forked from lijiext/lammps
644 lines
52 KiB
HTML
644 lines
52 KiB
HTML
<HTML>
|
|
<CENTER><A HREF = "Section_start.html">Previous Section</A> - <A HREF = "http://lammps.sandia.gov">LAMMPS WWW Site</A> - <A HREF = "Manual.html">LAMMPS Documentation</A> - <A HREF = "Section_commands.html#comm">LAMMPS Commands</A> - <A HREF = "Section_packages.html">Next Section</A>
|
|
</CENTER>
|
|
|
|
|
|
|
|
|
|
|
|
|
|
<HR>
|
|
|
|
<H3>3. Commands
|
|
</H3>
|
|
<P>This section describes how a LAMMPS input script is formatted and the
|
|
input script commands used to define a LAMMPS simulation.
|
|
</P>
|
|
3.1 <A HREF = "#cmd_1">LAMMPS input script</A><BR>
|
|
3.2 <A HREF = "#cmd_2">Parsing rules</A><BR>
|
|
3.3 <A HREF = "#cmd_3">Input script structure</A><BR>
|
|
3.4 <A HREF = "#cmd_4">Commands listed by category</A><BR>
|
|
3.5 <A HREF = "#cmd_5">Commands listed alphabetically</A> <BR>
|
|
|
|
<HR>
|
|
|
|
<HR>
|
|
|
|
<A NAME = "cmd_1"></A><H4>3.1 LAMMPS input script
|
|
</H4>
|
|
<P>LAMMPS executes by reading commands from a input script (text file),
|
|
one line at a time. When the input script ends, LAMMPS exits. Each
|
|
command causes LAMMPS to take some action. It may set an internal
|
|
variable, read in a file, or run a simulation. Most commands have
|
|
default settings, which means you only need to use the command if you
|
|
wish to change the default.
|
|
</P>
|
|
<P>In many cases, the ordering of commands in an input script is not
|
|
important. However the following rules apply:
|
|
</P>
|
|
<P>(1) LAMMPS does not read your entire input script and then perform a
|
|
simulation with all the settings. Rather, the input script is read
|
|
one line at a time and each command takes effect when it is read.
|
|
Thus this sequence of commands:
|
|
</P>
|
|
<PRE>timestep 0.5
|
|
run 100
|
|
run 100
|
|
</PRE>
|
|
<P>does something different than this sequence:
|
|
</P>
|
|
<PRE>run 100
|
|
timestep 0.5
|
|
run 100
|
|
</PRE>
|
|
<P>In the first case, the specified timestep (0.5 fmsec) is used for two
|
|
simulations of 100 timesteps each. In the 2nd case, the default
|
|
timestep (1.0 fmsec) is used for the 1st 100 step simulation and a 0.5
|
|
fmsec timestep is used for the 2nd one.
|
|
</P>
|
|
<P>(2) Some commands are only valid when they follow other commands. For
|
|
example you cannot set the temperature of a group of atoms until atoms
|
|
have been defined and a group command is used to define which atoms
|
|
belong to the group.
|
|
</P>
|
|
<P>(3) Sometimes command B will use values that can be set by command A.
|
|
This means command A must precede command B in the input script if it
|
|
is to have the desired effect. For example, the
|
|
<A HREF = "read_data.html">read_data</A> command initializes the system by setting
|
|
up the simulation box and assigning atoms to processors. If default
|
|
values are not desired, the <A HREF = "processors.html">processors</A> and
|
|
<A HREF = "boundary.html">boundary</A> commands need to be used before read_data to
|
|
tell LAMMPS how to map processors to the simulation box.
|
|
</P>
|
|
<P>Many input script errors are detected by LAMMPS and an ERROR or
|
|
WARNING message is printed. <A HREF = "Section_errors.html">This section</A> gives
|
|
more information on what errors mean. The documentation for each
|
|
command lists restrictions on how the command can be used.
|
|
</P>
|
|
<HR>
|
|
|
|
<A NAME = "cmd_2"></A><H4>3.2 Parsing rules
|
|
</H4>
|
|
<P>Each non-blank line in the input script is treated as a command.
|
|
LAMMPS commands are case sensitive. Command names are lower-case, as
|
|
are specified command arguments. Upper case letters may be used in
|
|
file names or user-chosen ID strings.
|
|
</P>
|
|
<P>Here is how each line in the input script is parsed by LAMMPS:
|
|
</P>
|
|
<P>(1) If the last printable character on the line is a "&" character
|
|
(with no surrounding quotes), the command is assumed to continue on
|
|
the next line. The next line is concatenated to the previous line by
|
|
removing the "&" character and newline. This allows long commands to
|
|
be continued across two or more lines.
|
|
</P>
|
|
<P>(2) All characters from the first "#" character onward are treated as
|
|
comment and discarded. See an exception in (6). Note that a
|
|
comment after a trailing "&" character will prevent the command from
|
|
continuing on the next line. Also note that for multi-line commands a
|
|
single leading "#" will comment out the entire command.
|
|
</P>
|
|
<P>(3) The line is searched repeatedly for $ characters, which indicate
|
|
variables that are replaced with a text string. See an exception in
|
|
(6).
|
|
</P>
|
|
<P>If the $ is followed by curly brackets, then the variable name is the
|
|
text inside the curly brackets. If no curly brackets follow the $,
|
|
then the variable name is the single character immediately following
|
|
the $. Thus ${myTemp} and $x refer to variable names "myTemp" and
|
|
"x".
|
|
</P>
|
|
<P>How the variable is converted to a text string depends on what style
|
|
of variable it is; see the <A HREF = "variable">variable</A> doc page for details.
|
|
It can be a variable that stores multiple text strings, and return one
|
|
of them. The returned text string can be multiple "words" (space
|
|
separated) which will then be interpreted as multiple arguments in the
|
|
input command. The variable can also store a numeric formula which
|
|
will be evaluated and its numeric result returned as a string.
|
|
</P>
|
|
<P>As a special case, if the $ is followed by parenthesis, then the text
|
|
inside the parenthesis is treated as an "immediate" variable and
|
|
evaluated as an <A HREF = "variable.html">equal-style variable</A>. This is a way
|
|
to use numeric formulas in an input script without having to assign
|
|
them to variable names. For example, these 3 input script lines:
|
|
</P>
|
|
<PRE>variable X equal (xlo+xhi)/2+sqrt(v_area)
|
|
region 1 block $X 2 INF INF EDGE EDGE
|
|
variable X delete
|
|
</PRE>
|
|
<P>can be replaced by
|
|
</P>
|
|
<PRE>region 1 block $((xlo+xhi)/2+sqrt(v_area)) 2 INF INF EDGE EDGE
|
|
</PRE>
|
|
<P>so that you do not have to define (or discard) a temporary variable X.
|
|
</P>
|
|
<P>Note that neither the curly-bracket or immediate form of variables can
|
|
contain nested $ characters for other variables to substitute for.
|
|
Thus you cannot do this:
|
|
</P>
|
|
<PRE>variable a equal 2
|
|
variable b2 equal 4
|
|
print "B2 = ${b$a}"
|
|
</PRE>
|
|
<P>Nor can you specify this $($x-1.0) for an immediate variable, but
|
|
you could use $(v_x-1.0), since the latter is valid syntax for an
|
|
<A HREF = "variable.html">equal-style variable</A>.
|
|
</P>
|
|
<P>See the <A HREF = "variable.html">variable</A> command for more details of how
|
|
strings are assigned to variables and evaluated, and how they can be
|
|
used in input script commands.
|
|
</P>
|
|
<P>(4) The line is broken into "words" separated by whitespace (tabs,
|
|
spaces). Note that words can thus contain letters, digits,
|
|
underscores, or punctuation characters.
|
|
</P>
|
|
<P>(5) The first word is the command name. All successive words in the
|
|
line are arguments.
