigint) i) * n2 * n3 * n4 + ((bigint) j) * n3 * n4 + ((bigint) k) * n4 + l;
-            level4[m1] = &data[n];
-            n += n5;
-          }
-        }
-      }
-    }
-    return array;
-  }
-
-  template <typename TYPE>
-  TYPE ******create(TYPE ******& /*array*/, int /*n1*/, int /*n2*/, int /*n3*/, int /*n4*/,
-                    int /*n5*/, const char *name)
-  {
-    fail(name);
-    return nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   destroy a 5d array
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> void destroy(TYPE *****&array)
-  {
-    if (array == nullptr) return;
-    sfree(array[0][0][0][0]);
-    sfree(array[0][0][0]);
-    sfree(array[0][0]);
-    sfree(array[0]);
-    sfree(array);
-    array = nullptr;
-  }
-
-  /* ----------------------------------------------------------------------
-   memory usage of arrays, including pointers
-------------------------------------------------------------------------- */
-
-  template <typename TYPE> double usage(TYPE *array, int n)
-  {
-    (void) array;
-    double bytes = ((double) sizeof(TYPE)) * n;
-    return bytes;
-  }
-
-  template <typename TYPE> double usage(TYPE **array, int n1, int n2)
-  {
-    (void) array;
-    double bytes = ((double) sizeof(TYPE)) * n1 * n2;
-    bytes += ((double) sizeof(TYPE *)) * n1;
-    return bytes;
-  }
-
-  template <typename TYPE> double usage(TYPE ***array, int n1, int n2, int n3)
-  {
-    (void) array;
-    double bytes = ((double) sizeof(TYPE)) * n1 * n2 * n3;
-    bytes += ((double) sizeof(TYPE *)) * n1 * n2;
-    bytes += ((double) sizeof(TYPE **)) * n1;
-    return bytes;
-  }
-
-  template <typename TYPE> double usage(TYPE ****array, int n1, int n2, int n3, int n4)
-  {
-    (void) array;
-    double bytes = ((double) sizeof(TYPE)) * n1 * n2 * n3 * n4;
-    bytes += ((double) sizeof(TYPE *)) * n1 * n2 * n3;
-    bytes += ((double) sizeof(TYPE **)) * n1 * n2;
-    bytes += ((double) sizeof(TYPE ***)) * n1;
-    return bytes;
-  }
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/modify.h b/doc/includes/lammps/modify.h
deleted file mode 100644
index 820b957033..0000000000
--- a/doc/includes/lammps/modify.h
+++ /dev/null
@@ -1,218 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_MODIFY_H
-#define LMP_MODIFY_H
-
-#include "pointers.h"
-
-#include <map>
-#include <vector>
-
-namespace LAMMPS_NS {
-
-class Compute;
-class Fix;
-
-class Modify : protected Pointers {
-  friend class Info;
-  friend class FixSRP;
-  friend class Respa;
-  friend class RespaOMP;
-
- public:
-  int n_initial_integrate, n_post_integrate, n_pre_exchange;
-  int n_pre_neighbor, n_post_neighbor;
-  int n_pre_force, n_pre_reverse, n_post_force_any;
-  int n_final_integrate, n_end_of_step;
-  int n_energy_couple, n_energy_global, n_energy_atom;
-  int n_initial_integrate_respa, n_post_integrate_respa;
-  int n_pre_force_respa, n_post_force_respa_any, n_final_integrate_respa;
-  int n_min_pre_exchange, n_min_pre_neighbor, n_min_post_neighbor;
-  int n_min_pre_force, n_min_pre_reverse, n_min_post_force, n_min_energy;
-
-  int restart_pbc_any;         // 1 if any fix sets restart_pbc
-  int nfix_restart_global;     // stored fix global info from restart file
-  int nfix_restart_peratom;    // stored fix peratom info from restart file
-
-  int nfix, maxfix;
-  Fix **fix;     // list of fixes
-  int *fmask;    // bit mask for when each fix is applied
-
-  int ncompute, maxcompute;
-  Compute **compute;    // list of computes
-
-  Modify(class LAMMPS *);
-  ~Modify() override;
-  virtual void init();
-  virtual void setup(int);
-  virtual void setup_pre_exchange();
-  virtual void setup_pre_neighbor();
-  virtual void setup_post_neighbor();
-  virtual void setup_pre_force(int);
-  virtual void setup_pre_reverse(int, int);
-  virtual void initial_integrate(int);
-  virtual void post_integrate();
-  virtual void pre_exchange();
-  virtual void pre_neighbor();
-  virtual void post_neighbor();
-  virtual void pre_force(int);
-  virtual void pre_reverse(int, int);
-  virtual void post_force(int);
-  virtual void final_integrate();
-  virtual void end_of_step();
-  virtual double energy_couple();
-  virtual double energy_global();
-  virtual void energy_atom(int, double *);
-  virtual void post_run();
-  virtual void create_attribute(int);
-
-  virtual void setup_pre_force_respa(int, int);
-  virtual void initial_integrate_respa(int, int, int);
-  virtual void post_integrate_respa(int, int);
-  virtual void pre_force_respa(int, int, int);
-  virtual void post_force_respa(int, int, int);
-  virtual void final_integrate_respa(int, int);
-
-  virtual void min_pre_exchange();
-  virtual void min_pre_neighbor();
-  virtual void min_post_neighbor();
-  virtual void min_pre_force(int);
-  virtual void min_pre_reverse(int, int);
-  virtual void min_post_force(int);
-
-  virtual double min_energy(double *);
-  virtual void min_store();
-  virtual void min_step(double, double *);
-  virtual void min_clearstore();
-  virtual void min_pushstore();
-  virtual void min_popstore();
-  virtual double max_alpha(double *);
-  virtual int min_dof();
-  virtual int min_reset_ref();
-
-  Fix *add_fix(int, char **, int trysuffix = 1);
-  Fix *add_fix(const std::string &, int trysuffix = 1);
-  Fix *replace_fix(const char *, int, char **, int trysuffix = 1);
-  Fix *replace_fix(const std::string &, const std::string &, int trysuffix = 1);
-  void modify_fix(int, char **);
-  void delete_fix(const std::string &);
-  void delete_fix(int);
-
-  // deprecated API
-  int find_fix(const std::string &);
-  // new API
-  Fix *get_fix_by_id(const std::string &) const;
-  Fix *get_fix_by_index(int idx) const { return ((idx >= 0) && (idx < nfix)) ? fix[idx] : nullptr; }
-  const std::vector<Fix *> get_fix_by_style(const std::string &) const;
-  const std::vector<Fix *> &get_fix_list();
-
-  Compute *add_compute(int, char **, int trysuffix = 1);
-  Compute *add_compute(const std::string &, int trysuffix = 1);
-  void modify_compute(int, char **);
-  void delete_compute(const std::string &);
-  void delete_compute(int);
-
-  // deprecated API
-  int find_compute(const std::string &);
-  // new API
-  Compute *get_compute_by_id(const std::string &) const;
-  Compute *get_compute_by_index(int idx) const
-  {
-    return ((idx >= 0) && (idx < ncompute)) ? compute[idx] : nullptr;
-  }
-  const std::vector<Compute *> get_compute_by_style(const std::string &) const;
-  const std::vector<Compute *> &get_compute_list();
-
-  void clearstep_compute();
-  void addstep_compute(bigint);
-  void addstep_compute_all(bigint);
-
-  int check_package(const char *);
-  int check_rigid_group_overlap(int);
-  int check_rigid_region_overlap(int, class Region *);
-  int check_rigid_list_overlap(int *);
-
-  void write_restart(FILE *);
-  int read_restart(FILE *);
-  void restart_deallocate(int);
-
-  double memory_usage();
-
- protected:
-  // internal fix counts
-
-  int n_post_force, n_post_force_group, n_post_force_respa;
-
-  // lists of fixes to apply at different stages of timestep
-
-  int *list_initial_integrate, *list_post_integrate;
-  int *list_pre_exchange, *list_pre_neighbor, *list_post_neighbor;
-  int *list_pre_force, *list_pre_reverse;
-  int *list_post_force, *list_post_force_group;
-  int *list_final_integrate, *list_end_of_step;
-  int *list_energy_couple, *list_energy_global, *list_energy_atom;
-  int *list_initial_integrate_respa, *list_post_integrate_respa;
-  int *list_pre_force_respa, *list_post_force_respa;
-  int *list_final_integrate_respa;
-  int *list_min_pre_exchange, *list_min_pre_neighbor, *list_min_post_neighbor;
-  int *list_min_pre_force, *list_min_pre_reverse, *list_min_post_force;
-  int *list_min_energy;
-
-  int *end_of_step_every;
-
-  int n_timeflag;    // list of computes that store time invocation
-  int *list_timeflag;
-
-  char **id_restart_global;       // stored fix global info
-  char **style_restart_global;    // from read-in restart file
-  char **state_restart_global;
-  int *used_restart_global;
-
-  char **id_restart_peratom;       // stored fix peratom info
-  char **style_restart_peratom;    // from read-in restart file
-  int *index_restart_peratom;
-  int *used_restart_peratom;
-
-  int index_permanent;    // fix/compute index returned to library call
-
-  // vectors to be used for new-API accessors as wrapper
-  std::vector<Fix *> fix_list;
-  std::vector<Compute *> compute_list;
-
-  void list_init(int, int &, int *&);
-  void list_init_end_of_step(int, int &, int *&);
-  void list_init_energy_couple(int &, int *&);
-  void list_init_energy_global(int &, int *&);
-  void list_init_energy_atom(int &, int *&);
-  void list_init_post_force_group(int &, int *&);
-  void list_init_post_force_respa_group(int &, int *&);
-  void list_init_dofflag(int &, int *&);
-  void list_init_compute();
-
- public:
-  typedef Compute *(*ComputeCreator)(LAMMPS *, int, char **);
-  typedef std::map<std::string, ComputeCreator> ComputeCreatorMap;
-  ComputeCreatorMap *compute_map;
-
-  typedef Fix *(*FixCreator)(LAMMPS *, int, char **);
-  typedef std::map<std::string, FixCreator> FixCreatorMap;
-  FixCreatorMap *fix_map;
-
- protected:
-  void create_factories();
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/neigh_list.h b/doc/includes/lammps/neigh_list.h
deleted file mode 100644
index abd9b8205e..0000000000
--- a/doc/includes/lammps/neigh_list.h
+++ /dev/null
@@ -1,116 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_NEIGH_LIST_H
-#define LMP_NEIGH_LIST_H
-
-#include "pointers.h"    // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-class NeighList : protected Pointers {
- public:
-  enum RequestorType { NONE, PAIR, FIX, COMPUTE };
-  void *requestor;                 // object that made request
-  RequestorType requestor_type;    // type of requestor
-
-  int index;    // index of which neigh list this is
-                // also indexes the request it came from
-                // and the npair list of NPair classes
-
-  int bin_method;        // 0 if no binning, else 1-N index into binnames
-  int stencil_method;    // 0 if no stencil, else 1-N index into stencilnames
-  int pair_method;       // 0 if no pair, else 1-N index into pairnames
-
-  // settings from NeighRequest
-
-  int occasional;     // 0 if build every reneighbor, 1 if not
-  int ghost;          // 1 if list stores neighbors of ghosts
-  int ssa;            // 1 if list stores Shardlow data
-  int history;        // 1 if there is neigh history (FixNeighHist)
-  int respaouter;     // 1 if list is a rRespa outer list
-  int respamiddle;    // 1 if there is also a rRespa middle list
-  int respainner;     // 1 if there is also a rRespa inner list
-  int copy;           // 1 if this list is copied from another list
-  int kk2cpu;         // 1 if this list is copied from Kokkos to CPU
-  int copymode;       // 1 if this is a Kokkos on-device copy
-  int id;             // copied from neighbor list request
-
-  // data structs to store neighbor pairs I,J and associated values
-
-  int inum;            // # of I atoms neighbors are stored for
-  int gnum;            // # of ghost atoms neighbors are stored for
-  int *ilist;          // local indices of I atoms
-  int *numneigh;       // # of J neighbors for each I atom
-  int **firstneigh;    // ptr to 1st J int value of each I atom
-  int maxatom;         // size of allocated per-atom arrays
-
-  int pgsize;            // size of each page
-  int oneatom;           // max size for one atom
-  MyPage<int> *ipage;    // pages of neighbor indices
-
-  // data structs to store rRESPA neighbor pairs I,J and associated values
-
-  int inum_inner;            // # of I atoms neighbors are stored for
-  int gnum_inner;            // # of ghost atoms neighbors are stored for
-  int *ilist_inner;          // local indices of I atoms
-  int *numneigh_inner;       // # of J neighbors for each I atom
-  int **firstneigh_inner;    // ptr to 1st J int value of each I atom
-
-  int inum_middle;            // # of I atoms neighbors are stored for
-  int gnum_middle;            // # of ghost atoms neighbors are stored for
-  int *ilist_middle;          // local indices of I atoms
-  int *numneigh_middle;       // # of J neighbors for each I atom
-  int **firstneigh_middle;    // ptr to 1st J int value of each I atom
-
-  MyPage<int> *ipage_inner;     // pages of neighbor indices for inner
-  MyPage<int> *ipage_middle;    // pages of neighbor indices for middle
-
-  // atom types to skip when building list
-  // copied info from corresponding request into realloced vec/array
-
-  int *iskip;      // iskip[i] = 1 if atoms of type I are not in list
-  int **ijskip;    // ijskip[i][j] = 1 if pairs of type I,J are not in list
-
-  // settings and pointers for related neighbor lists and fixes
-
-  NeighList *listcopy;    // me = copy list, point to list I copy from
-  NeighList *listskip;    // me = skip list, point to list I skip from
-  NeighList *listfull;    // me = half list, point to full I derive from
-
-  class Fix *fix_bond;    // fix that stores bond info
-
-  // Kokkos package
-
-  int kokkos;    // 1 if list stores Kokkos data
-  ExecutionSpace execution_space;
-
-  // DPD-REACT package and Shardlow Splitting Algorithm (SSA) support
-
-  class NPair *np;    // ptr to NPair instance I depend on
-
-  // methods
-
-  NeighList(class LAMMPS *);
-  ~NeighList() override;
-  void post_constructor(class NeighRequest *);
-  void setup_pages(int, int);    // setup page data structures
-  void grow(int, int);           // grow all data structs
-  void print_attributes();       // debug routine
-  int get_maxlocal() { return maxatom; }
-  double memory_usage();
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/neighbor.h b/doc/includes/lammps/neighbor.h
deleted file mode 100644
index 3492693766..0000000000
--- a/doc/includes/lammps/neighbor.h
+++ /dev/null
@@ -1,346 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_NEIGHBOR_H
-#define LMP_NEIGHBOR_H
-
-#include "pointers.h"
-
-namespace LAMMPS_NS {
-
-// forward declarations
-class NeighRequest;
-class NeighList;
-
-class Neighbor : protected Pointers {
- public:
-  enum { NSQ, BIN, MULTI_OLD, MULTI };
-  int style;           // 0,1,2,3 = nsq, bin, multi/old, multi
-  int every;           // build every this many steps
-  int delay;           // delay build for this many steps
-  int dist_check;      // 0 = always build, 1 = only if 1/2 dist
-  int ago;             // how many steps ago neighboring occurred
-  int pgsize;          // size of neighbor page
-  int oneatom;         // max # of neighbors for one atom
-  int includegroup;    // only build pairwise lists for this group
-  int build_once;      // 1 if only build lists once per run
-
-  double skin;                    // skin distance
-  double cutneighmin;             // min neighbor cutoff for all type pairs
-  double cutneighmax;             // max neighbor cutoff for all type pairs
-  double cutneighmaxsq;           // cutneighmax squared
-  double **cutneighsq;            // neighbor cutneigh sq for each type pair
-  double **cutneighghostsq;       // cutneigh sq for each ghost type pair
-  double *cuttype;                // for each type, max neigh cut w/ others
-  double *cuttypesq;              // cuttype squared
-  double cut_inner_sq;            // outer cutoff for inner neighbor list
-  double cut_middle_sq;           // outer cutoff for middle neighbor list
-  double cut_middle_inside_sq;    // inner cutoff for middle neighbor list
-
-  int binsizeflag;        // user-chosen bin size
-  double binsize_user;    // set externally by some accelerator pkgs
-
-  bigint ncalls;      // # of times build has been called
-  bigint ndanger;     // # of dangerous builds
-  bigint lastcall;    // timestep of last neighbor::build() call
-
-  // geometry and static info, used by other Neigh classes
-
-  double *bboxlo, *bboxhi;    // ptrs to full domain bounding box
-                              // different for orthog vs triclinic
-
-  // exclusion info, used by NeighPair
-
-  int exclude;    // 0 if no type/group exclusions, 1 if yes
-
-  int nex_type;                // # of entries in type exclusion list
-  int *ex1_type, *ex2_type;    // pairs of types to exclude
-  int **ex_type;               // 2d array of excluded type pairs
-
-  int nex_group;                 // # of entries in group exclusion list
-  int *ex1_group, *ex2_group;    // pairs of group #'s to exclude
-  int *ex1_bit, *ex2_bit;        // pairs of group bits to exclude
-
-  int nex_mol;          // # of entries in molecule exclusion list
-  int *ex_mol_group;    // molecule group #'s to exclude
-  int *ex_mol_bit;      // molecule group bits to exclude
-  int *ex_mol_intra;    // 0 = exclude if in 2 molecules (inter)
-                        // 1 = exclude if in same molecule (intra)
-
-  // special info, used by NeighPair
-
-  int special_flag[4];    // flags for 1-2, 1-3, 1-4 neighbors
-
-  // cluster setting, used by NeighTopo
-
-  int cluster_check;    // 1 if check bond/angle/etc satisfies minimg
-
-  // pairwise neighbor lists and corresponding requests
-
-  int nlist;           // # of pairwise neighbor lists
-  int nrequest;        // # of requests, same as nlist
-  int old_nrequest;    // # of requests for previous run
-
-  NeighList **lists;
-  NeighRequest **requests;        // from Pair,Fix,Compute,Command classes
-  NeighRequest **old_requests;    // copy of requests to compare to
-
-  // data from topology neighbor lists
-
-  int nbondlist;    // list of bonds to compute
-  int **bondlist;
-  int nanglelist;    // list of angles to compute
-  int **anglelist;
-  int ndihedrallist;    // list of dihedrals to compute
-  int **dihedrallist;
-  int nimproperlist;    // list of impropers to compute
-  int **improperlist;
-
-  // optional type grouping for multi
-
-  int custom_collection_flag;      // 1 if custom collections are defined for multi
-  int interval_collection_flag;    // 1 if custom collections use intervals
-  int finite_cut_flag;             // 1 if multi considers finite atom size
-  int ncollections;                // # of custom collections
-  int nmax_collection;             // maximum atoms stored in collection array
-  int *type2collection;            // ntype array mapping types to custom collections
-  double *collection2cut;          // ncollection array with upper bounds on cutoff intervals
-  double **cutcollectionsq;        // cutoffs for each combination of collections
-  int *collection;                 // local per-atom array to store collection id
-
-  // public methods
-
-  Neighbor(class LAMMPS *);
-  ~Neighbor() override;
-  virtual void init();
-
-  // old API for creating neighbor list requests
-  int request(void *, int instance = 0);
-
-  // new API for creating neighbor list requests
-  NeighRequest *add_request(class Pair *, int flags = 0);
-  NeighRequest *add_request(class Fix *, int flags = 0);
-  NeighRequest *add_request(class Compute *, int flags = 0);
-  NeighRequest *add_request(class Command *, const char *, int flags = 0);
-
-  // set neighbor list request OpenMP flag
-  void set_omp_neighbor(int);
-
-  // report if we have INTEL package neighbor lists
-  bool has_intel_request() const;
-
-  int decide();                     // decide whether to build or not
-  virtual int check_distance();     // check max distance moved since last build
-  void setup_bins();                // setup bins based on box and cutoff
-  virtual void build(int);          // build all perpetual neighbor lists
-  virtual void build_topology();    // pairwise topology neighbor lists
-  // create a one-time pairwise neigh list
-  void build_one(class NeighList *list, int preflag = 0);
-  void set(int, char **);                     // set neighbor style and skin distance
-  void reset_timestep(bigint);                // reset of timestep counter
-  void modify_params(int, char **);           // modify params that control builds
-  void modify_params(const std::string &);    // convenience overload
-
-  void exclusion_group_group_delete(int, int);    // rm a group-group exclusion
-  int exclude_setting();                          // return exclude value to accelerator pkg
-
-  // find a neighbor list based on requestor
-  NeighList *find_list(void *, const int id = 0) const;
-  // find a neighbor request based on requestor
-  NeighRequest *find_request(void *, const int id = 0) const;
-
-  const std::vector<NeighRequest *> get_pair_requests() const;
-  int any_full();                // Check if any old requests had full neighbor lists
-  void build_collection(int);    // build peratom collection array starting at the given index
-
-  bigint get_nneigh_full();    // return number of neighbors in a regular full neighbor list
-  bigint get_nneigh_half();    // return number of neighbors in a regular half neighbor list
-  double memory_usage();
-
-  bigint last_setup_bins;    // step of last neighbor::setup_bins() call
-
- protected:
-  int me, nprocs;
-  int firsttime;    // flag for calling init_styles() only once
-
-  int dimension;      // 2/3 for 2d/3d
-  int triclinic;      // 0 if domain is orthog, 1 if triclinic
-  int newton_pair;    // 0 if newton off for pairwise, 1 if on
-
-  int must_check;       // 1 if must check other classes to reneigh
-  int restart_check;    // 1 if restart enabled, 0 if no
-  int fix_check;        // # of fixes that induce reneigh
-  int *fixchecklist;    // which fixes to check
-
-  double triggersq;    // trigger = build when atom moves this dist
-
-  double **xhold;    // atom coords at last neighbor build
-  int maxhold;       // size of xhold array
-
-  int boxcheck;                           // 1 if need to store box size
-  double boxlo_hold[3], boxhi_hold[3];    // box size at last neighbor build
-  double corners_hold[8][3];              // box corners at last neighbor build
-  double (*corners)[3];                   // ptr to 8 corners of triclinic box
-
-  double inner[2], middle[2];    // rRESPA cutoffs for extra lists
-
-  int old_style, old_triclinic;    // previous run info
-  int old_pgsize, old_oneatom;     // used to avoid re-creating neigh lists
-
-  int nstencil_perpetual;    // # of perpetual NeighStencil classes
-  int npair_perpetual;       // #x of perpetual NeighPair classes
-  int *slist;                // indices of them in neigh_stencil
-  int *plist;                // indices of them in neigh_pair
-
-  int maxex_type;     // max # in exclusion type list
-  int maxex_group;    // max # in exclusion group list
-  int maxex_mol;      // max # in exclusion molecule list
-
-  int maxatom;       // max size of atom-based NeighList arrays
-  int maxrequest;    // max size of NeighRequest list
-
-  // info for other Neigh classes: NBin,NStencil,NPair,NTopo
-
-  int nbin, nstencil;
-  int nbclass, nsclass, npclass;
-  int bondwhich, anglewhich, dihedralwhich, improperwhich;
-
-  typedef class NBin *(*BinCreator)(class LAMMPS *);
-  BinCreator *binclass;
-  char **binnames;
-  int *binmasks;
-  class NBin **neigh_bin;
-
-  typedef class NStencil *(*StencilCreator)(class LAMMPS *);
-  StencilCreator *stencilclass;
-  char **stencilnames;
-  int *stencilmasks;
-  class NStencil **neigh_stencil;
-
-  typedef class NPair *(*PairCreator)(class LAMMPS *);
-  PairCreator *pairclass;
-  char **pairnames;
-  int *pairmasks;
-  class NPair **neigh_pair;
-
-  class NTopo *neigh_bond;
-  class NTopo *neigh_angle;
-  class NTopo *neigh_dihedral;
-  class NTopo *neigh_improper;
-
-  // internal methods
-  // including creator methods for Nbin,Nstencil,Npair instances
-
-  void init_styles();
-  int init_pair();
-  virtual void init_topology();
-
-  void morph_unique();
-  void morph_skip();
-  void morph_granular();
-  void morph_halffull();
-  void morph_copy();
-
-  void print_pairwise_info();
-  void requests_new2old();
-
-  int choose_bin(class NeighRequest *);
-  int choose_stencil(class NeighRequest *);
-  int choose_pair(class NeighRequest *);
-
-  // dummy functions provided by NeighborKokkos, called in init()
-  // otherwise NeighborKokkos would have to overwrite init()
-
-  int copymode;
-
-  virtual void init_cutneighsq_kokkos(int) {}
-  virtual void create_kokkos_list(int) {}
-  virtual void init_ex_type_kokkos(int) {}
-  virtual void init_ex_bit_kokkos() {}
-  virtual void init_ex_mol_bit_kokkos() {}
-  virtual void grow_ex_mol_intra_kokkos() {}
-  virtual void set_binsize_kokkos() {}
-};
-
-namespace NeighConst {
-
-  enum {
-    NB_INTEL = 1 << 0,
-    NB_KOKKOS_DEVICE = 1 << 1,
-    NB_KOKKOS_HOST = 1 << 2,
-    NB_SSA = 1 << 3,
-    NB_STANDARD = 1 << 4,
-    NB_MULTI = 1 << 5
-  };
-
-  enum {
-    NS_BIN = 1 << 0,
-    NS_MULTI = 1 << 1,
-    NS_HALF = 1 << 2,
-    NS_FULL = 1 << 3,
-    NS_2D = 1 << 4,
-    NS_3D = 1 << 5,
-    NS_ORTHO = 1 << 6,
-    NS_TRI = 1 << 7,
-    NS_GHOST = 1 << 8,
-    NS_SSA = 1 << 9,
-    NS_MULTI_OLD = 1 << 10
-  };
-
-  enum {
-    NP_NSQ = 1 << 0,
-    NP_BIN = 1 << 1,
-    NP_MULTI = 1 << 2,
-    NP_HALF = 1 << 3,
-    NP_FULL = 1 << 4,
-    NP_ORTHO = 1 << 5,
-    NP_TRI = 1 << 6,
-    NP_ATOMONLY = 1 << 7,
-    NP_MOLONLY = 1 << 8,
-    NP_NEWTON = 1 << 9,
-    NP_NEWTOFF = 1 << 10,
-    NP_GHOST = 1 << 11,
-    NP_SIZE = 1 << 12,
-    NP_ONESIDE = 1 << 13,
-    NP_RESPA = 1 << 14,
-    NP_BOND = 1 << 15,
-    NP_OMP = 1 << 16,
-    NP_INTEL = 1 << 17,
-    NP_KOKKOS_DEVICE = 1 << 18,
-    NP_KOKKOS_HOST = 1 << 19,
-    NP_SSA = 1 << 20,
-    NP_COPY = 1 << 21,
-    NP_SKIP = 1 << 22,
-    NP_HALF_FULL = 1 << 23,
-    NP_OFF2ON = 1 << 24,
-    NP_MULTI_OLD = 1 << 25
-  };
-
-  enum {
-    REQ_DEFAULT = 0,
-    REQ_FULL = 1 << 0,
-    REQ_GHOST = 1 << 1,
-    REQ_SIZE = 1 << 2,
-    REQ_HISTORY = 1 << 3,
-    REQ_OCCASIONAL = 1 << 4,
-    REQ_RESPA_INOUT = 1 << 5,
-    REQ_RESPA_ALL = 1 << 6,
-    REQ_NEWTON_ON = 1 << 8,
-    REQ_NEWTON_OFF = 1 << 9,
-    REQ_SSA = 1 << 10,
-  };
-}    // namespace NeighConst
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/output.h b/doc/includes/lammps/output.h
deleted file mode 100644
index c35d2728e5..0000000000
--- a/doc/includes/lammps/output.h
+++ /dev/null
@@ -1,102 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_OUTPUT_H
-#define LMP_OUTPUT_H
-
-#include "pointers.h"
-
-#include <map>
-
-namespace LAMMPS_NS {
-
-class Dump;
-
-class Output : protected Pointers {
- public:
-  bigint next;    // next timestep for any kind of output
-
-  bigint next_thermo;      // next timestep for thermo output
-  int thermo_every;        // output freq for thermo, 0 if first/last only
-  bigint last_thermo;      // last timestep thermo was output
-  char *var_thermo;        // variable name for thermo freq, null pointer if every
-  int ivar_thermo;         // variable index for thermo frequency
-  class Thermo *thermo;    // Thermodynamic computations
-
-  int ndump;                    // # of Dumps defined
-  int max_dump;                 // max size of Dump list
-  bigint next_dump_any;         // next timestep for any dump
-  bigint next_time_dump_any;    // next timestep for any time dump with computes
-  int any_time_dumps;           // 1 if any time dump defined
-  int *mode_dump;               // 0/1 if write every N timesteps or Delta in sim time
-  int *every_dump;              // dump every N timesteps, 0 if variable
-  double *every_time_dump;      // dump every Delta of sim time, 0.0 if variable
-  bigint *next_dump;            // next timestep to perform dump
-  double *next_time_dump;       // next simulation time to perform dump (mode = 1)
-  bigint *last_dump;            // last timestep each snapshot was output
-  char **var_dump;              // variable name for next dump (steps or sim time)
-  int *ivar_dump;               // variable index of var_dump name
-  Dump **dump;                  // list of defined Dumps
-
-  int restart_flag;               // 1 if any restart files are written
-  int restart_flag_single;        // 1 if single restart files are written
-  int restart_flag_double;        // 1 if double restart files are written
-  bigint next_restart;            // next timestep to write any restart file
-  bigint next_restart_single;     // next timestep to write a single restart file
-  bigint next_restart_double;     // next timestep to write a double restart file
-  int restart_every_single;       // single restart file write freq, 0 if var
-  int restart_every_double;       // double restart file write freq, 0 if var
-  bigint last_restart;            // last timestep any restart file was output
-  int restart_toggle;             // 0 if use restart2a as prefix, 1 if restart2b
-  char *var_restart_single;       // variable name for single restart freq
-  char *var_restart_double;       // variable name for double restart freq
-  int ivar_restart_single;        // index of var_restart_single
-  int ivar_restart_double;        // index of var_restart_double
-  char *restart1;                 // name single restart file
-  char *restart2a, *restart2b;    // names of double restart files
-  class WriteRestart *restart;    // class for writing restart files
-
-  typedef Dump *(*DumpCreator)(LAMMPS *, int, char **);
-  typedef std::map<std::string, DumpCreator> DumpCreatorMap;
-  DumpCreatorMap *dump_map;
-
-  Output(class LAMMPS *);
-  ~Output() override;
-  void init();
-  void setup(int memflag = 1);    // initial output before run/min
-  void write(bigint);             // output for current timestep
-  void write_dump(bigint);        // force output of dump snapshots
-  void write_restart(bigint);     // force output of a restart file
-  void reset_timestep(bigint);    // reset output which depends on timestep
-  void reset_dt();                // reset output which depends on timestep size
-
-  Dump *add_dump(int, char **);                 // add a Dump to Dump list
-  void modify_dump(int, char **);               // modify a Dump
-  void delete_dump(const std::string &);        // delete a Dump from Dump list
-  int find_dump(const char *);                  // find a Dump ID
-  Dump *get_dump_by_id(const std::string &);    // find a Dump by ID
-  int check_time_dumps(bigint);                 // check if any time dump is output now
-
-  void set_thermo(int, char **);        // set thermo output freqquency
-  void create_thermo(int, char **);     // create a thermo style
-  void create_restart(int, char **);    // create Restart and restart files
-
-  void memory_usage();    // print out memory usage
-
- private:
-  void calculate_next_dump(int, int, bigint);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/pair.h b/doc/includes/lammps/pair.h
deleted file mode 100644
index 4763a225d2..0000000000
--- a/doc/includes/lammps/pair.h
+++ /dev/null
@@ -1,295 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_PAIR_H
-#define LMP_PAIR_H
-
-#include "pointers.h"    // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-class Pair : protected Pointers {
-  friend class AngleSDK;
-  friend class AngleSDKOMP;
-  friend class BondQuartic;
-  friend class BondQuarticOMP;
-  friend class DihedralCharmm;
-  friend class DihedralCharmmOMP;
-  friend class FixGPU;
-  friend class FixIntel;
-  friend class FixOMP;
-  friend class FixQEq;
-  friend class PairHybrid;
-  friend class PairHybridScaled;
-  friend class ThrOMP;
-  friend class Info;
-  friend class Neighbor;
-
- public:
-  static int instance_total;    // # of Pair classes ever instantiated
-
-  double eng_vdwl, eng_coul;    // accumulated energies
-  double virial[6];             // accumulated virial: xx,yy,zz,xy,xz,yz
-  double *eatom, **vatom;       // accumulated per-atom energy/virial
-  double **cvatom;              // accumulated per-atom centroid virial
-
-  double cutforce;    // max cutoff for all atom pairs
-  double **cutsq;     // cutoff sq for each atom pair
-  int **setflag;      // 0/1 = whether each i,j has been set
-
-  int comm_forward;        // size of forward communication (0 if none)
-  int comm_reverse;        // size of reverse communication (0 if none)
-  int comm_reverse_off;    // size of reverse comm even if newton off
-
-  int single_enable;              // 1 if single() routine exists
-  int born_matrix_enable;         // 1 if born_matrix() routine exists
-  int single_hessian_enable;      // 1 if single_hessian() routine exists
-  int restartinfo;                // 1 if pair style writes restart info
-  int respa_enable;               // 1 if inner/middle/outer rRESPA routines
-  int one_coeff;                  // 1 if allows only one coeff * * call
-  int manybody_flag;              // 1 if a manybody potential
-  int unit_convert_flag;          // value != 0 indicates support for unit conversion.
