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<title>pair_style colloid command — LAMMPS 15 May 2015 version documentation</title>
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<li class="toctree-l1"><a class="reference internal" href="Section_intro.html">1. Introduction</a></li>
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<li>pair_style colloid command</li>
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<div class="section" id="pair-style-colloid-command">
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<span id="index-0"></span><h1>pair_style colloid command<a class="headerlink" href="#pair-style-colloid-command" title="Permalink to this headline">¶</a></h1>
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</div>
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<div class="section" id="pair-style-colloid-gpu-command">
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<h1>pair_style colloid/gpu command<a class="headerlink" href="#pair-style-colloid-gpu-command" title="Permalink to this headline">¶</a></h1>
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</div>
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<div class="section" id="pair-style-colloid-omp-command">
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<h1>pair_style colloid/omp command<a class="headerlink" href="#pair-style-colloid-omp-command" title="Permalink to this headline">¶</a></h1>
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<div class="section" id="syntax">
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<h2>Syntax<a class="headerlink" href="#syntax" title="Permalink to this headline">¶</a></h2>
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<div class="highlight-python"><div class="highlight"><pre>pair_style colloid cutoff
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</pre></div>
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</div>
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<ul class="simple">
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<li>cutoff = global cutoff for colloidal interactions (distance units)</li>
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</ul>
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</div>
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<div class="section" id="examples">
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<h2>Examples<a class="headerlink" href="#examples" title="Permalink to this headline">¶</a></h2>
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<div class="highlight-python"><div class="highlight"><pre>pair_style colloid 10.0
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pair_coeff * * 25 1.0 10.0 10.0
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pair_coeff 1 1 144 1.0 0.0 0.0 3.0
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pair_coeff 1 2 75.398 1.0 0.0 10.0 9.0
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pair_coeff 2 2 39.478 1.0 10.0 10.0 25.0
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</pre></div>
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</div>
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</div>
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<div class="section" id="description">
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<h2>Description<a class="headerlink" href="#description" title="Permalink to this headline">¶</a></h2>
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<p>Style <em>colloid</em> computes pairwise interactions between large colloidal
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particles and small solvent particles using 3 formulas. A colloidal
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particle has a size > sigma; a solvent particle is the usual
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Lennard-Jones particle of size sigma.</p>
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<p>The colloid-colloid interaction energy is given by</p>
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<img alt="_images/pair_colloid_cc.jpg" class="align-center" src="_images/pair_colloid_cc.jpg" />
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<p>where A_cc is the Hamaker constant, a1 and a2 are the radii of the two
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colloidal particles, and Rc is the cutoff. This equation results from
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describing each colloidal particle as an integrated collection of
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Lennard-Jones particles of size sigma and is derived in
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<a class="reference internal" href="pair_resquared.html#everaers"><span>(Everaers)</span></a>.</p>
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<p>The colloid-solvent interaction energy is given by</p>
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<img alt="_images/pair_colloid_cs.jpg" class="align-center" src="_images/pair_colloid_cs.jpg" />
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<p>where A_cs is the Hamaker constant, a is the radius of the colloidal
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particle, and Rc is the cutoff. This formula is derived from the
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colloid-colloid interaction, letting one of the particle sizes go to
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zero.</p>
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<p>The solvent-solvent interaction energy is given by the usual
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Lennard-Jones formula</p>
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<img alt="_images/pair_colloid_ss.jpg" class="align-center" src="_images/pair_colloid_ss.jpg" />
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<p>with A_ss set appropriately, which results from letting both particle
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sizes go to zero.</p>
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<p>When used in combination with <a class="reference internal" href=""><em>pair_style yukawa/colloid</em></a>, the two terms become the so-called
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DLVO potential, which combines electrostatic repulsion and van der
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Waals attraction.</p>
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<p>The following coefficients must be defined for each pair of atoms
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types via the <a class="reference internal" href="pair_coeff.html"><em>pair_coeff</em></a> command as in the examples
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above, or in the data file or restart files read by the
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<a class="reference internal" href="read_data.html"><em>read_data</em></a> or <a class="reference internal" href="read_restart.html"><em>read_restart</em></a>
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commands, or by mixing as described below:</p>
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<ul class="simple">
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<li>A (energy units)</li>
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<li>sigma (distance units)</li>
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<li>d1 (distance units)</li>
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<li>d2 (distance units)</li>
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<li>cutoff (distance units)</li>
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</ul>
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<p>A is the Hamaker energy prefactor and should typically be set as
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follows:</p>
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<ul class="simple">
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<li>A_cc = colloid/colloid = 4 pi^2 = 39.5</li>
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<li>A_cs = colloid/solvent = sqrt(A_cc*A_ss)</li>
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<li>A_ss = solvent/solvent = 144 (assuming epsilon = 1, so that 144/36 = 4)</li>
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</ul>
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<p>Sigma is the size of the solvent particle or the constituent particles
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integrated over in the colloidal particle and should typically be set
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as follows:</p>
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<ul class="simple">
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<li>Sigma_cc = colloid/colloid = 1.0</li>
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<li>Sigma_cs = colloid/solvent = arithmetic mixing between colloid sigma and solvent sigma</li>
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<li>Sigma_ss = solvent/solvent = 1.0 or whatever size the solvent particle is</li>
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</ul>
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<p>Thus typically Sigma_cs = 1.0, unless the solvent particle’s size !=
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1.0.</p>
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<p>D1 and d2 are particle diameters, so that d1 = 2*a1 and d2 = 2*a2 in
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the formulas above. Both d1 and d2 must be values >= 0. If d1 > 0
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and d2 > 0, then the pair interacts via the colloid-colloid formula
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above. If d1 = 0 and d2 = 0, then the pair interacts via the
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solvent-solvent formula. I.e. a d value of 0 is a Lennard-Jones
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particle of size sigma. If either d1 = 0 or d2 = 0 and the other is
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larger, then the pair interacts via the colloid-solvent formula.</p>
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<p>Note that the diameter of a particular particle type may appear in
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multiple pair_coeff commands, as it interacts with other particle
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types. You should insure the particle diameter is specified
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consistently each time it appears.</p>
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<p>The last coefficient is optional. If not specified, the global cutoff
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specified in the pair_style command is used. However, you typically
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want different cutoffs for interactions between different particle
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sizes. E.g. if colloidal particles of diameter 10 are used with
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solvent particles of diameter 1, then a solvent-solvent cutoff of 2.5
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would correspond to a colloid-colloid cutoff of 25. A good
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rule-of-thumb is to use a colloid-solvent cutoff that is half the big
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diameter + 4 times the small diameter. I.e. 9 = 5 + 4 for the
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colloid-solvent cutoff in this case.</p>
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<div class="admonition warning">
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<p class="first admonition-title">Warning</p>
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<p class="last">When using pair_style colloid for a mixture with 2 (or
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more) widely different particles sizes (e.g. sigma=10 colloids in a
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background sigam=1 LJ fluid), you will likely want to use these
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commands for efficiency: <a class="reference internal" href="neighbor.html"><em>neighbor multi</em></a> and
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<a class="reference internal" href="comm_modify.html"><em>comm_modify multi</em></a>.</p>
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</div>
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<hr class="docutils" />
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<p>Styles with a <em>cuda</em>, <em>gpu</em>, <em>intel</em>, <em>kk</em>, <em>omp</em>, or <em>opt</em> suffix are
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functionally the same as the corresponding style without the suffix.