|
|
</P>
|
|
<P>(6) If you want text with spaces to be treated as a single argument,
|
|
it can be enclosed in either double or single quotes. A long single
|
|
argument enclosed in quotes can even span multiple lines if the "&"
|
|
character is used, as described above. E.g.
|
|
</P>
|
|
<PRE>print "Volume = $v"
|
|
print 'Volume = $v'
|
|
variable a string "red green blue &
|
|
purple orange cyan"
|
|
if "$<I>steps</I> > 1000" then quit
|
|
</PRE>
|
|
<P>The quotes are removed when the single argument is stored internally.
|
|
</P>
|
|
<P>See the <A HREF = "dump_modify.html">dump modify format</A> or <A HREF = "print.html">print</A> or
|
|
<A HREF = "if.html">if</A> commands for examples. A "#" or "$" character that is
|
|
between quotes will not be treated as a comment indicator in (2) or
|
|
substituted for as a variable in (3).
|
|
</P>
|
|
<P>IMPORTANT NOTE: If the argument is itself a command that requires a
|
|
quoted argument (e.g. using a <A HREF = "print.html">print</A> command as part of an
|
|
<A HREF = "if.html">if</A> or <A HREF = "run.html">run every</A> command), then the double and
|
|
single quotes can be nested in the usual manner. See the doc pages
|
|
for those commands for examples. Only one of level of nesting is
|
|
allowed, but that should be sufficient for most use cases.
|
|
</P>
|
|
<HR>
|
|
|
|
<H4><A NAME = "cmd_3"></A>3.3 Input script structure
|
|
</H4>
|
|
<P>This section describes the structure of a typical LAMMPS input script.
|
|
The "examples" directory in the LAMMPS distribution contains many
|
|
sample input scripts; the corresponding problems are discussed in
|
|
<A HREF = "Section_example.html">Section_example</A>, and animated on the <A HREF = "http://lammps.sandia.gov">LAMMPS
|
|
WWW Site</A>.
|
|
</P>
|
|
<P>A LAMMPS input script typically has 4 parts:
|
|
</P>
|
|
<OL><LI>Initialization
|
|
<LI>Atom definition
|
|
<LI>Settings
|
|
<LI>Run a simulation
|
|
</OL>
|
|
<P>The last 2 parts can be repeated as many times as desired. I.e. run a
|
|
simulation, change some settings, run some more, etc. Each of the 4
|
|
parts is now described in more detail. Remember that almost all the
|
|
commands need only be used if a non-default value is desired.
|
|
</P>
|
|
<P>(1) Initialization
|
|
</P>
|
|
<P>Set parameters that need to be defined before atoms are created or
|
|
read-in from a file.
|
|
</P>
|
|
<P>The relevant commands are <A HREF = "units.html">units</A>,
|
|
<A HREF = "dimension.html">dimension</A>, <A HREF = "newton.html">newton</A>,
|
|
<A HREF = "processors.html">processors</A>, <A HREF = "boundary.html">boundary</A>,
|
|
<A HREF = "atom_style.html">atom_style</A>, <A HREF = "atom_modify.html">atom_modify</A>.
|
|
</P>
|
|
<P>If force-field parameters appear in the files that will be read, these
|
|
commands tell LAMMPS what kinds of force fields are being used:
|
|
<A HREF = "pair_style.html">pair_style</A>, <A HREF = "bond_style.html">bond_style</A>,
|
|
<A HREF = "angle_style.html">angle_style</A>, <A HREF = "dihedral_style.html">dihedral_style</A>,
|
|
<A HREF = "improper_style.html">improper_style</A>.
|
|
</P>
|
|
<P>(2) Atom definition
|
|
</P>
|
|
<P>There are 3 ways to define atoms in LAMMPS. Read them in from a data
|
|
or restart file via the <A HREF = "read_data.html">read_data</A> or
|
|
<A HREF = "read_restart.html">read_restart</A> commands. These files can contain
|
|
molecular topology information. Or create atoms on a lattice (with no
|
|
molecular topology), using these commands: <A HREF = "lattice.html">lattice</A>,
|
|
<A HREF = "region.html">region</A>, <A HREF = "create_box.html">create_box</A>,
|
|
<A HREF = "create_atoms.html">create_atoms</A>. The entire set of atoms can be
|
|
duplicated to make a larger simulation using the
|
|
<A HREF = "replicate.html">replicate</A> command.
|
|
</P>
|
|
<P>(3) Settings
|
|
</P>
|
|
<P>Once atoms and molecular topology are defined, a variety of settings
|
|
can be specified: force field coefficients, simulation parameters,
|
|
output options, etc.
|
|
</P>
|
|
<P>Force field coefficients are set by these commands (they can also be
|
|
set in the read-in files): <A HREF = "pair_coeff.html">pair_coeff</A>,
|
|
<A HREF = "bond_coeff.html">bond_coeff</A>, <A HREF = "angle_coeff.html">angle_coeff</A>,
|
|
<A HREF = "dihedral_coeff.html">dihedral_coeff</A>,
|
|
<A HREF = "improper_coeff.html">improper_coeff</A>,
|
|
<A HREF = "kspace_style.html">kspace_style</A>, <A HREF = "dielectric.html">dielectric</A>,
|
|
<A HREF = "special_bonds.html">special_bonds</A>.
|
|
</P>
|
|
<P>Various simulation parameters are set by these commands:
|
|
<A HREF = "neighbor.html">neighbor</A>, <A HREF = "neigh_modify.html">neigh_modify</A>,
|
|
<A HREF = "group.html">group</A>, <A HREF = "timestep.html">timestep</A>,
|
|
<A HREF = "reset_timestep.html">reset_timestep</A>, <A HREF = "run_style.html">run_style</A>,
|
|
<A HREF = "min_style.html">min_style</A>, <A HREF = "min_modify.html">min_modify</A>.
|
|
</P>
|
|
<P>Fixes impose a variety of boundary conditions, time integration, and
|
|
diagnostic options. The <A HREF = "fix.html">fix</A> command comes in many flavors.
|
|
</P>
|
|
<P>Various computations can be specified for execution during a
|
|
simulation using the <A HREF = "compute.html">compute</A>,
|
|
<A HREF = "compute_modify.html">compute_modify</A>, and <A HREF = "variable.html">variable</A>
|
|
commands.
|
|
</P>
|
|
<P>Output options are set by the <A HREF = "thermo.html">thermo</A>, <A HREF = "dump.html">dump</A>,
|
|
and <A HREF = "restart.html">restart</A> commands.
|
|
</P>
|
|
<P>(4) Run a simulation
|
|
</P>
|
|
<P>A molecular dynamics simulation is run using the <A HREF = "run.html">run</A>
|
|
command. Energy minimization (molecular statics) is performed using
|
|
the <A HREF = "minimize.html">minimize</A> command. A parallel tempering
|
|
(replica-exchange) simulation can be run using the
|
|
<A HREF = "temper.html">temper</A> command.
|
|
</P>
|
|
<HR>
|
|
|
|
<A NAME = "cmd_4"></A><H4>3.4 Commands listed by category
|
|
</H4>
|
|
<P>This section lists all LAMMPS commands, grouped by category. The
|
|
<A HREF = "#cmd_5">next section</A> lists the same commands alphabetically. Note
|
|
that some style options for some commands are part of specific LAMMPS
|
|
packages, which means they cannot be used unless the package was
|
|
included when LAMMPS was built. Not all packages are included in a
|
|
default LAMMPS build. These dependencies are listed as Restrictions
|
|
in the command's documentation.