-  int no_virial_fdotr_compute;    // 1 if does not invoke virial_fdotr_compute()
-  int writedata;                  // 1 if writes coeffs to data file
-  int finitecutflag;              // 1 if cut depends on finite atom size
-  int ghostneigh;                 // 1 if pair style needs neighbors of ghosts
-  double **cutghost;              // cutoff for each ghost pair
-
-  int ewaldflag;         // 1 if compatible with Ewald solver
-  int pppmflag;          // 1 if compatible with PPPM solver
-  int msmflag;           // 1 if compatible with MSM solver
-  int dispersionflag;    // 1 if compatible with LJ/dispersion solver
-  int tip4pflag;         // 1 if compatible with TIP4P solver
-  int dipoleflag;        // 1 if compatible with dipole solver
-  int spinflag;          // 1 if compatible with spin solver
-  int reinitflag;        // 1 if compatible with fix adapt and alike
-
-  int centroidstressflag;    // centroid stress compared to two-body stress
-                             // CENTROID_SAME = same as two-body stress
-                             // CENTROID_AVAIL = different and implemented
-                             // CENTROID_NOTAVAIL = different, not yet implemented
-
-  int tail_flag;          // pair_modify flag for LJ tail correction
-  double etail, ptail;    // energy/pressure tail corrections
-  double etail_ij, ptail_ij;
-
-  int evflag;    // energy,virial settings
-  int eflag_either, eflag_global, eflag_atom;
-  int vflag_either, vflag_global, vflag_atom, cvflag_atom;
-
-  int ncoultablebits;    // size of Coulomb table, accessed by KSpace
-  int ndisptablebits;    // size of dispersion table
-  double tabinnersq;
-  double tabinnerdispsq;
-  double *rtable, *drtable, *ftable, *dftable, *ctable, *dctable;
-  double *etable, *detable, *ptable, *dptable, *vtable, *dvtable;
-  double *rdisptable, *drdisptable, *fdisptable, *dfdisptable;
-  double *edisptable, *dedisptable;
-  int ncoulshiftbits, ncoulmask;
-  int ndispshiftbits, ndispmask;
-
-  int nextra;         // # of extra quantities pair style calculates
-  double *pvector;    // vector of extra pair quantities
-
-  int single_extra;    // number of extra single values calculated
-  double *svector;     // vector of extra single quantities
-
-  class NeighList *list;        // standard neighbor list used by most pairs
-  class NeighList *listhalf;    // half list used by some pairs
-  class NeighList *listfull;    // full list used by some pairs
-
-  int allocated;       // 0/1 = whether arrays are allocated
-                       //       public so external driver can check
-  int compute_flag;    // 0 if skip compute()
-  int mixed_flag;      // 1 if all itype != jtype coeffs are from mixing
-  bool did_mix;        // set to true by mix_energy() to indicate that mixing was performed
-
-  enum { GEOMETRIC, ARITHMETIC, SIXTHPOWER };    // mixing options
-
-  int beyond_contact, nondefault_history_transfer;    // for granular styles
-
-  // KOKKOS host/device flag and data masks
-
-  ExecutionSpace execution_space;
-  unsigned int datamask_read, datamask_modify;
-  int kokkosable;    // 1 if Kokkos pair
-
-  Pair(class LAMMPS *);
-  ~Pair() override;
-
-  // top-level Pair methods
-
-  void init();
-  virtual void reinit();
-  virtual void setup() {}
-  double mix_energy(double, double, double, double);
-  double mix_distance(double, double);
-  void write_file(int, char **);
-  void init_bitmap(double, double, int, int &, int &, int &, int &);
-  virtual void modify_params(int, char **);
-  void compute_dummy(int, int);
-
-  // need to be public, so can be called by pair_style reaxc
-
-  void ev_tally(int, int, int, int, double, double, double, double, double, double);
-  void ev_tally3(int, int, int, double, double, double *, double *, double *, double *);
-  void v_tally2_newton(int, double *, double *);
-  void v_tally3(int, int, int, double *, double *, double *, double *);
-  void v_tally4(int, int, int, int, double *, double *, double *, double *, double *, double *);
-
-  // general child-class methods
-
-  virtual void compute(int, int) = 0;
-  virtual void compute_inner() {}
-  virtual void compute_middle() {}
-  virtual void compute_outer(int, int) {}
-
-  virtual double single(int, int, int, int, double, double, double, double &fforce)
-  {
-    fforce = 0.0;
-    return 0.0;
-  }
-
-  void hessian_twobody(double fforce, double dfac, double delr[3], double phiTensor[6]);
-
-  virtual double single_hessian(int, int, int, int, double, double[3], double, double,
-                                double &fforce, double d2u[6])
-  {
-    fforce = 0.0;
-    for (int i = 0; i < 6; i++) d2u[i] = 0;
-    return 0.0;
-  }
-
-  virtual void born_matrix(int /*i*/, int /*j*/, int /*itype*/, int /*jtype*/, double /*rsq*/,
-                           double /*factor_coul*/, double /*factor_lj*/, double &du, double &du2)
-  {
-    du = du2 = 0.0;
-  }
-
-  virtual void settings(int, char **) = 0;
-  virtual void coeff(int, char **) = 0;
-
-  virtual void init_style();
-  virtual void init_list(int, class NeighList *);
-  virtual double init_one(int, int) { return 0.0; }
-
-  virtual void init_tables(double, double *);
-  virtual void init_tables_disp(double);
-  virtual void free_tables();
-  virtual void free_disp_tables();
-
-  virtual void write_restart(FILE *);
-  virtual void read_restart(FILE *);
-  virtual void write_restart_settings(FILE *) {}
-  virtual void read_restart_settings(FILE *) {}
-  virtual void write_data(FILE *) {}
-  virtual void write_data_all(FILE *) {}
-
-  virtual int pack_forward_comm(int, int *, double *, int, int *) { return 0; }
-  virtual void unpack_forward_comm(int, int, double *) {}
-  virtual int pack_reverse_comm(int, int, double *) { return 0; }
-  virtual void unpack_reverse_comm(int, int *, double *) {}
-  virtual double memory_usage();
-
-  void set_copymode(int value) { copymode = value; }
-
-  // specific child-class methods for certain Pair styles
-
-  virtual void *extract(const char *, int &) { return nullptr; }
-  virtual void swap_eam(double *, double **) {}
-  virtual void reset_dt() {}
-  virtual void min_xf_pointers(int, double **, double **) {}
-  virtual void min_xf_get(int) {}
-  virtual void min_x_set(int) {}
-  virtual void transfer_history(double *, double *) {}
-  virtual double atom2cut(int) { return 0.0; }
-  virtual double radii2cut(double, double) { return 0.0; }
-
-  // management of callbacks to be run from ev_tally()
-
- protected:
-  int num_tally_compute;
-  class Compute **list_tally_compute;
-
- public:
-  virtual void add_tally_callback(class Compute *);
-  virtual void del_tally_callback(class Compute *);
-
- protected:
-  int instance_me;      // which Pair class instantiation I am
-  int special_lj[4];    // copied from force->special_lj for Kokkos
-  int suffix_flag;      // suffix compatibility flag
-
-  // pair_modify settings
-  int offset_flag, mix_flag;    // flags for offset and mixing
-  double tabinner;              // inner cutoff for Coulomb table
-  double tabinner_disp;         // inner cutoff for dispersion table
-
- protected:
-  // for mapping of elements to atom types and parameters
-  // mostly used for manybody potentials
-  int nelements;        // # of unique elements
-  char **elements;      // names of unique elements
-  int *elem1param;      // mapping from elements to parameters
-  int **elem2param;     // mapping from element pairs to parameters
-  int ***elem3param;    // mapping from element triplets to parameters
-  int *map;             // mapping from atom types to elements
-  int nparams;          // # of stored parameter sets
-  int maxparam;         // max # of parameter sets
-  void map_element2type(int, char **, bool update_setflag = true);
-
- public:
-  // custom data type for accessing Coulomb tables
-
-  typedef union {
-    int i;
-    float f;
-  } union_int_float_t;
-
-  // Accessor for the INTEL package to determine virial calc for hybrid
-
-  inline int fdotr_is_set() const { return vflag_fdotr; }
-
- protected:
-  int vflag_fdotr;
-  int maxeatom, maxvatom, maxcvatom;
-
-  int copymode;    // if set, do not deallocate during destruction
-                   // required when classes are used as functors by Kokkos
-
-  void ev_init(int eflag, int vflag, int alloc = 1)
-  {
-    if (eflag || vflag)
-      ev_setup(eflag, vflag, alloc);
-    else
-      ev_unset();
-  }
-  virtual void ev_setup(int, int, int alloc = 1);
-  void ev_unset();
-  void ev_tally_full(int, double, double, double, double, double, double);
-  void ev_tally_xyz_full(int, double, double, double, double, double, double, double, double);
-  void ev_tally4(int, int, int, int, double, double *, double *, double *, double *, double *,
-                 double *);
-  void ev_tally_tip4p(int, int *, double *, double, double);
-  void ev_tally_xyz(int, int, int, int, double, double, double, double, double, double, double,
-                    double);
-  void v_tally2(int, int, double, double *);
-  void v_tally_tensor(int, int, int, int, double, double, double, double, double, double);
-  void virial_fdotr_compute();
-
-  inline int sbmask(int j) const { return j >> SBBITS & 3; }
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/pointers.h b/doc/includes/lammps/pointers.h
deleted file mode 100644
index 5f82872514..0000000000
--- a/doc/includes/lammps/pointers.h
+++ /dev/null
@@ -1,134 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-// clang-format off
-
-// Pointers class contains ptrs to master copy of
-//   fundamental LAMMPS class ptrs stored in lammps.h
-// every LAMMPS class inherits from Pointers to access lammps.h ptrs
-// these variables are auto-initialized by Pointer class constructor
-// *& variables are really pointers to the pointers in lammps.h
-// & enables them to be accessed directly in any class, e.g. atom->x
-
-#ifndef LMP_POINTERS_H
-#define LMP_POINTERS_H
-
-#include "lmptype.h"    // IWYU pragma: export
-
-#include <mpi.h>        // IWYU pragma: export
-#include <cstddef>      // IWYU pragme: export
-#include <cstdio>       // IWYU pragma: export
-#include <string>       // IWYU pragma: export
-
-#include "fmt/format.h" // IWYU pragma: export
-#include "lammps.h"     // IWYU pragma: export
-#include "platform.h"   // IWYU pragma: export
-#include "utils.h"      // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-// universal defines inside namespace
-
-#define FLERR __FILE__,__LINE__
-
-#define MIN(A,B) ((A) < (B) ? (A) : (B))
-#define MAX(A,B) ((A) > (B) ? (A) : (B))
-
-// enum used for KOKKOS host/device flags
-
-enum ExecutionSpace{ Host, Device };
-
-// global forward declarations
-
-template <class T> class MyPoolChunk;
-template <class T> class MyPage;
-
-/** \class LAMMPS_NS::Pointers
- * \brief Base class for LAMMPS features
- *
- * The Pointers class contains references to many of the pointers
- * and members of the LAMMPS_NS::LAMMPS class. Derived classes thus
- * gain access to the constituent class instances in the LAMMPS
- * composite class and thus to the core functionality of LAMMPS.
- *
- * This kind of construct is needed, since the LAMMPS constructor
- * should only be run once per LAMMPS instance and thus classes
- * cannot be derived from LAMMPS itself. The Pointers class
- * constructor instead only initializes C++ references to component
- * pointer in the LAMMPS class. */
-
-class Pointers {
- public:
-  Pointers(LAMMPS *ptr) :
-    lmp(ptr),
-    memory(ptr->memory),
-    error(ptr->error),
-    universe(ptr->universe),
-    input(ptr->input),
-    atom(ptr->atom),
-    update(ptr->update),
-    neighbor(ptr->neighbor),
-    comm(ptr->comm),
-    domain(ptr->domain),
-    force(ptr->force),
-    modify(ptr->modify),
-    group(ptr->group),
-    output(ptr->output),
-    timer(ptr->timer),
-    world(ptr->world),
-    infile(ptr->infile),
-    screen(ptr->screen),
-    logfile(ptr->logfile),
-    atomKK(ptr->atomKK),
-    memoryKK(ptr->memoryKK),
-    python(ptr->python) {}
-  virtual ~Pointers() = default;
-
-  // remove default members execept for the copy constructor
-
-  Pointers() = delete;
-  Pointers(const Pointers &) = default;
-  Pointers(Pointers &&) = delete;
-  Pointers & operator=(const Pointers&) = delete;
-  Pointers & operator=(Pointers&&) = delete;
-
- protected:
-  LAMMPS *lmp;
-  Memory *&memory;
-  Error *&error;
-  Universe *&universe;
-  Input *&input;
-
-  Atom *&atom;
-  Update *&update;
-  Neighbor *&neighbor;
-  Comm *&comm;
-  Domain *&domain;
-  Force *&force;
-  Modify *&modify;
-  Group *&group;
-  Output *&output;
-  Timer *&timer;
-
-  MPI_Comm &world;
-  FILE *&infile;
-  FILE *&screen;
-  FILE *&logfile;
-
-  class AtomKokkos *&atomKK;
-  class MemoryKokkos *&memoryKK;
-  class Python *&python;
-};
-
-}
-
-#endif
diff --git a/doc/includes/lammps/region.h b/doc/includes/lammps/region.h
deleted file mode 100644
index b74d839049..0000000000
--- a/doc/includes/lammps/region.h
+++ /dev/null
@@ -1,117 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_REGION_H
-#define LMP_REGION_H
-
-#include "pointers.h"    // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-class Region : protected Pointers {
- public:
-  char *id, *style;
-  Region **reglist;
-  int interior;                     // 1 for interior, 0 for exterior
-  int scaleflag;                    // 1 for lattice, 0 for box
-  double xscale, yscale, zscale;    // scale factors for box/lattice units
-  double extent_xlo, extent_xhi;    // bounding box on region
-  double extent_ylo, extent_yhi;
-  double extent_zlo, extent_zhi;
-  int bboxflag;                // 1 if bounding box is computable
-  int varshape;                // 1 if region shape changes over time
-  int dynamic;                 // 1 if position/orient changes over time
-  int moveflag, rotateflag;    // 1 if position/orientation changes
-  int openflag;                // 1 if any face is open
-  int open_faces[6];           // flags for which faces are open
-
-  int copymode;    // 1 if copy of original class
-
-  // contact = particle near region surface (for soft interactions)
-  // touch = particle touching region surface (for granular interactions)
-
-  struct Contact {
-    double r;                   // distance between particle & surf, r > 0.0
-    double delx, dely, delz;    // vector from surface pt to particle
-    double radius;              // curvature of region at contact point
-    int iwall;                  // unique id of wall for storing shear history
-    int varflag;                // 1 if wall can be variable-controlled
-  };
-  Contact *contact;    // list of contacts
-  int cmax;            // max # of contacts possible with region
-  int tmax;            // max # of touching contacts possible
-
-  // motion attributes of region
-  // public so can be accessed by other classes
-
-  double dx, dy, dz, theta;    // current displacement and orientation
-  double v[3];                 // translational velocity
-  double rpoint[3];            // current origin of rotation axis
-  double omega[3];             // angular velocity
-  double rprev;                // speed of time-dependent radius, if applicable
-  double xcenter[3];    // translated/rotated center of cylinder/sphere (only used if varshape)
-  double prev[5];       // stores displacement (X3), angle and if
-                        //  necessary, region variable size (e.g. radius)
-                        //  at previous time step
-  int vel_timestep;     // store timestep at which set_velocity was called
-                        //   prevents multiple fix/wall/gran/region calls
-  int nregion;          // For union and intersect
-  int size_restart;
-
-  Region(class LAMMPS *, int, char **);
-  ~Region() override;
-  virtual void init();
-  int dynamic_check();
-
-  // called by other classes to check point versus region
-
-  void prematch();
-  int match(double, double, double);
-  int surface(double, double, double, double);
-
-  virtual void set_velocity();
-  void velocity_contact(double *, double *, int);
-  virtual void write_restart(FILE *);
-  virtual int restart(char *, int &);
-  virtual void length_restart_string(int &);
-  virtual void reset_vel();
-
-  // implemented by each region, not called by other classes
-
-  virtual int inside(double, double, double) = 0;
-  virtual int surface_interior(double *, double) = 0;
-  virtual int surface_exterior(double *, double) = 0;
-  virtual void shape_update() {}
-  virtual void pretransform();
-  virtual void set_velocity_shape() {}
-  virtual void velocity_contact_shape(double *, double *) {}
-
- protected:
-  void add_contact(int, double *, double, double, double);
-  void options(int, char **);
-  void point_on_line_segment(double *, double *, double *, double *);
-  void forward_transform(double &, double &, double &);
-  double point[3], runit[3];
-
- private:
-  char *xstr, *ystr, *zstr, *tstr;
-  int xvar, yvar, zvar, tvar;
-  double axis[3];
-
-  void inverse_transform(double &, double &, double &);
-  void rotate(double &, double &, double &, double);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/timer.h b/doc/includes/lammps/timer.h
deleted file mode 100644
index a4b48716d5..0000000000
--- a/doc/includes/lammps/timer.h
+++ /dev/null
@@ -1,128 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_TIMER_H
-#define LMP_TIMER_H
-
-#include "pointers.h"
-
-namespace LAMMPS_NS {
-
-class Timer : protected Pointers {
- public:
-  enum ttype {
-    RESET = -2,
-    START = -1,
-    TOTAL = 0,
-    PAIR,
-    BOND,
-    KSPACE,
-    NEIGH,
-    COMM,
-    MODIFY,
-    OUTPUT,
-    SYNC,
-    ALL,
-    DEPHASE,
-    DYNAMICS,
-    QUENCH,
-    NEB,
-    REPCOMM,
-    REPOUT,
-    NUM_TIMER
-  };
-  enum tlevel { OFF = 0, LOOP, NORMAL, FULL };
-
-  Timer(class LAMMPS *);
-
-  void init();
-
-  // inline function to reduce overhead if we want no detailed timings
-
-  void stamp(enum ttype which = START)
-  {
-    if (_level > LOOP) _stamp(which);
-  }
-
-  void barrier_start();
-  void barrier_stop();
-
-  // accessor methods for supported level of detail
-
-  bool has_loop() const { return (_level >= LOOP); }
-  bool has_normal() const { return (_level >= NORMAL); }
-  bool has_full() const { return (_level >= FULL); }
-  bool has_sync() const { return (_sync != OFF); }
-
-  // flag if wallclock time is expired
-  bool is_timeout() const { return (_timeout == 0.0); }
-
-  double elapsed(enum ttype);
-  double cpu(enum ttype);
-
-  double get_cpu(enum ttype which) const { return cpu_array[which]; };
-  double get_wall(enum ttype which) const { return wall_array[which]; };
-
-  void set_wall(enum ttype, double);
-
-  // initialize timeout timer
-  void init_timeout();
-
-  // trigger enforced timeout
-  void force_timeout() { _timeout = 0.0; }
-
-  // restore original timeout setting after enforce timeout
-  void reset_timeout() { _timeout = _s_timeout; }
-
-  // get remaining time in seconds. 0.0 if inactive, negative if expired
-  double get_timeout_remain();
-
-  // print timeout message
-  void print_timeout(FILE *);
-
-  // check for timeout. inline wrapper around internal
-  // function to reduce overhead in case there is no check.
-  bool check_timeout(int step)
-  {
-    if (_timeout == 0.0) return true;
-    if (_nextcheck != step)
-      return false;
-    else
-      return _check_timeout();
-  }
-
-  void modify_params(int, char **);
-
- private:
-  double cpu_array[NUM_TIMER];
-  double wall_array[NUM_TIMER];
-  double previous_cpu;
-  double previous_wall;
-  double timeout_start;
-  int _level;        // level of detail: off=0,loop=1,normal=2,full=3
-  int _sync;         // if nonzero, synchronize tasks before setting the timer
-  int _timeout;      // max allowed wall time in seconds. infinity if negative
-  int _s_timeout;    // copy of timeout for restoring after a forced timeout
-  int _checkfreq;    // frequency of timeout checking
-  int _nextcheck;    // loop number of next timeout check
-
-  // update one specific timer array
-  void _stamp(enum ttype);
-
-  // check for timeout
-  bool _check_timeout();
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/universe.h b/doc/includes/lammps/universe.h
deleted file mode 100644
index faca04b398..0000000000
--- a/doc/includes/lammps/universe.h
+++ /dev/null
@@ -1,48 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_UNIVERSE_H
-#define LMP_UNIVERSE_H
-
-#include "pointers.h"
-
-namespace LAMMPS_NS {
-
-class Universe : protected Pointers {
- public:
-  MPI_Comm uworld;    // communicator for entire universe
-  int me, nprocs;     // my place in universe
-
-  FILE *uscreen;     // universe screen output
-  FILE *ulogfile;    // universe logfile
-
-  int existflag;           // 1 if universe exists due to -partition flag
-  int nworlds;             // # of worlds in universe
-  int iworld;              // which world I am in
-  int *procs_per_world;    // # of procs in each world
-  int *root_proc;          // root proc in each world
-
-  MPI_Comm uorig;    // original communicator passed to LAMMPS instance
-  int *uni2orig;     // proc I in universe uworld is
-                     // proc uni2orig[I] in original communicator
-
-  Universe(class LAMMPS *, MPI_Comm);
-  ~Universe() override;
-  void reorder(char *, char *);
-  void add_world(char *);
-  int consistent();
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/update.h b/doc/includes/lammps/update.h
deleted file mode 100644
index b88e70134c..0000000000
--- a/doc/includes/lammps/update.h
+++ /dev/null
@@ -1,79 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_UPDATE_H
-#define LMP_UPDATE_H
-
-#include "pointers.h"
-
-#include <map>
-
-namespace LAMMPS_NS {
-
-class Update : protected Pointers {
- public:
-  double dt;                     // timestep
-  double etol, ftol;             // minimizer tolerances on energy/force
-  bigint ntimestep;              // current step (dynamics or min iterations)
-  int nsteps;                    // # of steps to run (dynamics or min iter)
-  int whichflag;                 // 0 for unset, 1 for dynamics, 2 for min
-  double atime;                  // simulation time at atimestep
-  bigint atimestep;              // last timestep atime was updated
-  bigint firststep, laststep;    // 1st & last step of this run
-  bigint beginstep, endstep;     // 1st and last step of multiple runs
-  int first_update;              // 0 before initial update, 1 after
-  int max_eval;                  // max force evaluations for minimizer
-  int restrict_output;           // 1 if output should not write dump/restart
-  int setupflag;                 // set when setup() is computing forces
-  int multireplica;              // 1 if min across replicas, else 0
-  int dt_default;                // 1 if dt is at default value, else 0
-
-  bigint eflag_global, eflag_atom;    // timestep global/peratom eng is tallied on
-  bigint vflag_global, vflag_atom;    // ditto for virial
-
-  char *unit_style;
-
-  class Integrate *integrate;
-  char *integrate_style;
-
-  class Min *minimize;
-  char *minimize_style;
-
-  typedef Integrate *(*IntegrateCreator)(LAMMPS *, int, char **);
-  typedef Min *(*MinimizeCreator)(LAMMPS *);
-
-  typedef std::map<std::string, IntegrateCreator> IntegrateCreatorMap;
-  typedef std::map<std::string, MinimizeCreator> MinimizeCreatorMap;
-
-  IntegrateCreatorMap *integrate_map;
-  MinimizeCreatorMap *minimize_map;
-
-  Update(class LAMMPS *);
-  ~Update() override;
-  void init();
-  void set_units(const char *);
-  void create_integrate(int, char **, int);
-  void create_minimize(int, char **, int);
-  void reset_timestep(int, char **);
-  void reset_timestep(bigint, bool);
-  void update_time();
-  double memory_usage();
-
- private:
-  void new_integrate(char *, int, char **, int, int &);
-  void new_minimize(char *, int, char **, int, int &);
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/utils.h b/doc/includes/lammps/utils.h
deleted file mode 100644
index 6726240d0d..0000000000
--- a/doc/includes/lammps/utils.h
+++ /dev/null
@@ -1,672 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_UTILS_H
-#define LMP_UTILS_H
-
-/*! \file utils.h */
-
-#include "fmt/format.h"
-#include "lmptype.h"
-
-#include <mpi.h>
-
-#include <vector>    // IWYU pragma: export
-
-namespace LAMMPS_NS {
-
-// forward declarations
-class Error;
-class LAMMPS;
-
-namespace utils {
-
-  /*! Match text against a simplified regex pattern
-   *
-   *  \param text the text to be matched against the pattern
-   *  \param pattern the search pattern, which may contain regexp markers
-   *  \return true if the pattern matches, false if not */
-
-  bool strmatch(const std::string &text, const std::string &pattern);
-
-  /*! Find sub-string that matches a simplified regex pattern
-   *
-   *  \param text the text to be matched against the pattern
-   *  \param pattern the search pattern, which may contain regexp markers
-   *  \return the string that matches the pattern or an empty one */
-
-  std::string strfind(const std::string &text, const std::string &pattern);
-
-  /*! Print error message about missing arguments for command
-   *
-   * This function simplifies the repetitive reporting missing arguments to a command.
