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<title>pair_style airebo command — LAMMPS 15 May 2015 version documentation</title>
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<div class="section" id="pair-style-airebo-command">
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<span id="index-0"></span><h1>pair_style airebo command<a class="headerlink" href="#pair-style-airebo-command" title="Permalink to this headline">¶</a></h1>
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</div>
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<div class="section" id="pair-style-airebo-omp-command">
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<h1>pair_style airebo/omp command<a class="headerlink" href="#pair-style-airebo-omp-command" title="Permalink to this headline">¶</a></h1>
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</div>
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<div class="section" id="pair-style-rebo-command">
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<h1>pair_style rebo command<a class="headerlink" href="#pair-style-rebo-command" title="Permalink to this headline">¶</a></h1>
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</div>
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<div class="section" id="pair-style-rebo-omp-command">
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<h1>pair_style rebo/omp command<a class="headerlink" href="#pair-style-rebo-omp-command" title="Permalink to this headline">¶</a></h1>
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<div class="section" id="syntax">
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<h2>Syntax<a class="headerlink" href="#syntax" title="Permalink to this headline">¶</a></h2>
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<div class="highlight-python"><div class="highlight"><pre>pair_style style cutoff LJ_flag TORSION_flag
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</pre></div>
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</div>
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<ul class="simple">
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<li>style = <em>airebo</em> or <em>rebo</em></li>
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<li>cutoff = LJ cutoff (sigma scale factor) (AIREBO only)</li>
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<li>LJ_flag = 0/1 to turn off/on the LJ term (AIREBO only, optional)</li>
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<li>TORSION_flag = 0/1 to turn off/on the torsion term (AIREBO only, optional)</li>
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</ul>
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</div>
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<div class="section" id="examples">
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<h2>Examples<a class="headerlink" href="#examples" title="Permalink to this headline">¶</a></h2>
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<div class="highlight-python"><div class="highlight"><pre>pair_style airebo 3.0
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pair_style airebo 2.5 1 0
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pair_coeff * * ../potentials/CH.airebo H C
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</pre></div>
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</div>
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<div class="highlight-python"><div class="highlight"><pre>pair_style rebo
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pair_coeff * * ../potentials/CH.airebo H C
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</pre></div>
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</div>
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</div>
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<div class="section" id="description">
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<h2>Description<a class="headerlink" href="#description" title="Permalink to this headline">¶</a></h2>
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<p>The <em>airebo</em> pair style computes the Adaptive Intermolecular Reactive
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Empirical Bond Order (AIREBO) Potential of <a class="reference internal" href="#stuart"><span>(Stuart)</span></a> for a
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system of carbon and/or hydrogen atoms. Note that this is the initial
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formulation of AIREBO from 2000, not the later formulation. The
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<em>rebo</em> pair style computes the Reactive Empirical Bond Order (REBO)
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Potential of <a class="reference internal" href="#brenner"><span>(Brenner)</span></a>. Note that this is the so-called
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2nd generation REBO from 2002, not the original REBO from 1990. As
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discussed below, 2nd generation REBO is closely related to the intial
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AIREBO; it is just a subset of the potential energy terms.</p>
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<p>The AIREBO potential consists of three terms:</p>
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<img alt="_images/pair_airebo.jpg" class="align-center" src="_images/pair_airebo.jpg" />
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<p>By default, all three terms are included. For the <em>airebo</em> style, if
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the two optional flag arguments to the pair_style command are
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included, the LJ and torsional terms can be turned off. Note that
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both or neither of the flags must be included. If both of the LJ an
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torsional terms are turned off, it becomes the 2nd-generation REBO
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potential, with a small caveat on the spline fitting procedure
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mentioned below. This can be specified directly as pair_style rebo
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with no additional arguments.</p>
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<p>The detailed formulas for this potential are given in
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<a class="reference internal" href="#stuart"><span>(Stuart)</span></a>; here we provide only a brief description.</p>
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<p>The E_REBO term has the same functional form as the hydrocarbon REBO
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potential developed in <a class="reference internal" href="#brenner"><span>(Brenner)</span></a>. The coefficients for
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E_REBO in AIREBO are essentially the same as Brenner’s potential, but
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a few fitted spline values are slightly different. For most cases the
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E_REBO term in AIREBO will produce the same energies, forces and
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statistical averages as the original REBO potential from which it was
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derived. The E_REBO term in the AIREBO potential gives the model its
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reactive capabilities and only describes short-ranged C-C, C-H and H-H
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interactions (r < 2 Angstroms). These interactions have strong
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coordination-dependence through a bond order parameter, which adjusts
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the attraction between the I,J atoms based on the position of other
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nearby atoms and thus has 3- and 4-body dependence.</p>
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<p>The E_LJ term adds longer-ranged interactions (2 < r < cutoff) using a
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form similar to the standard <a class="reference internal" href="pair_lj.html"><em>Lennard Jones potential</em></a>.
