2020-08-25 05:56:17 +08:00
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# Doxyfile 1.8.15 -*- makefile -*-
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DOXYFILE_ENCODING = UTF-8
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PROJECT_NAME = "LAMMPS Programmer's Guide"
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2022-04-27 16:46:18 +08:00
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PROJECT_NUMBER = "4 May 2022"
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2020-08-25 05:56:17 +08:00
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PROJECT_BRIEF = "Documentation of the LAMMPS library interface and Python wrapper"
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PROJECT_LOGO = lammps-logo.png
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BRIEF_MEMBER_DESC = YES
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# When enabled doxygen tries to link words that correspond to documented
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# classes, or namespaces to their corresponding documentation. Such a link can
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# be prevented in individual cases by putting a % sign in front of the word or
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# globally by setting AUTOLINK_SUPPORT to NO.
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# The default value is: YES.
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AUTOLINK_SUPPORT = YES
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# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
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# to include (a tag file for) the STL sources as input, then you should set this
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# tag to YES in order to let doxygen match functions declarations and
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# definitions whose arguments contain STL classes (e.g. func(std::string);
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# the optimal cache size from a speed point of view.
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LOOKUP_CACHE_SIZE = 2
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#---------------------------------------------------------------------------
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# Build related configuration options
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#---------------------------------------------------------------------------
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# If the EXTRACT_ALL tag is set to YES, doxygen will assume all entities in
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# documentation are documented, even if no documentation was available. Private
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# class members and static file members will be hidden unless the
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# EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES.
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# The default value is: NO.
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# If the EXTRACT_PRIVATE tag is set to YES, all private members of a class will
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# If the EXTRACT_STATIC tag is set to YES, all static members of a file will be
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# included in the documentation.
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EXTRACT_LOCAL_CLASSES = YES
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# If this flag is set to YES, the members of anonymous namespaces will be
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# If the HIDE_UNDOC_MEMBERS tag is set to YES, doxygen will hide all
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# If the HIDE_UNDOC_CLASSES tag is set to YES, doxygen will hide all
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# has no effect if EXTRACT_ALL is enabled.
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# The default value is: NO.
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# If the HIDE_IN_BODY_DOCS tag is set to YES, doxygen will hide any
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# The default value is: NO.
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# If the CASE_SENSE_NAMES tag is set to NO then doxygen will only generate file
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# The default value is: system dependent.
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# If the HIDE_SCOPE_NAMES tag is set to NO then doxygen will show members with
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# scope will be hidden.
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# The default value is: NO.
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HIDE_SCOPE_NAMES = YES
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# If the HIDE_COMPOUND_REFERENCE tag is set to NO (default) then doxygen will
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# YES the compound reference will be hidden.
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# The default value is: NO.
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HIDE_COMPOUND_REFERENCE= NO
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# If the SHOW_INCLUDE_FILES tag is set to YES then doxygen will put a list of
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SHOW_INCLUDE_FILES = NO
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# If the SHOW_GROUPED_MEMB_INC tag is set to YES then Doxygen will add for each
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# grouped member an include statement to the documentation, telling the reader
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# The default value is: NO.
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SHOW_GROUPED_MEMB_INC = NO
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# If the FORCE_LOCAL_INCLUDES tag is set to YES then doxygen will list include
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# files with double quotes in the documentation rather than with sharp brackets.
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# The default value is: NO.
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FORCE_LOCAL_INCLUDES = NO
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# If the INLINE_INFO tag is set to YES then a tag [inline] is inserted in the
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# documentation for inline members.
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# The default value is: YES.
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INLINE_INFO = YES
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# If the SORT_MEMBER_DOCS tag is set to YES then doxygen will sort the
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# (detailed) documentation of file and class members alphabetically by member
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# name. If set to NO, the members will appear in declaration order.
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# The default value is: YES.
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SORT_MEMBER_DOCS = NO
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# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the brief
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# descriptions of file, namespace and class members alphabetically by member
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# name. If set to NO, the members will appear in declaration order. Note that
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# this will also influence the order of the classes in the class list.
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# The default value is: NO.
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SORT_BRIEF_DOCS = NO
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# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the
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# (brief and detailed) documentation of class members so that constructors and
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# destructors are listed first. If set to NO the constructors will appear in the
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# respective orders defined by SORT_BRIEF_DOCS and SORT_MEMBER_DOCS.
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# Note: If SORT_BRIEF_DOCS is set to NO this option is ignored for sorting brief
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# member documentation.