-   *
-   *  \param file     name of source file for error message
-   *  \param line     line number in source file for error message
-   *  \param cmd      name of the failing command
-   *  \param error    pointer to Error class instance (for abort) or nullptr */
-
-  void missing_cmd_args(const std::string &file, int line, const std::string &cmd, Error *error);
-
-  /* Internal function handling the argument list for logmesg(). */
-
-  void fmtargs_logmesg(LAMMPS *lmp, fmt::string_view format, fmt::format_args args);
-
-  /*! Send formatted message to screen and logfile, if available
-   *
-   * This function simplifies the repetitive task of outputting some
-   * message to both the screen and/or the log file. The template
-   * wrapper with fmtlib format and argument processing allows
-   * this function to work similar to ``fmt::print()``.
-   *
-   *  \param lmp    pointer to LAMMPS class instance
-   *  \param format format string of message to be printed
-   *  \param args   arguments to format string */
-
-  template <typename S, typename... Args> void logmesg(LAMMPS *lmp, const S &format, Args &&...args)
-  {
-    fmtargs_logmesg(lmp, format, fmt::make_args_checked<Args...>(format, args...));
-  }
-
-  /*! \overload
-   *
-   *  \param lmp    pointer to LAMMPS class instance
-   *  \param mesg   string with message to be printed */
-
-  void logmesg(LAMMPS *lmp, const std::string &mesg);
-
-  /*! Return text redirecting the user to a specific paragraph in the manual
-   *
-   * The LAMMPS manual contains detailed detailed explanations for errors and
-   * warnings where a simple error message may not be sufficient.  These can
-   * be reached through URLs with a numeric code.  This function creates the
-   * corresponding text to be included into the error message that redirects
-   * the user to that URL.
-   *
-   *  \param errorcode   number pointing to a paragraph in the manual */
-
-  std::string errorurl(int errorcode);
-
-  /*! Flush output buffers
-   *
-   *  This function calls fflush() on screen and logfile FILE pointers
-   *  if available and thus tells the operating system to output all
-   *  currently buffered data. This is local operation and independent
-   *  from buffering by a file system or an MPI library.
-   */
-
-  void flush_buffers(LAMMPS *lmp);
-
-  /*! Return a string representing the current system error status
-   *
-   *  This is a wrapper around calling strerror(errno).
-   *
-   *  \return  error string */
-
-  std::string getsyserror();
-
-  /*! Wrapper around fgets() which reads whole lines but truncates the
-   *  data to the buffer size and ensures a newline char at the end.
-   *
-   *  This function is useful for reading line based text files with
-   *  possible comments that should be parsed later. This applies to
-   *  data files, potential files, atomfile variable files and so on.
-   *  It is used instead of fgets() by utils::read_lines_from_file().
-   *
-   *  \param s        buffer for storing the result of fgets()
-   *  \param size     size of buffer s (max number of bytes returned)
-   *  \param fp       file pointer used by fgets() */
-
-  char *fgets_trunc(char *s, int size, FILE *fp);
-
-  /*! Safe wrapper around fgets() which aborts on errors
-   *  or EOF and prints a suitable error message to help debugging.
-   *
-   *  Use nullptr as the error parameter to avoid the abort on EOF or error.
-   *
-   *  \param srcname  name of the calling source file (from FLERR macro)
-   *  \param srcline  line in the calling source file (from FLERR macro)
-   *  \param s        buffer for storing the result of fgets()
-   *  \param size     size of buffer s (max number of bytes read by fgets())
-   *  \param fp       file pointer used by fgets()
-   *  \param filename file name associated with fp (may be a null pointer; then LAMMPS will try to detect)
-   *  \param error    pointer to Error class instance (for abort) or nullptr */
-
-  void sfgets(const char *srcname, int srcline, char *s, int size, FILE *fp, const char *filename,
-              Error *error);
-
-  /*! Safe wrapper around fread() which aborts on errors
-   *  or EOF and prints a suitable error message to help debugging.
-   *
-   *  Use nullptr as the error parameter to avoid the abort on EOF or error.
-   *
-   *  \param srcname  name of the calling source file (from FLERR macro)
-   *  \param srcline  line in the calling source file (from FLERR macro)
-   *  \param s        buffer for storing the result of fread()
-   *  \param size     size of data elements read by fread()
-   *  \param num      number of data elements read by fread()
-   *  \param fp       file pointer used by fread()
-   *  \param filename file name associated with fp (may be a null pointer; then LAMMPS will try to detect)
-   *  \param error    pointer to Error class instance (for abort) or nullptr */
-
-  void sfread(const char *srcname, int srcline, void *s, size_t size, size_t num, FILE *fp,
-              const char *filename, Error *error);
-
-  /*! Read N lines of text from file into buffer and broadcast them
-   *
-   * This function uses repeated calls to fread() to fill a buffer with
-   * newline terminated text.  If a line does not end in a newline (e.g.
-   * at the end of a file), it is added.  The caller has to allocate an
-   * nlines by nmax sized buffer for storing the text data.
-   * Reading is done by MPI rank 0 of the given communicator only, and
-   * thus only MPI rank 0 needs to provide a valid file pointer.
-   *
-   *  \param fp       file pointer used by fread
-   *  \param nlines   number of lines to be read
-   *  \param nmax     maximum length of a single line
-   *  \param buffer   buffer for storing the data.
-   *  \param me       MPI rank of calling process in MPI communicator
-   *  \param comm     MPI communicator for broadcast
-   *  \return         1 if the read was short, 0 if read was successful */
-
-  int read_lines_from_file(FILE *fp, int nlines, int nmax, char *buffer, int me, MPI_Comm comm);
-
-  /*! Report if a requested style is in a package or may have a typo
-   *
-   *  \param style type of style that is to be checked for
-   *  \param name  name of style that was not found
-   *  \param lmp   pointer to top-level LAMMPS class instance
-   *  \return string usable for error messages */
-
-  std::string check_packages_for_style(const std::string &style, const std::string &name,
-                                       LAMMPS *lmp);
-
-  /*! Convert a string to a boolean while checking whether it is a valid boolean term.
-   *  Valid terms are 'yes', 'no', 'true', 'false', 'on', 'off', and '1', '0'. Only
-   *  lower case is accepted.
-   *
-   *  \param file     name of source file for error message
-   *  \param line     line number in source file for error message
-   *  \param str      string to be converted to logical
-   *  \param do_abort determines whether to call Error::one() or Error::all()
-   *  \param lmp      pointer to top-level LAMMPS class instance
-   *  \return         1 if string resolves to "true", otherwise 0 */
-
-  int logical(const char *file, int line, const std::string &str, bool do_abort, LAMMPS *lmp);
-
-  /*! \overload
-   *
-   *  \param file     name of source file for error message
-   *  \param line     line number in source file for error message
-   *  \param str      string to be converted to logical
-   *  \param do_abort determines whether to call Error::one() or Error::all()
-   *  \param lmp      pointer to top-level LAMMPS class instance
-   *  \return         1 if string resolves to "true", otherwise 0 */
-
-  int logical(const char *file, int line, const char *str, bool do_abort, LAMMPS *lmp);
-
-  /*! Convert a string to a floating point number while checking
-   *  if it is a valid floating point or integer number
-   *
-   *  \param file     name of source file for error message
-   *  \param line     line number in source file for error message
-   *  \param str      string to be converted to number
-   *  \param do_abort determines whether to call Error::one() or Error::all()
-   *  \param lmp      pointer to top-level LAMMPS class instance
-   *  \return         double precision floating point number */
-
-  double numeric(const char *file, int line, const std::string &str, bool do_abort, LAMMPS *lmp);
-
-  /*! \overload
-   *
-   *  \param file     name of source file for error message
-   *  \param line     line number in source file for error message
-   *  \param str      string to be converted to number
-   *  \param do_abort determines whether to call Error::one() or Error::all()
-   *  \param lmp      pointer to top-level LAMMPS class instance
-   *  \return         double precision floating point number */
-
-  double numeric(const char *file, int line, const char *str, bool do_abort, LAMMPS *lmp);
-
-  /*! Convert a string to an integer number while checking
-   *  if it is a valid integer number (regular int)
-   *
-   *  \param file     name of source file for error message
-   *  \param line     line number in source file for error message
-   *  \param str      string to be converted to number
-   *  \param do_abort determines whether to call Error::one() or Error::all()
-   *  \param lmp      pointer to top-level LAMMPS class instance
-   *  \return         integer number (regular int)  */
-
-  int inumeric(const char *file, int line, const std::string &str, bool do_abort, LAMMPS *lmp);
-
-  /*! \overload
-   *
-   *  \param file     name of source file for error message
-   *  \param line     line number in source file for error message
-   *  \param str      string to be converted to number
-   *  \param do_abort determines whether to call Error::one() or Error::all()
-   *  \param lmp      pointer to top-level LAMMPS class instance
-   *  \return         double precision floating point number */
-
-  int inumeric(const char *file, int line, const char *str, bool do_abort, LAMMPS *lmp);
-
-  /*! Convert a string to an integer number while checking
-   *  if it is a valid integer number (bigint)
-   *
-   *  \param file     name of source file for error message
-   *  \param line     line number in source file for error message
-   *  \param str      string to be converted to number
-   *  \param do_abort determines whether to call Error::one() or Error::all()
-   *  \param lmp      pointer to top-level LAMMPS class instance
-   *  \return         integer number (bigint) */
-
-  bigint bnumeric(const char *file, int line, const std::string &str, bool do_abort, LAMMPS *lmp);
-
-  /*! \overload
-   *
-   *  \param file     name of source file for error message
-   *  \param line     line number in source file for error message
-   *  \param str      string to be converted to number
-   *  \param do_abort determines whether to call Error::one() or Error::all()
-   *  \param lmp      pointer to top-level LAMMPS class instance
-   *  \return         double precision floating point number */
-
-  bigint bnumeric(const char *file, int line, const char *str, bool do_abort, LAMMPS *lmp);
-
-  /*! Convert a string to an integer number while checking
-   *  if it is a valid integer number (tagint)
-   *
-   * \param file     name of source file for error message
-   * \param line     line number in source file for error message
-   * \param str      string to be converted to number
-   * \param do_abort determines whether to call Error::one() or Error::all()
-   * \param lmp      pointer to top-level LAMMPS class instance
-   * \return         integer number (tagint) */
-
-  tagint tnumeric(const char *file, int line, const std::string &str, bool do_abort, LAMMPS *lmp);
-
-  /*! \overload
-   *
-   *  \param file     name of source file for error message
-   *  \param line     line number in source file for error message
-   *  \param str      string to be converted to number
-   *  \param do_abort determines whether to call Error::one() or Error::all()
-   *  \param lmp      pointer to top-level LAMMPS class instance
-   *  \return         double precision floating point number */
-
-  tagint tnumeric(const char *file, int line, const char *str, bool do_abort, LAMMPS *lmp);
-
-  /*! Compute index bounds derived from a string with a possible wildcard
-   *
-   * This functions processes the string in *str* and set the values of *nlo*
-   * and *nhi* according to the following five cases:
-   *
-   * - a single number, i: nlo = i; nhi = i;
-   * - a single asterisk, \*: nlo = nmin; nhi = nmax;
-   * - a single number followed by an asterisk, i\*: nlo = i; nhi = nmax;
-   * - a single asterisk followed by a number, \*i: nlo = nmin; nhi = i;
-   * - two numbers with an asterisk in between. i\*j: nlo = i; nhi = j;
-   *
-   * \param file     name of source file for error message
-   * \param line     line number in source file for error message
-   * \param str      string to be processed
-   * \param nmin     smallest possible lower bound
-   * \param nmax     largest allowed upper bound
-   * \param nlo      lower bound
-   * \param nhi      upper bound
-   * \param error    pointer to Error class for out-of-bounds messages */
-
-  template <typename TYPE>
-  void bounds(const char *file, int line, const std::string &str, bigint nmin, bigint nmax,
-              TYPE &nlo, TYPE &nhi, Error *error);
-
-  /*! Expand list of arguments when containing fix/compute wildcards
-   *
-   *  This function searches the list of arguments in *arg* for strings
-   *  of the kind c_ID[*] or f_ID[*] referring to computes or fixes.
-   *  Any such strings are replaced by one or more strings with the
-   *  '*' character replaced by the corresponding possible numbers as
-   *  determined from the fix or compute instance.  Other strings are
-   *  just copied. If the *mode* parameter is set to 0, expand global
-   *  vectors, but not global arrays; if it is set to 1, expand global
-   *  arrays (by column) but not global vectors.
-   *
-   *  If any expansion happens, the earg list and all its
-   *  strings are new allocations and must be freed explicitly by the
-   *  caller. Otherwise arg and earg will point to the same address
-   *  and no explicit de-allocation is needed by the caller.
-   *
-   * \param file  name of source file for error message
-   * \param line  line number in source file for error message
-   * \param narg  number of arguments in current list
-   * \param arg   argument list, possibly containing wildcards
-   * \param mode  select between global vectors(=0) and arrays (=1)
-   * \param earg  new argument list with wildcards expanded
-   * \param lmp   pointer to top-level LAMMPS class instance
-   * \return      number of arguments in expanded list */
-
-  int expand_args(const char *file, int line, int narg, char **arg, int mode, char **&earg,
-                  LAMMPS *lmp);
-
-  /*! Make C-style copy of string in new storage
-   *
-   * This allocates a storage buffer and copies the C-style or
-   * C++ style string into it.  The buffer is allocated with "new"
-   * and thus needs to be deallocated with "delete[]".
-   *
-   * \param text  string that should be copied
-   * \return new buffer with copy of string */
-
-  char *strdup(const std::string &text);
-
-  /*! Convert string to lowercase
-   *
-   * \param line  string that should be converted
-   * \return new string with all lowercase characters */
-
-  std::string lowercase(const std::string &line);
-
-  /*! Convert string to uppercase
-   *
-   * \param line  string that should be converted
-   * \return new string with all uppercase characters */
-
-  std::string uppercase(const std::string &line);
-
-  /*! Trim leading and trailing whitespace. Like TRIM() in Fortran.
-   *
-   * \param line  string that should be trimmed
-   * \return new string without whitespace (string) */
-
-  std::string trim(const std::string &line);
-
-  /*! Return string with anything from the first '#' character onward removed
-   *
-   * \param line  string that should be trimmed
-   * \return new string without comment (string) */
-
-  std::string trim_comment(const std::string &line);
-
-  /*! Replace first '*' character in a string with a number, optionally zero-padded
-   *
-   * If there is no '*' character in the string, return the original string.
-   * If the number requires more characters than the value of the *pad*
-   * argument, do not add zeros; otherwise add as many zeroes as needed to
-   * the left to make the the number representation *pad* characters wide.
-   *
-   * \param name  string with file containing a '*' (or not)
-   * \param step  step number to replace the (first) '*'
-   * \param pad   zero-padding (may be zero)
-   * \return  processed string */
-
-  std::string star_subst(const std::string &name, bigint step, int pad);
-
-  /*! Check if a string will likely have UTF-8 encoded characters
-   *
-   * UTF-8 uses the 7-bit standard ASCII table for the first 127 characters and
-   * all other characters are encoded as multiple bytes.  For the multi-byte
-   * characters the first byte has either the highest two, three, or four bits
-   * set followed by a zero bit and followed by one, two, or three more bytes,
-   * respectively, where the highest bit is set and the second highest bit set
-   * to 0.  The remaining bits combined are the character code, which is thus
-   * limited to 21-bits.
-   *
-   * For the sake of efficiency this test only checks if a character in the string
-   * has the highest bit set and thus is very likely an UTF-8 character.  It will
-   * not be able to tell this this is a valid UTF-8 character or whether it is a
-   * 2-byte, 3-byte, or 4-byte character.
-   *
-\verbatim embed:rst
-
-*See also*
-   :cpp:func:`utils::utf8_subst`
-
-\endverbatim
-   * \param line  string that should be checked
-   * \return true if string contains UTF-8 encoded characters (bool) */
-
-  inline bool has_utf8(const std::string &line)
-  {
-    for (auto c : line)
-      if (c & 0x80U) return true;
-    return false;
-  }
-
-  /*! Replace known UTF-8 characters with ASCII equivalents
-   *
-\verbatim embed:rst
-
-*See also*
-   :cpp:func:`utils::has_utf8`
-
-\endverbatim
-   * \param line  string that should be converted
-   * \return new string with ascii replacements (string) */
-
-  std::string utf8_subst(const std::string &line);
-
-  /*! Count words in string with custom choice of separating characters
-   *
-   * \param text string that should be searched
-   * \param separators string containing characters that will be treated as whitespace
-   * \return number of words found */
-
-  size_t count_words(const std::string &text, const std::string &separators);
-
-  /*! Count words in string, ignore any whitespace matching " \t\r\n\f"
-   *
-   * \param text string that should be searched
-   * \return number of words found */
-
-  size_t count_words(const std::string &text);
-
-  /*! Count words in C-string, ignore any whitespace matching " \t\r\n\f"
-   *
-   * \param text string that should be searched
-   * \return number of words found */
-
-  size_t count_words(const char *text);
-
-  /*! Count words in a single line, trim anything from '#' onward
-   *
-   * \param text string that should be trimmed and searched
-   * \param separators string containing characters that will be treated as whitespace
-   * \return number of words found */
-
-  size_t trim_and_count_words(const std::string &text, const std::string &separators = " \t\r\n\f");
-
-  /*! Take text and split into non-whitespace words.
-   *
-   * This can handle strings with single and double quotes, escaped quotes,
-   * and escaped codes within quotes, but due to using an STL container and
-   * STL strings is rather slow because of making copies. Designed for
-   * parsing command lines and similar text and not for time critical
-   * processing.  Use a tokenizer class if performance matters.
-   *
-\verbatim embed:rst
-
-*See also*
-   :cpp:class:`Tokenizer`, :cpp:class:`ValueTokenizer`
-
-\endverbatim
-   * \param text string that should be split
-   * \return STL vector with the words */
-
-  std::vector<std::string> split_words(const std::string &text);
-
-  /*! Take multi-line text and split into lines
-   *
-   * \param text string that should be split
-   * \return STL vector with the lines */
-  std::vector<std::string> split_lines(const std::string &text);
-
-  /*! Check if string can be converted to valid integer
-   *
-   * \param str string that should be checked
-   * \return true, if string contains valid a integer, false otherwise */
-
-  bool is_integer(const std::string &str);
-
-  /*! Check if string can be converted to valid floating-point number
-   *
-   * \param str string that should be checked
-   * \return true, if string contains valid number, false otherwise */
-
-  bool is_double(const std::string &str);
-
-  /*! Check if string is a valid ID
-   * ID strings may contain only letters, numbers, and underscores.
-   *
-   * \param str string that should be checked
-   * \return true, if string contains valid id, false otherwise */
-
-  bool is_id(const std::string &str);
-
-  /*! Determine full path of potential file. If file is not found in current directory,
-   *  search directories listed in LAMMPS_POTENTIALS environment variable
-   *
-   * \param path file path
-   * \return full path to potential file */
-
-  std::string get_potential_file_path(const std::string &path);
-
-  /*! Read potential file and return DATE field if it is present
-   *
-   * \param path file path
-   * \param potential_name name of potential that is being read
-   * \return DATE field if present */
-
-  std::string get_potential_date(const std::string &path, const std::string &potential_name);
-
-  /*! Read potential file and return UNITS field if it is present
-   *
-   * \param path file path
-   * \param potential_name name of potential that is being read
-   * \return UNITS field if present */
-
-  std::string get_potential_units(const std::string &path, const std::string &potential_name);
-
-  enum { NOCONVERT = 0, METAL2REAL = 1, REAL2METAL = 1 << 1 };
-  enum { UNKNOWN = 0, ENERGY };
-
-  /*! Return bitmask of available conversion factors for a given property
-   *
-   * \param property property to be converted
-   * \return bitmask indicating available conversions */
-
-  int get_supported_conversions(const int property);
-
-  /*! Return unit conversion factor for given property and selected from/to units
-   *
-   * \param property property to be converted
-   * \param conversion constant indicating the conversion
-   * \return conversion factor */
-
-  double get_conversion_factor(const int property, const int conversion);
-
-  /*! Open a potential file as specified by *name*
-   *
-   * If opening the file directly fails, the function will search for
-   * it in the list of folder pointed to by the environment variable
-   * ``LAMMPS_POTENTIALS`` (if it is set).
-   *
-   * If the potential file has a ``UNITS`` tag in the first line, the
-   * tag's value is compared to the current unit style setting.
-   * The behavior of the function then depends on the value of the
-   * *auto_convert* parameter.  If it is a null pointer, then the unit
-   * values must match or else the open will fail with an error.  Otherwise
-   * the bitmask that *auto_convert* points to is used check for
-   * compatibility with possible automatic conversions by the calling
-   * function.  If compatible, the bitmask is set to the required
-   * conversion or ``utils::NOCONVERT``.
-   *
-   * \param name          file- or pathname of the potential file
-   * \param lmp           pointer to top-level LAMMPS class instance
-   * \param auto_convert  pointer to unit conversion bitmask or ``nullptr``
-   * \return              FILE pointer of the opened potential file or ``nullptr`` */
-
-  FILE *open_potential(const std::string &name, LAMMPS *lmp, int *auto_convert);
-
-  /*! Convert a time string to seconds
-   *
-   * The strings "off" and "unlimited" result in -1
-   *
-   * \param timespec a string in the following format: ([[HH:]MM:]SS)
-   * \return total in seconds */
-
-  double timespec2seconds(const std::string &timespec);
-
-  /*! Convert a LAMMPS version date to a number
-   *
-   * This will generate a number YYYYMMDD from a date string
-   * (with or without blanks) that is suitable for numerical
-   * comparisons, i.e. later dates will generate a larger number.
-   *
-   * The day may or may not have a leading zero, the month
-   * is identified by the first 3 letters (so there may be more)
-   * and the year may be 2 or 4 digits (the missing 2 digits will
-   * be assumed as 20. That is 04 corresponds to 2004).
-   *
-   * No check is made whether the date is valid.
-   *
-   * \param  date  string in the format (Day Month Year)
-   * \return       date code */
-
-  int date2num(const std::string &date);
-
-  /*! Return current date as string
-   *
-   * This will generate a string containing the current date in YYYY-MM-DD format.
-   *
-   * \return       string with current date */
-
-  std::string current_date();
-
-  /*! Binary search in a vector of ascending doubles of length N
-   *
-   * If the value is smaller than the smallest value in the vector, 0 is returned.
-   * If the value is larger or equal than the largest value in the vector, N-1 is returned.
-   * Otherwise the index that satisfies the condition
-   *
-   * haystack[index] <= value < haystack[index+1]
-   *
-   * is returned, i.e. a value from 1 to N-2. Note that if there are tied values in the
-   * haystack, always the larger index is returned as only that satisfied the condition.
-   *
-   * \param  needle    search value for which are are looking for the closest index
-   * \param  n         size of the haystack array
-   * \param  haystack  array with data in ascending order.
-   * \return           index of value in the haystack array smaller or equal to needle */
-  int binary_search(const double needle, const int n, const double *haystack);
-
-  /*! Custom merge sort implementation
-   *
-   * This function provides a custom upward hybrid merge sort
-   * implementation with support to pass an opaque pointer to
-   * the comparison function, e.g. for access to class members.
-   * This avoids having to use global variables.  For improved
-   * performance, it uses an in-place insertion sort on initial
-   * chunks of up to 64 elements and switches to merge sort from
-   * then on.
-   *
-   * \param  index  Array with indices to be sorted
-   * \param  num    Length of the index array
-   * \param  ptr    Pointer to opaque object passed to comparison function
-   * \param  comp   Pointer to comparison function */
-
-  void merge_sort(int *index, int num, void *ptr, int (*comp)(int, int, void *));
-}    // namespace utils
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/includes/lammps/variable.h b/doc/includes/lammps/variable.h
deleted file mode 100644
index 52632ba6ce..0000000000
--- a/doc/includes/lammps/variable.h
+++ /dev/null
@@ -1,170 +0,0 @@
-/* -*- c++ -*- ----------------------------------------------------------
-   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-   https://www.lammps.org/, Sandia National Laboratories
-   Steve Plimpton, sjplimp@sandia.gov
-
-   Copyright (2003) Sandia Corporation.  Under the terms of Contract
-   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
-   certain rights in this software.  This software is distributed under
-   the GNU General Public License.
-
-   See the README file in the top-level LAMMPS directory.
