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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@1294 f3b2605a-c512-4ea7-a41b-209d697bcdaa

This commit is contained in:
sjplimp 2008-01-04 00:37:21 +00:00
parent b06573d3fb
commit 2293c190b5
18 changed files with 57 additions and 55 deletions
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4
doc/fix_modify.html
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@ -67,8 +67,8 @@ fix-ID of the appropriate fix.
</P>
<P><B>Related commands:</B>
</P>
<P><A HREF = "fix.html">fix</A>, <A HREF = "temperature.html">temperature</A>,
<A HREF = "thermo_style.html">thermo_style</A>
<P><A HREF = "fix.html">fix</A>, <A HREF = "compute_temp.html">compute temp</A>, <A HREF = "compute_pressure.html">compute
pressure</A>, <A HREF = "thermo_style.html">thermo_style</A>
</P>
<P><B>Default:</B>
</P>

4
doc/fix_modify.txt
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@ -60,8 +60,8 @@ fix-ID of the appropriate fix.
[Related commands:]
"fix"_fix.html, "temperature"_temperature.html,
"thermo_style"_thermo_style.html
"fix"_fix.html, "compute temp"_compute_temp.html, "compute
pressure"_compute_pressure.html, "thermo_style"_thermo_style.html
[Default:]

8
doc/fix_nph.html
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@ -131,11 +131,11 @@ as if these commands had been issued:
</PRE>
<PRE>compute fix-ID_press group-ID pressure fix-ID_temp
</PRE>
<P>See the <A HREF = "compute_temp.html">compute temp</A> and <A HREF = "compute_pressure.html<A HREF = "temp"<A HREF = "press"">>>compute
<P>See the <A HREF = "compute_temp.html">compute temp</A> and <A HREF = "compute_pressure.html">compute
pressure</A> commands for details. Note that the
IDs of the new computes are the fix-ID with </A> or </A>
appended and the group for the new computes is the same as the fix
group.
IDs of the new computes are the fix-ID + underscore + "temp" or fix_ID
+ underscore + "press", and the group for the new computes is the same
as the fix group.
</P>
<P>Note that these are NOT the computes used by thermodynamic output (see
the <A HREF = "thermo_style.html">thermo_style</A> command) with ID = <I>thermo_temp</I>

6
doc/fix_nph.txt
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@ -123,9 +123,9 @@ compute fix-ID_press group-ID pressure fix-ID_temp :pre
See the "compute temp"_compute_temp.html and "compute
pressure"_compute_pressure.html commands for details. Note that the
IDs of the new computes are the fix-ID with "_temp" or "_press"
appended and the group for the new computes is the same as the fix
group.
IDs of the new computes are the fix-ID + underscore + "temp" or fix_ID
+ underscore + "press", and the group for the new computes is the same
as the fix group.
Note that these are NOT the computes used by thermodynamic output (see
the "thermo_style"_thermo_style.html command) with ID = {thermo_temp}

8
doc/fix_npt.html
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@ -135,11 +135,11 @@ as if these commands had been issued:
<PRE>compute fix-ID_temp group-ID temp
compute fix-ID_press group-ID pressure fix-ID_temp
</PRE>
<P>See the <A HREF = "compute_temp.html">compute temp</A> and <A HREF = "compute_pressure.html<A HREF = "temp"<A HREF = "press"">>>compute
<P>See the <A HREF = "compute_temp.html">compute temp</A> and <A HREF = "compute_pressure.html">compute
pressure</A> commands for details. Note that the
IDs of the new computes are the fix-ID with </A> or </A>
appended and the group for the new computes is the same as the fix
group.
IDs of the new computes are the fix-ID + underscore + "temp" or fix_ID
+ underscore + "press", and the group for the new computes is the same
as the fix group.
</P>
<P>Note that these are NOT the computes used by thermodynamic output (see
the <A HREF = "thermo_style.html">thermo_style</A> command) with ID = <I>thermo_temp</I>

6
doc/fix_npt.txt
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@ -126,9 +126,9 @@ compute fix-ID_press group-ID pressure fix-ID_temp :pre
See the "compute temp"_compute_temp.html and "compute
pressure"_compute_pressure.html commands for details. Note that the
IDs of the new computes are the fix-ID with "_temp" or "_press"
appended and the group for the new computes is the same as the fix
group.
IDs of the new computes are the fix-ID + underscore + "temp" or fix_ID
+ underscore + "press", and the group for the new computes is the same
as the fix group.
Note that these are NOT the computes used by thermodynamic output (see
the "thermo_style"_thermo_style.html command) with ID = {thermo_temp}