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# Note: If SORT_MEMBER_DOCS is set to NO this option is ignored for sorting
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# detailed member documentation.
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SORT_MEMBERS_CTORS_1ST = NO
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# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the hierarchy
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# of group names into alphabetical order. If set to NO the group names will
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# appear in their defined order.
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# The default value is: NO.
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SORT_GROUP_NAMES = NO
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# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be sorted by
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# fully-qualified names, including namespaces. If set to NO, the class list will
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# be sorted only by class name, not including the namespace part.
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# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
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# Note: This option applies only to the class list, not to the alphabetical
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# list.
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# The default value is: NO.
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SORT_BY_SCOPE_NAME = NO
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# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to do proper
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# type resolution of all parameters of a function it will reject a match between
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# the prototype and the implementation of a member function even if there is
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# only one candidate or it is obvious which candidate to choose by doing a
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# simple string match. By disabling STRICT_PROTO_MATCHING doxygen will still
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# accept a match between prototype and implementation in such cases.
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# The default value is: NO.
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STRICT_PROTO_MATCHING = NO
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# The GENERATE_TODOLIST tag can be used to enable (YES) or disable (NO) the todo
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# list. This list is created by putting \todo commands in the documentation.
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# The default value is: YES.
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GENERATE_TODOLIST = YES
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# The GENERATE_TESTLIST tag can be used to enable (YES) or disable (NO) the test
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# list. This list is created by putting \test commands in the documentation.
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# The default value is: YES.
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GENERATE_TESTLIST = YES
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# The GENERATE_BUGLIST tag can be used to enable (YES) or disable (NO) the bug
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# list. This list is created by putting \bug commands in the documentation.
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# The default value is: YES.
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GENERATE_BUGLIST = YES
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# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or disable (NO)
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# the deprecated list. This list is created by putting \deprecated commands in
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# the documentation.
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# The default value is: YES.
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GENERATE_DEPRECATEDLIST= YES
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# The ENABLED_SECTIONS tag can be used to enable conditional documentation
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# sections, marked by \if <section_label> ... \endif and \cond <section_label>
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# ... \endcond blocks.
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ENABLED_SECTIONS =
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# The MAX_INITIALIZER_LINES tag determines the maximum number of lines that the
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# initial value of a variable or macro / define can have for it to appear in the
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# documentation. If the initializer consists of more lines than specified here
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# it will be hidden. Use a value of 0 to hide initializers completely. The
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# appearance of the value of individual variables and macros / defines can be
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# controlled using \showinitializer or \hideinitializer command in the
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# documentation regardless of this setting.
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# Minimum value: 0, maximum value: 10000, default value: 30.
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MAX_INITIALIZER_LINES = 30
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# Set the SHOW_USED_FILES tag to NO to disable the list of files generated at
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# the bottom of the documentation of classes and structs. If set to YES, the
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# list will mention the files that were used to generate the documentation.
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# The default value is: YES.
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SHOW_USED_FILES = YES
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# Set the SHOW_FILES tag to NO to disable the generation of the Files page. This
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# will remove the Files entry from the Quick Index and from the Folder Tree View
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# (if specified).
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# The default value is: YES.
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SHOW_FILES = NO
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# Set the SHOW_NAMESPACES tag to NO to disable the generation of the Namespaces
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# page. This will remove the Namespaces entry from the Quick Index and from the
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# Folder Tree View (if specified).
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# The default value is: YES.
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SHOW_NAMESPACES = YES
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# The FILE_VERSION_FILTER tag can be used to specify a program or script that
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# doxygen should invoke to get the current version for each file (typically from
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# the version control system). Doxygen will invoke the program by executing (via
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# popen()) the command command input-file, where command is the value of the
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# FILE_VERSION_FILTER tag, and input-file is the name of an input file provided
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# by doxygen. Whatever the program writes to standard output is used as the file
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# version. For an example see the documentation.
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FILE_VERSION_FILTER =
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# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
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# by doxygen. The layout file controls the global structure of the generated
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# output files in an output format independent way. To create the layout file
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# that represents doxygen's defaults, run doxygen with the -l option. You can
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# optionally specify a file name after the option, if omitted DoxygenLayout.xml
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# will be used as the name of the layout file.
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#
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# Note that if you run doxygen from a directory containing a file called
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# DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE
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# tag is left empty.
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LAYOUT_FILE =
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# The CITE_BIB_FILES tag can be used to specify one or more bib files containing
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# the reference definitions. This must be a list of .bib files. The .bib
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# extension is automatically appended if omitted. This requires the bibtex tool
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# to be installed. See also https://en.wikipedia.org/wiki/BibTeX for more info.