-------------------------------------------------------------------------- */
-
-#ifndef LMP_VARIABLE_H
-#define LMP_VARIABLE_H
-
-#include "pointers.h"
-
-namespace LAMMPS_NS {
-class Region;
-
-class Variable : protected Pointers {
-  friend class Info;
-
- public:
-  Variable(class LAMMPS *);
-  ~Variable() override;
-  void set(int, char **);
-  void set(const std::string &);
-  void set(char *, int, char **);
-  int set_string(const char *, const char *);
-  int next(int, char **);
-
-  int find(const char *);
-  void set_arrays(int);
-  void python_command(int, char **);
-
-  int equalstyle(int);
-  int atomstyle(int);
-  int vectorstyle(int);
-  char *pythonstyle(char *, char *);
-  int internalstyle(int);
-
-  char *retrieve(const char *);
-  double compute_equal(int);
-  double compute_equal(const std::string &);
-  void compute_atom(int, int, double *, int, int);
-  int compute_vector(int, double **);
-  void internal_set(int, double);
-
-  tagint int_between_brackets(char *&, int);
-  double evaluate_boolean(char *);
-
- public:
-  int nvar;        // # of defined variables
-  char **names;    // name of each variable
-
-  // must match "varstyles" array in info.cpp
-  enum {
-    INDEX,
-    LOOP,
-    WORLD,
-    UNIVERSE,
-    ULOOP,
-    STRING,
-    GETENV,
-    SCALARFILE,
-    ATOMFILE,
-    FORMAT,
-    EQUAL,
-    ATOM,
-    VECTOR,
-    PYTHON,
-    TIMER,
-    INTERNAL
-  };
-  static constexpr int VALUELENGTH = 64;
-
- private:
-  int me;
-  int maxvar;                  // max # of variables following lists can hold
-  int *style;                  // style of each variable
-  int *num;                    // # of values for each variable
-  int *which;                  // next available value for each variable
-  int *pad;                    // 1 = pad loop/uloop variables with 0s, 0 = no pad
-  class VarReader **reader;    // variable that reads from file
-  char ***data;                // str value of each variable's values
-  double *dvalue;              // single numeric value for internal variables
-
-  struct VecVar {
-    int n, nmax;
-    bigint currentstep;
-    double *values;
-  };
-  VecVar *vecs;
-
-  int *eval_in_progress;    // flag if evaluation of variable is in progress
-  int treetype;             // ATOM or VECTOR flag for formula evaluation
-
-  class RanMars *randomequal;    // random number generator for equal-style vars
-  class RanMars *randomatom;     // random number generator for atom-style vars
-
-  int precedence[18];    // precedence level of math operators
-                         // set length to include up to XOR in enum
-
-  struct Tree {              // parse tree for atom-style or vector-style vars
-    double value;            // single scalar
-    double *array;           // per-atom or per-type list of doubles
-    int *iarray;             // per-atom list of ints
-    bigint *barray;          // per-atom list of bigints
-    int type;                // operation, see enum{} in variable.cpp
-    int nvector;             // length of array for vector-style variable
-    int nstride;             // stride between atoms if array is a 2d array
-    int selfalloc;           // 1 if array is allocated here, else 0
-    int ivalue;              // extra value needed for gmask, grmask
-    int nextra;              // # of additional args beyond first 2
-    Region *region;          // region pointer for rmask, grmask
-    Tree *first, *second;    // ptrs further down tree for first 2 args
-    Tree **extra;            // ptrs further down tree for nextra args
-
-    Tree() :
-        array(nullptr), iarray(nullptr), barray(nullptr), selfalloc(0), ivalue(0), nextra(0),
-        region(nullptr), first(nullptr), second(nullptr), extra(nullptr)
-    {
-    }
-  };
-
-  int compute_python(int);
-  void remove(int);
-  void grow();
-  void copy(int, char **, char **);
-  double evaluate(char *, Tree **, int);
-  double collapse_tree(Tree *);
-  double eval_tree(Tree *, int);
-  int size_tree_vector(Tree *);
-  int compare_tree_vector(int, int);
-  void free_tree(Tree *);
-  int find_matching_paren(char *, int, char *&, int);
-  int math_function(char *, char *, Tree **, Tree **, int &, double *, int &, int);
-  int group_function(char *, char *, Tree **, Tree **, int &, double *, int &, int);
-  Region *region_function(char *, int);
-  int special_function(char *, char *, Tree **, Tree **, int &, double *, int &, int);
-  void peratom2global(int, char *, double *, int, tagint, Tree **, Tree **, int &, double *, int &);
-  int is_atom_vector(char *);
-  void atom_vector(char *, Tree **, Tree **, int &);
-  int parse_args(char *, char **);
-  char *find_next_comma(char *);
-  void print_var_error(const std::string &, int, const std::string &, int, int global = 1);
-  void print_tree(Tree *, int);
-};
-
-class VarReader : protected Pointers {
- public:
-  class FixStore *fixstore;
-  char *id_fix;
-
-  VarReader(class LAMMPS *, char *, char *, int);
-  ~VarReader() override;
-  int read_scalar(char *);
-  int read_peratom();
-
- private:
-  int me, style;
-  FILE *fp;
-  char *buffer;
-};
-
-}    // namespace LAMMPS_NS
-
-#endif
diff --git a/doc/liblammps.0.dylib b/doc/liblammps.0.dylib
deleted file mode 100755
index fd5fa7f9d4..0000000000
Binary files a/doc/liblammps.0.dylib and /dev/null differ
diff --git a/doc/liblammps.dylib b/doc/liblammps.dylib
deleted file mode 120000
index 50ed7e2a61..0000000000
--- a/doc/liblammps.dylib
+++ /dev/null
@@ -1 +0,0 @@
-liblammps.0.dylib
\ No newline at end of file
diff --git a/doc/liblammps.pc b/doc/liblammps.pc
deleted file mode 100644
index 645116ca9a..0000000000
--- a/doc/liblammps.pc
+++ /dev/null
@@ -1,32 +0,0 @@
-# pkg-config file for lammps
-# https://people.freedesktop.org/~dbn/pkg-config-guide.html
-
-# Add the directory where lammps.pc got installed to your PKG_CONFIG_PATH
-# e.g. export PKG_CONFIG_PATH=/Users/ngoccuongnguyen/.local/lib/pkgconfig
-
-# Use this on commandline with:
-# c++ `pkg-config --cflags --libs lammps` -o myapp myapp.cpp
-
-# Use this in a Makefile:
-# myapp: myapp.cpp
-# 	$(CC) `pkg-config --cflags --libs lammps` -o $@ $<
-
-# Use this in autotools:
-# configure.ac:
-# PKG_CHECK_MODULES([LAMMPS], [lammps])
-# Makefile.am:
-# myapp_CFLAGS = $(LAMMPS_CFLAGS)
-# myapp_LDADD = $(LAMMPS_LIBS)
-
-prefix=/Users/ngoccuongnguyen/.local
-libdir=/Users/ngoccuongnguyen/.local/lib
-includedir=/Users/ngoccuongnguyen/.local/include
-
-Name: liblammps
-Description: Large-scale Atomic/Molecular Massively Parallel Simulator Library
-URL: https://www.lammps.org
-Version: 20220602
-Requires:
-Libs: -L${libdir} -llammps
-Libs.private: -lm
-Cflags: -I${includedir}  -DLAMMPS_SMALLBIG -DLAMMPS_EXCEPTIONS
diff --git a/doc/lmp b/doc/lmp
deleted file mode 100755
index 30e32b5f30..0000000000
Binary files a/doc/lmp and /dev/null differ
diff --git a/doc/styles/lmpgitversion.h b/doc/styles/lmpgitversion.h
deleted file mode 100644
index d7f80bca10..0000000000
--- a/doc/styles/lmpgitversion.h
+++ /dev/null
@@ -1,8 +0,0 @@
-#ifndef LMP_GIT_VERSION_H
-#define LMP_GIT_VERSION_H
-bool LAMMPS_NS::LAMMPS::has_git_info() { return true; }
-const char *LAMMPS_NS::LAMMPS::git_commit() { return "3ae84a3b3f5552f180f29638cd630afc072a9e52"; }
-const char *LAMMPS_NS::LAMMPS::git_branch() { return "pod"; }
-const char *LAMMPS_NS::LAMMPS::git_descriptor() { return "patch_2Jun2022-37-g3ae84a3b3f-modified"; }
-#endif
-
diff --git a/doc/styles/lmpgitversion.h.tmp b/doc/styles/lmpgitversion.h.tmp
deleted file mode 100644
index d7f80bca10..0000000000
--- a/doc/styles/lmpgitversion.h.tmp
+++ /dev/null
@@ -1,8 +0,0 @@
-#ifndef LMP_GIT_VERSION_H
-#define LMP_GIT_VERSION_H
-bool LAMMPS_NS::LAMMPS::has_git_info() { return true; }
-const char *LAMMPS_NS::LAMMPS::git_commit() { return "3ae84a3b3f5552f180f29638cd630afc072a9e52"; }
-const char *LAMMPS_NS::LAMMPS::git_branch() { return "pod"; }
-const char *LAMMPS_NS::LAMMPS::git_descriptor() { return "patch_2Jun2022-37-g3ae84a3b3f-modified"; }
-#endif
-
diff --git a/doc/styles/lmpinstalledpkgs.h b/doc/styles/lmpinstalledpkgs.h
deleted file mode 100644
index d8a0981dde..0000000000
--- a/doc/styles/lmpinstalledpkgs.h
+++ /dev/null
@@ -1,14 +0,0 @@
-#ifndef LMP_INSTALLED_PKGS_H
-#define LMP_INSTALLED_PKGS_H
-const char * LAMMPS_NS::LAMMPS::installed_packages[] =  {
-  "KSPACE",
-  "MANYBODY",
-  "ML-POD",
-  "ML-SNAP",
-  "MOLECULE",
-  "PYTHON",
-  "RIGID",
-  NULL
-};
-#endif
-
diff --git a/doc/styles/lmpinstalledpkgs.h.tmp b/doc/styles/lmpinstalledpkgs.h.tmp
deleted file mode 100644
index d8a0981dde..0000000000
--- a/doc/styles/lmpinstalledpkgs.h.tmp
+++ /dev/null
@@ -1,14 +0,0 @@
-#ifndef LMP_INSTALLED_PKGS_H
-#define LMP_INSTALLED_PKGS_H
-const char * LAMMPS_NS::LAMMPS::installed_packages[] =  {
-  "KSPACE",
-  "MANYBODY",
-  "ML-POD",
-  "ML-SNAP",
-  "MOLECULE",
-  "PYTHON",
-  "RIGID",
-  NULL
-};
-#endif
-
diff --git a/doc/styles/packages_angle.h b/doc/styles/packages_angle.h
deleted file mode 100644
index 56e78bedfd..0000000000
--- a/doc/styles/packages_angle.h
+++ /dev/null
@@ -1,123 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "CG-SDK"
-#include "CG-SDK/angle_sdk.h"
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/angle_class2.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/angle_dipole.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_cosine_delta.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_cosine_periodic.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_cosine_shift.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_cosine_shift_exp.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_fourier.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_fourier_simple.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_gaussian.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_quartic.h"
-#undef PACKAGE
-#define PACKAGE "MOFFF"
-#include "MOFFF/angle_class2_p6.h"
-#undef PACKAGE
-#define PACKAGE "MOFFF"
-#include "MOFFF/angle_cosine_buck6d.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/angle_charmm.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/angle_cosine.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/angle_cosine_squared.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/angle_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/angle_table.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/angle_cross.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/angle_mm3.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/angle_charmm_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/angle_class2_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/angle_cosine_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/angle_harmonic_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/angle_charmm_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/angle_harmonic_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_charmm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_class2_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_delta_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_periodic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_shift_exp_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_shift_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_squared_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_dipole_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_fourier_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_fourier_simple_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_harmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_quartic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_sdk_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_table_omp.h"
diff --git a/doc/styles/packages_angle.h.tmp b/doc/styles/packages_angle.h.tmp
deleted file mode 100644
index 56e78bedfd..0000000000
--- a/doc/styles/packages_angle.h.tmp
+++ /dev/null
@@ -1,123 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "CG-SDK"
-#include "CG-SDK/angle_sdk.h"
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/angle_class2.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/angle_dipole.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_cosine_delta.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_cosine_periodic.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_cosine_shift.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_cosine_shift_exp.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_fourier.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_fourier_simple.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_gaussian.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/angle_quartic.h"
-#undef PACKAGE
-#define PACKAGE "MOFFF"
-#include "MOFFF/angle_class2_p6.h"
-#undef PACKAGE
-#define PACKAGE "MOFFF"
-#include "MOFFF/angle_cosine_buck6d.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/angle_charmm.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/angle_cosine.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/angle_cosine_squared.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/angle_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/angle_table.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/angle_cross.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/angle_mm3.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/angle_charmm_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/angle_class2_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/angle_cosine_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/angle_harmonic_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/angle_charmm_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/angle_harmonic_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_charmm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_class2_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_delta_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_periodic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_shift_exp_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_shift_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_cosine_squared_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_dipole_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_fourier_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_fourier_simple_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_harmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_quartic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_sdk_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/angle_table_omp.h"
diff --git a/doc/styles/packages_atom.h b/doc/styles/packages_atom.h
deleted file mode 100644
index 2bec7a6939..0000000000
--- a/doc/styles/packages_atom.h
+++ /dev/null
@@ -1,90 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "AWPMD"
-#include "AWPMD/atom_vec_wavepacket.h"
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/atom_vec_bpm_sphere.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/atom_vec_oxdna.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/atom_vec_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/atom_vec_dipole.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/atom_vec_edpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/atom_vec_mdpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/atom_vec_tdpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/atom_vec_dpd.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/atom_vec_electron.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/atom_vec_smd.h"
-#undef PACKAGE
-#define PACKAGE "MESONT"
-#include "MESONT/atom_vec_mesont.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/atom_vec_angle.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/atom_vec_bond.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/atom_vec_full.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/atom_vec_molecular.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/atom_vec_template.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/atom_vec_peri.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/atom_vec_sph.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/atom_vec_spin.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_angle_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_atomic_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_bond_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_charge_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_dpd_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_full_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_hybrid_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_molecular_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_sphere_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_spin_kokkos.h"
diff --git a/doc/styles/packages_atom.h.tmp b/doc/styles/packages_atom.h.tmp
deleted file mode 100644
index 2bec7a6939..0000000000
--- a/doc/styles/packages_atom.h.tmp
+++ /dev/null
@@ -1,90 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "AWPMD"
-#include "AWPMD/atom_vec_wavepacket.h"
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/atom_vec_bpm_sphere.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/atom_vec_oxdna.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/atom_vec_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/atom_vec_dipole.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/atom_vec_edpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/atom_vec_mdpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/atom_vec_tdpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/atom_vec_dpd.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/atom_vec_electron.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/atom_vec_smd.h"
-#undef PACKAGE
-#define PACKAGE "MESONT"
-#include "MESONT/atom_vec_mesont.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/atom_vec_angle.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/atom_vec_bond.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/atom_vec_full.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/atom_vec_molecular.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/atom_vec_template.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/atom_vec_peri.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/atom_vec_sph.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/atom_vec_spin.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_angle_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_atomic_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_bond_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_charge_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_dpd_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_full_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_hybrid_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_molecular_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_sphere_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/atom_vec_spin_kokkos.h"
diff --git a/doc/styles/packages_body.h b/doc/styles/packages_body.h
deleted file mode 100644
index 10db8c5538..0000000000
--- a/doc/styles/packages_body.h
+++ /dev/null
@@ -1,9 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/body_nparticle.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/body_rounded_polygon.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/body_rounded_polyhedron.h"
diff --git a/doc/styles/packages_body.h.tmp b/doc/styles/packages_body.h.tmp
deleted file mode 100644
index 10db8c5538..0000000000
--- a/doc/styles/packages_body.h.tmp
+++ /dev/null
@@ -1,9 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/body_nparticle.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/body_rounded_polygon.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/body_rounded_polyhedron.h"
diff --git a/doc/styles/packages_bond.h b/doc/styles/packages_bond.h
deleted file mode 100644
index b82a8ab810..0000000000
--- a/doc/styles/packages_bond.h
+++ /dev/null
@@ -1,108 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/bond_bpm_rotational.h"
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/bond_bpm_spring.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/bond_oxdna2_fene.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/bond_oxdna_fene.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/bond_oxrna2_fene.h"
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/bond_class2.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/bond_fene_nm.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/bond_gaussian.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/bond_harmonic_shift.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/bond_harmonic_shift_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/bond_nonlinear.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/bond_special.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_fene.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_fene_expand.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_gromos.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_morse.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_quartic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_table.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/bond_mm3.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/bond_class2_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/bond_fene_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/bond_harmonic_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/bond_fene_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/bond_harmonic_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_class2_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_fene_expand_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_fene_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_gromos_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_harmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_harmonic_shift_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_harmonic_shift_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_morse_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_nonlinear_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_quartic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_table_omp.h"
diff --git a/doc/styles/packages_bond.h.tmp b/doc/styles/packages_bond.h.tmp
deleted file mode 100644
index b82a8ab810..0000000000
--- a/doc/styles/packages_bond.h.tmp
+++ /dev/null
@@ -1,108 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/bond_bpm_rotational.h"
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/bond_bpm_spring.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/bond_oxdna2_fene.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/bond_oxdna_fene.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/bond_oxrna2_fene.h"
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/bond_class2.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/bond_fene_nm.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/bond_gaussian.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/bond_harmonic_shift.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/bond_harmonic_shift_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/bond_nonlinear.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/bond_special.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_fene.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_fene_expand.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_gromos.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_morse.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_quartic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/bond_table.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/bond_mm3.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/bond_class2_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/bond_fene_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/bond_harmonic_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/bond_fene_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/bond_harmonic_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_class2_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_fene_expand_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_fene_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_gromos_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_harmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_harmonic_shift_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_harmonic_shift_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_morse_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_nonlinear_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_quartic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/bond_table_omp.h"
diff --git a/doc/styles/packages_command.h b/doc/styles/packages_command.h
deleted file mode 100644
index a43ab14a62..0000000000
--- a/doc/styles/packages_command.h
+++ /dev/null
@@ -1,51 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "COLVARS"
-#include "COLVARS/group_ndx.h"
-#undef PACKAGE
-#define PACKAGE "COLVARS"
-#include "COLVARS/ndx_group.h"
-#undef PACKAGE
-#define PACKAGE "KIM"
-#include "KIM/kim_command.h"
-#undef PACKAGE
-#define PACKAGE "MDI"
-#include "MDI/mdi_command.h"
-#undef PACKAGE
-#define PACKAGE "PHONON"
-#include "PHONON/dynamical_matrix.h"
-#undef PACKAGE
-#define PACKAGE "PHONON"
-#include "PHONON/third_order.h"
-#undef PACKAGE
-#define PACKAGE "PLUGIN"
-#include "PLUGIN/plugin.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/hyper.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/neb.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/prd.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/tad.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/temper.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/temper_grem.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/temper_npt.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/neb_spin.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/dynamical_matrix_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/third_order_kokkos.h"
diff --git a/doc/styles/packages_command.h.tmp b/doc/styles/packages_command.h.tmp
deleted file mode 100644
index a43ab14a62..0000000000
--- a/doc/styles/packages_command.h.tmp
+++ /dev/null
@@ -1,51 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "COLVARS"
-#include "COLVARS/group_ndx.h"
-#undef PACKAGE
-#define PACKAGE "COLVARS"
-#include "COLVARS/ndx_group.h"
-#undef PACKAGE
-#define PACKAGE "KIM"
-#include "KIM/kim_command.h"
-#undef PACKAGE
-#define PACKAGE "MDI"
-#include "MDI/mdi_command.h"
-#undef PACKAGE
-#define PACKAGE "PHONON"
-#include "PHONON/dynamical_matrix.h"
-#undef PACKAGE
-#define PACKAGE "PHONON"
-#include "PHONON/third_order.h"
-#undef PACKAGE
-#define PACKAGE "PLUGIN"
-#include "PLUGIN/plugin.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/hyper.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/neb.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/prd.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/tad.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/temper.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/temper_grem.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/temper_npt.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/neb_spin.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/dynamical_matrix_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/third_order_kokkos.h"
diff --git a/doc/styles/packages_compute.h b/doc/styles/packages_compute.h
deleted file mode 100644
index 6e812c93a0..0000000000
--- a/doc/styles/packages_compute.h
+++ /dev/null
@@ -1,303 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/compute_erotate_asphere.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/compute_temp_asphere.h"
-#undef PACKAGE
-#define PACKAGE "BOCS"
-#include "BOCS/compute_pressure_bocs.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/compute_body_local.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/compute_temp_body.h"
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/compute_nbond_atom.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/compute_efield_atom.h"
-#undef PACKAGE
-#define PACKAGE "DIFFRACTION"
-#include "DIFFRACTION/compute_saed.h"
-#undef PACKAGE
-#define PACKAGE "DIFFRACTION"
-#include "DIFFRACTION/compute_xrd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/compute_edpd_temp_atom.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/compute_tdpd_cc_atom.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/compute_dpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/compute_dpd_atom.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/compute_temp_drude.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/compute_ke_atom_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/compute_ke_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/compute_temp_deform_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/compute_temp_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/compute_temp_region_eff.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_ackland_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_adf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_ave_sphere_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_basal_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_born_matrix.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_cnp_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_entropy_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_gyration_shape.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_gyration_shape_chunk.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_hexorder_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_hma.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_momentum.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_msd_nongauss.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_stress_cartesian.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_stress_cylinder.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_stress_mop.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_stress_mop_profile.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_stress_spherical.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_temp_rotate.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_ti.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/compute_fep.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/compute_fep_ta.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/compute_contact_atom.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/compute_fabric.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_contact_radius.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_damage.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_hourglass_error.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_internal_energy.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_plastic_strain.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_plastic_strain_rate.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_rho.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_defgrad.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_dt.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_num_neighs.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_shape.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_strain.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_strain_rate.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_stress.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_triangle_vertices.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_ulsph_effm.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_ulsph_num_neighs.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_ulsph_strain.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_ulsph_strain_rate.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_ulsph_stress.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_vol.h"
-#undef PACKAGE
-#define PACKAGE "MESONT"
-#include "MESONT/compute_mesont.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/compute_viscosity_cos.h"
-#undef PACKAGE
-#define PACKAGE "ML-IAP"
-#include "ML-IAP/compute_mliap.h"
-#undef PACKAGE
-#define PACKAGE "ML-SNAP"
-#include "ML-SNAP/compute_sna_atom.h"
-#undef PACKAGE
-#define PACKAGE "ML-SNAP"
-#include "ML-SNAP/compute_snad_atom.h"
-#undef PACKAGE
-#define PACKAGE "ML-SNAP"
-#include "ML-SNAP/compute_snap.h"
-#undef PACKAGE
-#define PACKAGE "ML-SNAP"
-#include "ML-SNAP/compute_snav_atom.h"
-#undef PACKAGE
-#define PACKAGE "ML-POD"
-#include "ML-POD/compute_podfit.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/compute_damage_atom.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/compute_dilatation_atom.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/compute_plasticity_atom.h"
-#undef PACKAGE
-#define PACKAGE "PTM"
-#include "PTM/compute_ptm_atom.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/compute_spec_atom.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/compute_event_displace.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/compute_pressure_grem.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/compute_erotate_rigid.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/compute_ke_rigid.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/compute_rigid_local.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/compute_sph_e_atom.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/compute_sph_rho_atom.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/compute_sph_t_atom.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/compute_spin.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_force_tally.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_heat_flux_tally.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_heat_flux_virial_tally.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_pe_mol_tally.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_pe_tally.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_stress_tally.h"
-#undef PACKAGE
-#define PACKAGE "UEF"
-#include "UEF/compute_pressure_uef.h"
-#undef PACKAGE
-#define PACKAGE "UEF"
-#include "UEF/compute_temp_uef.h"
-#undef PACKAGE
-#define PACKAGE "VORONOI"
-#include "VORONOI/compute_voronoi_atom.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/compute_temp_cs.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/compute_ave_sphere_atom_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/compute_coord_atom_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/compute_orientorder_atom_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/compute_temp_deform_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/compute_temp_kokkos.h"
diff --git a/doc/styles/packages_compute.h.tmp b/doc/styles/packages_compute.h.tmp
deleted file mode 100644
index 6e812c93a0..0000000000
--- a/doc/styles/packages_compute.h.tmp
+++ /dev/null
@@ -1,303 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/compute_erotate_asphere.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/compute_temp_asphere.h"
-#undef PACKAGE
-#define PACKAGE "BOCS"
-#include "BOCS/compute_pressure_bocs.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/compute_body_local.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/compute_temp_body.h"
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/compute_nbond_atom.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/compute_efield_atom.h"
-#undef PACKAGE
-#define PACKAGE "DIFFRACTION"
-#include "DIFFRACTION/compute_saed.h"
-#undef PACKAGE
-#define PACKAGE "DIFFRACTION"
-#include "DIFFRACTION/compute_xrd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/compute_edpd_temp_atom.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/compute_tdpd_cc_atom.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/compute_dpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/compute_dpd_atom.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/compute_temp_drude.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/compute_ke_atom_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/compute_ke_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/compute_temp_deform_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/compute_temp_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/compute_temp_region_eff.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_ackland_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_adf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_ave_sphere_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_basal_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_born_matrix.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_cnp_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_entropy_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_gyration_shape.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_gyration_shape_chunk.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_hexorder_atom.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_hma.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_momentum.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_msd_nongauss.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_stress_cartesian.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_stress_cylinder.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_stress_mop.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_stress_mop_profile.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_stress_spherical.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_temp_rotate.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-COMPUTE"
-#include "EXTRA-COMPUTE/compute_ti.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/compute_fep.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/compute_fep_ta.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/compute_contact_atom.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/compute_fabric.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_contact_radius.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_damage.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_hourglass_error.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_internal_energy.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_plastic_strain.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_plastic_strain_rate.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_rho.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_defgrad.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_dt.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_num_neighs.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_shape.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_strain.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_strain_rate.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_tlsph_stress.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_triangle_vertices.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_ulsph_effm.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_ulsph_num_neighs.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_ulsph_strain.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_ulsph_strain_rate.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_ulsph_stress.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/compute_smd_vol.h"
-#undef PACKAGE
-#define PACKAGE "MESONT"
-#include "MESONT/compute_mesont.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/compute_viscosity_cos.h"
-#undef PACKAGE
-#define PACKAGE "ML-IAP"
-#include "ML-IAP/compute_mliap.h"
-#undef PACKAGE
-#define PACKAGE "ML-SNAP"
-#include "ML-SNAP/compute_sna_atom.h"
-#undef PACKAGE
-#define PACKAGE "ML-SNAP"
-#include "ML-SNAP/compute_snad_atom.h"
-#undef PACKAGE
-#define PACKAGE "ML-SNAP"
-#include "ML-SNAP/compute_snap.h"
-#undef PACKAGE
-#define PACKAGE "ML-SNAP"
-#include "ML-SNAP/compute_snav_atom.h"
-#undef PACKAGE
-#define PACKAGE "ML-POD"
-#include "ML-POD/compute_podfit.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/compute_damage_atom.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/compute_dilatation_atom.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/compute_plasticity_atom.h"
-#undef PACKAGE
-#define PACKAGE "PTM"