|
|
</P>
|
|
<P>Initialization:
|
|
</P>
|
|
<P><A HREF = "atom_modify.html">atom_modify</A>, <A HREF = "atom_style.html">atom_style</A>,
|
|
<A HREF = "boundary.html">boundary</A>, <A HREF = "dimension.html">dimension</A>,
|
|
<A HREF = "newton.html">newton</A>, <A HREF = "processors.html">processors</A>, <A HREF = "units.html">units</A>
|
|
</P>
|
|
<P>Atom definition:
|
|
</P>
|
|
<P><A HREF = "create_atoms.html">create_atoms</A>, <A HREF = "create_box.html">create_box</A>,
|
|
<A HREF = "lattice.html">lattice</A>, <A HREF = "read_data.html">read_data</A>,
|
|
<A HREF = "read_dump.html">read_dump</A>, <A HREF = "read_restart.html">read_restart</A>,
|
|
<A HREF = "region.html">region</A>, <A HREF = "replicate.html">replicate</A>
|
|
</P>
|
|
<P>Force fields:
|
|
</P>
|
|
<P><A HREF = "angle_coeff.html">angle_coeff</A>, <A HREF = "angle_style.html">angle_style</A>,
|
|
<A HREF = "bond_coeff.html">bond_coeff</A>, <A HREF = "bond_style.html">bond_style</A>,
|
|
<A HREF = "dielectric.html">dielectric</A>, <A HREF = "dihedral_coeff.html">dihedral_coeff</A>,
|
|
<A HREF = "dihedral_style.html">dihedral_style</A>,
|
|
<A HREF = "improper_coeff.html">improper_coeff</A>,
|
|
<A HREF = "improper_style.html">improper_style</A>,
|
|
<A HREF = "kspace_modify.html">kspace_modify</A>, <A HREF = "kspace_style.html">kspace_style</A>,
|
|
<A HREF = "pair_coeff.html">pair_coeff</A>, <A HREF = "pair_modify.html">pair_modify</A>,
|
|
<A HREF = "pair_style.html">pair_style</A>, <A HREF = "pair_write.html">pair_write</A>,
|
|
<A HREF = "special_bonds.html">special_bonds</A>
|
|
</P>
|
|
<P>Settings:
|
|
</P>
|
|
<P><A HREF = "comm_style.html">comm_style</A>, <A HREF = "group.html">group</A>, <A HREF = "mass.html">mass</A>,
|
|
<A HREF = "min_modify.html">min_modify</A>, <A HREF = "min_style.html">min_style</A>,
|
|
<A HREF = "neigh_modify.html">neigh_modify</A>, <A HREF = "neighbor.html">neighbor</A>,
|
|
<A HREF = "reset_timestep.html">reset_timestep</A>, <A HREF = "run_style.html">run_style</A>,
|
|
<A HREF = "set.html">set</A>, <A HREF = "timestep.html">timestep</A>, <A HREF = "velocity.html">velocity</A>
|
|
</P>
|
|
<P>Fixes:
|
|
</P>
|
|
<P><A HREF = "fix.html">fix</A>, <A HREF = "fix_modify.html">fix_modify</A>, <A HREF = "unfix.html">unfix</A>
|
|
</P>
|
|
<P>Computes:
|
|
</P>
|
|
<P><A HREF = "compute.html">compute</A>, <A HREF = "compute_modify.html">compute_modify</A>,
|
|
<A HREF = "uncompute.html">uncompute</A>
|
|
</P>
|
|
<P>Output:
|
|
</P>
|
|
<P><A HREF = "dump.html">dump</A>, <A HREF = "dump_image.html">dump image</A>,
|
|
<A HREF = "dump_modify.html">dump_modify</A>, <A HREF = "dump_image.html">dump movie</A>,
|
|
<A HREF = "restart.html">restart</A>, <A HREF = "thermo.html">thermo</A>,
|
|
<A HREF = "thermo_modify.html">thermo_modify</A>, <A HREF = "thermo_style.html">thermo_style</A>,
|
|
<A HREF = "undump.html">undump</A>, <A HREF = "write_data.html">write_data</A>,
|
|
<A HREF = "write_dump.html">write_dump</A>, <A HREF = "write_restart.html">write_restart</A>
|
|
</P>
|
|
<P>Actions:
|
|
</P>
|
|
<P><A HREF = "delete_atoms.html">delete_atoms</A>, <A HREF = "delete_bonds.html">delete_bonds</A>,
|
|
<A HREF = "displace_atoms.html">displace_atoms</A>, <A HREF = "change_box.html">change_box</A>,
|
|
<A HREF = "minimize.html">minimize</A>, <A HREF = "neb.html">neb</A> <A HREF = "prd.html">prd</A>,
|
|
<A HREF = "rerun.html">rerun</A>, <A HREF = "run.html">run</A>, <A HREF = "temper.html">temper</A>
|
|
</P>
|
|
<P>Miscellaneous:
|
|
</P>
|
|
<P><A HREF = "clear.html">clear</A>, <A HREF = "echo.html">echo</A>, <A HREF = "if.html">if</A>,
|
|
<A HREF = "include.html">include</A>, <A HREF = "jump.html">jump</A>, <A HREF = "label.html">label</A>,
|
|
<A HREF = "log.html">log</A>, <A HREF = "next.html">next</A>, <A HREF = "print.html">print</A>,
|
|
<A HREF = "shell.html">shell</A>, <A HREF = "variable.html">variable</A>
|
|
</P>
|
|
<HR>
|
|
|
|
<H4><A NAME = "cmd_5"></A><A NAME = "comm"></A>3.5 Individual commands
|
|
</H4>
|
|
<P>This section lists all LAMMPS commands alphabetically, with a separate
|
|
listing below of styles within certain commands. The <A HREF = "#cmd_4">previous
|
|
section</A> lists the same commands, grouped by category. Note
|
|
that some style options for some commands are part of specific LAMMPS
|
|
packages, which means they cannot be used unless the package was
|
|
included when LAMMPS was built. Not all packages are included in a
|
|
default LAMMPS build. These dependencies are listed as Restrictions
|
|
in the command's documentation.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "angle_coeff.html">angle_coeff</A></TD><TD ><A HREF = "angle_style.html">angle_style</A></TD><TD ><A HREF = "atom_modify.html">atom_modify</A></TD><TD ><A HREF = "atom_style.html">atom_style</A></TD><TD ><A HREF = "balance.html">balance</A></TD><TD ><A HREF = "bond_coeff.html">bond_coeff</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "bond_style.html">bond_style</A></TD><TD ><A HREF = "boundary.html">boundary</A></TD><TD ><A HREF = "box.html">box</A></TD><TD ><A HREF = "change_box.html">change_box</A></TD><TD ><A HREF = "clear.html">clear</A></TD><TD ><A HREF = "comm_modify.html">comm_modify</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "comm_style.html">comm_style</A></TD><TD ><A HREF = "compute.html">compute</A></TD><TD ><A HREF = "compute_modify.html">compute_modify</A></TD><TD ><A HREF = "create_atoms.html">create_atoms</A></TD><TD ><A HREF = "create_box.html">create_box</A></TD><TD ><A HREF = "delete_atoms.html">delete_atoms</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "delete_bonds.html">delete_bonds</A></TD><TD ><A HREF = "dielectric.html">dielectric</A></TD><TD ><A HREF = "dihedral_coeff.html">dihedral_coeff</A></TD><TD ><A HREF = "dihedral_style.html">dihedral_style</A></TD><TD ><A HREF = "dimension.html">dimension</A></TD><TD ><A HREF = "displace_atoms.html">displace_atoms</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "dump.html">dump</A></TD><TD ><A HREF = "dump_image.html">dump image</A></TD><TD ><A HREF = "dump_modify.html">dump_modify</A></TD><TD ><A HREF = "dump_image.html">dump movie</A></TD><TD ><A HREF = "echo.html">echo</A></TD><TD ><A HREF = "fix.html">fix</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_modify.html">fix_modify</A></TD><TD ><A HREF = "group.html">group</A></TD><TD ><A HREF = "if.html">if</A></TD><TD ><A HREF = "improper_coeff.html">improper_coeff</A></TD><TD ><A HREF = "improper_style.html">improper_style</A></TD><TD ><A HREF = "include.html">include</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "jump.html">jump</A></TD><TD ><A HREF = "kspace_modify.html">kspace_modify</A></TD><TD ><A HREF = "kspace_style.html">kspace_style</A></TD><TD ><A HREF = "label.html">label</A></TD><TD ><A HREF = "lattice.html">lattice</A></TD><TD ><A HREF = "log.html">log</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "mass.html">mass</A></TD><TD ><A HREF = "minimize.html">minimize</A></TD><TD ><A HREF = "min_modify.html">min_modify</A></TD><TD ><A HREF = "min_style.html">min_style</A></TD><TD ><A HREF = "molecule.html">molecule</A></TD><TD ><A HREF = "neb.html">neb</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "neigh_modify.html">neigh_modify</A></TD><TD ><A HREF = "neighbor.html">neighbor</A></TD><TD ><A HREF = "newton.html">newton</A></TD><TD ><A HREF = "next.html">next</A></TD><TD ><A HREF = "package.html">package</A></TD><TD ><A HREF = "pair_coeff.html">pair_coeff</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_modify.html">pair_modify</A></TD><TD ><A HREF = "pair_style.html">pair_style</A></TD><TD ><A HREF = "pair_write.html">pair_write</A></TD><TD ><A HREF = "partition.html">partition</A></TD><TD ><A HREF = "prd.html">prd</A></TD><TD ><A HREF = "print.html">print</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "processors.html">processors</A></TD><TD ><A HREF = "quit.html">quit</A></TD><TD ><A HREF = "read_data.html">read_data</A></TD><TD ><A HREF = "read_dump.html">read_dump</A></TD><TD ><A HREF = "read_restart.html">read_restart</A></TD><TD ><A HREF = "region.html">region</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "replicate.html">replicate</A></TD><TD ><A HREF = "rerun.html">rerun</A></TD><TD ><A HREF = "reset_timestep.html">reset_timestep</A></TD><TD ><A HREF = "restart.html">restart</A></TD><TD ><A HREF = "run.html">run</A></TD><TD ><A HREF = "run_style.html">run_style</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "set.html">set</A></TD><TD ><A HREF = "shell.html">shell</A></TD><TD ><A HREF = "special_bonds.html">special_bonds</A></TD><TD ><A HREF = "suffix.html">suffix</A></TD><TD ><A HREF = "tad.html">tad</A></TD><TD ><A HREF = "temper.html">temper</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "thermo.html">thermo</A></TD><TD ><A HREF = "thermo_modify.html">thermo_modify</A></TD><TD ><A HREF = "thermo_style.html">thermo_style</A></TD><TD ><A HREF = "timestep.html">timestep</A></TD><TD ><A HREF = "uncompute.html">uncompute</A></TD><TD ><A HREF = "undump.html">undump</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "unfix.html">unfix</A></TD><TD ><A HREF = "units.html">units</A></TD><TD ><A HREF = "variable.html">variable</A></TD><TD ><A HREF = "velocity.html">velocity</A></TD><TD ><A HREF = "write_data.html">write_data</A></TD><TD ><A HREF = "write_dump.html">write_dump</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "write_restart.html">write_restart</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<P>These are additional commands in USER packages, which can be used if
|
|
<A HREF = "Section_start.html#start_3">LAMMPS is built with the appropriate
|
|
package</A>.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "group2ndx.html">group2ndx</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<HR>
|
|
|
|
<H4>Fix styles
|
|
</H4>
|
|
<P>See the <A HREF = "fix.html">fix</A> command for one-line descriptions of each style
|
|
or click on the style itself for a full description. Some of the
|
|
styles have accelerated versions, which can be used if LAMMPS is built
|
|
with the <A HREF = "Section_accelerate.html">appropriate accelerated package</A>.
|
|
This is indicated by additional letters in parenthesis: c = USER-CUDA,
|
|
g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t = OPT.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_adapt.html">adapt</A></TD><TD ><A HREF = "fix_addforce.html">addforce (c)</A></TD><TD ><A HREF = "fix_append_atoms.html">append/atoms</A></TD><TD ><A HREF = "fix_aveforce.html">aveforce (c)</A></TD><TD ><A HREF = "fix_ave_atom.html">ave/atom</A></TD><TD ><A HREF = "fix_ave_correlate.html">ave/correlate</A></TD><TD ><A HREF = "fix_ave_histo.html">ave/histo</A></TD><TD ><A HREF = "fix_ave_spatial.html">ave/spatial</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_ave_time.html">ave/time</A></TD><TD ><A HREF = "fix_balance.html">balance</A></TD><TD ><A HREF = "fix_bond_break.html">bond/break</A></TD><TD ><A HREF = "fix_bond_create.html">bond/create</A></TD><TD ><A HREF = "fix_bond_swap.html">bond/swap</A></TD><TD ><A HREF = "fix_box_relax.html">box/relax</A></TD><TD ><A HREF = "fix_deform.html">deform</A></TD><TD ><A HREF = "fix_deposit.html">deposit</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_drag.html">drag</A></TD><TD ><A HREF = "fix_dt_reset.html">dt/reset</A></TD><TD ><A HREF = "fix_efield.html">efield</A></TD><TD ><A HREF = "fix_enforce2d.html">enforce2d (c)</A></TD><TD ><A HREF = "fix_evaporate.html">evaporate</A></TD><TD ><A HREF = "fix_external.html">external</A></TD><TD ><A HREF = "fix_freeze.html">freeze (c)</A></TD><TD ><A HREF = "fix_gcmc.html">gcmc</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_gld.html">gld</A></TD><TD ><A HREF = "fix_gravity.html">gravity (co)</A></TD><TD ><A HREF = "fix_heat.html">heat</A></TD><TD ><A HREF = "fix_indent.html">indent</A></TD><TD ><A HREF = "fix_langevin.html">langevin (k)</A></TD><TD ><A HREF = "fix_lineforce.html">lineforce</A></TD><TD ><A HREF = "fix_momentum.html">momentum</A></TD><TD ><A HREF = "fix_move.html">move</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_msst.html">msst</A></TD><TD ><A HREF = "fix_neb.html">neb</A></TD><TD ><A HREF = "fix_nh.html">nph (o)</A></TD><TD ><A HREF = "fix_nphug.html">nphug (o)</A></TD><TD ><A HREF = "fix_nph_asphere.html">nph/asphere (o)</A></TD><TD ><A HREF = "fix_nph_sphere.html">nph/sphere (o)</A></TD><TD ><A HREF = "fix_nh.html">npt (co)</A></TD><TD ><A HREF = "fix_npt_asphere.html">npt/asphere (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_npt_sphere.html">npt/sphere (o)</A></TD><TD ><A HREF = "fix_nve.html">nve (cko)</A></TD><TD ><A HREF = "fix_nve_asphere.html">nve/asphere</A></TD><TD ><A HREF = "fix_nve_asphere_noforce.html">nve/asphere/noforce</A></TD><TD ><A HREF = "fix_nve_body.html">nve/body</A></TD><TD ><A HREF = "fix_nve_limit.html">nve/limit</A></TD><TD ><A HREF = "fix_nve_line.html">nve/line</A></TD><TD ><A HREF = "fix_nve_noforce.html">nve/noforce</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_nve_sphere.html">nve/sphere (o)</A></TD><TD ><A HREF = "fix_nve_tri.html">nve/tri</A></TD><TD ><A HREF = "fix_nh.html">nvt (co)</A></TD><TD ><A HREF = "fix_nvt_asphere.html">nvt/asphere (o)</A></TD><TD ><A HREF = "fix_nvt_sllod.html">nvt/sllod (o)</A></TD><TD ><A HREF = "fix_nvt_sphere.html">nvt/sphere (o)</A></TD><TD ><A HREF = "fix_oneway.html">oneway</A></TD><TD ><A HREF = "fix_orient_fcc.html">orient/fcc</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_planeforce.html">planeforce</A></TD><TD ><A HREF = "fix_poems.html">poems</A></TD><TD ><A HREF = "fix_pour.html">pour</A></TD><TD ><A HREF = "fix_press_berendsen.html">press/berendsen</A></TD><TD ><A HREF = "fix_print.html">print</A></TD><TD ><A HREF = "fix_property_atom.html">property/atom</A></TD><TD ><A HREF = "fix_qeq_comb.html">qeq/comb (o)</A></TD><TD ><A HREF = "fix_qeq.html">qeq/dynamic</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_qeq.html">qeq/point</A></TD><TD ><A HREF = "fix_qeq.html">qeq/shielded</A></TD><TD ><A HREF = "fix_qeq.html">qeq/slater</A></TD><TD ><A HREF = "fix_reax_bonds.html">reax/bonds</A></TD><TD ><A HREF = "fix_recenter.html">recenter</A></TD><TD ><A HREF = "fix_restrain.html">restrain</A></TD><TD ><A HREF = "fix_rigid.html">rigid (o)</A></TD><TD ><A HREF = "fix_rigid.html">rigid/nph (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_rigid.html">rigid/npt (o)</A></TD><TD ><A HREF = "fix_rigid.html">rigid/nve (o)</A></TD><TD ><A HREF = "fix_rigid.html">rigid/nvt (o)</A></TD><TD ><A HREF = "fix_rigid.html">rigid/small (o)</A></TD><TD ><A HREF = "fix_rigid.html">rigid/small/nph</A></TD><TD ><A HREF = "fix_rigid.html">rigid/small/npt</A></TD><TD ><A HREF = "fix_rigid.html">rigid/small/nve</A></TD><TD ><A HREF = "fix_rigid.html">rigid/small/nvt</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_setforce.html">setforce (c)</A></TD><TD ><A HREF = "fix_shake.html">shake (c)</A></TD><TD ><A HREF = "fix_spring.html">spring</A></TD><TD ><A HREF = "fix_spring_rg.html">spring/rg</A></TD><TD ><A HREF = "fix_spring_self.html">spring/self</A></TD><TD ><A HREF = "fix_srd.html">srd</A></TD><TD ><A HREF = "fix_store_force.html">store/force</A></TD><TD ><A HREF = "fix_store_state.html">store/state</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_temp_berendsen.html">temp/berendsen (c)</A></TD><TD ><A HREF = "fix_temp_csvr.html">temp/csvr</A></TD><TD ><A HREF = "fix_temp_rescale.html">temp/rescale (c)</A></TD><TD ><A HREF = "fix_thermal_conductivity.html">thermal/conductivity</A></TD><TD ><A HREF = "fix_tmd.html">tmd</A></TD><TD ><A HREF = "fix_ttm.html">ttm</A></TD><TD ><A HREF = "fix_tune_kspace.html">tune/kspace</A></TD><TD ><A HREF = "fix_vector.html">vector</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_viscosity.html">viscosity</A></TD><TD ><A HREF = "fix_viscous.html">viscous (c)</A></TD><TD ><A HREF = "fix_wall.html">wall/colloid</A></TD><TD ><A HREF = "fix_wall_gran.html">wall/gran</A></TD><TD ><A HREF = "fix_wall.html">wall/harmonic</A></TD><TD ><A HREF = "fix_wall.html">wall/lj1043</A></TD><TD ><A HREF = "fix_wall.html">wall/lj126</A></TD><TD ><A HREF = "fix_wall.html">wall/lj93</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_wall_piston.html">wall/piston</A></TD><TD ><A HREF = "fix_wall_reflect.html">wall/reflect</A></TD><TD ><A HREF = "fix_wall_region.html">wall/region</A></TD><TD ><A HREF = "fix_wall_srd.html">wall/srd</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<P>These are additional fix styles in USER packages, which can be used if
|
|
<A HREF = "Section_start.html#start_3">LAMMPS is built with the appropriate
|
|
package</A>.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_adapt_fep.html">adapt/fep</A></TD><TD ><A HREF = "fix_addtorque.html">addtorque</A></TD><TD ><A HREF = "fix_atc.html">atc</A></TD><TD ><A HREF = "fix_colvars.html">colvars</A></TD><TD ><A HREF = "fix_imd.html">imd</A></TD><TD ><A HREF = "fix_langevin_eff.html">langevin/eff</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_lb_fluid.html">lb/fluid</A></TD><TD ><A HREF = "fix_lb_momentum.html">lb/momentum</A></TD><TD ><A HREF = "fix_lb_pc.html">lb/pc</A></TD><TD ><A HREF = "fix_lb_rigid_pc_sphere.html">lb/rigid/pc/sphere</A></TD><TD ><A HREF = "fix_lb_viscous.html">lb/viscous</A></TD><TD ><A HREF = "fix_meso.html">meso</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_meso_stationary.html">meso/stationary</A></TD><TD ><A HREF = "fix_nh_eff.html">nph/eff</A></TD><TD ><A HREF = "fix_nh_eff.html">npt/eff</A></TD><TD ><A HREF = "fix_nve_eff.html">nve/eff</A></TD><TD ><A HREF = "fix_nh_eff.html">nvt/eff</A></TD><TD ><A HREF = "fix_nvt_sllod_eff.html">nvt/sllod/eff</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_phonon.html">phonon</A></TD><TD ><A HREF = "fix_qeq_reax.html">qeq/reax</A></TD><TD ><A HREF = "fix_qmmm.html">qmmm</A></TD><TD ><A HREF = "fix_reax_bonds.html">reax/c/bonds</A></TD><TD ><A HREF = "fix_reaxc_species.html">reax/c/species</A></TD><TD ><A HREF = "fix_smd.html">smd</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "fix_temp_rescale_eff.html">temp/rescale/eff</A></TD><TD ><A HREF = "fix_ti_rs.html">ti/rs</A></TD><TD ><A HREF = "fix_ti_spring.html">ti/spring</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<HR>
|
|
|
|
<H4>Compute styles
|
|
</H4>
|
|
<P>See the <A HREF = "compute.html">compute</A> command for one-line descriptions of
|
|
each style or click on the style itself for a full description. Some
|
|
of the styles have accelerated versions, which can be used if LAMMPS
|
|
is built with the <A HREF = "Section_accelerate.html">appropriate accelerated
|
|
package</A>. This is indicated by additional
|
|
letters in parenthesis: c = USER-CUDA, g = GPU, i = USER-INTEL, k =
|
|
KOKKOS, o = USER-OMP, t = OPT.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_angle_local.html">angle/local</A></TD><TD ><A HREF = "compute_atom_molecule.html">atom/molecule</A></TD><TD ><A HREF = "compute_body_local.html">body/local</A></TD><TD ><A HREF = "compute_bond_local.html">bond/local</A></TD><TD ><A HREF = "compute_centro_atom.html">centro/atom</A></TD><TD ><A HREF = "compute_cluster_atom.html">cluster/atom</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_cna_atom.html">cna/atom</A></TD><TD ><A HREF = "compute_com.html">com</A></TD><TD ><A HREF = "compute_com_molecule.html">com/molecule</A></TD><TD ><A HREF = "compute_contact_atom.html">contact/atom</A></TD><TD ><A HREF = "compute_coord_atom.html">coord/atom</A></TD><TD ><A HREF = "compute_damage_atom.html">damage/atom</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_dihedral_local.html">dihedral/local</A></TD><TD ><A HREF = "compute_dilatation_atom.html">dilatation/atom</A></TD><TD ><A HREF = "compute_displace_atom.html">displace/atom</A></TD><TD ><A HREF = "compute_erotate_asphere.html">erotate/asphere</A></TD><TD ><A HREF = "compute_erotate_rigid.html">erotate/rigid</A></TD><TD ><A HREF = "compute_erotate_sphere.html">erotate/sphere</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_erotate_sphere_atom.html">erotate/sphere/atom</A></TD><TD ><A HREF = "compute_event_displace.html">event/displace</A></TD><TD ><A HREF = "compute_group_group.html">group/group</A></TD><TD ><A HREF = "compute_gyration.html">gyration</A></TD><TD ><A HREF = "compute_gyration_molecule.html">gyration/molecule</A></TD><TD ><A HREF = "compute_heat_flux.html">heat/flux</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_improper_local.html">improper/local</A></TD><TD ><A HREF = "compute_inertia_molecule.html">inertia/molecule</A></TD><TD ><A HREF = "compute_ke.html">ke</A></TD><TD ><A HREF = "compute_ke_atom.html">ke/atom</A></TD><TD ><A HREF = "compute_ke_rigid.html">ke/rigid</A></TD><TD ><A HREF = "compute_msd.html">msd</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_msd_molecule.html">msd/molecule</A></TD><TD ><A HREF = "compute_msd_nongauss.html">msd/nongauss</A></TD><TD ><A HREF = "compute_pair.html">pair</A></TD><TD ><A HREF = "compute_pair_local.html">pair/local</A></TD><TD ><A HREF = "compute_pe.html">pe (c)</A></TD><TD ><A HREF = "compute_pe_atom.html">pe/atom</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_plasticity_atom.html">plasticity/atom</A></TD><TD ><A HREF = "compute_pressure.html">pressure (c)</A></TD><TD ><A HREF = "compute_property_atom.html">property/atom</A></TD><TD ><A HREF = "compute_property_local.html">property/local</A></TD><TD ><A HREF = "compute_property_molecule.html">property/molecule</A></TD><TD ><A HREF = "compute_rdf.html">rdf</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_reduce.html">reduce</A></TD><TD ><A HREF = "compute_reduce.html">reduce/region</A></TD><TD ><A HREF = "compute_slice.html">slice</A></TD><TD ><A HREF = "compute_sna.html">sna/atom</A></TD><TD ><A HREF = "compute_sna.html">snad/atom</A></TD><TD ><A HREF = "compute_sna.html">snav/atom</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_stress_atom.html">stress/atom</A></TD><TD ><A HREF = "compute_temp.html">temp (c)</A></TD><TD ><A HREF = "compute_temp_asphere.html">temp/asphere</A></TD><TD ><A HREF = "compute_temp_com.html">temp/com</A></TD><TD ><A HREF = "compute_temp_deform.html">temp/deform</A></TD><TD ><A HREF = "compute_temp_partial.html">temp/partial (c)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_temp_profile.html">temp/profile</A></TD><TD ><A HREF = "compute_temp_ramp.html">temp/ramp</A></TD><TD ><A HREF = "compute_temp_region.html">temp/region</A></TD><TD ><A HREF = "compute_temp_sphere.html">temp/sphere</A></TD><TD ><A HREF = "compute_ti.html">ti</A></TD><TD ><A HREF = "compute_vacf.html">vacf</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_voronoi_atom.html">voronoi/atom</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<P>These are additional compute styles in USER packages, which can be
|
|
used if <A HREF = "Section_start.html#start_3">LAMMPS is built with the appropriate
|
|
package</A>.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_ackland_atom.html">ackland/atom</A></TD><TD ><A HREF = "compute_basal_atom.html">basal/atom</A></TD><TD ><A HREF = "compute_fep.html">fep</A></TD><TD ><A HREF = "compute_ke_eff.html">ke/eff</A></TD><TD ><A HREF = "compute_ke_atom_eff.html">ke/atom/eff</A></TD><TD ><A HREF = "compute_meso_e_atom.html">meso_e/atom</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "compute_meso_rho_atom.html">meso_rho/atom</A></TD><TD ><A HREF = "compute_meso_t_atom.html">meso_t/atom</A></TD><TD ><A HREF = "compute_temp_eff.html">temp/eff</A></TD><TD ><A HREF = "compute_temp_deform_eff.html">temp/deform/eff</A></TD><TD ><A HREF = "compute_temp_region_eff.html">temp/region/eff</A></TD><TD ><A HREF = "compute_temp_rotate.html">temp/rotate</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<HR>
|
|
|
|
<H4>Pair_style potentials
|
|
</H4>
|
|
<P>See the <A HREF = "pair_style.html">pair_style</A> command for an overview of pair
|
|
potentials. Click on the style itself for a full description. Many
|
|
of the styles have accelerated versions, which can be used if LAMMPS
|
|
is built with the <A HREF = "Section_accelerate.html">appropriate accelerated
|
|
package</A>. This is indicated by additional
|
|
letters in parenthesis: c = USER-CUDA, g = GPU, i = USER-INTEL, k =
|
|
KOKKOS, o = USER-OMP, t = OPT.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_none.html">none</A></TD><TD ><A HREF = "pair_hybrid.html">hybrid</A></TD><TD ><A HREF = "pair_hybrid.html">hybrid/overlay</A></TD><TD ><A HREF = "pair_adp.html">adp (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_airebo.html">airebo (o)</A></TD><TD ><A HREF = "pair_beck.html">beck (go)</A></TD><TD ><A HREF = "pair_body.html">body</A></TD><TD ><A HREF = "pair_bop.html">bop</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_born.html">born (go)</A></TD><TD ><A HREF = "pair_born.html">born/coul/long (cgo)</A></TD><TD ><A HREF = "pair_born.html">born/coul/msm (o)</A></TD><TD ><A HREF = "pair_born.html">born/coul/wolf (go)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_brownian.html">brownian (o)</A></TD><TD ><A HREF = "pair_brownian.html">brownian/poly (o)</A></TD><TD ><A HREF = "pair_buck.html">buck (cgo)</A></TD><TD ><A HREF = "pair_buck.html">buck/coul/cut (cgo)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_buck.html">buck/coul/long (cgo)</A></TD><TD ><A HREF = "pair_buck.html">buck/coul/msm (o)</A></TD><TD ><A HREF = "pair_buck_long.html">buck/long/coul/long (o)</A></TD><TD ><A HREF = "pair_colloid.html">colloid (go)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_comb.html">comb (o)</A></TD><TD ><A HREF = "pair_comb.html">comb3</A></TD><TD ><A HREF = "pair_coul.html">coul/cut (gko)</A></TD><TD ><A HREF = "pair_coul.html">coul/debye (go)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_coul.html">coul/dsf (go)</A></TD><TD ><A HREF = "pair_coul.html">coul/long (go)</A></TD><TD ><A HREF = "pair_coul.html">coul/msm</A></TD><TD ><A HREF = "pair_coul.html">coul/wolf (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_dpd.html">dpd (o)</A></TD><TD ><A HREF = "pair_dpd.html">dpd/tstat (o)</A></TD><TD ><A HREF = "pair_dsmc.html">dsmc</A></TD><TD ><A HREF = "pair_eam.html">eam (cgot)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_eam.html">eam/alloy (cgot)</A></TD><TD ><A HREF = "pair_eam.html">eam/fs (cgot)</A></TD><TD ><A HREF = "pair_eim.html">eim (o)</A></TD><TD ><A HREF = "pair_gauss.html">gauss (go)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_gayberne.html">gayberne (gio)</A></TD><TD ><A HREF = "pair_gran.html">gran/hertz/history (o)</A></TD><TD ><A HREF = "pair_gran.html">gran/hooke (co)</A></TD><TD ><A HREF = "pair_gran.html">gran/hooke/history (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_hbond_dreiding.html">hbond/dreiding/lj (o)</A></TD><TD ><A HREF = "pair_hbond_dreiding.html">hbond/dreiding/morse (o)</A></TD><TD ><A HREF = "pair_kim.html">kim</A></TD><TD ><A HREF = "pair_lcbop.html">lcbop</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_line_lj.html">line/lj (o)</A></TD><TD ><A HREF = "pair_charmm.html">lj/charmm/coul/charmm (co)</A></TD><TD ><A HREF = "pair_charmm.html">lj/charmm/coul/charmm/implicit (co)</A></TD><TD ><A HREF = "pair_charmm.html">lj/charmm/coul/long (cgio)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_charmm.html">lj/charmm/coul/msm</A></TD><TD ><A HREF = "pair_class2.html">lj/class2 (cgo)</A></TD><TD ><A HREF = "pair_class2.html">lj/class2/coul/cut (co)</A></TD><TD ><A HREF = "pair_class2.html">lj/class2/coul/long (cgo)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_lj.html">lj/cut (cgikot)</A></TD><TD ><A HREF = "pair_lj.html">lj/cut/coul/cut (cgko)</A></TD><TD ><A HREF = "pair_lj.html">lj/cut/coul/debye (cgo)</A></TD><TD ><A HREF = "pair_lj.html">lj/cut/coul/dsf (go)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_lj.html">lj/cut/coul/long (cgikot)</A></TD><TD ><A HREF = "pair_lj.html">lj/cut/coul/msm (go)</A></TD><TD ><A HREF = "pair_dipole.html">lj/cut/dipole/cut (go)</A></TD><TD ><A HREF = "pair_dipole.html">lj/cut/dipole/long</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_lj.html">lj/cut/tip4p/cut (o)</A></TD><TD ><A HREF = "pair_lj.html">lj/cut/tip4p/long (ot)</A></TD><TD ><A HREF = "pair_lj_expand.html">lj/expand (cgo)</A></TD><TD ><A HREF = "pair_gromacs.html">lj/gromacs (cgo)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_gromacs.html">lj/gromacs/coul/gromacs (co)</A></TD><TD ><A HREF = "pair_lj_long.html">lj/long/coul/long (o)</A></TD><TD ><A HREF = "pair_dipole.html">lj/long/dipole/long</A></TD><TD ><A HREF = "pair_lj_long.html">lj/long/tip4p/long</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_lj_smooth.html">lj/smooth (co)</A></TD><TD ><A HREF = "pair_lj_smooth_linear.html">lj/smooth/linear (o)</A></TD><TD ><A HREF = "pair_lj96.html">lj96/cut (cgo)</A></TD><TD ><A HREF = "pair_lubricate.html">lubricate (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_lubricate.html">lubricate/poly (o)</A></TD><TD ><A HREF = "pair_lubricateU.html">lubricateU</A></TD><TD ><A HREF = "pair_lubricateU.html">lubricateU/poly</A></TD><TD ><A HREF = "pair_meam.html">meam (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_mie.html">mie/cut (o)</A></TD><TD ><A HREF = "pair_morse.html">morse (cgot)</A></TD><TD ><A HREF = "pair_nb3b_harmonic.html">nb3b/harmonic (o)</A></TD><TD ><A HREF = "pair_nm.html">nm/cut (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_nm.html">nm/cut/coul/cut (o)</A></TD><TD ><A HREF = "pair_nm.html">nm/cut/coul/long (o)</A></TD><TD ><A HREF = "pair_peri.html">peri/eps</A></TD><TD ><A HREF = "pair_peri.html">peri/lps (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_peri.html">peri/pmb (o)</A></TD><TD ><A HREF = "pair_peri.html">peri/ves</A></TD><TD ><A HREF = "pair_reax.html">reax</A></TD><TD ><A HREF = "pair_airebo.html">rebo (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_resquared.html">resquared (go)</A></TD><TD ><A HREF = "pair_snap.html">snap</A></TD><TD ><A HREF = "pair_soft.html">soft (go)</A></TD><TD ><A HREF = "pair_sw.html">sw (cgo)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_table.html">table (gko)</A></TD><TD ><A HREF = "pair_tersoff.html">tersoff (co)</A></TD><TD ><A HREF = "pair_tersoff_mod.html">tersoff/mod (o)</A></TD><TD ><A HREF = "pair_tersoff_zbl.html">tersoff/zbl (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_coul.html">tip4p/cut (o)</A></TD><TD ><A HREF = "pair_coul.html">tip4p/long (o)</A></TD><TD ><A HREF = "pair_tri_lj.html">tri/lj (o)</A></TD><TD ><A HREF = "pair_yukawa.html">yukawa (go)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_yukawa_colloid.html">yukawa/colloid (go)</A></TD><TD ><A HREF = "pair_zbl.html">zbl (o)</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<P>These are additional pair styles in USER packages, which can be used
|
|
if <A HREF = "Section_start.html#start_3">LAMMPS is built with the appropriate
|
|
package</A>.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_awpmd.html">awpmd/cut</A></TD><TD ><A HREF = "pair_lj_soft.html">coul/cut/soft (o)</A></TD><TD ><A HREF = "pair_coul_diel.html">coul/diel (o)</A></TD><TD ><A HREF = "pair_lj_soft.html">coul/long/soft (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_eam.html">eam/cd (o)</A></TD><TD ><A HREF = "pair_edip.html">edip (o)</A></TD><TD ><A HREF = "pair_eff.html">eff/cut</A></TD><TD ><A HREF = "pair_gauss.html">gauss/cut</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_list.html">list</A></TD><TD ><A HREF = "pair_charmm.html">lj/charmm/coul/long/soft (o)</A></TD><TD ><A HREF = "pair_lj_soft.html">lj/cut/coul/cut/soft (o)</A></TD><TD ><A HREF = "pair_lj_soft.html">lj/cut/coul/long/soft (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_dipole.html">lj/cut/dipole/sf (go)</A></TD><TD ><A HREF = "pair_lj_soft.html">lj/cut/soft (o)</A></TD><TD ><A HREF = "pair_lj_soft.html">lj/cut/tip4p/long/soft (o)</A></TD><TD ><A HREF = "pair_sdk.html">lj/sdk (go)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_sdk.html">lj/sdk/coul/long (go)</A></TD><TD ><A HREF = "pair_sdk.html">lj/sdk/coul/msm (o)</A></TD><TD ><A HREF = "pair_lj_sf.html">lj/sf (o)</A></TD><TD ><A HREF = "pair_meam_spline.html">meam/spline</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_meam_sw_spline.html">meam/sw/spline</A></TD><TD ><A HREF = "pair_reax_c.html">reax/c</A></TD><TD ><A HREF = "pair_sph_heatconduction.html">sph/heatconduction</A></TD><TD ><A HREF = "pair_sph_idealgas.html">sph/idealgas</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_sph_lj.html">sph/lj</A></TD><TD ><A HREF = "pair_sph_rhosum.html">sph/rhosum</A></TD><TD ><A HREF = "pair_sph_taitwater.html">sph/taitwater</A></TD><TD ><A HREF = "pair_sph_taitwater_morris.html">sph/taitwater/morris</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "pair_tersoff.html">tersoff/table (o)</A></TD><TD ><A HREF = "pair_lj_soft.html">tip4p/long/soft (o)</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<HR>
|
|
|
|
<H4>Bond_style potentials
|
|
</H4>
|
|
<P>See the <A HREF = "bond_style.html">bond_style</A> command for an overview of bond
|
|
potentials. Click on the style itself for a full description. Some
|
|
of the styles have accelerated versions, which can be used if LAMMPS
|
|
is built with the <A HREF = "Section_accelerate.html">appropriate accelerated
|
|
package</A>. This is indicated by additional
|
|
letters in parenthesis: c = USER-CUDA, g = GPU, i = USER-INTEL, k =
|
|
KOKKOS, o = USER-OMP, t = OPT.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "bond_none.html">none</A></TD><TD ><A HREF = "bond_hybrid.html">hybrid</A></TD><TD ><A HREF = "bond_class2.html">class2 (o)</A></TD><TD ><A HREF = "bond_fene.html">fene (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "bond_fene_expand.html">fene/expand (o)</A></TD><TD ><A HREF = "bond_harmonic.html">harmonic (o)</A></TD><TD ><A HREF = "bond_morse.html">morse (o)</A></TD><TD ><A HREF = "bond_nonlinear.html">nonlinear (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "bond_quartic.html">quartic (o)</A></TD><TD ><A HREF = "bond_table.html">table (o)</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<P>These are additional bond styles in USER packages, which can be used
|
|
if <A HREF = "Section_start.html#start_3">LAMMPS is built with the appropriate
|
|
package</A>.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "bond_harmonic_shift.html">harmonic/shift (o)</A></TD><TD ><A HREF = "bond_harmonic_shift_cut.html">harmonic/shift/cut (o)</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<HR>
|
|
|
|
<H4>Angle_style potentials
|
|
</H4>
|
|
<P>See the <A HREF = "angle_style.html">angle_style</A> command for an overview of
|
|
angle potentials. Click on the style itself for a full description.
