From 2e1da2958da1cf362a2185ed51db8902607a1218 Mon Sep 17 00:00:00 2001 From: Axel Kohlmeyer Date: Fri, 5 Apr 2019 11:04:11 -0400 Subject: [PATCH] resolve toctree and paper anchor issues --- doc/src/Howto.txt | 2 +- doc/src/Howto_tip3p.txt | 6 +++++- 2 files changed, 6 insertions(+), 2 deletions(-) diff --git a/doc/src/Howto.txt b/doc/src/Howto.txt index 36f6be7194..0df417af75 100644 --- a/doc/src/Howto.txt +++ b/doc/src/Howto.txt @@ -148,7 +148,7 @@ END_RST --> -"CHARMM, AMBER, and DREIDING force fields"_Howto_bioFF.html +"CHARMM, AMBER, COMPASS, and DREIDING force fields"_Howto_bioFF.html "TIP3P water model"_Howto_tip3p.html "TIP4P water model"_Howto_tip4p.html "SPC water model"_Howto_spc.html :all(b) diff --git a/doc/src/Howto_tip3p.txt b/doc/src/Howto_tip3p.txt index 942b42aea1..a34577c5e1 100644 --- a/doc/src/Howto_tip3p.txt +++ b/doc/src/Howto_tip3p.txt @@ -10,7 +10,7 @@ Documentation"_ld - "LAMMPS Commands"_lc :c TIP3P water model :h3 The TIP3P water model as implemented in CHARMM -"(MacKerell)"_#howto-MacKerell specifies a 3-site rigid water molecule with +"(MacKerell)"_#howto-tip3p specifies a 3-site rigid water molecule with charges and Lennard-Jones parameters assigned to each of the 3 atoms. In LAMMPS the "fix shake"_fix_shake.html command can be used to hold the two O-H bonds and the H-O-H angle rigid. A bond style of @@ -60,6 +60,10 @@ models"_http://en.wikipedia.org/wiki/Water_model. :line +:link(howto-tip3p) +[(MacKerell)] MacKerell, Bashford, Bellott, Dunbrack, Evanseck, Field, +Fischer, Gao, Guo, Ha, et al, J Phys Chem, 102, 3586 (1998). + :link(Jorgensen1) [(Jorgensen)] Jorgensen, Chandrasekhar, Madura, Impey, Klein, J Chem Phys, 79, 926 (1983).