-#include "PTM/compute_ptm_atom.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/compute_spec_atom.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/compute_event_displace.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/compute_pressure_grem.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/compute_erotate_rigid.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/compute_ke_rigid.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/compute_rigid_local.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/compute_sph_e_atom.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/compute_sph_rho_atom.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/compute_sph_t_atom.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/compute_spin.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_force_tally.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_heat_flux_tally.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_heat_flux_virial_tally.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_pe_mol_tally.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_pe_tally.h"
-#undef PACKAGE
-#define PACKAGE "TALLY"
-#include "TALLY/compute_stress_tally.h"
-#undef PACKAGE
-#define PACKAGE "UEF"
-#include "UEF/compute_pressure_uef.h"
-#undef PACKAGE
-#define PACKAGE "UEF"
-#include "UEF/compute_temp_uef.h"
-#undef PACKAGE
-#define PACKAGE "VORONOI"
-#include "VORONOI/compute_voronoi_atom.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/compute_temp_cs.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/compute_ave_sphere_atom_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/compute_coord_atom_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/compute_orientorder_atom_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/compute_temp_deform_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/compute_temp_kokkos.h"
diff --git a/doc/styles/packages_dihedral.h b/doc/styles/packages_dihedral.h
deleted file mode 100644
index 774fb4ad6f..0000000000
--- a/doc/styles/packages_dihedral.h
+++ /dev/null
@@ -1,99 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/dihedral_class2.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_cosine_shift_exp.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_fourier.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_helix.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_nharmonic.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_quadratic.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_spherical.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_table_cut.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_charmm.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_charmmfsw.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_multi_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_opls.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_table.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/dihedral_charmm_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/dihedral_class2_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/dihedral_harmonic_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/dihedral_opls_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/dihedral_charmm_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/dihedral_fourier_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/dihedral_harmonic_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/dihedral_opls_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_charmm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_class2_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_cosine_shift_exp_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_fourier_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_harmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_helix_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_multi_harmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_nharmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_opls_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_quadratic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_table_omp.h"
diff --git a/doc/styles/packages_dihedral.h.tmp b/doc/styles/packages_dihedral.h.tmp
deleted file mode 100644
index 774fb4ad6f..0000000000
--- a/doc/styles/packages_dihedral.h.tmp
+++ /dev/null
@@ -1,99 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/dihedral_class2.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_cosine_shift_exp.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_fourier.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_helix.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_nharmonic.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_quadratic.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_spherical.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/dihedral_table_cut.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_charmm.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_charmmfsw.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_multi_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_opls.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/dihedral_table.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/dihedral_charmm_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/dihedral_class2_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/dihedral_harmonic_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/dihedral_opls_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/dihedral_charmm_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/dihedral_fourier_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/dihedral_harmonic_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/dihedral_opls_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_charmm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_class2_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_cosine_shift_exp_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_fourier_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_harmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_helix_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_multi_harmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_nharmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_opls_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_quadratic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/dihedral_table_omp.h"
diff --git a/doc/styles/packages_dump.h b/doc/styles/packages_dump.h
deleted file mode 100644
index 9f4e262b46..0000000000
--- a/doc/styles/packages_dump.h
+++ /dev/null
@@ -1,75 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "ADIOS"
-#include "ADIOS/dump_atom_adios.h"
-#undef PACKAGE
-#define PACKAGE "ADIOS"
-#include "ADIOS/dump_custom_adios.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_atom_gz.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_atom_zstd.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_cfg_gz.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_cfg_zstd.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_custom_gz.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_custom_zstd.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_local_gz.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_local_zstd.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_xyz_gz.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_xyz_zstd.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-DUMP"
-#include "EXTRA-DUMP/dump_dcd.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-DUMP"
-#include "EXTRA-DUMP/dump_xtc.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-DUMP"
-#include "EXTRA-DUMP/dump_yaml.h"
-#undef PACKAGE
-#define PACKAGE "H5MD"
-#include "H5MD/dump_h5md.h"
-#undef PACKAGE
-#define PACKAGE "MOLFILE"
-#include "MOLFILE/dump_molfile.h"
-#undef PACKAGE
-#define PACKAGE "MPIIO"
-#include "MPIIO/dump_atom_mpiio.h"
-#undef PACKAGE
-#define PACKAGE "MPIIO"
-#include "MPIIO/dump_cfg_mpiio.h"
-#undef PACKAGE
-#define PACKAGE "MPIIO"
-#include "MPIIO/dump_custom_mpiio.h"
-#undef PACKAGE
-#define PACKAGE "MPIIO"
-#include "MPIIO/dump_xyz_mpiio.h"
-#undef PACKAGE
-#define PACKAGE "NETCDF"
-#include "NETCDF/dump_netcdf.h"
-#undef PACKAGE
-#define PACKAGE "NETCDF"
-#include "NETCDF/dump_netcdf_mpiio.h"
-#undef PACKAGE
-#define PACKAGE "UEF"
-#include "UEF/dump_cfg_uef.h"
-#undef PACKAGE
-#define PACKAGE "VTK"
-#include "VTK/dump_vtk.h"
diff --git a/doc/styles/packages_dump.h.tmp b/doc/styles/packages_dump.h.tmp
deleted file mode 100644
index 9f4e262b46..0000000000
--- a/doc/styles/packages_dump.h.tmp
+++ /dev/null
@@ -1,75 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "ADIOS"
-#include "ADIOS/dump_atom_adios.h"
-#undef PACKAGE
-#define PACKAGE "ADIOS"
-#include "ADIOS/dump_custom_adios.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_atom_gz.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_atom_zstd.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_cfg_gz.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_cfg_zstd.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_custom_gz.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_custom_zstd.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_local_gz.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_local_zstd.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_xyz_gz.h"
-#undef PACKAGE
-#define PACKAGE "COMPRESS"
-#include "COMPRESS/dump_xyz_zstd.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-DUMP"
-#include "EXTRA-DUMP/dump_dcd.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-DUMP"
-#include "EXTRA-DUMP/dump_xtc.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-DUMP"
-#include "EXTRA-DUMP/dump_yaml.h"
-#undef PACKAGE
-#define PACKAGE "H5MD"
-#include "H5MD/dump_h5md.h"
-#undef PACKAGE
-#define PACKAGE "MOLFILE"
-#include "MOLFILE/dump_molfile.h"
-#undef PACKAGE
-#define PACKAGE "MPIIO"
-#include "MPIIO/dump_atom_mpiio.h"
-#undef PACKAGE
-#define PACKAGE "MPIIO"
-#include "MPIIO/dump_cfg_mpiio.h"
-#undef PACKAGE
-#define PACKAGE "MPIIO"
-#include "MPIIO/dump_custom_mpiio.h"
-#undef PACKAGE
-#define PACKAGE "MPIIO"
-#include "MPIIO/dump_xyz_mpiio.h"
-#undef PACKAGE
-#define PACKAGE "NETCDF"
-#include "NETCDF/dump_netcdf.h"
-#undef PACKAGE
-#define PACKAGE "NETCDF"
-#include "NETCDF/dump_netcdf_mpiio.h"
-#undef PACKAGE
-#define PACKAGE "UEF"
-#include "UEF/dump_cfg_uef.h"
-#undef PACKAGE
-#define PACKAGE "VTK"
-#include "VTK/dump_vtk.h"
diff --git a/doc/styles/packages_fix.h b/doc/styles/packages_fix.h
deleted file mode 100644
index 4023c72ea6..0000000000
--- a/doc/styles/packages_fix.h
+++ /dev/null
@@ -1,762 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nph_asphere.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_npt_asphere.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nve_asphere.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nve_asphere_noforce.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nve_line.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nve_tri.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nvt_asphere.h"
-#undef PACKAGE
-#define PACKAGE "ATC"
-#include "ATC/fix_atc.h"
-#undef PACKAGE
-#define PACKAGE "AWPMD"
-#include "AWPMD/fix_nve_awpmd.h"
-#undef PACKAGE
-#define PACKAGE "BOCS"
-#include "BOCS/fix_bocs.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_nph_body.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_npt_body.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_nve_body.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_nvt_body.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_wall_body_polygon.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_wall_body_polyhedron.h"
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/fix_nve_bpm_sphere.h"
-#undef PACKAGE
-#define PACKAGE "BROWNIAN"
-#include "BROWNIAN/fix_brownian.h"
-#undef PACKAGE
-#define PACKAGE "BROWNIAN"
-#include "BROWNIAN/fix_brownian_asphere.h"
-#undef PACKAGE
-#define PACKAGE "BROWNIAN"
-#include "BROWNIAN/fix_brownian_sphere.h"
-#undef PACKAGE
-#define PACKAGE "BROWNIAN"
-#include "BROWNIAN/fix_propel_self.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/fix_nve_dot.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/fix_nve_dotc_langevin.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/fix_wall_colloid.h"
-#undef PACKAGE
-#define PACKAGE "COLVARS"
-#include "COLVARS/fix_colvars.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/fix_polarize_bem_gmres.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/fix_polarize_bem_icc.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/fix_polarize_functional.h"
-#undef PACKAGE
-#define PACKAGE "DIFFRACTION"
-#include "DIFFRACTION/fix_saed_vtk.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/fix_edpd_source.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/fix_mvv_dpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/fix_mvv_edpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/fix_mvv_tdpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/fix_tdpd_source.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_dpd_energy.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_eos_cv.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_eos_table.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_eos_table_rx.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_rx.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_shardlow.h"
-#undef PACKAGE
-#define PACKAGE "DPD-SMOOTH"
-#include "DPD-SMOOTH/fix_meso_move.h"
-#undef PACKAGE
-#define PACKAGE "DPD-SMOOTH"
-#include "DPD-SMOOTH/fix_rigid_meso.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/fix_drude.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/fix_drude_transform.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/fix_langevin_drude.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/fix_tgnpt_drude.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/fix_tgnvt_drude.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_langevin_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_nph_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_npt_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_nve_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_nvt_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_nvt_sllod_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_temp_rescale_eff.h"
-#undef PACKAGE
-#define PACKAGE "ELECTRODE"
-#include "ELECTRODE/fix_electrode_conp.h"
-#undef PACKAGE
-#define PACKAGE "ELECTRODE"
-#include "ELECTRODE/fix_electrode_conq.h"
-#undef PACKAGE
-#define PACKAGE "ELECTRODE"
-#include "ELECTRODE/fix_electrode_thermo.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_addtorque.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ave_correlate_long.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_controller.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_drag.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_electron_stopping.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_electron_stopping_fit.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ffl.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_filter_corotate.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_flow_gauss.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_gld.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_gle.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_momentum_chunk.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_npt_cauchy.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_numdiff.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_numdiff_virial.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_nvk.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_oneway.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_pafi.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_rhok.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_smd.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_spring_rg.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_temp_csld.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_temp_csvr.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ti_spring.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_tmd.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ttm.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ttm_grid.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ttm_mod.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_viscosity.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_viscous_sphere.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_wall_ees.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_wall_reflect_stochastic.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_wall_region_ees.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/fix_adapt_fep.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/fix_damping_cundall.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/fix_freeze.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/fix_pour.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/fix_wall_gran.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/fix_wall_gran_region.h"
-#undef PACKAGE
-#define PACKAGE "KIM"
-#include "KIM/fix_store_kim.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/fix_tune_kspace.h"
-#undef PACKAGE
-#define PACKAGE "LATBOLTZ"
-#include "LATBOLTZ/fix_lb_fluid.h"
-#undef PACKAGE
-#define PACKAGE "LATBOLTZ"
-#include "LATBOLTZ/fix_lb_momentum.h"
-#undef PACKAGE
-#define PACKAGE "LATBOLTZ"
-#include "LATBOLTZ/fix_lb_viscous.h"
-#undef PACKAGE
-#define PACKAGE "LATTE"
-#include "LATTE/fix_latte.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_adjust_dt.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_integrate_tlsph.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_integrate_ulsph.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_move_triangulated_surface.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_setvel.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_tlsph_reference_configuration.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_wall_surface.h"
-#undef PACKAGE
-#define PACKAGE "MANIFOLD"
-#include "MANIFOLD/fix_manifoldforce.h"
-#undef PACKAGE
-#define PACKAGE "MANIFOLD"
-#include "MANIFOLD/fix_nve_manifold_rattle.h"
-#undef PACKAGE
-#define PACKAGE "MANIFOLD"
-#include "MANIFOLD/fix_nvt_manifold_rattle.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/fix_qeq_comb.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_atom_swap.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_bond_break.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_bond_create.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_bond_create_angle.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_bond_swap.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_charge_regulation.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_gcmc.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_mol_swap.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_tfmc.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_widom.h"
-#undef PACKAGE
-#define PACKAGE "MDI"
-#include "MDI/fix_mdi_aimd.h"
-#undef PACKAGE
-#define PACKAGE "MDI"
-#include "MDI/fix_mdi_engine.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/fix_accelerate_cos.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/fix_imd.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/fix_ipi.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/fix_srp.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/fix_cmap.h"
-#undef PACKAGE
-#define PACKAGE "MSCG"
-#include "MSCG/fix_mscg.h"
-#undef PACKAGE
-#define PACKAGE "ORIENT"
-#include "ORIENT/fix_orient_bcc.h"
-#undef PACKAGE
-#define PACKAGE "ORIENT"
-#include "ORIENT/fix_orient_eco.h"
-#undef PACKAGE
-#define PACKAGE "ORIENT"
-#include "ORIENT/fix_orient_fcc.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/fix_peri_neigh.h"
-#undef PACKAGE
-#define PACKAGE "PHONON"
-#include "PHONON/fix_phonon.h"
-#undef PACKAGE
-#define PACKAGE "PLUMED"
-#include "PLUMED/fix_plumed.h"
-#undef PACKAGE
-#define PACKAGE "POEMS"
-#include "POEMS/fix_poems.h"
-#undef PACKAGE
-#define PACKAGE "PYTHON"
-#include "PYTHON/fix_python_invoke.h"
-#undef PACKAGE
-#define PACKAGE "PYTHON"
-#include "PYTHON/fix_python_move.h"
-#undef PACKAGE
-#define PACKAGE "QEQ"
-#include "QEQ/fix_qeq_dynamic.h"
-#undef PACKAGE
-#define PACKAGE "QEQ"
-#include "QEQ/fix_qeq_fire.h"
-#undef PACKAGE
-#define PACKAGE "QEQ"
-#include "QEQ/fix_qeq_point.h"
-#undef PACKAGE
-#define PACKAGE "QEQ"
-#include "QEQ/fix_qeq_shielded.h"
-#undef PACKAGE
-#define PACKAGE "QEQ"
-#include "QEQ/fix_qeq_slater.h"
-#undef PACKAGE
-#define PACKAGE "QMMM"
-#include "QMMM/fix_qmmm.h"
-#undef PACKAGE
-#define PACKAGE "QTB"
-#include "QTB/fix_qbmsst.h"
-#undef PACKAGE
-#define PACKAGE "QTB"
-#include "QTB/fix_qtb.h"
-#undef PACKAGE
-#define PACKAGE "REACTION"
-#include "REACTION/fix_bond_react.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/fix_acks2_reaxff.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/fix_qeq_reaxff.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/fix_reaxff.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/fix_reaxff_bonds.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/fix_reaxff_species.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_event_hyper.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_event_prd.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_event_tad.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_grem.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_hyper_global.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_hyper_local.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_neb.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_pimd.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_ehex.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rattle.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nph.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nph_small.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_npt.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_npt_small.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nve.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nve_small.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nvt.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nvt_small.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_small.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_shake.h"
-#undef PACKAGE
-#define PACKAGE "SHOCK"
-#include "SHOCK/fix_append_atoms.h"
-#undef PACKAGE
-#define PACKAGE "SHOCK"
-#include "SHOCK/fix_msst.h"
-#undef PACKAGE
-#define PACKAGE "SHOCK"
-#include "SHOCK/fix_nphug.h"
-#undef PACKAGE
-#define PACKAGE "SHOCK"
-#include "SHOCK/fix_wall_piston.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/fix_sph.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/fix_sph_stationary.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/fix_langevin_spin.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/fix_neb_spin.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/fix_nve_spin.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/fix_precession_spin.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/fix_setforce_spin.h"
-#undef PACKAGE
-#define PACKAGE "SRD"
-#include "SRD/fix_srd.h"
-#undef PACKAGE
-#define PACKAGE "SRD"
-#include "SRD/fix_wall_srd.h"
-#undef PACKAGE
-#define PACKAGE "UEF"
-#include "UEF/fix_npt_uef.h"
-#undef PACKAGE
-#define PACKAGE "UEF"
-#include "UEF/fix_nvt_uef.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/fix_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/fix_npt_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/fix_nve_asphere_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/fix_nve_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/fix_nvt_gpu.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_acks2_reaxff_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_deform_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_dpd_energy_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_enforce2d_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_eos_table_rx_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_freeze_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_gravity_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_langevin_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_minimize_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_momentum_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_neigh_history_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_nph_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_npt_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_nve_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_nve_sphere_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_nvt_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_nvt_sllod_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_property_atom_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_qeq_reaxff_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_reaxff_bonds_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_reaxff_species_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_rx_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_setforce_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_shake_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_shardlow_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_wall_lj93_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_wall_reflect_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_electrode_conp_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_electrode_conq_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_electrode_thermo_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_npt_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_nve_asphere_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_nve_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_nvt_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_nvt_sllod_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_gravity_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_neigh_history_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nph_asphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nph_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nph_sphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_npt_asphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_npt_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_npt_sphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nve_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nve_sphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nvt_asphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nvt_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nvt_sllod_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nvt_sphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_qeq_comb_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_qeq_reaxff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_nph_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_npt_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_nve_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_nvt_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_small_omp.h"
diff --git a/doc/styles/packages_fix.h.tmp b/doc/styles/packages_fix.h.tmp
deleted file mode 100644
index 4023c72ea6..0000000000
--- a/doc/styles/packages_fix.h.tmp
+++ /dev/null
@@ -1,762 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nph_asphere.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_npt_asphere.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nve_asphere.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nve_asphere_noforce.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nve_line.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nve_tri.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/fix_nvt_asphere.h"
-#undef PACKAGE
-#define PACKAGE "ATC"
-#include "ATC/fix_atc.h"
-#undef PACKAGE
-#define PACKAGE "AWPMD"
-#include "AWPMD/fix_nve_awpmd.h"
-#undef PACKAGE
-#define PACKAGE "BOCS"
-#include "BOCS/fix_bocs.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_nph_body.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_npt_body.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_nve_body.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_nvt_body.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_wall_body_polygon.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/fix_wall_body_polyhedron.h"
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/fix_nve_bpm_sphere.h"
-#undef PACKAGE
-#define PACKAGE "BROWNIAN"
-#include "BROWNIAN/fix_brownian.h"
-#undef PACKAGE
-#define PACKAGE "BROWNIAN"
-#include "BROWNIAN/fix_brownian_asphere.h"
-#undef PACKAGE
-#define PACKAGE "BROWNIAN"
-#include "BROWNIAN/fix_brownian_sphere.h"
-#undef PACKAGE
-#define PACKAGE "BROWNIAN"
-#include "BROWNIAN/fix_propel_self.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/fix_nve_dot.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/fix_nve_dotc_langevin.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/fix_wall_colloid.h"
-#undef PACKAGE
-#define PACKAGE "COLVARS"
-#include "COLVARS/fix_colvars.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/fix_polarize_bem_gmres.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/fix_polarize_bem_icc.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/fix_polarize_functional.h"
-#undef PACKAGE
-#define PACKAGE "DIFFRACTION"
-#include "DIFFRACTION/fix_saed_vtk.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/fix_edpd_source.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/fix_mvv_dpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/fix_mvv_edpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/fix_mvv_tdpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/fix_tdpd_source.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_dpd_energy.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_eos_cv.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_eos_table.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_eos_table_rx.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_rx.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/fix_shardlow.h"
-#undef PACKAGE
-#define PACKAGE "DPD-SMOOTH"
-#include "DPD-SMOOTH/fix_meso_move.h"
-#undef PACKAGE
-#define PACKAGE "DPD-SMOOTH"
-#include "DPD-SMOOTH/fix_rigid_meso.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/fix_drude.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/fix_drude_transform.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/fix_langevin_drude.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/fix_tgnpt_drude.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/fix_tgnvt_drude.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_langevin_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_nph_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_npt_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_nve_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_nvt_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_nvt_sllod_eff.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/fix_temp_rescale_eff.h"
-#undef PACKAGE
-#define PACKAGE "ELECTRODE"
-#include "ELECTRODE/fix_electrode_conp.h"
-#undef PACKAGE
-#define PACKAGE "ELECTRODE"
-#include "ELECTRODE/fix_electrode_conq.h"
-#undef PACKAGE
-#define PACKAGE "ELECTRODE"
-#include "ELECTRODE/fix_electrode_thermo.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_addtorque.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ave_correlate_long.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_controller.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_drag.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_electron_stopping.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_electron_stopping_fit.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ffl.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_filter_corotate.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_flow_gauss.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_gld.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_gle.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_momentum_chunk.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_npt_cauchy.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_numdiff.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_numdiff_virial.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_nvk.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_oneway.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_pafi.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_rhok.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_smd.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_spring_rg.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_temp_csld.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_temp_csvr.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ti_spring.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_tmd.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ttm.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ttm_grid.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_ttm_mod.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_viscosity.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_viscous_sphere.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_wall_ees.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_wall_reflect_stochastic.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-FIX"
-#include "EXTRA-FIX/fix_wall_region_ees.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/fix_adapt_fep.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/fix_damping_cundall.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/fix_freeze.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/fix_pour.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/fix_wall_gran.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/fix_wall_gran_region.h"
-#undef PACKAGE
-#define PACKAGE "KIM"
-#include "KIM/fix_store_kim.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/fix_tune_kspace.h"
-#undef PACKAGE
-#define PACKAGE "LATBOLTZ"
-#include "LATBOLTZ/fix_lb_fluid.h"
-#undef PACKAGE
-#define PACKAGE "LATBOLTZ"
-#include "LATBOLTZ/fix_lb_momentum.h"
-#undef PACKAGE
-#define PACKAGE "LATBOLTZ"
-#include "LATBOLTZ/fix_lb_viscous.h"
-#undef PACKAGE
-#define PACKAGE "LATTE"
-#include "LATTE/fix_latte.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_adjust_dt.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_integrate_tlsph.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_integrate_ulsph.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_move_triangulated_surface.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_setvel.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_tlsph_reference_configuration.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/fix_smd_wall_surface.h"
-#undef PACKAGE
-#define PACKAGE "MANIFOLD"
-#include "MANIFOLD/fix_manifoldforce.h"
-#undef PACKAGE
-#define PACKAGE "MANIFOLD"
-#include "MANIFOLD/fix_nve_manifold_rattle.h"
-#undef PACKAGE
-#define PACKAGE "MANIFOLD"
-#include "MANIFOLD/fix_nvt_manifold_rattle.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/fix_qeq_comb.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_atom_swap.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_bond_break.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_bond_create.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_bond_create_angle.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_bond_swap.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_charge_regulation.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_gcmc.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_mol_swap.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_tfmc.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/fix_widom.h"
-#undef PACKAGE
-#define PACKAGE "MDI"
-#include "MDI/fix_mdi_aimd.h"
-#undef PACKAGE
-#define PACKAGE "MDI"
-#include "MDI/fix_mdi_engine.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/fix_accelerate_cos.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/fix_imd.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/fix_ipi.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/fix_srp.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/fix_cmap.h"
-#undef PACKAGE
-#define PACKAGE "MSCG"
-#include "MSCG/fix_mscg.h"
-#undef PACKAGE
-#define PACKAGE "ORIENT"
-#include "ORIENT/fix_orient_bcc.h"
-#undef PACKAGE
-#define PACKAGE "ORIENT"
-#include "ORIENT/fix_orient_eco.h"
-#undef PACKAGE
-#define PACKAGE "ORIENT"
-#include "ORIENT/fix_orient_fcc.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/fix_peri_neigh.h"
-#undef PACKAGE
-#define PACKAGE "PHONON"
-#include "PHONON/fix_phonon.h"
-#undef PACKAGE
-#define PACKAGE "PLUMED"
-#include "PLUMED/fix_plumed.h"
-#undef PACKAGE
-#define PACKAGE "POEMS"
-#include "POEMS/fix_poems.h"
-#undef PACKAGE
-#define PACKAGE "PYTHON"
-#include "PYTHON/fix_python_invoke.h"
-#undef PACKAGE
-#define PACKAGE "PYTHON"
-#include "PYTHON/fix_python_move.h"
-#undef PACKAGE
-#define PACKAGE "QEQ"
-#include "QEQ/fix_qeq_dynamic.h"
-#undef PACKAGE
-#define PACKAGE "QEQ"
-#include "QEQ/fix_qeq_fire.h"
-#undef PACKAGE
-#define PACKAGE "QEQ"
-#include "QEQ/fix_qeq_point.h"
-#undef PACKAGE
-#define PACKAGE "QEQ"
-#include "QEQ/fix_qeq_shielded.h"
-#undef PACKAGE
-#define PACKAGE "QEQ"
-#include "QEQ/fix_qeq_slater.h"
-#undef PACKAGE
-#define PACKAGE "QMMM"
-#include "QMMM/fix_qmmm.h"
-#undef PACKAGE
-#define PACKAGE "QTB"
-#include "QTB/fix_qbmsst.h"
-#undef PACKAGE
-#define PACKAGE "QTB"
-#include "QTB/fix_qtb.h"
-#undef PACKAGE
-#define PACKAGE "REACTION"
-#include "REACTION/fix_bond_react.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/fix_acks2_reaxff.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/fix_qeq_reaxff.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/fix_reaxff.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/fix_reaxff_bonds.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/fix_reaxff_species.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_event_hyper.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_event_prd.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_event_tad.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_grem.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_hyper_global.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_hyper_local.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_neb.h"
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/fix_pimd.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_ehex.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rattle.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nph.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nph_small.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_npt.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_npt_small.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nve.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nve_small.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nvt.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_nvt_small.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_rigid_small.h"
-#undef PACKAGE
-#define PACKAGE "RIGID"
-#include "RIGID/fix_shake.h"
-#undef PACKAGE
-#define PACKAGE "SHOCK"
-#include "SHOCK/fix_append_atoms.h"
-#undef PACKAGE
-#define PACKAGE "SHOCK"
-#include "SHOCK/fix_msst.h"
-#undef PACKAGE
-#define PACKAGE "SHOCK"
-#include "SHOCK/fix_nphug.h"
-#undef PACKAGE
-#define PACKAGE "SHOCK"
-#include "SHOCK/fix_wall_piston.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/fix_sph.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/fix_sph_stationary.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/fix_langevin_spin.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/fix_neb_spin.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/fix_nve_spin.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/fix_precession_spin.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/fix_setforce_spin.h"
-#undef PACKAGE
-#define PACKAGE "SRD"
-#include "SRD/fix_srd.h"
-#undef PACKAGE
-#define PACKAGE "SRD"
-#include "SRD/fix_wall_srd.h"
-#undef PACKAGE
-#define PACKAGE "UEF"
-#include "UEF/fix_npt_uef.h"
