2016-09-27 00:23:53 +08:00
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LAMMPS Documentation
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2020-08-25 05:56:17 +08:00
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Depending on how you obtained LAMMPS and whether you have built
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the manual yourself, this directory has a varying number of
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sub-directories and files. Here is a list with descriptions:
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README this file
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src content files for LAMMPS documentation
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html HTML version of the LAMMPS manual (see html/Manual.html)
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utils utilities and settings for building the documentation
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Manual.pdf PDF version of entire manual
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LAMMPS.epub Manual in ePUB format
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LAMMPS.mobi Manual in MOBI (Kindle) format
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lammps.1 man page for the lammps command
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msi2lmp.1 man page for the msi2lmp command
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doctree temporary data
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docenv python virtual environment for generating the manual
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doxygen Doxygen configuration and output
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.gitignore list of files and folders to be ignored by git
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doxygen-warn.log logfile with warnings from running doxygen
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and:
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github-development-workflow.md notes on the LAMMPS development workflow
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include-file-conventions.md notes on LAMMPS' include file conventions
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documentation_conventions.md notes on writing documentation for LAMMPS
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2021-05-25 02:17:12 +08:00
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If you downloaded a LAMMPS tarball from www.lammps.org, then the html
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2020-08-25 05:56:17 +08:00
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folder and the PDF manual should be included. If you downloaded LAMMPS
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2021-05-25 02:17:12 +08:00
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from GitHub then you either need to build them.
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2016-09-27 00:23:53 +08:00
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2021-05-25 02:17:12 +08:00
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You can build the HTML and PDF files yourself, by typing "make html"
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2020-08-25 05:56:17 +08:00
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or by "make pdf", respectively. This requires various tools and files.
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Some of them have to be installed (more on that below). For the rest the
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build process will attempt to download and install into a python virtual
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environment and local folders.
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2016-09-22 05:22:57 +08:00
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----------------
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2020-08-25 05:56:17 +08:00
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Installing prerequisites for the documentation build
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2016-09-22 05:22:57 +08:00
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2020-08-25 05:56:17 +08:00
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To run the HTML documention build toolchain, python 3.x, doxygen, git,
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and virtualenv have to be installed. Also internet access is initially
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required to download external files and tools.
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2016-09-22 05:22:57 +08:00
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2020-08-25 05:56:17 +08:00
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Building the PDF format manual requires in addition a compatible LaTeX
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installation with support for PDFLaTeX and several add-on LaTeX packages
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installed. This includes:
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- amsmath
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- anysize
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2019-11-16 03:21:44 +08:00
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- babel
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2020-04-03 09:51:52 +08:00
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- capt-of
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2019-11-16 03:21:44 +08:00
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- cmap
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- fncychap
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2020-04-03 09:51:52 +08:00
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- framed
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2019-11-16 03:21:44 +08:00
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- geometry
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- hyperref
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- hypcap
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2020-04-03 09:51:52 +08:00
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- needspace
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2019-11-16 03:21:44 +08:00
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- times
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2020-04-03 02:31:47 +08:00
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- tabulary
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- upquote
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2020-04-03 09:51:52 +08:00
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- wrapfig
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2020-09-24 04:11:22 +08:00
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Also the latexmk script is required to run PDFLaTeX and related tools.
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2020-09-20 06:16:52 +08:00
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the required number of times to have self-consistent output and include
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updated bibliography and indices.
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2016-10-21 04:16:17 +08:00
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2020-08-25 05:56:17 +08:00
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Building the EPUB format requires LaTeX installation with the same packages
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as for the PDF format plus the 'dvipng' command to convert the embedded math
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into images. The MOBI format is generated from the EPUB format file by using
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the tool 'ebook-convert' from the 'calibre' e-book management software
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(https://calibre-ebook.com).
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----------------
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2016-10-21 04:16:17 +08:00
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More details this can be found in the manual itself. The online
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version is at: https://docs.lammps.org/Build_manual.html
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