8
doc/fix_npt_asphere.html
View File

@ -134,11 +134,11 @@ this, the fix creates its own computes of style "temp/asphere" and
<PRE>compute fix-ID_temp group-ID temp/asphere
compute fix-ID_press group-ID pressure fix-ID_temp
</PRE>
<P>See the <A HREF = "compute_temp_asphere.html">compute temp/asphere</A> and <A HREF = "compute_pressure.html<A HREF = "temp"<A HREF = "press"">>>compute
<P>See the <A HREF = "compute_temp_asphere.html">compute temp/asphere</A> and <A HREF = "compute_pressure.html">compute
pressure</A> commands for details. Note that the
IDs of the new computes are the fix-ID with </A> or </A>
appended and the group for the new computes is the same as the fix
group.
IDs of the new computes are the fix-ID + underscore + "temp" or fix_ID
+ underscore + "press", and the group for the new computes is the same
as the fix group.
</P>
<P>Note that these are NOT the computes used by thermodynamic output (see
the <A HREF = "thermo_style.html">thermo_style</A> command) with ID = <I>thermo_temp</I>

6
doc/fix_npt_asphere.txt
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@ -125,9 +125,9 @@ compute fix-ID_press group-ID pressure fix-ID_temp :pre
See the "compute temp/asphere"_compute_temp_asphere.html and "compute
pressure"_compute_pressure.html commands for details. Note that the
IDs of the new computes are the fix-ID with "_temp" or "_press"
appended and the group for the new computes is the same as the fix
group.
IDs of the new computes are the fix-ID + underscore + "temp" or fix_ID
+ underscore + "press", and the group for the new computes is the same
as the fix group.
Note that these are NOT the computes used by thermodynamic output (see
the "thermo_style"_thermo_style.html command) with ID = {thermo_temp}

8
doc/fix_nvt.html
View File

@ -66,9 +66,9 @@ issued:
</P>
<PRE>compute fix-ID_temp group-ID temp
</PRE>
<P>See the <A HREF = "compute_temp.html<A HREF = "temp"">>compute temp</A> command for details. Note
that the ID of the new compute is the fix-ID with </A> appended and
the group for the new compute is the same as the fix group.
<P>See the <A HREF = "compute_temp.html">compute temp</A> command for details. Note
that the ID of the new compute is the fix-ID + underscore + "temp",
and the group for the new compute is the same as the fix group.
</P>
<P>Note that this is NOT the compute used by thermodynamic output (see
the <A HREF = "thermo_style.html">thermo_style</A> command) with ID = <I>thermo_temp</I>.
@ -120,7 +120,7 @@ the Nose/Hoover formulation.
</P>
<P><A HREF = "fix_nve.html">fix nve</A>, <A HREF = "fix_npt.html">fix npt</A>, <A HREF = "fix_temp_rescale.html">fix
temp/rescale</A>, <A HREF = "fix_langevin.html">fix langevin</A>,
<A HREF = "fix_modify.html">fix_modify</A>, <A HREF = "temperature.html">temperature</A>
<A HREF = "fix_modify.html">fix_modify</A>, <A HREF = "compute_temp.html">compute temp</A>
</P>
<P><B>Default:</B>
</P>

6
doc/fix_nvt.txt
View File

@ -58,8 +58,8 @@ issued:
compute fix-ID_temp group-ID temp :pre
See the "compute temp"_compute_temp.html command for details. Note
that the ID of the new compute is the fix-ID with "_temp" appended and
the group for the new compute is the same as the fix group.
that the ID of the new compute is the fix-ID + underscore + "temp",
and the group for the new compute is the same as the fix group.
Note that this is NOT the compute used by thermodynamic output (see
the "thermo_style"_thermo_style.html command) with ID = {thermo_temp}.
@ -111,7 +111,7 @@ the Nose/Hoover formulation.
"fix nve"_fix_nve.html, "fix npt"_fix_npt.html, "fix
temp/rescale"_fix_temp_rescale.html, "fix langevin"_fix_langevin.html,
"fix_modify"_fix_modify.html, "temperature"_temperature.html
"fix_modify"_fix_modify.html, "compute temp"_compute_temp.html
[Default:]

8
doc/fix_nvt_asphere.html
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@ -67,10 +67,10 @@ had been issued:
</P>
<PRE>compute fix-ID_temp group-ID temp/asphere
</PRE>
<P>See the <A HREF = "compute_temp_asphere.html<A HREF = "temp"">>compute temp/asphere</A> command for
details. Note that the ID of the new compute is the fix-ID with
</A> appended and the group for the new compute is the same as the
fix group.
<P>See the <A HREF = "compute_temp_asphere.html">compute temp/asphere</A> command for
details. Note that the ID of the new compute is the fix-ID +
underscore + "temp", and the group for the new compute is the same as
the fix group.
</P>
<P>Note that this is NOT the compute used by thermodynamic output (see
the <A HREF = "thermo_style.html">thermo_style</A> command) with ID = <I>thermo_temp</I>.

6
doc/fix_nvt_asphere.txt
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@ -59,9 +59,9 @@ had been issued:
compute fix-ID_temp group-ID temp/asphere :pre
See the "compute temp/asphere"_compute_temp_asphere.html command for
details. Note that the ID of the new compute is the fix-ID with
"_temp" appended and the group for the new compute is the same as the
fix group.
details. Note that the ID of the new compute is the fix-ID +
underscore + "temp", and the group for the new compute is the same as
the fix group.
Note that this is NOT the compute used by thermodynamic output (see
the "thermo_style"_thermo_style.html command) with ID = {thermo_temp}.