-#undef PACKAGE
-#define PACKAGE "UEF"
-#include "UEF/fix_nvt_uef.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/fix_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/fix_npt_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/fix_nve_asphere_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/fix_nve_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/fix_nvt_gpu.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_acks2_reaxff_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_deform_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_dpd_energy_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_enforce2d_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_eos_table_rx_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_freeze_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_gravity_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_langevin_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_minimize_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_momentum_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_neigh_history_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_nph_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_npt_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_nve_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_nve_sphere_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_nvt_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_nvt_sllod_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_property_atom_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_qeq_reaxff_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_reaxff_bonds_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_reaxff_species_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_rx_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_setforce_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_shake_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_shardlow_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_wall_lj93_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/fix_wall_reflect_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_electrode_conp_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_electrode_conq_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_electrode_thermo_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_npt_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_nve_asphere_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_nve_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_nvt_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/fix_nvt_sllod_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_gravity_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_neigh_history_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nph_asphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nph_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nph_sphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_npt_asphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_npt_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_npt_sphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nve_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nve_sphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nvt_asphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nvt_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nvt_sllod_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_nvt_sphere_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_qeq_comb_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_qeq_reaxff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_nph_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_npt_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_nve_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_nvt_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/fix_rigid_small_omp.h"
diff --git a/doc/styles/packages_improper.h b/doc/styles/packages_improper.h
deleted file mode 100644
index 102903b8e1..0000000000
--- a/doc/styles/packages_improper.h
+++ /dev/null
@@ -1,66 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/improper_class2.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/improper_cossq.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/improper_distance.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/improper_fourier.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/improper_ring.h"
-#undef PACKAGE
-#define PACKAGE "MOFFF"
-#include "MOFFF/improper_inversion_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/improper_cvff.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/improper_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/improper_umbrella.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/improper_distharm.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/improper_sqdistharm.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/improper_class2_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/improper_harmonic_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/improper_cvff_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/improper_harmonic_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_class2_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_cossq_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_cvff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_fourier_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_harmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_ring_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_umbrella_omp.h"
diff --git a/doc/styles/packages_improper.h.tmp b/doc/styles/packages_improper.h.tmp
deleted file mode 100644
index 102903b8e1..0000000000
--- a/doc/styles/packages_improper.h.tmp
+++ /dev/null
@@ -1,66 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/improper_class2.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/improper_cossq.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/improper_distance.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/improper_fourier.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-MOLECULE"
-#include "EXTRA-MOLECULE/improper_ring.h"
-#undef PACKAGE
-#define PACKAGE "MOFFF"
-#include "MOFFF/improper_inversion_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/improper_cvff.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/improper_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/improper_umbrella.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/improper_distharm.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/improper_sqdistharm.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/improper_class2_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/improper_harmonic_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/improper_cvff_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/improper_harmonic_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_class2_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_cossq_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_cvff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_fourier_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_harmonic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_ring_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/improper_umbrella_omp.h"
diff --git a/doc/styles/packages_integrate.h b/doc/styles/packages_integrate.h
deleted file mode 100644
index 78521d5e52..0000000000
--- a/doc/styles/packages_integrate.h
+++ /dev/null
@@ -1,12 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/verlet_split.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/verlet_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/verlet_lrt_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/respa_omp.h"
diff --git a/doc/styles/packages_integrate.h.tmp b/doc/styles/packages_integrate.h.tmp
deleted file mode 100644
index 78521d5e52..0000000000
--- a/doc/styles/packages_integrate.h.tmp
+++ /dev/null
@@ -1,12 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "REPLICA"
-#include "REPLICA/verlet_split.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/verlet_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/verlet_lrt_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/respa_omp.h"
diff --git a/doc/styles/packages_kspace.h b/doc/styles/packages_kspace.h
deleted file mode 100644
index 471f0c84b9..0000000000
--- a/doc/styles/packages_kspace.h
+++ /dev/null
@@ -1,99 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/msm_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pppm_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pppm_disp_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "ELECTRODE"
-#include "ELECTRODE/ewald_electrode.h"
-#undef PACKAGE
-#define PACKAGE "ELECTRODE"
-#include "ELECTRODE/pppm_electrode.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/ewald.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/ewald_dipole.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/ewald_dipole_spin.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/ewald_disp.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/msm_cg.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_cg.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_dipole.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_dipole_spin.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_disp.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_disp_tip4p.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_stagger.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_tip4p.h"
-#undef PACKAGE
-#define PACKAGE "SCAFACOS"
-#include "SCAFACOS/scafacos.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pppm_gpu.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pppm_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pppm_disp_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pppm_electrode_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pppm_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/ewald_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/msm_cg_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pppm_cg_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pppm_disp_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pppm_disp_tip4p_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pppm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pppm_tip4p_omp.h"
diff --git a/doc/styles/packages_kspace.h.tmp b/doc/styles/packages_kspace.h.tmp
deleted file mode 100644
index 471f0c84b9..0000000000
--- a/doc/styles/packages_kspace.h.tmp
+++ /dev/null
@@ -1,99 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/msm_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pppm_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pppm_disp_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "ELECTRODE"
-#include "ELECTRODE/ewald_electrode.h"
-#undef PACKAGE
-#define PACKAGE "ELECTRODE"
-#include "ELECTRODE/pppm_electrode.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/ewald.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/ewald_dipole.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/ewald_dipole_spin.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/ewald_disp.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/msm_cg.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_cg.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_dipole.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_dipole_spin.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_disp.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_disp_tip4p.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_stagger.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pppm_tip4p.h"
-#undef PACKAGE
-#define PACKAGE "SCAFACOS"
-#include "SCAFACOS/scafacos.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pppm_gpu.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pppm_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pppm_disp_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pppm_electrode_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pppm_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/ewald_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/msm_cg_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pppm_cg_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pppm_disp_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pppm_disp_tip4p_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pppm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pppm_tip4p_omp.h"
diff --git a/doc/styles/packages_minimize.h b/doc/styles/packages_minimize.h
deleted file mode 100644
index 5a4e77f867..0000000000
--- a/doc/styles/packages_minimize.h
+++ /dev/null
@@ -1,12 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/min_spin.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/min_spin_cg.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/min_spin_lbfgs.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/min_cg_kokkos.h"
diff --git a/doc/styles/packages_minimize.h.tmp b/doc/styles/packages_minimize.h.tmp
deleted file mode 100644
index 5a4e77f867..0000000000
--- a/doc/styles/packages_minimize.h.tmp
+++ /dev/null
@@ -1,12 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/min_spin.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/min_spin_cg.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/min_spin_lbfgs.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/min_cg_kokkos.h"
diff --git a/doc/styles/packages_nbin.h b/doc/styles/packages_nbin.h
deleted file mode 100644
index b56c211344..0000000000
--- a/doc/styles/packages_nbin.h
+++ /dev/null
@@ -1,12 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/nbin_ssa.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/nbin_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/nbin_ssa_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/nbin_intel.h"
diff --git a/doc/styles/packages_nbin.h.tmp b/doc/styles/packages_nbin.h.tmp
deleted file mode 100644
index b56c211344..0000000000
--- a/doc/styles/packages_nbin.h.tmp
+++ /dev/null
@@ -1,12 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/nbin_ssa.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/nbin_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/nbin_ssa_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/nbin_intel.h"
diff --git a/doc/styles/packages_npair.h b/doc/styles/packages_npair.h
deleted file mode 100644
index 8040be6460..0000000000
--- a/doc/styles/packages_npair.h
+++ /dev/null
@@ -1,159 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/npair_half_bin_newton_ssa.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/npair_copy_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/npair_halffull_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/npair_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/npair_skip_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/npair_ssa_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_full_bin_ghost_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_full_bin_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_half_bin_newton_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_half_bin_newton_tri_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_halffull_newtoff_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_halffull_newton_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_skip_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_bin_atomonly_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_bin_ghost_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_bin_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_multi_old_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_multi_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_nsq_ghost_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_nsq_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_bin_atomonly_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_bin_newtoff_ghost_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_bin_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_bin_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_bin_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_old_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_old_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_old_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_nsq_newtoff_ghost_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_nsq_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_nsq_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_respa_bin_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_respa_bin_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_respa_bin_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_respa_nsq_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_respa_nsq_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_bin_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_bin_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_bin_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_old_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_old_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_old_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_nsq_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_nsq_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_halffull_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_halffull_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_skip_omp.h"
diff --git a/doc/styles/packages_npair.h.tmp b/doc/styles/packages_npair.h.tmp
deleted file mode 100644
index 8040be6460..0000000000
--- a/doc/styles/packages_npair.h.tmp
+++ /dev/null
@@ -1,159 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/npair_half_bin_newton_ssa.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/npair_copy_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/npair_halffull_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/npair_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/npair_skip_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/npair_ssa_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_full_bin_ghost_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_full_bin_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_half_bin_newton_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_half_bin_newton_tri_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_halffull_newtoff_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_halffull_newton_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/npair_skip_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_bin_atomonly_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_bin_ghost_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_bin_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_multi_old_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_multi_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_nsq_ghost_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_full_nsq_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_bin_atomonly_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_bin_newtoff_ghost_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_bin_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_bin_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_bin_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_old_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_old_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_multi_old_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_nsq_newtoff_ghost_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_nsq_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_nsq_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_respa_bin_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_respa_bin_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_respa_bin_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_respa_nsq_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_respa_nsq_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_bin_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_bin_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_bin_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_old_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_old_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_multi_old_newton_tri_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_nsq_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_half_size_nsq_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_halffull_newtoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_halffull_newton_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/npair_skip_omp.h"
diff --git a/doc/styles/packages_nstencil.h b/doc/styles/packages_nstencil.h
deleted file mode 100644
index 32eba840ca..0000000000
--- a/doc/styles/packages_nstencil.h
+++ /dev/null
@@ -1,6 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/nstencil_half_bin_2d_ssa.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/nstencil_half_bin_3d_ssa.h"
diff --git a/doc/styles/packages_nstencil.h.tmp b/doc/styles/packages_nstencil.h.tmp
deleted file mode 100644
index 32eba840ca..0000000000
--- a/doc/styles/packages_nstencil.h.tmp
+++ /dev/null
@@ -1,6 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/nstencil_half_bin_2d_ssa.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/nstencil_half_bin_3d_ssa.h"
diff --git a/doc/styles/packages_ntopo.h b/doc/styles/packages_ntopo.h
deleted file mode 100644
index e69de29bb2..0000000000
diff --git a/doc/styles/packages_ntopo.h.tmp b/doc/styles/packages_ntopo.h.tmp
deleted file mode 100644
index e69de29bb2..0000000000
diff --git a/doc/styles/packages_pair.h b/doc/styles/packages_pair.h
deleted file mode 100644
index 2f92e7f415..0000000000
--- a/doc/styles/packages_pair.h
+++ /dev/null
@@ -1,1485 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/pair_gayberne.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/pair_line_lj.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/pair_resquared.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/pair_tri_lj.h"
-#undef PACKAGE
-#define PACKAGE "AWPMD"
-#include "AWPMD/pair_awpmd_cut.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/pair_body_nparticle.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/pair_body_rounded_polygon.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/pair_body_rounded_polyhedron.h"
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/pair_bpm_spring.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna2_coaxstk.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna2_dh.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna2_excv.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna_coaxstk.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna_excv.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna_hbond.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna_stk.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna_xstk.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxrna2_dh.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxrna2_excv.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxrna2_hbond.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxrna2_stk.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxrna2_xstk.h"
-#undef PACKAGE
-#define PACKAGE "CG-SDK"
-#include "CG-SDK/pair_lj_sdk.h"
-#undef PACKAGE
-#define PACKAGE "CG-SDK"
-#include "CG-SDK/pair_lj_sdk_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "CG-SDK"
-#include "CG-SDK/pair_lj_sdk_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/pair_lj_class2.h"
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/pair_lj_class2_coul_cut.h"
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/pair_lj_class2_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_brownian.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_brownian_poly.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_colloid.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_lubricate.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_lubricateU.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_lubricateU_poly.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_lubricate_poly.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_yukawa_colloid.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_coul_cut_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_coul_long_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_lj_cut_coul_cut_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_lj_cut_coul_debye_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_lj_cut_coul_long_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_lj_cut_coul_msm_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_lj_long_coul_long_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/pair_lj_cut_dipole_cut.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/pair_lj_cut_dipole_long.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/pair_lj_long_dipole_long.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/pair_lj_sf_dipole_sf.h"
-#undef PACKAGE
-#define PACKAGE "DPD-BASIC"
-#include "DPD-BASIC/pair_dpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-BASIC"
-#include "DPD-BASIC/pair_dpd_ext.h"
-#undef PACKAGE
-#define PACKAGE "DPD-BASIC"
-#include "DPD-BASIC/pair_dpd_ext_tstat.h"
-#undef PACKAGE
-#define PACKAGE "DPD-BASIC"
-#include "DPD-BASIC/pair_dpd_tstat.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/pair_edpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/pair_mdpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/pair_mdpd_rhosum.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/pair_tdpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_dpd_fdt.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_dpd_fdt_energy.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_exp6_rx.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_multi_lucy.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_multi_lucy_rx.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_table_rx.h"
-#undef PACKAGE
-#define PACKAGE "DPD-SMOOTH"
-#include "DPD-SMOOTH/pair_sdpd_taitwater_isothermal.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/pair_coul_tt.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/pair_lj_cut_thole_long.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/pair_thole.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/pair_eff_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_beck.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_born_coul_dsf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_born_coul_wolf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_buck_mdf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_cosine_squared.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_coul_cut_global.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_coul_diel.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_coul_exclude.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_coul_slater_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_coul_slater_long.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_e3b.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_gauss.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_gauss_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_harmonic_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lennard_mdf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj96_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_cubic.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_cut_coul_debye.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_cut_coul_dsf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_cut_coul_wolf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_expand_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_gromacs.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_gromacs_coul_gromacs.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_mdf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_relres.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_smooth.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_smooth_linear.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_mie_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_momb.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_morse_smooth_linear.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_nm_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_nm_cut_coul_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_nm_cut_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_nm_cut_split.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_ufm.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_wf_cut.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_coul_cut_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_coul_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_charmm_coul_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_class2_coul_cut_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_class2_coul_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_class2_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_cut_coul_cut_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_cut_coul_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_cut_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_cut_tip4p_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_morse_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_tip4p_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/pair_gran_hertz_history.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/pair_gran_hooke.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/pair_gran_hooke_history.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/pair_granular.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_coul_shield.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_drip.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_ilp_graphene_hbn.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_ilp_tmd.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_kolmogorov_crespi_full.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_kolmogorov_crespi_z.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_lebedeva_z.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_saip_metal.h"
-#undef PACKAGE
-#define PACKAGE "KIM"
-#include "KIM/pair_kim.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_born_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_born_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_buck_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_buck_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_buck_long_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_coul_streitz.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_charmm_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_charmm_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_charmmfsw_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_cut_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_cut_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_cut_tip4p_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_long_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_long_tip4p_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_tip4p_long.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/pair_smd_hertz.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/pair_smd_tlsph.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/pair_smd_triangulated_surface.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/pair_smd_ulsph.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_adp.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_airebo.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_airebo_morse.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_atm.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_bop.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_comb.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_comb3.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eam.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eam_alloy.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eam_cd.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eam_fs.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eam_he.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_edip.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_edip_multi.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eim.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_extep.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_gw.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_gw_zbl.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_lcbop.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_local_density.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_meam_spline.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_meam_sw_spline.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_nb3b_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_polymorphic.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_rebo.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_sw.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_sw_angle_table.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_sw_mod.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_tersoff.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_tersoff_mod.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_tersoff_mod_c.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_tersoff_table.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_tersoff_zbl.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_threebody_table.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_vashishta.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_vashishta_table.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/pair_dsmc.h"
-#undef PACKAGE
-#define PACKAGE "MEAM"
-#include "MEAM/pair_meam.h"
-#undef PACKAGE
-#define PACKAGE "MESONT"
-#include "MESONT/pair_mesocnt.h"
-#undef PACKAGE
-#define PACKAGE "MESONT"
-#include "MESONT/pair_mesont_tpm.h"
-#undef PACKAGE
-#define PACKAGE "MGPT"
-#include "MGPT/pair_mgpt.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/pair_agni.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/pair_list.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/pair_srp.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/pair_tracker.h"
-#undef PACKAGE
-#define PACKAGE "ML-HDNNP"
-#include "ML-HDNNP/pair_hdnnp.h"
-#undef PACKAGE
-#define PACKAGE "ML-IAP"
-#include "ML-IAP/pair_mliap.h"
-#undef PACKAGE
-#define PACKAGE "ML-PACE"
-#include "ML-PACE/pair_pace.h"
-#undef PACKAGE
-#define PACKAGE "ML-QUIP"
-#include "ML-QUIP/pair_quip.h"
-#undef PACKAGE
-#define PACKAGE "ML-RANN"
-#include "ML-RANN/pair_rann.h"
-#undef PACKAGE
-#define PACKAGE "ML-SNAP"
-#include "ML-SNAP/pair_snap.h"
-#undef PACKAGE
-#define PACKAGE "MOFFF"
-#include "MOFFF/pair_buck6d_coul_gauss_dsf.h"
-#undef PACKAGE
-#define PACKAGE "MOFFF"
-#include "MOFFF/pair_buck6d_coul_gauss_long.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_hbond_dreiding_lj.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_hbond_dreiding_morse.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_lj_charmm_coul_charmm.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_lj_charmm_coul_charmm_implicit.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_lj_cut_tip4p_cut.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_tip4p_cut.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/pair_peri_eps.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/pair_peri_lps.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/pair_peri_pmb.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/pair_peri_ves.h"
-#undef PACKAGE
-#define PACKAGE "PYTHON"
-#include "PYTHON/pair_python.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/pair_reaxff.h"
-#undef PACKAGE
-#define PACKAGE "SMTBQ"
-#include "SMTBQ/pair_smatb.h"
-#undef PACKAGE
-#define PACKAGE "SMTBQ"
-#include "SMTBQ/pair_smatb_single.h"
-#undef PACKAGE
-#define PACKAGE "SMTBQ"