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# For LaTeX the style of the bibliography can be controlled using
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# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the
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# search path. See also \cite for info how to create references.
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CITE_BIB_FILES =
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#---------------------------------------------------------------------------
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# Configuration options related to warning and progress messages
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#---------------------------------------------------------------------------
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# The QUIET tag can be used to turn on/off the messages that are generated to
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# standard output by doxygen. If QUIET is set to YES this implies that the
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# messages are off.
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# The default value is: NO.
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QUIET = NO
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# The WARNINGS tag can be used to turn on/off the warning messages that are
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# generated to standard error (stderr) by doxygen. If WARNINGS is set to YES
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# this implies that the warnings are on.
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#
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# Tip: Turn warnings on while writing the documentation.
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# The default value is: YES.
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WARNINGS = YES
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# If the WARN_IF_UNDOCUMENTED tag is set to YES then doxygen will generate
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# warnings for undocumented members. If EXTRACT_ALL is set to YES then this flag
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# will automatically be disabled.
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# The default value is: YES.
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WARN_IF_UNDOCUMENTED = YES
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# If the WARN_IF_DOC_ERROR tag is set to YES, doxygen will generate warnings for
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# potential errors in the documentation, such as not documenting some parameters
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# in a documented function, or documenting parameters that don't exist or using
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# markup commands wrongly.
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# The default value is: YES.
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WARN_IF_DOC_ERROR = YES
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# This WARN_NO_PARAMDOC option can be enabled to get warnings for functions that
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# are documented, but have no documentation for their parameters or return
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# value. If set to NO, doxygen will only warn about wrong or incomplete
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# parameter documentation, but not about the absence of documentation. If
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# EXTRACT_ALL is set to YES then this flag will automatically be disabled.
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# The default value is: NO.
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WARN_NO_PARAMDOC = YES
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# If the WARN_AS_ERROR tag is set to YES then doxygen will immediately stop when
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# a warning is encountered.
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# The default value is: NO.
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WARN_AS_ERROR = NO
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# The WARN_FORMAT tag determines the format of the warning messages that doxygen
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# can produce. The string should contain the $file, $line, and $text tags, which
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# will be replaced by the file and line number from which the warning originated
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# and the warning text. Optionally the format may contain $version, which will
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# be replaced by the version of the file (if it could be obtained via
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# FILE_VERSION_FILTER)
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# The default value is: $file:$line: $text.
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WARN_FORMAT = "$file:$line: $text"
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# The WARN_LOGFILE tag can be used to specify a file to which warning and error
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# messages should be written. If left blank the output is written to standard
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# error (stderr).
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WARN_LOGFILE = "../doxygen-warn.log"
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#---------------------------------------------------------------------------
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# Configuration options related to the input files
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#---------------------------------------------------------------------------
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# The INPUT tag is used to specify the files and/or directories that contain
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# documented source files. You may enter file names like myfile.cpp or
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# directories like /usr/src/myproject. Separate the files or directories with
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# spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
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# Note: If this tag is empty the current directory is searched.