10
doc/fix_nvt_sllod.html
View File

@ -93,10 +93,10 @@ been issued:
</P>
<PRE>compute fix-ID_temp group-ID temp/deform
</PRE>
<P>See the <A HREF = "compute_temp_deform.html<A HREF = "temp"">>compute temp/deform</A> command for
details. Note that the ID of the new compute is the fix-ID with
</A> appended and the group for the new compute is the same as the
fix group.
<P>See the <A HREF = "compute_temp_deform.html">compute temp/deform</A> command for
details. Note that the ID of the new compute is the fix-ID +
underscore + "temp", and the group for the new compute is the same as
the fix group.
</P>
<P>Note that this is NOT the compute used by thermodynamic output (see
the <A HREF = "thermo_style.html">thermo_style</A> command) with ID = <I>thermo_temp</I>.
@ -147,7 +147,7 @@ the Nose/Hoover formulation.
<P><A HREF = "fix_nve.html">fix nve</A>, <A HREF = "fix_npt.html">fix npt</A>, <A HREF = "fix_npt.html">fix
npt</A>, <A HREF = "fix_temp_rescale.html">fix temp/rescale</A>, <A HREF = "fix_langevin.html">fix
langevin</A>, <A HREF = "fix_modify.html">fix_modify</A>,
<A HREF = "temperature.html">temperature</A>
<A HREF = "compute_temp.html">compute temp</A>
</P>
<P><B>Default:</B>
</P>

8
doc/fix_nvt_sllod.txt
View File

@ -85,9 +85,9 @@ been issued:
compute fix-ID_temp group-ID temp/deform :pre
See the "compute temp/deform"_compute_temp_deform.html command for
details. Note that the ID of the new compute is the fix-ID with
"_temp" appended and the group for the new compute is the same as the
fix group.
details. Note that the ID of the new compute is the fix-ID +
underscore + "temp", and the group for the new compute is the same as
the fix group.
Note that this is NOT the compute used by thermodynamic output (see
the "thermo_style"_thermo_style.html command) with ID = {thermo_temp}.
@ -138,7 +138,7 @@ the Nose/Hoover formulation.
"fix nve"_fix_nve.html, "fix npt"_fix_npt.html, "fix
npt"_fix_npt.html, "fix temp/rescale"_fix_temp_rescale.html, "fix
langevin"_fix_langevin.html, "fix_modify"_fix_modify.html,
"temperature"_temperature.html
"compute temp"_compute_temp.html
[Default:]

6
doc/fix_temp_rescale.html
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@ -78,10 +78,10 @@ compute fix-ID_temp group-ID temp/partial xflag yflag zflag
<P>Which is used depends on whether the <I>region</I> or <I>partial</I> keywords
were specified with the fix. See the <A HREF = "compute_temp.html">compute
temp</A>, <A HREF = "compute_temp_region.html">compute
temp/region</A>, and <A HREF = "compute_temp_partial.html<A HREF = "temp"">>compute
temp/region</A>, and <A HREF = "compute_temp_partial.html">compute
temp/partial</A> commands for details. Note
that the ID of the new compute is the fix-ID with </A> appended and
the group for the new compute is the same as the fix group.
that the ID of the new compute is the fix-ID + underscore + "temp",
and the group for the new compute is the same as the fix group.
</P>
<P>Note that this is NOT the compute used by thermodynamic output (see
the <A HREF = "thermo_style.html">thermo_style</A> command) with ID = <I>thermo_temp</I>.

4
doc/fix_temp_rescale.txt
View File

@ -76,8 +76,8 @@ were specified with the fix. See the "compute
temp"_compute_temp.html, "compute
temp/region"_compute_temp_region.html, and "compute
temp/partial"_compute_temp_partial.html commands for details. Note
that the ID of the new compute is the fix-ID with "_temp" appended and
the group for the new compute is the same as the fix group.
that the ID of the new compute is the fix-ID + underscore + "temp",
and the group for the new compute is the same as the fix group.
Note that this is NOT the compute used by thermodynamic output (see
the "thermo_style"_thermo_style.html command) with ID = {thermo_temp}.

3
doc/thermo_style.html
View File

@ -294,7 +294,8 @@ information.
<P><B>Related commands:</B>
</P>
<P><A HREF = "thermo.html">thermo</A>, <A HREF = "thermo_modify.html">thermo_modify</A>,
<A HREF = "fix_modify.html">fix_modify</A>, <A HREF = "temperature.html">temperature</A>
<A HREF = "fix_modify.html">fix_modify</A>, <A HREF = "compute_temp.html">compute temp</A>,
<A HREF = "compute_pressure.html">compute pressure</A>
</P>
<P><B>Default:</B>
</P>

3
doc/thermo_style.txt
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@ -288,7 +288,8 @@ This command must come after the simulation box is defined by a
[Related commands:]
"thermo"_thermo.html, "thermo_modify"_thermo_modify.html,
"fix_modify"_fix_modify.html, "temperature"_temperature.html
"fix_modify"_fix_modify.html, "compute temp"_compute_temp.html,
"compute pressure"_compute_pressure.html
[Default:]