-#include "SMTBQ/pair_smtbq.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_heatconduction.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_idealgas.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_lj.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_rhosum.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_taitwater.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_taitwater_morris.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_dipole_cut.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_dipole_long.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_dmi.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_exchange.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_exchange_biquadratic.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_magelec.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_neel.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/pair_lj_switch3_coulgauss_long.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/pair_mm3_switch3_coulgauss_long.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_born_coul_dsf_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_born_coul_long_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_born_coul_wolf_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_buck_coul_long_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_coul_long_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_coul_wolf_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_lj_class2_coul_long_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_lj_cut_coul_long_cs.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_beck_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_born_coul_long_cs_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_born_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_born_coul_wolf_cs_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_born_coul_wolf_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_born_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_buck_coul_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_buck_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_buck_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_colloid_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_coul_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_coul_debye_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_coul_dsf_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_coul_long_cs_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_dpd_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_dpd_tstat_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_eam_alloy_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_eam_fs_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_eam_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_gauss_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_gayberne_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj96_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_charmm_coul_charmm_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_charmm_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_class2_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_class2_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cubic_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_coul_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_coul_debye_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_coul_dsf_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_coul_msm_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_dipole_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_dipole_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_tip4p_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_expand_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_expand_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_gromacs_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_sdk_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_sdk_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_sf_dipole_sf_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_smooth_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_mie_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_morse_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_resquared_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_soft_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_sw_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_table_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_tersoff_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_tersoff_mod_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_tersoff_zbl_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_ufm_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_vashishta_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_yukawa_colloid_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_yukawa_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_zbl_gpu.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_adp_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_buck_coul_cut_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_buck_coul_long_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_buck_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_coul_cut_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_coul_debye_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_coul_dsf_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_coul_long_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_coul_wolf_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_dpd_ext_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_dpd_ext_tstat_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_dpd_fdt_energy_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_dpd_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_dpd_tstat_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_eam_alloy_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_eam_fs_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_eam_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_exp6_rx_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_gran_hooke_history_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_hybrid_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_hybrid_overlay_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_charmm_coul_charmm_implicit_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_charmm_coul_charmm_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_charmm_coul_long_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_class2_coul_cut_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_class2_coul_long_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_class2_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_cut_coul_cut_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_cut_coul_debye_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_cut_coul_dsf_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_cut_coul_long_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_cut_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_expand_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_gromacs_coul_gromacs_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_gromacs_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_sdk_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_morse_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_multi_lucy_rx_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_pace_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_reaxff_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_snap_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_sw_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_table_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_table_rx_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_tersoff_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_tersoff_mod_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_tersoff_zbl_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_vashishta_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_yukawa_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_zbl_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_eam_alloy_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_eam_fs_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_eam_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_ilp_graphene_hbn_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_ilp_tmd_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_lj_charmm_coul_long_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_lj_cut_coul_long_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_lj_cut_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_lj_cut_tip4p_long_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_lj_long_coul_long_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_morse_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_saip_metal_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_ufm_opt.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_airebo_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_airebo_morse_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_buck_coul_cut_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_buck_coul_long_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_buck_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_dpd_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_eam_alloy_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_eam_fs_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_eam_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_gayberne_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_lj_charmm_coul_charmm_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_lj_charmm_coul_long_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_lj_cut_coul_long_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_lj_cut_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_lj_long_coul_long_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_rebo_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_sw_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_tersoff_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_adp_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_agni_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_airebo_morse_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_airebo_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_beck_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_born_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_born_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_born_coul_wolf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_born_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_brownian_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_brownian_poly_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_buck_coul_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_buck_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_buck_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_buck_long_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_buck_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_colloid_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_comb_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_cut_global_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_cut_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_debye_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_diel_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_dsf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_long_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_wolf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_dpd_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_dpd_tstat_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_eam_alloy_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_eam_fs_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_eam_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_edip_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_eim_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gauss_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gauss_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gayberne_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gran_hertz_history_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gran_hooke_history_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gran_hooke_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_harmonic_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_hbond_dreiding_lj_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_hbond_dreiding_morse_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj96_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_charmm_coul_charmm_implicit_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_charmm_coul_charmm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_charmm_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_charmm_coul_long_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_charmm_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_class2_coul_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_class2_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_class2_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cubic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_cut_dielectric_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_cut_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_debye_dielectric_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_debye_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_dsf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_long_dielectric_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_long_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_wolf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_dipole_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_thole_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_tip4p_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_tip4p_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_tip4p_long_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_expand_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_gromacs_coul_gromacs_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_gromacs_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_long_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_long_tip4p_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_relres_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_sdk_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_sdk_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_sdk_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_sf_dipole_sf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_smooth_linear_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_smooth_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lubricate_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lubricate_poly_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_meam_spline_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_morse_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_morse_smooth_linear_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_nm_cut_coul_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_nm_cut_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_nm_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_peri_lps_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_peri_pmb_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_reaxff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_rebo_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_resquared_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_sw_mod_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_sw_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_table_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tersoff_mod_c_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tersoff_mod_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tersoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tersoff_table_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tersoff_zbl_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tip4p_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tip4p_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tip4p_long_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_ufm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_vashishta_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_vashishta_table_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_yukawa_colloid_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_yukawa_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_zbl_omp.h"
diff --git a/doc/styles/packages_pair.h.tmp b/doc/styles/packages_pair.h.tmp
deleted file mode 100644
index 2f92e7f415..0000000000
--- a/doc/styles/packages_pair.h.tmp
+++ /dev/null
@@ -1,1485 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/pair_gayberne.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/pair_line_lj.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/pair_resquared.h"
-#undef PACKAGE
-#define PACKAGE "ASPHERE"
-#include "ASPHERE/pair_tri_lj.h"
-#undef PACKAGE
-#define PACKAGE "AWPMD"
-#include "AWPMD/pair_awpmd_cut.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/pair_body_nparticle.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/pair_body_rounded_polygon.h"
-#undef PACKAGE
-#define PACKAGE "BODY"
-#include "BODY/pair_body_rounded_polyhedron.h"
-#undef PACKAGE
-#define PACKAGE "BPM"
-#include "BPM/pair_bpm_spring.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna2_coaxstk.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna2_dh.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna2_excv.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna_coaxstk.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna_excv.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna_hbond.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna_stk.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxdna_xstk.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxrna2_dh.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxrna2_excv.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxrna2_hbond.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxrna2_stk.h"
-#undef PACKAGE
-#define PACKAGE "CG-DNA"
-#include "CG-DNA/pair_oxrna2_xstk.h"
-#undef PACKAGE
-#define PACKAGE "CG-SDK"
-#include "CG-SDK/pair_lj_sdk.h"
-#undef PACKAGE
-#define PACKAGE "CG-SDK"
-#include "CG-SDK/pair_lj_sdk_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "CG-SDK"
-#include "CG-SDK/pair_lj_sdk_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/pair_lj_class2.h"
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/pair_lj_class2_coul_cut.h"
-#undef PACKAGE
-#define PACKAGE "CLASS2"
-#include "CLASS2/pair_lj_class2_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_brownian.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_brownian_poly.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_colloid.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_lubricate.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_lubricateU.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_lubricateU_poly.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_lubricate_poly.h"
-#undef PACKAGE
-#define PACKAGE "COLLOID"
-#include "COLLOID/pair_yukawa_colloid.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_coul_cut_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_coul_long_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_lj_cut_coul_cut_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_lj_cut_coul_debye_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_lj_cut_coul_long_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_lj_cut_coul_msm_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIELECTRIC"
-#include "DIELECTRIC/pair_lj_long_coul_long_dielectric.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/pair_lj_cut_dipole_cut.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/pair_lj_cut_dipole_long.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/pair_lj_long_dipole_long.h"
-#undef PACKAGE
-#define PACKAGE "DIPOLE"
-#include "DIPOLE/pair_lj_sf_dipole_sf.h"
-#undef PACKAGE
-#define PACKAGE "DPD-BASIC"
-#include "DPD-BASIC/pair_dpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-BASIC"
-#include "DPD-BASIC/pair_dpd_ext.h"
-#undef PACKAGE
-#define PACKAGE "DPD-BASIC"
-#include "DPD-BASIC/pair_dpd_ext_tstat.h"
-#undef PACKAGE
-#define PACKAGE "DPD-BASIC"
-#include "DPD-BASIC/pair_dpd_tstat.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/pair_edpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/pair_mdpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/pair_mdpd_rhosum.h"
-#undef PACKAGE
-#define PACKAGE "DPD-MESO"
-#include "DPD-MESO/pair_tdpd.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_dpd_fdt.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_dpd_fdt_energy.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_exp6_rx.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_multi_lucy.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_multi_lucy_rx.h"
-#undef PACKAGE
-#define PACKAGE "DPD-REACT"
-#include "DPD-REACT/pair_table_rx.h"
-#undef PACKAGE
-#define PACKAGE "DPD-SMOOTH"
-#include "DPD-SMOOTH/pair_sdpd_taitwater_isothermal.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/pair_coul_tt.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/pair_lj_cut_thole_long.h"
-#undef PACKAGE
-#define PACKAGE "DRUDE"
-#include "DRUDE/pair_thole.h"
-#undef PACKAGE
-#define PACKAGE "EFF"
-#include "EFF/pair_eff_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_beck.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_born_coul_dsf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_born_coul_wolf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_buck_mdf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_cosine_squared.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_coul_cut_global.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_coul_diel.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_coul_exclude.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_coul_slater_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_coul_slater_long.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_e3b.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_gauss.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_gauss_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_harmonic_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lennard_mdf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj96_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_cubic.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_cut_coul_debye.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_cut_coul_dsf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_cut_coul_wolf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_expand_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_gromacs.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_gromacs_coul_gromacs.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_mdf.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_relres.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_smooth.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_lj_smooth_linear.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_mie_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_momb.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_morse_smooth_linear.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_nm_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_nm_cut_coul_cut.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_nm_cut_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_nm_cut_split.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_ufm.h"
-#undef PACKAGE
-#define PACKAGE "EXTRA-PAIR"
-#include "EXTRA-PAIR/pair_wf_cut.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_coul_cut_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_coul_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_charmm_coul_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_class2_coul_cut_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_class2_coul_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_class2_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_cut_coul_cut_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_cut_coul_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_cut_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_lj_cut_tip4p_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_morse_soft.h"
-#undef PACKAGE
-#define PACKAGE "FEP"
-#include "FEP/pair_tip4p_long_soft.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/pair_gran_hertz_history.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/pair_gran_hooke.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/pair_gran_hooke_history.h"
-#undef PACKAGE
-#define PACKAGE "GRANULAR"
-#include "GRANULAR/pair_granular.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_coul_shield.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_drip.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_ilp_graphene_hbn.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_ilp_tmd.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_kolmogorov_crespi_full.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_kolmogorov_crespi_z.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_lebedeva_z.h"
-#undef PACKAGE
-#define PACKAGE "INTERLAYER"
-#include "INTERLAYER/pair_saip_metal.h"
-#undef PACKAGE
-#define PACKAGE "KIM"
-#include "KIM/pair_kim.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_born_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_born_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_buck_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_buck_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_buck_long_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_coul_streitz.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_charmm_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_charmm_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_charmmfsw_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_cut_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_cut_coul_msm.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_cut_tip4p_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_long_coul_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_lj_long_tip4p_long.h"
-#undef PACKAGE
-#define PACKAGE "KSPACE"
-#include "KSPACE/pair_tip4p_long.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/pair_smd_hertz.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/pair_smd_tlsph.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/pair_smd_triangulated_surface.h"
-#undef PACKAGE
-#define PACKAGE "MACHDYN"
-#include "MACHDYN/pair_smd_ulsph.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_adp.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_airebo.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_airebo_morse.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_atm.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_bop.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_comb.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_comb3.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eam.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eam_alloy.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eam_cd.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eam_fs.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eam_he.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_edip.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_edip_multi.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_eim.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_extep.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_gw.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_gw_zbl.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_lcbop.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_local_density.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_meam_spline.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_meam_sw_spline.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_nb3b_harmonic.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_polymorphic.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_rebo.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_sw.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_sw_angle_table.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_sw_mod.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_tersoff.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_tersoff_mod.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_tersoff_mod_c.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_tersoff_table.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_tersoff_zbl.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_threebody_table.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_vashishta.h"
-#undef PACKAGE
-#define PACKAGE "MANYBODY"
-#include "MANYBODY/pair_vashishta_table.h"
-#undef PACKAGE
-#define PACKAGE "MC"
-#include "MC/pair_dsmc.h"
-#undef PACKAGE
-#define PACKAGE "MEAM"
-#include "MEAM/pair_meam.h"
-#undef PACKAGE
-#define PACKAGE "MESONT"
-#include "MESONT/pair_mesocnt.h"
-#undef PACKAGE
-#define PACKAGE "MESONT"
-#include "MESONT/pair_mesont_tpm.h"
-#undef PACKAGE
-#define PACKAGE "MGPT"
-#include "MGPT/pair_mgpt.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/pair_agni.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/pair_list.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/pair_srp.h"
-#undef PACKAGE
-#define PACKAGE "MISC"
-#include "MISC/pair_tracker.h"
-#undef PACKAGE
-#define PACKAGE "ML-HDNNP"
-#include "ML-HDNNP/pair_hdnnp.h"
-#undef PACKAGE
-#define PACKAGE "ML-IAP"
-#include "ML-IAP/pair_mliap.h"
-#undef PACKAGE
-#define PACKAGE "ML-PACE"
-#include "ML-PACE/pair_pace.h"
-#undef PACKAGE
-#define PACKAGE "ML-QUIP"
-#include "ML-QUIP/pair_quip.h"
-#undef PACKAGE
-#define PACKAGE "ML-RANN"
-#include "ML-RANN/pair_rann.h"
-#undef PACKAGE
-#define PACKAGE "ML-SNAP"
-#include "ML-SNAP/pair_snap.h"
-#undef PACKAGE
-#define PACKAGE "MOFFF"
-#include "MOFFF/pair_buck6d_coul_gauss_dsf.h"
-#undef PACKAGE
-#define PACKAGE "MOFFF"
-#include "MOFFF/pair_buck6d_coul_gauss_long.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_hbond_dreiding_lj.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_hbond_dreiding_morse.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_lj_charmm_coul_charmm.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_lj_charmm_coul_charmm_implicit.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_lj_cut_tip4p_cut.h"
-#undef PACKAGE
-#define PACKAGE "MOLECULE"
-#include "MOLECULE/pair_tip4p_cut.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/pair_peri_eps.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/pair_peri_lps.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/pair_peri_pmb.h"
-#undef PACKAGE
-#define PACKAGE "PERI"
-#include "PERI/pair_peri_ves.h"
-#undef PACKAGE
-#define PACKAGE "PYTHON"
-#include "PYTHON/pair_python.h"
-#undef PACKAGE
-#define PACKAGE "REAXFF"
-#include "REAXFF/pair_reaxff.h"
-#undef PACKAGE
-#define PACKAGE "SMTBQ"
-#include "SMTBQ/pair_smatb.h"
-#undef PACKAGE
-#define PACKAGE "SMTBQ"
-#include "SMTBQ/pair_smatb_single.h"
-#undef PACKAGE
-#define PACKAGE "SMTBQ"
-#include "SMTBQ/pair_smtbq.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_heatconduction.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_idealgas.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_lj.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_rhosum.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_taitwater.h"
-#undef PACKAGE
-#define PACKAGE "SPH"
-#include "SPH/pair_sph_taitwater_morris.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_dipole_cut.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_dipole_long.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_dmi.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_exchange.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_exchange_biquadratic.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_magelec.h"
-#undef PACKAGE
-#define PACKAGE "SPIN"
-#include "SPIN/pair_spin_neel.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/pair_lj_switch3_coulgauss_long.h"
-#undef PACKAGE
-#define PACKAGE "YAFF"
-#include "YAFF/pair_mm3_switch3_coulgauss_long.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_born_coul_dsf_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_born_coul_long_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_born_coul_wolf_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_buck_coul_long_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_coul_long_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_coul_wolf_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_lj_class2_coul_long_cs.h"
-#undef PACKAGE
-#define PACKAGE "CORESHELL"
-#include "CORESHELL/pair_lj_cut_coul_long_cs.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_beck_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_born_coul_long_cs_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_born_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_born_coul_wolf_cs_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_born_coul_wolf_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_born_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_buck_coul_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_buck_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_buck_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_colloid_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_coul_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_coul_debye_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_coul_dsf_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_coul_long_cs_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_dpd_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_dpd_tstat_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_eam_alloy_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_eam_fs_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_eam_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_gauss_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_gayberne_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj96_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_charmm_coul_charmm_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_charmm_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_class2_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_class2_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cubic_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_coul_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_coul_debye_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_coul_dsf_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_coul_msm_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_dipole_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_dipole_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_cut_tip4p_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_expand_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_expand_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_gromacs_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_sdk_coul_long_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_sdk_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_sf_dipole_sf_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_lj_smooth_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_mie_cut_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_morse_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_resquared_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_soft_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_sw_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_table_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_tersoff_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_tersoff_mod_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_tersoff_zbl_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_ufm_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_vashishta_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_yukawa_colloid_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_yukawa_gpu.h"
-#undef PACKAGE
-#define PACKAGE "GPU"
-#include "GPU/pair_zbl_gpu.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_adp_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_buck_coul_cut_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_buck_coul_long_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_buck_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_coul_cut_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_coul_debye_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_coul_dsf_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_coul_long_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_coul_wolf_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_dpd_ext_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_dpd_ext_tstat_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_dpd_fdt_energy_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_dpd_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_dpd_tstat_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_eam_alloy_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_eam_fs_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_eam_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_exp6_rx_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_gran_hooke_history_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_hybrid_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_hybrid_overlay_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_charmm_coul_charmm_implicit_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_charmm_coul_charmm_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_charmm_coul_long_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_class2_coul_cut_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_class2_coul_long_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_class2_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_cut_coul_cut_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_cut_coul_debye_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_cut_coul_dsf_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_cut_coul_long_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_cut_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_expand_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_gromacs_coul_gromacs_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_gromacs_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_lj_sdk_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_morse_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_multi_lucy_rx_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_pace_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_reaxff_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_snap_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_sw_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_table_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_table_rx_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_tersoff_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_tersoff_mod_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_tersoff_zbl_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_vashishta_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_yukawa_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/pair_zbl_kokkos.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_eam_alloy_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_eam_fs_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_eam_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_ilp_graphene_hbn_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_ilp_tmd_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_lj_charmm_coul_long_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_lj_cut_coul_long_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_lj_cut_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_lj_cut_tip4p_long_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_lj_long_coul_long_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_morse_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_saip_metal_opt.h"
-#undef PACKAGE
-#define PACKAGE "OPT"
-#include "OPT/pair_ufm_opt.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_airebo_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_airebo_morse_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_buck_coul_cut_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_buck_coul_long_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_buck_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_dpd_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_eam_alloy_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_eam_fs_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_eam_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_gayberne_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_lj_charmm_coul_charmm_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_lj_charmm_coul_long_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_lj_cut_coul_long_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_lj_cut_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_lj_long_coul_long_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_rebo_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_sw_intel.h"
-#undef PACKAGE
-#define PACKAGE "INTEL"