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2020-09-07 10:25:54 +08:00
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INPUT = @LAMMPS_SOURCE_DIR@/utils.cpp \
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@LAMMPS_SOURCE_DIR@/utils.h \
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@LAMMPS_SOURCE_DIR@/library.cpp \
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@LAMMPS_SOURCE_DIR@/library.h \
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@LAMMPS_SOURCE_DIR@/lammps.cpp \
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@LAMMPS_SOURCE_DIR@/lammps.h \
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2020-09-19 23:16:44 +08:00
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@LAMMPS_SOURCE_DIR@/pointers.h \
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2020-09-07 10:25:54 +08:00
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@LAMMPS_SOURCE_DIR@/lmptype.h \
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@LAMMPS_SOURCE_DIR@/atom.cpp \
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@LAMMPS_SOURCE_DIR@/atom.h \
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@LAMMPS_SOURCE_DIR@/input.cpp \
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@LAMMPS_SOURCE_DIR@/input.h \
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@LAMMPS_SOURCE_DIR@/tokenizer.cpp \
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@LAMMPS_SOURCE_DIR@/tokenizer.h \
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2021-02-01 12:06:59 +08:00
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@LAMMPS_SOURCE_DIR@/arg_info.cpp \
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@LAMMPS_SOURCE_DIR@/arg_info.h \
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2020-09-07 10:25:54 +08:00
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@LAMMPS_SOURCE_DIR@/text_file_reader.cpp \
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@LAMMPS_SOURCE_DIR@/text_file_reader.h \
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@LAMMPS_SOURCE_DIR@/potential_file_reader.cpp \
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@LAMMPS_SOURCE_DIR@/potential_file_reader.h \
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@LAMMPS_SOURCE_DIR@/my_page.cpp \
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@LAMMPS_SOURCE_DIR@/my_page.h \
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2020-09-09 03:13:16 +08:00
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@LAMMPS_SOURCE_DIR@/my_pool_chunk.cpp \
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2020-09-07 10:25:54 +08:00
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@LAMMPS_SOURCE_DIR@/my_pool_chunk.h \
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2020-09-10 05:56:28 +08:00
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@LAMMPS_SOURCE_DIR@/math_eigen.h \
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2021-10-03 03:50:58 +08:00
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@LAMMPS_SOURCE_DIR@/platform.h \
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@LAMMPS_SOURCE_DIR@/platform.cpp \
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2022-04-27 16:46:18 +08:00
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@LAMMPS_SOURCE_DIR@/math_special.h \
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@LAMMPS_SOURCE_DIR@/math_special.cpp \
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2020-08-25 05:56:17 +08:00
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# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
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# directories that are symbolic links (a Unix file system feature) are excluded
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# from the input.
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# The default value is: NO.
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EXCLUDE_SYMLINKS = YES
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#---------------------------------------------------------------------------
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# Configuration options related to output
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#---------------------------------------------------------------------------
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GENERATE_HTML = NO
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GENERATE_LATEX = NO
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GENERATE_XML = YES
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XML_OUTPUT = xml
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XML_PROGRAMLISTING = YES
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XML_NS_MEMB_FILE_SCOPE = NO
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#---------------------------------------------------------------------------
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# Configuration options related to the preprocessor
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#---------------------------------------------------------------------------
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# If the ENABLE_PREPROCESSING tag is set to YES, doxygen will evaluate all
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# C-preprocessor directives found in the sources and include files.
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# The default value is: YES.
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#ENABLE_PREPROCESSING = YES
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ENABLE_PREPROCESSING = NO
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# If the MACRO_EXPANSION tag is set to YES, doxygen will expand all macro names
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# in the source code. If set to NO, only conditional compilation will be
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# performed. Macro expansion can be done in a controlled way by setting
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# EXPAND_ONLY_PREDEF to YES.
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# The default value is: NO.
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# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
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MACRO_EXPANSION = NO
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# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES then
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# the macro expansion is limited to the macros specified with the PREDEFINED and
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# EXPAND_AS_DEFINED tags.
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# The default value is: NO.
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# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
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EXPAND_ONLY_PREDEF = NO
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# If the SEARCH_INCLUDES tag is set to YES, the include files in the
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# INCLUDE_PATH will be searched if a #include is found.
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# The default value is: YES.
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# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
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SEARCH_INCLUDES = YES
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# The INCLUDE_PATH tag can be used to specify one or more directories that
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# contain include files that are not input files but should be processed by the
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# preprocessor.
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# This tag requires that the tag SEARCH_INCLUDES is set to YES.
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INCLUDE_PATH =
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# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
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# patterns (like *.h and *.hpp) to filter out the header-files in the
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# directories. If left blank, the patterns specified with FILE_PATTERNS will be
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# used.
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# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
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INCLUDE_FILE_PATTERNS =
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# The PREDEFINED tag can be used to specify one or more macro names that are
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# defined before the preprocessor is started (similar to the -D option of e.g.
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# gcc). The argument of the tag is a list of macros of the form: name or
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# name=definition (no spaces). If the definition and the "=" are omitted, "=1"
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# is assumed. To prevent a macro definition from being undefined via #undef or
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# recursively expanded use the := operator instead of the = operator.
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# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
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PREDEFINED =
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# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then this
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# tag can be used to specify a list of macro names that should be expanded. The
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# macro definition that is found in the sources will be used. Use the PREDEFINED
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# tag if you want to use a different macro definition that overrules the
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# definition found in the source code.
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# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
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EXPAND_AS_DEFINED =
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# If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
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# remove all references to function-like macros that are alone on a line, have
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# an all uppercase name, and do not end with a semicolon. Such function macros
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# are typically used for boiler-plate code, and will confuse the parser if not
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# removed.
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# The default value is: YES.
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# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
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SKIP_FUNCTION_MACROS = YES
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