forked from lijiext/lammps
168 lines
5.6 KiB
Plaintext
168 lines
5.6 KiB
Plaintext
"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
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:link(lws,http://lammps.sandia.gov)
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:link(ld,Manual.html)
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:link(lc,Section_commands.html#comm)
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:line
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pair_style edip command :h3
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[Syntax:]
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pair_style edip :pre
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pair_style edip/omp :pre
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[Examples:]
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pair_style edip
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pair_coeff * * Si.edip Si
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[Description:]
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The {edip} style computes a 3-body "EDIP"_#EDIP potential which is
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popular for modeling silicon materials where it can have advantages
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over other models such as the "Stillinger-Weber"_pair_sw.html or
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"Tersoff"_pair_tersoff.html potentials. In EDIP, the energy E of a
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system of atoms is
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:c,image(Eqs/pair_edip.jpg)
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where phi2 is a two-body term and phi3 is a three-body term. The
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summations in the formula are over all neighbors J and K of atom I
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within a cutoff distance = a.
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Both terms depend on the local environment of atom I through its
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effective coordination number defined by Z, which is unity for a
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cutoff distance < c and gently goes to 0 at distance = a.
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Only a single pair_coeff command is used with the {edip} style which
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specifies a EDIP potential file with parameters for all
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needed elements. These are mapped to LAMMPS atom types by specifying
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N additional arguments after the filename in the pair_coeff command,
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where N is the number of LAMMPS atom types:
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filename
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N element names = mapping of EDIP elements to atom types :ul
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See the "pair_coeff"_pair_coeff.html doc page for alternate ways
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to specify the path for the potential file.
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As an example, imagine a file Si.edip has EDIP values for Si.
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EDIP files in the {potentials} directory of the LAMMPS
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distribution have a ".edip" suffix. Lines that are not blank or
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comments (starting with #) define parameters for a triplet of
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elements. The parameters in a single entry correspond to the two-body
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and three-body coefficients in the formula above:
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element 1 (the center atom in a 3-body interaction)
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element 2
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element 3
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A (energy units)
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B (distance units)
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cutoffA (distance units)
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cutoffC (distance units)
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alpha
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beta
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eta
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gamma (distance units)
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lambda (energy units)
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mu
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tho
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sigma (distance units)
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Q0
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u1
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u2
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u3
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u4 :ul
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The A, B, beta, sigma parameters are used only for two-body interactions.
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The eta, gamma, lambda, mu, Q0 and all u1 to u4 parameters are used only
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for three-body interactions. The alpha and cutoffC parameters are used
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for the coordination environment function only.
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The EDIP potential file must contain entries for all the
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elements listed in the pair_coeff command. It can also contain
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entries for additional elements not being used in a particular
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simulation; LAMMPS ignores those entries.
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For a single-element simulation, only a single entry is required
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(e.g. SiSiSi). For a two-element simulation, the file must contain 8
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entries (for SiSiSi, SiSiC, SiCSi, SiCC, CSiSi, CSiC, CCSi, CCC), that
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specify EDIP parameters for all permutations of the two elements
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interacting in three-body configurations. Thus for 3 elements, 27
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entries would be required, etc.
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At the moment, only a single element parametrization is
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implemented. However, the author is not aware of other
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multi-element EDIP parametrizations. If you know any and
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you are interest in that, please contact the author of
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the EDIP package.
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:line
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Styles with a {cuda}, {gpu}, {intel}, {kk}, {omp}, or {opt} suffix are
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functionally the same as the corresponding style without the suffix.
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They have been optimized to run faster, depending on your available
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hardware, as discussed in "Section_accelerate"_Section_accelerate.html
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of the manual. The accelerated styles take the same arguments and
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should produce the same results, except for round-off and precision
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issues.
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These accelerated styles are part of the USER-CUDA, GPU, USER-INTEL,
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KOKKOS, USER-OMP and OPT packages, respectively. They are only
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enabled if LAMMPS was built with those packages. See the "Making
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LAMMPS"_Section_start.html#start_3 section for more info.
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You can specify the accelerated styles explicitly in your input script
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by including their suffix, or you can use the "-suffix command-line
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switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
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use the "suffix"_suffix.html command in your input script.
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See "Section_accelerate"_Section_accelerate.html of the manual for
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more instructions on how to use the accelerated styles effectively.
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:line
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[Mixing, shift, table, tail correction, restart, rRESPA info]:
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This pair style does not support the "pair_modify"_pair_modify.html
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shift, table, and tail options.
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This pair style does not write its information to "binary restart
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files"_restart.html, since it is stored in potential files. Thus, you
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need to re-specify the pair_style and pair_coeff commands in an input
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script that reads a restart file.
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This pair style can only be used via the {pair} keyword of the
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"run_style respa"_run_style.html command. It does not support the
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{inner}, {middle}, {outer} keywords.
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:line
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[Restrictions:]
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This angle style can only be used if LAMMPS was built with the
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USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3
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section for more info on packages.
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This pair style requires the "newton"_newton.html setting to be "on"
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for pair interactions.
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The EDIP potential files provided with LAMMPS (see the potentials directory)
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are parameterized for metal "units"_units.html.
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You can use the SW potential with any LAMMPS units, but you would need
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to create your own EDIP potential file with coefficients listed in the
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appropriate units if your simulation doesn't use "metal" units.
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[Related commands:]
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"pair_coeff"_pair_coeff.html
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[Default:] none
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:line
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:link(EDIP)
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[(EDIP)] J. F. Justo et al., Phys. Rev. B 58, 2539 (1998).
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