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They have been optimized to run faster, depending on your available
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hardware, as discussed in <a class="reference internal" href="Section_accelerate.html"><em>Section_accelerate</em></a>
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of the manual. The accelerated styles take the same arguments and
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should produce the same results, except for round-off and precision
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issues.</p>
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<p>These accelerated styles are part of the USER-CUDA, GPU, USER-INTEL,
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KOKKOS, USER-OMP and OPT packages, respectively. They are only
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enabled if LAMMPS was built with those packages. See the <a class="reference internal" href="Section_start.html#start-3"><span>Making LAMMPS</span></a> section for more info.</p>
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<p>You can specify the accelerated styles explicitly in your input script
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by including their suffix, or you can use the <a class="reference internal" href="Section_start.html#start-7"><span>-suffix command-line switch</span></a> when you invoke LAMMPS, or you can
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use the <a class="reference internal" href="suffix.html"><em>suffix</em></a> command in your input script.</p>
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<p>See <a class="reference internal" href="Section_accelerate.html"><em>Section_accelerate</em></a> of the manual for
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more instructions on how to use the accelerated styles effectively.</p>
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<hr class="docutils" />
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<p><strong>Mixing, shift, table, tail correction, restart, rRESPA info</strong>:</p>
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<p>For atom type pairs I,J and I != J, the A, sigma, d1, and d2
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coefficients and cutoff distance for this pair style can be mixed. A
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is an energy value mixed like a LJ epsilon. D1 and d2 are distance
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values and are mixed like sigma. The default mix value is
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<em>geometric</em>. See the “pair_modify” command for details.</p>
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<p>This pair style supports the <a class="reference internal" href="pair_modify.html"><em>pair_modify</em></a> shift
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option for the energy of the pair interaction.</p>
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<p>The <a class="reference internal" href="pair_modify.html"><em>pair_modify</em></a> table option is not relevant
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for this pair style.</p>
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<p>This pair style does not support the <a class="reference internal" href="pair_modify.html"><em>pair_modify</em></a>
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tail option for adding long-range tail corrections to energy and
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pressure.</p>
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<p>This pair style writes its information to <a class="reference internal" href="restart.html"><em>binary restart files</em></a>, so pair_style and pair_coeff commands do not need
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to be specified in an input script that reads a restart file.</p>
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<p>This pair style can only be used via the <em>pair</em> keyword of the
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<a class="reference internal" href="run_style.html"><em>run_style respa</em></a> command. It does not support the
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<em>inner</em>, <em>middle</em>, <em>outer</em> keywords.</p>
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</div>
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<hr class="docutils" />
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<div class="section" id="restrictions">
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<h2>Restrictions<a class="headerlink" href="#restrictions" title="Permalink to this headline">¶</a></h2>
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<p>This style is part of the COLLOID package. It is only enabled if
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LAMMPS was built with that package. See the <a class="reference internal" href="Section_start.html#start-3"><span>Making LAMMPS</span></a> section for more info.</p>
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<p>Normally, this pair style should be used with finite-size particles
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which have a diameter, e.g. see the <a class="reference internal" href="atom_style.html"><em>atom_style sphere</em></a> command. However, this is not a requirement,
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since the only definition of particle size is via the pair_coeff
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parameters for each type. In other words, the physical radius of the
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particle is ignored. Thus you should insure that the d1,d2 parameters
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you specify are consistent with the physical size of the particles of
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that type.</p>
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<p>Per-particle polydispersity is not yet supported by this pair style;
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only per-type polydispersity is enabled via the pair_coeff parameters.</p>
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</div>
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<div class="section" id="related-commands">
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<h2>Related commands<a class="headerlink" href="#related-commands" title="Permalink to this headline">¶</a></h2>
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<p><a class="reference internal" href="pair_coeff.html"><em>pair_coeff</em></a></p>
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<p><strong>Default:</strong> none</p>
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<hr class="docutils" />
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<p id="everaers"><strong>(Everaers)</strong> Everaers, Ejtehadi, Phys Rev E, 67, 041710 (2003).</p>
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