-#include "INTEL/pair_tersoff_intel.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_adp_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_agni_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_airebo_morse_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_airebo_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_beck_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_born_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_born_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_born_coul_wolf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_born_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_brownian_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_brownian_poly_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_buck_coul_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_buck_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_buck_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_buck_long_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_buck_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_colloid_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_comb_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_cut_global_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_cut_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_debye_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_diel_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_dsf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_long_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_coul_wolf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_dpd_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_dpd_tstat_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_eam_alloy_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_eam_fs_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_eam_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_edip_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_eim_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gauss_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gauss_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gayberne_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gran_hertz_history_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gran_hooke_history_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_gran_hooke_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_harmonic_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_hbond_dreiding_lj_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_hbond_dreiding_morse_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj96_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_charmm_coul_charmm_implicit_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_charmm_coul_charmm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_charmm_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_charmm_coul_long_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_charmm_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_class2_coul_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_class2_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_class2_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cubic_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_cut_dielectric_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_cut_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_debye_dielectric_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_debye_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_dsf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_long_dielectric_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_long_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_coul_wolf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_dipole_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_thole_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_tip4p_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_tip4p_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_cut_tip4p_long_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_expand_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_gromacs_coul_gromacs_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_gromacs_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_long_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_long_tip4p_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_relres_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_sdk_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_sdk_coul_msm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_sdk_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_sf_dipole_sf_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_smooth_linear_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lj_smooth_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lubricate_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_lubricate_poly_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_meam_spline_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_morse_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_morse_smooth_linear_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_nm_cut_coul_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_nm_cut_coul_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_nm_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_peri_lps_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_peri_pmb_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_reaxff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_rebo_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_resquared_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_sw_mod_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_sw_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_table_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tersoff_mod_c_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tersoff_mod_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tersoff_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tersoff_table_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tersoff_zbl_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tip4p_cut_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tip4p_long_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_tip4p_long_soft_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_ufm_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_vashishta_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_vashishta_table_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_yukawa_colloid_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_yukawa_omp.h"
-#undef PACKAGE
-#define PACKAGE "OPENMP"
-#include "OPENMP/pair_zbl_omp.h"
diff --git a/doc/styles/packages_reader.h b/doc/styles/packages_reader.h
deleted file mode 100644
index 398c91c92c..0000000000
--- a/doc/styles/packages_reader.h
+++ /dev/null
@@ -1,6 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "ADIOS"
-#include "ADIOS/reader_adios.h"
-#undef PACKAGE
-#define PACKAGE "MOLFILE"
-#include "MOLFILE/reader_molfile.h"
diff --git a/doc/styles/packages_reader.h.tmp b/doc/styles/packages_reader.h.tmp
deleted file mode 100644
index 398c91c92c..0000000000
--- a/doc/styles/packages_reader.h.tmp
+++ /dev/null
@@ -1,6 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "ADIOS"
-#include "ADIOS/reader_adios.h"
-#undef PACKAGE
-#define PACKAGE "MOLFILE"
-#include "MOLFILE/reader_molfile.h"
diff --git a/doc/styles/packages_region.h b/doc/styles/packages_region.h
deleted file mode 100644
index c0b8f666e7..0000000000
--- a/doc/styles/packages_region.h
+++ /dev/null
@@ -1,3 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/region_block_kokkos.h"
diff --git a/doc/styles/packages_region.h.tmp b/doc/styles/packages_region.h.tmp
deleted file mode 100644
index c0b8f666e7..0000000000
--- a/doc/styles/packages_region.h.tmp
+++ /dev/null
@@ -1,3 +0,0 @@
-#undef PACKAGE
-#define PACKAGE "KOKKOS"
-#include "KOKKOS/region_block_kokkos.h"
diff --git a/doc/styles/style_angle.h b/doc/styles/style_angle.h
deleted file mode 100644
index f0df2bd9aa..0000000000
--- a/doc/styles/style_angle.h
+++ /dev/null
@@ -1,8 +0,0 @@
-#include "angle_charmm.h"
-#include "angle_cosine.h"
-#include "angle_cosine_squared.h"
-#include "angle_deprecated.h"
-#include "angle_harmonic.h"
-#include "angle_hybrid.h"
-#include "angle_table.h"
-#include "angle_zero.h"
diff --git a/doc/styles/style_angle.h.tmp b/doc/styles/style_angle.h.tmp
deleted file mode 100644
index f0df2bd9aa..0000000000
--- a/doc/styles/style_angle.h.tmp
+++ /dev/null
@@ -1,8 +0,0 @@
-#include "angle_charmm.h"
-#include "angle_cosine.h"
-#include "angle_cosine_squared.h"
-#include "angle_deprecated.h"
-#include "angle_harmonic.h"
-#include "angle_hybrid.h"
-#include "angle_table.h"
-#include "angle_zero.h"
diff --git a/doc/styles/style_atom.h b/doc/styles/style_atom.h
deleted file mode 100644
index ae15a5cb9b..0000000000
--- a/doc/styles/style_atom.h
+++ /dev/null
@@ -1,13 +0,0 @@
-#include "atom_vec_angle.h"
-#include "atom_vec_atomic.h"
-#include "atom_vec_body.h"
-#include "atom_vec_bond.h"
-#include "atom_vec_charge.h"
-#include "atom_vec_ellipsoid.h"
-#include "atom_vec_full.h"
-#include "atom_vec_hybrid.h"
-#include "atom_vec_line.h"
-#include "atom_vec_molecular.h"
-#include "atom_vec_sphere.h"
-#include "atom_vec_template.h"
-#include "atom_vec_tri.h"
diff --git a/doc/styles/style_atom.h.tmp b/doc/styles/style_atom.h.tmp
deleted file mode 100644
index ae15a5cb9b..0000000000
--- a/doc/styles/style_atom.h.tmp
+++ /dev/null
@@ -1,13 +0,0 @@
-#include "atom_vec_angle.h"
-#include "atom_vec_atomic.h"
-#include "atom_vec_body.h"
-#include "atom_vec_bond.h"
-#include "atom_vec_charge.h"
-#include "atom_vec_ellipsoid.h"
-#include "atom_vec_full.h"
-#include "atom_vec_hybrid.h"
-#include "atom_vec_line.h"
-#include "atom_vec_molecular.h"
-#include "atom_vec_sphere.h"
-#include "atom_vec_template.h"
-#include "atom_vec_tri.h"
diff --git a/doc/styles/style_body.h b/doc/styles/style_body.h
deleted file mode 100644
index e69de29bb2..0000000000
diff --git a/doc/styles/style_body.h.tmp b/doc/styles/style_body.h.tmp
deleted file mode 100644
index e69de29bb2..0000000000
diff --git a/doc/styles/style_bond.h b/doc/styles/style_bond.h
deleted file mode 100644
index 3268f2d671..0000000000
--- a/doc/styles/style_bond.h
+++ /dev/null
@@ -1,10 +0,0 @@
-#include "bond_deprecated.h"
-#include "bond_fene.h"
-#include "bond_fene_expand.h"
-#include "bond_gromos.h"
-#include "bond_harmonic.h"
-#include "bond_hybrid.h"
-#include "bond_morse.h"
-#include "bond_quartic.h"
-#include "bond_table.h"
-#include "bond_zero.h"
diff --git a/doc/styles/style_bond.h.tmp b/doc/styles/style_bond.h.tmp
deleted file mode 100644
index 3268f2d671..0000000000
--- a/doc/styles/style_bond.h.tmp
+++ /dev/null
@@ -1,10 +0,0 @@
-#include "bond_deprecated.h"
-#include "bond_fene.h"
-#include "bond_fene_expand.h"
-#include "bond_gromos.h"
-#include "bond_harmonic.h"
-#include "bond_hybrid.h"
-#include "bond_morse.h"
-#include "bond_quartic.h"
-#include "bond_table.h"
-#include "bond_zero.h"
diff --git a/doc/styles/style_command.h b/doc/styles/style_command.h
deleted file mode 100644
index 423ff2db3f..0000000000
--- a/doc/styles/style_command.h
+++ /dev/null
@@ -1,25 +0,0 @@
-#include "balance.h"
-#include "change_box.h"
-#include "create_atoms.h"
-#include "create_bonds.h"
-#include "create_box.h"
-#include "delete_atoms.h"
-#include "delete_bonds.h"
-#include "deprecated.h"
-#include "displace_atoms.h"
-#include "info.h"
-#include "minimize.h"
-#include "read_data.h"
-#include "read_dump.h"
-#include "read_restart.h"
-#include "replicate.h"
-#include "rerun.h"
-#include "reset_atom_ids.h"
-#include "reset_mol_ids.h"
-#include "run.h"
-#include "set.h"
-#include "velocity.h"
-#include "write_coeff.h"
-#include "write_data.h"
-#include "write_dump.h"
-#include "write_restart.h"
diff --git a/doc/styles/style_command.h.tmp b/doc/styles/style_command.h.tmp
deleted file mode 100644
index 423ff2db3f..0000000000
--- a/doc/styles/style_command.h.tmp
+++ /dev/null
@@ -1,25 +0,0 @@
-#include "balance.h"
-#include "change_box.h"
-#include "create_atoms.h"
-#include "create_bonds.h"
-#include "create_box.h"
-#include "delete_atoms.h"
-#include "delete_bonds.h"
-#include "deprecated.h"
-#include "displace_atoms.h"
-#include "info.h"
-#include "minimize.h"
-#include "read_data.h"
-#include "read_dump.h"
-#include "read_restart.h"
-#include "replicate.h"
-#include "rerun.h"
-#include "reset_atom_ids.h"
-#include "reset_mol_ids.h"
-#include "run.h"
-#include "set.h"
-#include "velocity.h"
-#include "write_coeff.h"
-#include "write_data.h"
-#include "write_dump.h"
-#include "write_restart.h"
diff --git a/doc/styles/style_compute.h b/doc/styles/style_compute.h
deleted file mode 100644
index 5b63f8064e..0000000000
--- a/doc/styles/style_compute.h
+++ /dev/null
@@ -1,72 +0,0 @@
-#include "compute_aggregate_atom.h"
-#include "compute_angle.h"
-#include "compute_angle_local.h"
-#include "compute_angmom_chunk.h"
-#include "compute_bond.h"
-#include "compute_bond_local.h"
-#include "compute_centro_atom.h"
-#include "compute_centroid_stress_atom.h"
-#include "compute_chunk_atom.h"
-#include "compute_chunk_spread_atom.h"
-#include "compute_cluster_atom.h"
-#include "compute_cna_atom.h"
-#include "compute_com.h"
-#include "compute_com_chunk.h"
-#include "compute_coord_atom.h"
-#include "compute_deprecated.h"
-#include "compute_dihedral.h"
-#include "compute_dihedral_local.h"
-#include "compute_dipole.h"
-#include "compute_dipole_chunk.h"
-#include "compute_displace_atom.h"
-#include "compute_erotate_rigid.h"
-#include "compute_erotate_sphere.h"
-#include "compute_erotate_sphere_atom.h"
-#include "compute_fragment_atom.h"
-#include "compute_global_atom.h"
-#include "compute_group_group.h"
-#include "compute_gyration.h"
-#include "compute_gyration_chunk.h"
-#include "compute_heat_flux.h"
-#include "compute_improper.h"
-#include "compute_improper_local.h"
-#include "compute_inertia_chunk.h"
-#include "compute_ke.h"
-#include "compute_ke_atom.h"
-#include "compute_ke_rigid.h"
-#include "compute_msd.h"
-#include "compute_msd_chunk.h"
-#include "compute_omega_chunk.h"
-#include "compute_orientorder_atom.h"
-#include "compute_pair.h"
-#include "compute_pair_local.h"
-#include "compute_pe.h"
-#include "compute_pe_atom.h"
-#include "compute_podfit.h"
-#include "compute_pressure.h"
-#include "compute_property_atom.h"
-#include "compute_property_chunk.h"
-#include "compute_property_local.h"
-#include "compute_rdf.h"
-#include "compute_reduce.h"
-#include "compute_reduce_chunk.h"
-#include "compute_reduce_region.h"
-#include "compute_rigid_local.h"
-#include "compute_slice.h"
-#include "compute_sna_atom.h"
-#include "compute_snad_atom.h"
-#include "compute_snap.h"
-#include "compute_snav_atom.h"
-#include "compute_stress_atom.h"
-#include "compute_temp.h"
-#include "compute_temp_chunk.h"
-#include "compute_temp_com.h"
-#include "compute_temp_deform.h"
-#include "compute_temp_partial.h"
-#include "compute_temp_profile.h"
-#include "compute_temp_ramp.h"
-#include "compute_temp_region.h"
-#include "compute_temp_sphere.h"
-#include "compute_torque_chunk.h"
-#include "compute_vacf.h"
-#include "compute_vcm_chunk.h"
diff --git a/doc/styles/style_compute.h.tmp b/doc/styles/style_compute.h.tmp
deleted file mode 100644
index 5b63f8064e..0000000000
--- a/doc/styles/style_compute.h.tmp
+++ /dev/null
@@ -1,72 +0,0 @@
-#include "compute_aggregate_atom.h"
-#include "compute_angle.h"
-#include "compute_angle_local.h"
-#include "compute_angmom_chunk.h"
-#include "compute_bond.h"
-#include "compute_bond_local.h"
-#include "compute_centro_atom.h"
-#include "compute_centroid_stress_atom.h"
-#include "compute_chunk_atom.h"
-#include "compute_chunk_spread_atom.h"
-#include "compute_cluster_atom.h"
-#include "compute_cna_atom.h"
-#include "compute_com.h"
-#include "compute_com_chunk.h"
-#include "compute_coord_atom.h"
-#include "compute_deprecated.h"
-#include "compute_dihedral.h"
-#include "compute_dihedral_local.h"
-#include "compute_dipole.h"
-#include "compute_dipole_chunk.h"
-#include "compute_displace_atom.h"
-#include "compute_erotate_rigid.h"
-#include "compute_erotate_sphere.h"
-#include "compute_erotate_sphere_atom.h"
-#include "compute_fragment_atom.h"
-#include "compute_global_atom.h"
-#include "compute_group_group.h"
-#include "compute_gyration.h"
-#include "compute_gyration_chunk.h"
-#include "compute_heat_flux.h"
-#include "compute_improper.h"
-#include "compute_improper_local.h"
-#include "compute_inertia_chunk.h"
-#include "compute_ke.h"
-#include "compute_ke_atom.h"
-#include "compute_ke_rigid.h"
-#include "compute_msd.h"
-#include "compute_msd_chunk.h"
-#include "compute_omega_chunk.h"
-#include "compute_orientorder_atom.h"
-#include "compute_pair.h"
-#include "compute_pair_local.h"
-#include "compute_pe.h"
-#include "compute_pe_atom.h"
-#include "compute_podfit.h"
-#include "compute_pressure.h"
-#include "compute_property_atom.h"
-#include "compute_property_chunk.h"
-#include "compute_property_local.h"
-#include "compute_rdf.h"
-#include "compute_reduce.h"
-#include "compute_reduce_chunk.h"
-#include "compute_reduce_region.h"
-#include "compute_rigid_local.h"
-#include "compute_slice.h"
-#include "compute_sna_atom.h"
-#include "compute_snad_atom.h"
-#include "compute_snap.h"
-#include "compute_snav_atom.h"
-#include "compute_stress_atom.h"
-#include "compute_temp.h"
-#include "compute_temp_chunk.h"
-#include "compute_temp_com.h"
-#include "compute_temp_deform.h"
-#include "compute_temp_partial.h"
-#include "compute_temp_profile.h"
-#include "compute_temp_ramp.h"
-#include "compute_temp_region.h"
-#include "compute_temp_sphere.h"
-#include "compute_torque_chunk.h"
-#include "compute_vacf.h"
-#include "compute_vcm_chunk.h"
diff --git a/doc/styles/style_dihedral.h b/doc/styles/style_dihedral.h
deleted file mode 100644
index 34360e2cd1..0000000000
--- a/doc/styles/style_dihedral.h
+++ /dev/null
@@ -1,9 +0,0 @@
-#include "dihedral_charmm.h"
-#include "dihedral_charmmfsw.h"
-#include "dihedral_deprecated.h"
-#include "dihedral_harmonic.h"
-#include "dihedral_hybrid.h"
-#include "dihedral_multi_harmonic.h"
-#include "dihedral_opls.h"
-#include "dihedral_table.h"
-#include "dihedral_zero.h"
diff --git a/doc/styles/style_dihedral.h.tmp b/doc/styles/style_dihedral.h.tmp
deleted file mode 100644
index 34360e2cd1..0000000000
--- a/doc/styles/style_dihedral.h.tmp
+++ /dev/null
@@ -1,9 +0,0 @@
-#include "dihedral_charmm.h"
-#include "dihedral_charmmfsw.h"
-#include "dihedral_deprecated.h"
-#include "dihedral_harmonic.h"
-#include "dihedral_hybrid.h"
-#include "dihedral_multi_harmonic.h"
-#include "dihedral_opls.h"
-#include "dihedral_table.h"
-#include "dihedral_zero.h"
diff --git a/doc/styles/style_dump.h b/doc/styles/style_dump.h
deleted file mode 100644
index ef3643b956..0000000000
--- a/doc/styles/style_dump.h
+++ /dev/null
@@ -1,8 +0,0 @@
-#include "dump_atom.h"
-#include "dump_cfg.h"
-#include "dump_custom.h"
-#include "dump_deprecated.h"
-#include "dump_image.h"
-#include "dump_local.h"
-#include "dump_movie.h"
-#include "dump_xyz.h"
diff --git a/doc/styles/style_dump.h.tmp b/doc/styles/style_dump.h.tmp
deleted file mode 100644
index ef3643b956..0000000000
--- a/doc/styles/style_dump.h.tmp
+++ /dev/null
@@ -1,8 +0,0 @@
-#include "dump_atom.h"
-#include "dump_cfg.h"
-#include "dump_custom.h"
-#include "dump_deprecated.h"
-#include "dump_image.h"
-#include "dump_local.h"
-#include "dump_movie.h"
-#include "dump_xyz.h"
diff --git a/doc/styles/style_fix.h b/doc/styles/style_fix.h
deleted file mode 100644
index af85543bca..0000000000
--- a/doc/styles/style_fix.h
+++ /dev/null
@@ -1,90 +0,0 @@
-#include "fix_adapt.h"
-#include "fix_addforce.h"
-#include "fix_ave_atom.h"
-#include "fix_ave_chunk.h"
-#include "fix_ave_correlate.h"
-#include "fix_ave_histo.h"
-#include "fix_ave_histo_weight.h"
-#include "fix_ave_time.h"
-#include "fix_aveforce.h"
-#include "fix_balance.h"
-#include "fix_bond_history.h"
-#include "fix_box_relax.h"
-#include "fix_cmap.h"
-#include "fix_deform.h"
-#include "fix_deposit.h"
-#include "fix_deprecated.h"
-#include "fix_dt_reset.h"
-#include "fix_dummy.h"
-#include "fix_efield.h"
-#include "fix_ehex.h"
-#include "fix_enforce2d.h"
-#include "fix_evaporate.h"
-#include "fix_external.h"
-#include "fix_gravity.h"
-#include "fix_group.h"
-#include "fix_halt.h"
-#include "fix_heat.h"
-#include "fix_indent.h"
-#include "fix_langevin.h"
-#include "fix_lineforce.h"
-#include "fix_minimize.h"
-#include "fix_momentum.h"
-#include "fix_move.h"
-#include "fix_neigh_history.h"
-#include "fix_nph.h"
-#include "fix_nph_sphere.h"
-#include "fix_npt.h"
-#include "fix_npt_sphere.h"
-#include "fix_nve.h"
-#include "fix_nve_limit.h"
-#include "fix_nve_noforce.h"
-#include "fix_nve_sphere.h"
-#include "fix_nvt.h"
-#include "fix_nvt_sllod.h"
-#include "fix_nvt_sphere.h"
-#include "fix_planeforce.h"
-#include "fix_press_berendsen.h"
-#include "fix_print.h"
-#include "fix_property_atom.h"
-#include "fix_python_invoke.h"
-#include "fix_python_move.h"
-#include "fix_qeq_comb.h"
-#include "fix_rattle.h"
-#include "fix_read_restart.h"
-#include "fix_recenter.h"
-#include "fix_respa.h"
-#include "fix_restrain.h"
-#include "fix_rigid.h"
-#include "fix_rigid_nph.h"
-#include "fix_rigid_nph_small.h"
-#include "fix_rigid_npt.h"
-#include "fix_rigid_npt_small.h"
-#include "fix_rigid_nve.h"
-#include "fix_rigid_nve_small.h"
-#include "fix_rigid_nvt.h"
-#include "fix_rigid_nvt_small.h"
-#include "fix_rigid_small.h"
-#include "fix_setforce.h"
-#include "fix_shake.h"
-#include "fix_spring.h"
-#include "fix_spring_chunk.h"
-#include "fix_spring_self.h"
-#include "fix_store.h"
-#include "fix_store_force.h"
-#include "fix_store_local.h"
-#include "fix_store_state.h"
-#include "fix_temp_berendsen.h"
-#include "fix_temp_rescale.h"
-#include "fix_thermal_conductivity.h"
-#include "fix_tune_kspace.h"
-#include "fix_update_special_bonds.h"
-#include "fix_vector.h"
-#include "fix_viscous.h"
-#include "fix_wall_harmonic.h"
-#include "fix_wall_lj1043.h"
-#include "fix_wall_lj126.h"
-#include "fix_wall_lj93.h"
-#include "fix_wall_morse.h"
-#include "fix_wall_reflect.h"
-#include "fix_wall_region.h"
diff --git a/doc/styles/style_fix.h.tmp b/doc/styles/style_fix.h.tmp
deleted file mode 100644
index af85543bca..0000000000
--- a/doc/styles/style_fix.h.tmp
+++ /dev/null
@@ -1,90 +0,0 @@
-#include "fix_adapt.h"
-#include "fix_addforce.h"
-#include "fix_ave_atom.h"
-#include "fix_ave_chunk.h"
-#include "fix_ave_correlate.h"
-#include "fix_ave_histo.h"
-#include "fix_ave_histo_weight.h"
-#include "fix_ave_time.h"
-#include "fix_aveforce.h"
-#include "fix_balance.h"
-#include "fix_bond_history.h"
-#include "fix_box_relax.h"
-#include "fix_cmap.h"
-#include "fix_deform.h"
-#include "fix_deposit.h"
-#include "fix_deprecated.h"
-#include "fix_dt_reset.h"
-#include "fix_dummy.h"
-#include "fix_efield.h"
-#include "fix_ehex.h"
-#include "fix_enforce2d.h"
-#include "fix_evaporate.h"
-#include "fix_external.h"
-#include "fix_gravity.h"
-#include "fix_group.h"
-#include "fix_halt.h"
-#include "fix_heat.h"
-#include "fix_indent.h"
-#include "fix_langevin.h"
-#include "fix_lineforce.h"
-#include "fix_minimize.h"
-#include "fix_momentum.h"
-#include "fix_move.h"
-#include "fix_neigh_history.h"
-#include "fix_nph.h"
-#include "fix_nph_sphere.h"
-#include "fix_npt.h"
-#include "fix_npt_sphere.h"
-#include "fix_nve.h"
-#include "fix_nve_limit.h"
-#include "fix_nve_noforce.h"
-#include "fix_nve_sphere.h"
-#include "fix_nvt.h"
-#include "fix_nvt_sllod.h"
-#include "fix_nvt_sphere.h"
-#include "fix_planeforce.h"
-#include "fix_press_berendsen.h"
-#include "fix_print.h"
-#include "fix_property_atom.h"
-#include "fix_python_invoke.h"
-#include "fix_python_move.h"
-#include "fix_qeq_comb.h"
-#include "fix_rattle.h"
-#include "fix_read_restart.h"
-#include "fix_recenter.h"
-#include "fix_respa.h"
-#include "fix_restrain.h"
-#include "fix_rigid.h"
-#include "fix_rigid_nph.h"
-#include "fix_rigid_nph_small.h"
-#include "fix_rigid_npt.h"
-#include "fix_rigid_npt_small.h"
-#include "fix_rigid_nve.h"
-#include "fix_rigid_nve_small.h"
-#include "fix_rigid_nvt.h"
-#include "fix_rigid_nvt_small.h"
-#include "fix_rigid_small.h"
-#include "fix_setforce.h"
-#include "fix_shake.h"
-#include "fix_spring.h"
-#include "fix_spring_chunk.h"
-#include "fix_spring_self.h"
-#include "fix_store.h"
-#include "fix_store_force.h"
-#include "fix_store_local.h"
-#include "fix_store_state.h"
-#include "fix_temp_berendsen.h"
-#include "fix_temp_rescale.h"
-#include "fix_thermal_conductivity.h"
-#include "fix_tune_kspace.h"
-#include "fix_update_special_bonds.h"
-#include "fix_vector.h"
-#include "fix_viscous.h"
-#include "fix_wall_harmonic.h"
-#include "fix_wall_lj1043.h"
-#include "fix_wall_lj126.h"
-#include "fix_wall_lj93.h"
-#include "fix_wall_morse.h"
-#include "fix_wall_reflect.h"
-#include "fix_wall_region.h"
diff --git a/doc/styles/style_improper.h b/doc/styles/style_improper.h
deleted file mode 100644
index 74969abcc1..0000000000
--- a/doc/styles/style_improper.h
+++ /dev/null
@@ -1,6 +0,0 @@
-#include "improper_cvff.h"
-#include "improper_deprecated.h"
-#include "improper_harmonic.h"
-#include "improper_hybrid.h"
-#include "improper_umbrella.h"
-#include "improper_zero.h"
diff --git a/doc/styles/style_improper.h.tmp b/doc/styles/style_improper.h.tmp
deleted file mode 100644
index 74969abcc1..0000000000
--- a/doc/styles/style_improper.h.tmp
+++ /dev/null
@@ -1,6 +0,0 @@
-#include "improper_cvff.h"
-#include "improper_deprecated.h"
-#include "improper_harmonic.h"
-#include "improper_hybrid.h"
-#include "improper_umbrella.h"
-#include "improper_zero.h"
diff --git a/doc/styles/style_integrate.h b/doc/styles/style_integrate.h
deleted file mode 100644
index eb4536f2cb..0000000000
--- a/doc/styles/style_integrate.h
+++ /dev/null
@@ -1,2 +0,0 @@
-#include "respa.h"
-#include "verlet.h"
diff --git a/doc/styles/style_integrate.h.tmp b/doc/styles/style_integrate.h.tmp
deleted file mode 100644
index eb4536f2cb..0000000000
--- a/doc/styles/style_integrate.h.tmp
+++ /dev/null
@@ -1,2 +0,0 @@
-#include "respa.h"
-#include "verlet.h"
diff --git a/doc/styles/style_kspace.h b/doc/styles/style_kspace.h
deleted file mode 100644
index 5f57518390..0000000000
--- a/doc/styles/style_kspace.h
+++ /dev/null
@@ -1,15 +0,0 @@
-#include "ewald.h"
-#include "ewald_dipole.h"
-#include "ewald_dipole_spin.h"
-#include "ewald_disp.h"
-#include "kspace_deprecated.h"
-#include "msm.h"
-#include "msm_cg.h"
-#include "pppm.h"
-#include "pppm_cg.h"
-#include "pppm_dipole.h"
-#include "pppm_dipole_spin.h"
-#include "pppm_disp.h"
-#include "pppm_disp_tip4p.h"
-#include "pppm_stagger.h"
-#include "pppm_tip4p.h"
diff --git a/doc/styles/style_kspace.h.tmp b/doc/styles/style_kspace.h.tmp
deleted file mode 100644
index 5f57518390..0000000000
--- a/doc/styles/style_kspace.h.tmp
+++ /dev/null
@@ -1,15 +0,0 @@
-#include "ewald.h"
-#include "ewald_dipole.h"
-#include "ewald_dipole_spin.h"
-#include "ewald_disp.h"
-#include "kspace_deprecated.h"
-#include "msm.h"
-#include "msm_cg.h"
-#include "pppm.h"
-#include "pppm_cg.h"
-#include "pppm_dipole.h"
-#include "pppm_dipole_spin.h"
-#include "pppm_disp.h"
-#include "pppm_disp_tip4p.h"
-#include "pppm_stagger.h"
-#include "pppm_tip4p.h"
diff --git a/doc/styles/style_minimize.h b/doc/styles/style_minimize.h
deleted file mode 100644
index 28e80457bf..0000000000
--- a/doc/styles/style_minimize.h
+++ /dev/null
@@ -1,6 +0,0 @@
-#include "min_cg.h"
-#include "min_fire.h"
-#include "min_fire_old.h"
-#include "min_hftn.h"
-#include "min_quickmin.h"
-#include "min_sd.h"
diff --git a/doc/styles/style_minimize.h.tmp b/doc/styles/style_minimize.h.tmp
deleted file mode 100644
index 28e80457bf..0000000000
--- a/doc/styles/style_minimize.h.tmp
+++ /dev/null
@@ -1,6 +0,0 @@
-#include "min_cg.h"
-#include "min_fire.h"
-#include "min_fire_old.h"
-#include "min_hftn.h"
-#include "min_quickmin.h"
-#include "min_sd.h"
diff --git a/doc/styles/style_nbin.h b/doc/styles/style_nbin.h
deleted file mode 100644
index 73b496102b..0000000000
--- a/doc/styles/style_nbin.h
+++ /dev/null
@@ -1,2 +0,0 @@
-#include "nbin_multi.h"
-#include "nbin_standard.h"
diff --git a/doc/styles/style_nbin.h.tmp b/doc/styles/style_nbin.h.tmp
deleted file mode 100644
index 73b496102b..0000000000
--- a/doc/styles/style_nbin.h.tmp
+++ /dev/null
@@ -1,2 +0,0 @@
-#include "nbin_multi.h"
-#include "nbin_standard.h"
diff --git a/doc/styles/style_npair.h b/doc/styles/style_npair.h
deleted file mode 100644
index 19a22cc0b1..0000000000
--- a/doc/styles/style_npair.h
+++ /dev/null
@@ -1,45 +0,0 @@
-#include "npair_copy.h"
-#include "npair_full_bin.h"
-#include "npair_full_bin_atomonly.h"
-#include "npair_full_bin_ghost.h"
-#include "npair_full_multi.h"
-#include "npair_full_multi_old.h"
-#include "npair_full_nsq.h"
-#include "npair_full_nsq_ghost.h"
-#include "npair_half_bin_atomonly_newton.h"
-#include "npair_half_bin_newtoff.h"
-#include "npair_half_bin_newtoff_ghost.h"
-#include "npair_half_bin_newton.h"
-#include "npair_half_bin_newton_tri.h"
-#include "npair_half_multi_newtoff.h"
-#include "npair_half_multi_newton.h"
-#include "npair_half_multi_newton_tri.h"
-#include "npair_half_multi_old_newtoff.h"
-#include "npair_half_multi_old_newton.h"
-#include "npair_half_multi_old_newton_tri.h"
-#include "npair_half_nsq_newtoff.h"
-#include "npair_half_nsq_newtoff_ghost.h"
-#include "npair_half_nsq_newton.h"
-#include "npair_half_respa_bin_newtoff.h"
-#include "npair_half_respa_bin_newton.h"
-#include "npair_half_respa_bin_newton_tri.h"
-#include "npair_half_respa_nsq_newtoff.h"
-#include "npair_half_respa_nsq_newton.h"
-#include "npair_half_size_bin_newtoff.h"
-#include "npair_half_size_bin_newton.h"
-#include "npair_half_size_bin_newton_tri.h"
-#include "npair_half_size_multi_newtoff.h"
-#include "npair_half_size_multi_newton.h"
-#include "npair_half_size_multi_newton_tri.h"
-#include "npair_half_size_multi_old_newtoff.h"
-#include "npair_half_size_multi_old_newton.h"
-#include "npair_half_size_multi_old_newton_tri.h"
-#include "npair_half_size_nsq_newtoff.h"
-#include "npair_half_size_nsq_newton.h"
-#include "npair_halffull_newtoff.h"
-#include "npair_halffull_newton.h"
-#include "npair_skip.h"
-#include "npair_skip_respa.h"
-#include "npair_skip_size.h"
-#include "npair_skip_size_off2on.h"
-#include "npair_skip_size_off2on_oneside.h"
diff --git a/doc/styles/style_npair.h.tmp b/doc/styles/style_npair.h.tmp
deleted file mode 100644
index 19a22cc0b1..0000000000
--- a/doc/styles/style_npair.h.tmp
+++ /dev/null
@@ -1,45 +0,0 @@
-#include "npair_copy.h"
-#include "npair_full_bin.h"
-#include "npair_full_bin_atomonly.h"
-#include "npair_full_bin_ghost.h"
-#include "npair_full_multi.h"
-#include "npair_full_multi_old.h"
-#include "npair_full_nsq.h"
-#include "npair_full_nsq_ghost.h"
-#include "npair_half_bin_atomonly_newton.h"
-#include "npair_half_bin_newtoff.h"
-#include "npair_half_bin_newtoff_ghost.h"
-#include "npair_half_bin_newton.h"
-#include "npair_half_bin_newton_tri.h"
-#include "npair_half_multi_newtoff.h"
-#include "npair_half_multi_newton.h"
-#include "npair_half_multi_newton_tri.h"
-#include "npair_half_multi_old_newtoff.h"
-#include "npair_half_multi_old_newton.h"
-#include "npair_half_multi_old_newton_tri.h"
-#include "npair_half_nsq_newtoff.h"
-#include "npair_half_nsq_newtoff_ghost.h"
-#include "npair_half_nsq_newton.h"
-#include "npair_half_respa_bin_newtoff.h"
-#include "npair_half_respa_bin_newton.h"
-#include "npair_half_respa_bin_newton_tri.h"
-#include "npair_half_respa_nsq_newtoff.h"
-#include "npair_half_respa_nsq_newton.h"
-#include "npair_half_size_bin_newtoff.h"
-#include "npair_half_size_bin_newton.h"
-#include "npair_half_size_bin_newton_tri.h"
-#include "npair_half_size_multi_newtoff.h"
-#include "npair_half_size_multi_newton.h"
-#include "npair_half_size_multi_newton_tri.h"
-#include "npair_half_size_multi_old_newtoff.h"
-#include "npair_half_size_multi_old_newton.h"
-#include "npair_half_size_multi_old_newton_tri.h"
-#include "npair_half_size_nsq_newtoff.h"
-#include "npair_half_size_nsq_newton.h"
-#include "npair_halffull_newtoff.h"
-#include "npair_halffull_newton.h"
-#include "npair_skip.h"
-#include "npair_skip_respa.h"
-#include "npair_skip_size.h"
-#include "npair_skip_size_off2on.h"
-#include "npair_skip_size_off2on_oneside.h"
diff --git a/doc/styles/style_nstencil.h b/doc/styles/style_nstencil.h
deleted file mode 100644
index b8503e0c23..0000000000
--- a/doc/styles/style_nstencil.h
+++ /dev/null
@@ -1,20 +0,0 @@
-#include "nstencil_full_bin_2d.h"
-#include "nstencil_full_bin_3d.h"
-#include "nstencil_full_ghost_bin_2d.h"
-#include "nstencil_full_ghost_bin_3d.h"
-#include "nstencil_full_multi_2d.h"
-#include "nstencil_full_multi_3d.h"
-#include "nstencil_full_multi_old_2d.h"
-#include "nstencil_full_multi_old_3d.h"
-#include "nstencil_half_bin_2d.h"
-#include "nstencil_half_bin_2d_tri.h"
-#include "nstencil_half_bin_3d.h"
-#include "nstencil_half_bin_3d_tri.h"
-#include "nstencil_half_multi_2d.h"
-#include "nstencil_half_multi_2d_tri.h"
-#include "nstencil_half_multi_3d.h"
-#include "nstencil_half_multi_3d_tri.h"
-#include "nstencil_half_multi_old_2d.h"
-#include "nstencil_half_multi_old_2d_tri.h"
-#include "nstencil_half_multi_old_3d.h"
-#include "nstencil_half_multi_old_3d_tri.h"
diff --git a/doc/styles/style_nstencil.h.tmp b/doc/styles/style_nstencil.h.tmp
deleted file mode 100644
index b8503e0c23..0000000000
--- a/doc/styles/style_nstencil.h.tmp
+++ /dev/null
@@ -1,20 +0,0 @@
-#include "nstencil_full_bin_2d.h"
-#include "nstencil_full_bin_3d.h"
-#include "nstencil_full_ghost_bin_2d.h"
-#include "nstencil_full_ghost_bin_3d.h"
-#include "nstencil_full_multi_2d.h"
-#include "nstencil_full_multi_3d.h"
-#include "nstencil_full_multi_old_2d.h"
-#include "nstencil_full_multi_old_3d.h"
-#include "nstencil_half_bin_2d.h"
-#include "nstencil_half_bin_2d_tri.h"
-#include "nstencil_half_bin_3d.h"
-#include "nstencil_half_bin_3d_tri.h"
-#include "nstencil_half_multi_2d.h"
-#include "nstencil_half_multi_2d_tri.h"
-#include "nstencil_half_multi_3d.h"
-#include "nstencil_half_multi_3d_tri.h"
-#include "nstencil_half_multi_old_2d.h"
-#include "nstencil_half_multi_old_2d_tri.h"
-#include "nstencil_half_multi_old_3d.h"
-#include "nstencil_half_multi_old_3d_tri.h"
diff --git a/doc/styles/style_ntopo.h b/doc/styles/style_ntopo.h
deleted file mode 100644
index d97f8f4773..0000000000
--- a/doc/styles/style_ntopo.h
+++ /dev/null
@@ -1,12 +0,0 @@
-#include "ntopo_angle_all.h"
-#include "ntopo_angle_partial.h"
-#include "ntopo_angle_template.h"
-#include "ntopo_bond_all.h"
-#include "ntopo_bond_partial.h"
-#include "ntopo_bond_template.h"
-#include "ntopo_dihedral_all.h"
-#include "ntopo_dihedral_partial.h"
-#include "ntopo_dihedral_template.h"
-#include "ntopo_improper_all.h"
-#include "ntopo_improper_partial.h"
-#include "ntopo_improper_template.h"
diff --git a/doc/styles/style_ntopo.h.tmp b/doc/styles/style_ntopo.h.tmp
deleted file mode 100644
index d97f8f4773..0000000000
--- a/doc/styles/style_ntopo.h.tmp
+++ /dev/null
@@ -1,12 +0,0 @@
-#include "ntopo_angle_all.h"
-#include "ntopo_angle_partial.h"
-#include "ntopo_angle_template.h"
-#include "ntopo_bond_all.h"
-#include "ntopo_bond_partial.h"
-#include "ntopo_bond_template.h"
-#include "ntopo_dihedral_all.h"
-#include "ntopo_dihedral_partial.h"
-#include "ntopo_dihedral_template.h"
-#include "ntopo_improper_all.h"
-#include "ntopo_improper_partial.h"
-#include "ntopo_improper_template.h"
diff --git a/doc/styles/style_pair.h b/doc/styles/style_pair.h
deleted file mode 100644
index 684f688e03..0000000000
--- a/doc/styles/style_pair.h
+++ /dev/null
@@ -1,82 +0,0 @@
-#include "pair_adp.h"
-#include "pair_airebo.h"
-#include "pair_airebo_morse.h"
-#include "pair_atm.h"
-#include "pair_bop.h"
-#include "pair_born.h"
-#include "pair_born_coul_long.h"
-#include "pair_born_coul_msm.h"
-#include "pair_buck.h"
-#include "pair_buck_coul_cut.h"
-#include "pair_buck_coul_long.h"
-#include "pair_buck_coul_msm.h"
-#include "pair_buck_long_coul_long.h"
-#include "pair_comb.h"
-#include "pair_comb3.h"
-#include "pair_coul_cut.h"
-#include "pair_coul_debye.h"
-#include "pair_coul_dsf.h"
-#include "pair_coul_long.h"
-#include "pair_coul_msm.h"
-#include "pair_coul_streitz.h"
-#include "pair_coul_wolf.h"
-#include "pair_deprecated.h"
-#include "pair_eam.h"
-#include "pair_eam_alloy.h"
-#include "pair_eam_cd.h"
-#include "pair_eam_fs.h"
-#include "pair_eam_he.h"
-#include "pair_edip.h"
-#include "pair_edip_multi.h"
-#include "pair_eim.h"
-#include "pair_extep.h"
-#include "pair_gw.h"
-#include "pair_gw_zbl.h"
-#include "pair_hbond_dreiding_lj.h"
-#include "pair_hbond_dreiding_morse.h"
-#include "pair_hybrid.h"
-#include "pair_hybrid_overlay.h"
-#include "pair_hybrid_scaled.h"
-#include "pair_lcbop.h"
-#include "pair_lj_charmm_coul_charmm.h"
-#include "pair_lj_charmm_coul_charmm_implicit.h"
-#include "pair_lj_charmm_coul_long.h"
-#include "pair_lj_charmm_coul_msm.h"
-#include "pair_lj_charmmfsw_coul_charmmfsh.h"
-#include "pair_lj_charmmfsw_coul_long.h"
-#include "pair_lj_cut.h"
-#include "pair_lj_cut_coul_cut.h"
-#include "pair_lj_cut_coul_long.h"
-#include "pair_lj_cut_coul_msm.h"
-#include "pair_lj_cut_tip4p_cut.h"
-#include "pair_lj_cut_tip4p_long.h"
-#include "pair_lj_expand.h"
-#include "pair_lj_long_coul_long.h"
-#include "pair_lj_long_tip4p_long.h"
-#include "pair_local_density.h"
-#include "pair_meam_spline.h"
-#include "pair_meam_sw_spline.h"
-#include "pair_morse.h"
-#include "pair_nb3b_harmonic.h"
-#include "pair_polymorphic.h"
-#include "pair_python.h"
-#include "pair_rebo.h"
-#include "pair_snap.h"
-#include "pair_soft.h"
-#include "pair_sw.h"
-#include "pair_sw_angle_table.h"
-#include "pair_sw_mod.h"
-#include "pair_table.h"
-#include "pair_tersoff.h"
-#include "pair_tersoff_mod.h"
-#include "pair_tersoff_mod_c.h"
-#include "pair_tersoff_table.h"
-#include "pair_tersoff_zbl.h"
-#include "pair_threebody_table.h"
-#include "pair_tip4p_cut.h"
-#include "pair_tip4p_long.h"
-#include "pair_vashishta.h"
-#include "pair_vashishta_table.h"
-#include "pair_yukawa.h"
-#include "pair_zbl.h"
-#include "pair_zero.h"
diff --git a/doc/styles/style_pair.h.tmp b/doc/styles/style_pair.h.tmp
deleted file mode 100644
index 684f688e03..0000000000
--- a/doc/styles/style_pair.h.tmp
+++ /dev/null
@@ -1,82 +0,0 @@
-#include "pair_adp.h"
-#include "pair_airebo.h"
-#include "pair_airebo_morse.h"
-#include "pair_atm.h"
-#include "pair_bop.h"
-#include "pair_born.h"
-#include "pair_born_coul_long.h"
-#include "pair_born_coul_msm.h"
-#include "pair_buck.h"
-#include "pair_buck_coul_cut.h"
-#include "pair_buck_coul_long.h"
-#include "pair_buck_coul_msm.h"
-#include "pair_buck_long_coul_long.h"
-#include "pair_comb.h"
-#include "pair_comb3.h"
-#include "pair_coul_cut.h"
-#include "pair_coul_debye.h"
-#include "pair_coul_dsf.h"
-#include "pair_coul_long.h"
-#include "pair_coul_msm.h"
-#include "pair_coul_streitz.h"
-#include "pair_coul_wolf.h"
-#include "pair_deprecated.h"
-#include "pair_eam.h"
-#include "pair_eam_alloy.h"
-#include "pair_eam_cd.h"
-#include "pair_eam_fs.h"
-#include "pair_eam_he.h"
-#include "pair_edip.h"
-#include "pair_edip_multi.h"
-#include "pair_eim.h"
-#include "pair_extep.h"
-#include "pair_gw.h"
-#include "pair_gw_zbl.h"
-#include "pair_hbond_dreiding_lj.h"
-#include "pair_hbond_dreiding_morse.h"
-#include "pair_hybrid.h"
-#include "pair_hybrid_overlay.h"
-#include "pair_hybrid_scaled.h"
-#include "pair_lcbop.h"
-#include "pair_lj_charmm_coul_charmm.h"
-#include "pair_lj_charmm_coul_charmm_implicit.h"
-#include "pair_lj_charmm_coul_long.h"
-#include "pair_lj_charmm_coul_msm.h"
-#include "pair_lj_charmmfsw_coul_charmmfsh.h"
-#include "pair_lj_charmmfsw_coul_long.h"
-#include "pair_lj_cut.h"
-#include "pair_lj_cut_coul_cut.h"
-#include "pair_lj_cut_coul_long.h"
-#include "pair_lj_cut_coul_msm.h"
-#include "pair_lj_cut_tip4p_cut.h"
-#include "pair_lj_cut_tip4p_long.h"
-#include "pair_lj_expand.h"
-#include "pair_lj_long_coul_long.h"
-#include "pair_lj_long_tip4p_long.h"
-#include "pair_local_density.h"
-#include "pair_meam_spline.h"
-#include "pair_meam_sw_spline.h"
-#include "pair_morse.h"
-#include "pair_nb3b_harmonic.h"
-#include "pair_polymorphic.h"
-#include "pair_python.h"
-#include "pair_rebo.h"
-#include "pair_snap.h"
-#include "pair_soft.h"
-#include "pair_sw.h"
-#include "pair_sw_angle_table.h"
-#include "pair_sw_mod.h"
-#include "pair_table.h"
-#include "pair_tersoff.h"
-#include "pair_tersoff_mod.h"
-#include "pair_tersoff_mod_c.h"
-#include "pair_tersoff_table.h"
-#include "pair_tersoff_zbl.h"
-#include "pair_threebody_table.h"
-#include "pair_tip4p_cut.h"
-#include "pair_tip4p_long.h"
-#include "pair_vashishta.h"
-#include "pair_vashishta_table.h"
-#include "pair_yukawa.h"
-#include "pair_zbl.h"
-#include "pair_zero.h"
diff --git a/doc/styles/style_reader.h b/doc/styles/style_reader.h
deleted file mode 100644
index b66e91fe58..0000000000
--- a/doc/styles/style_reader.h
+++ /dev/null
@@ -1,2 +0,0 @@
-#include "reader_native.h"
-#include "reader_xyz.h"
diff --git a/doc/styles/style_reader.h.tmp b/doc/styles/style_reader.h.tmp
deleted file mode 100644
index b66e91fe58..0000000000
--- a/doc/styles/style_reader.h.tmp
+++ /dev/null
@@ -1,2 +0,0 @@
-#include "reader_native.h"
-#include "reader_xyz.h"
diff --git a/doc/styles/style_region.h b/doc/styles/style_region.h
deleted file mode 100644
index 9f077a0ecf..0000000000
--- a/doc/styles/style_region.h
+++ /dev/null
@@ -1,10 +0,0 @@
-#include "region_block.h"
-#include "region_cone.h"
-#include "region_cylinder.h"
-#include "region_deprecated.h"
-#include "region_ellipsoid.h"
-#include "region_intersect.h"
-#include "region_plane.h"
-#include "region_prism.h"
-#include "region_sphere.h"
-#include "region_union.h"
diff --git a/doc/styles/style_region.h.tmp b/doc/styles/style_region.h.tmp
deleted file mode 100644
index 9f077a0ecf..0000000000
--- a/doc/styles/style_region.h.tmp
+++ /dev/null
@@ -1,10 +0,0 @@
-#include "region_block.h"
-#include "region_cone.h"
-#include "region_cylinder.h"
-#include "region_deprecated.h"
-#include "region_ellipsoid.h"
-#include "region_intersect.h"
-#include "region_plane.h"
-#include "region_prism.h"
-#include "region_sphere.h"
-#include "region_union.h"
diff --git a/doc/utils/check-packages.py b/doc/utils/check-packages.py
old mode 100755
new mode 100644
diff --git a/doc/utils/check-styles.py b/doc/utils/check-styles.py
old mode 100755
new mode 100644
diff --git a/doc/utils/converters/lammpsdoc/doc_anchor_check.py b/doc/utils/converters/lammpsdoc/doc_anchor_check.py
old mode 100755
new mode 100644
diff --git a/doc/utils/converters/lammpsdoc/rst_anchor_check.py b/doc/utils/converters/lammpsdoc/rst_anchor_check.py
old mode 100755
new mode 100644
diff --git a/doc/utils/converters/lammpsdoc/txt2html.py b/doc/utils/converters/lammpsdoc/txt2html.py
old mode 100755
new mode 100644
diff --git a/doc/utils/converters/lammpsdoc/txt2rst.py b/doc/utils/converters/lammpsdoc/txt2rst.py
old mode 100755
new mode 100644
diff --git a/doc/utils/fixup_headers.py b/doc/utils/fixup_headers.py
old mode 100755
new mode 100644