|
|
Some of the styles have accelerated versions, which can be used if
|
|
LAMMPS is built with the <A HREF = "Section_accelerate.html">appropriate accelerated
|
|
package</A>. This is indicated by additional
|
|
letters in parenthesis: c = USER-CUDA, g = GPU, i = USER-INTEL, k =
|
|
KOKKOS, o = USER-OMP, t = OPT.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "angle_none.html">none</A></TD><TD ><A HREF = "angle_hybrid.html">hybrid</A></TD><TD ><A HREF = "angle_charmm.html">charmm (o)</A></TD><TD ><A HREF = "angle_class2.html">class2 (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "angle_cosine.html">cosine (o)</A></TD><TD ><A HREF = "angle_cosine_delta.html">cosine/delta (o)</A></TD><TD ><A HREF = "angle_cosine_periodic.html">cosine/periodic (o)</A></TD><TD ><A HREF = "angle_cosine_squared.html">cosine/squared (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "angle_harmonic.html">harmonic (o)</A></TD><TD ><A HREF = "angle_table.html">table (o)</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<P>These are additional angle styles in USER packages, which can be used
|
|
if <A HREF = "Section_start.html#start_3">LAMMPS is built with the appropriate
|
|
package</A>.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "angle_cosine_shift.html">cosine/shift (o)</A></TD><TD ><A HREF = "angle_cosine_shift_exp.html">cosine/shift/exp (o)</A></TD><TD ><A HREF = "angle_dipole.html">dipole (o)</A></TD><TD ><A HREF = "angle_fourier.html">fourier (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "angle_fourier_simple.html">fourier/simple (o)</A></TD><TD ><A HREF = "angle_quartic.html">quartic (o)</A></TD><TD ><A HREF = "angle_sdk.html">sdk</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<HR>
|
|
|
|
<H4>Dihedral_style potentials
|
|
</H4>
|
|
<P>See the <A HREF = "dihedral_style.html">dihedral_style</A> command for an overview
|
|
of dihedral potentials. Click on the style itself for a full
|
|
description. Some of the styles have accelerated versions, which can
|
|
be used if LAMMPS is built with the <A HREF = "Section_accelerate.html">appropriate accelerated
|
|
package</A>. This is indicated by additional
|
|
letters in parenthesis: c = USER-CUDA, g = GPU, i = USER-INTEL, k =
|
|
KOKKOS, o = USER-OMP, t = OPT.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "dihedral_none.html">none</A></TD><TD ><A HREF = "dihedral_hybrid.html">hybrid</A></TD><TD ><A HREF = "dihedral_charmm.html">charmm (o)</A></TD><TD ><A HREF = "dihedral_class2.html">class2 (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "dihedral_harmonic.html">harmonic (o)</A></TD><TD ><A HREF = "dihedral_helix.html">helix (o)</A></TD><TD ><A HREF = "dihedral_multi_harmonic.html">multi/harmonic (o)</A></TD><TD ><A HREF = "dihedral_opls.html">opls (o)</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<P>These are additional dihedral styles in USER packages, which can be
|
|
used if <A HREF = "Section_start.html#start_3">LAMMPS is built with the appropriate
|
|
package</A>.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "dihedral_cosine_shift_exp.html">cosine/shift/exp (o)</A></TD><TD ><A HREF = "dihedral_fourier.html">fourier (o)</A></TD><TD ><A HREF = "dihedral_nharmonic.html">nharmonic (o)</A></TD><TD ><A HREF = "dihedral_quadratic.html">quadratic (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "dihedral_table.html">table (o)</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<HR>
|
|
|
|
<H4>Improper_style potentials
|
|
</H4>
|
|
<P>See the <A HREF = "improper_style.html">improper_style</A> command for an overview
|
|
of improper potentials. Click on the style itself for a full
|
|
description. Some of the styles have accelerated versions, which can
|
|
be used if LAMMPS is built with the <A HREF = "Section_accelerate.html">appropriate accelerated
|
|
package</A>. This is indicated by additional
|
|
letters in parenthesis: c = USER-CUDA, g = GPU, i = USER-INTEL, k =
|
|
KOKKOS, o = USER-OMP, t = OPT.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "improper_none.html">none</A></TD><TD ><A HREF = "improper_hybrid.html">hybrid</A></TD><TD ><A HREF = "improper_class2.html">class2 (o)</A></TD><TD ><A HREF = "improper_cvff.html">cvff (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "improper_harmonic.html">harmonic (o)</A></TD><TD ><A HREF = "improper_umbrella.html">umbrella (o)</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<P>These are additional improper styles in USER packages, which can be
|
|
used if <A HREF = "Section_start.html#start_3">LAMMPS is built with the appropriate
|
|
package</A>.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "improper_cossq.html">cossq (o)</A></TD><TD ><A HREF = "improper_fourier.html">fourier (o)</A></TD><TD ><A HREF = "improper_ring.html">ring (o)</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
<HR>
|
|
|
|
<H4>Kspace solvers
|
|
</H4>
|
|
<P>See the <A HREF = "kspace_style.html">kspace_style</A> command for an overview of
|
|
Kspace solvers. Click on the style itself for a full description.
|
|
Some of the styles have accelerated versions, which can be used if
|
|
LAMMPS is built with the <A HREF = "Section_accelerate.html">appropriate accelerated
|
|
package</A>. This is indicated by additional
|
|
letters in parenthesis: c = USER-CUDA, g = GPU, i = USER-INTEL, k =
|
|
KOKKOS, o = USER-OMP, t = OPT.
|
|
</P>
|
|
<DIV ALIGN=center><TABLE BORDER=1 >
|
|
<TR ALIGN="center"><TD ><A HREF = "kspace_style.html">ewald (o)</A></TD><TD ><A HREF = "kspace_style.html">ewald/disp</A></TD><TD ><A HREF = "kspace_style.html">msm (o)</A></TD><TD ><A HREF = "kspace_style.html">msm/cg (o)</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "kspace_style.html">pppm (cgo)</A></TD><TD ><A HREF = "kspace_style.html">pppm/cg (o)</A></TD><TD ><A HREF = "kspace_style.html">pppm/disp</A></TD><TD ><A HREF = "kspace_style.html">pppm/disp/tip4p</A></TD></TR>
|
|
<TR ALIGN="center"><TD ><A HREF = "kspace_style.html">pppm/tip4p (o)</A>
|
|
</TD></TR></TABLE></DIV>
|
|
|
|
</HTML>
|