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The E_LJ term in AIREBO contains a series of switching functions so
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that the short-ranged LJ repulsion (1/r^12) does not interfere with
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the energetics captured by the E_REBO term. The extent of the E_LJ
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interactions is determined by the <em>cutoff</em> argument to the pair_style
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command which is a scale factor. For each type pair (C-C, C-H, H-H)
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the cutoff is obtained by multiplying the scale factor by the sigma
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value defined in the potential file for that type pair. In the
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standard AIREBO potential, sigma_CC = 3.4 Angstroms, so with a scale
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factor of 3.0 (the argument in pair_style), the resulting E_LJ cutoff
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would be 10.2 Angstroms.</p>
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<p>The E_TORSION term is an explicit 4-body potential that describes
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various dihedral angle preferences in hydrocarbon configurations.</p>
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<hr class="docutils" />
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<p>Only a single pair_coeff command is used with the <em>airebo</em> or <em>rebo</em>
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style which specifies an AIREBO potential file with parameters for C
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and H. Note that the <em>rebo</em> style in LAMMPS uses the same
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AIREBO-formatted potential file. These are mapped to LAMMPS atom
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types by specifying N additional arguments after the filename in the
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pair_coeff command, where N is the number of LAMMPS atom types:</p>
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<ul class="simple">
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<li>filename</li>
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<li>N element names = mapping of AIREBO elements to atom types</li>
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</ul>
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<p>See the <a class="reference internal" href="pair_coeff.html"><em>pair_coeff</em></a> doc page for alternate ways
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to specify the path for the potential file.</p>
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<p>As an example, if your LAMMPS simulation has 4 atom types and you want
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the 1st 3 to be C, and the 4th to be H, you would use the following
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pair_coeff command:</p>
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<div class="highlight-python"><div class="highlight"><pre>pair_coeff * * CH.airebo C C C H
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</pre></div>
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</div>
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<p>The 1st 2 arguments must be * * so as to span all LAMMPS atom types.
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The first three C arguments map LAMMPS atom types 1,2,3 to the C
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element in the AIREBO file. The final H argument maps LAMMPS atom
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type 4 to the H element in the SW file. If a mapping value is
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specified as NULL, the mapping is not performed. This can be used
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when a <em>airebo</em> potential is used as part of the <em>hybrid</em> pair style.
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The NULL values are placeholders for atom types that will be used with
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other potentials.</p>
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<p>The parameters/coefficients for the AIREBO potentials are listed in
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the CH.airebo file to agree with the original <a class="reference internal" href="#stuart"><span>(Stuart)</span></a>
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paper. Thus the parameters are specific to this potential and the way
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it was fit, so modifying the file should be done cautiously.</p>
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<hr class="docutils" />
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<p>Styles with a <em>cuda</em>, <em>gpu</em>, <em>intel</em>, <em>kk</em>, <em>omp</em>, or <em>opt</em> suffix are
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functionally the same as the corresponding style without the suffix.
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They have been optimized to run faster, depending on your available
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hardware, as discussed in <a class="reference internal" href="Section_accelerate.html"><em>Section_accelerate</em></a>
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of the manual. The accelerated styles take the same arguments and
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should produce the same results, except for round-off and precision
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issues.</p>
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<p>These accelerated styles are part of the USER-CUDA, GPU, USER-INTEL,
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KOKKOS, USER-OMP and OPT packages, respectively. They are only
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enabled if LAMMPS was built with those packages. See the <a class="reference internal" href="Section_start.html#start-3"><span>Making LAMMPS</span></a> section for more info.</p>
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<p>You can specify the accelerated styles explicitly in your input script
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by including their suffix, or you can use the <a class="reference internal" href="Section_start.html#start-7"><span>-suffix command-line switch</span></a> when you invoke LAMMPS, or you can
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use the <a class="reference internal" href="suffix.html"><em>suffix</em></a> command in your input script.</p>
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<p>See <a class="reference internal" href="Section_accelerate.html"><em>Section_accelerate</em></a> of the manual for
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more instructions on how to use the accelerated styles effectively.</p>
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<hr class="docutils" />
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<p><strong>Mixing, shift, table, tail correction, restart, rRESPA info</strong>:</p>
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<p>These pair styles do not support the <a class="reference internal" href="pair_modify.html"><em>pair_modify</em></a>
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mix, shift, table, and tail options.</p>
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<p>These pair styles do not write their information to <a class="reference internal" href="restart.html"><em>binary restart files</em></a>, since it is stored in potential files. Thus, you
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need to re-specify the pair_style and pair_coeff commands in an input
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script that reads a restart file.</p>
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<p>These pair styles can only be used via the <em>pair</em> keyword of the
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<a class="reference internal" href="run_style.html"><em>run_style respa</em></a> command. They do not support the
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<em>inner</em>, <em>middle</em>, <em>outer</em> keywords.</p>
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</div>
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<div class="section" id="restrictions">
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<h2>Restrictions<a class="headerlink" href="#restrictions" title="Permalink to this headline">¶</a></h2>
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<p>These pair styles are part of the MANYBODY package. They are only
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enabled if LAMMPS was built with that package (which it is by
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default). See the <a class="reference internal" href="Section_start.html#start-3"><span>Making LAMMPS</span></a> section
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for more info.</p>
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<p>These pair potentials require the <a class="reference internal" href="newton.html"><em>newton</em></a> setting to be
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“on” for pair interactions.</p>
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<p>The CH.airebo potential file provided with LAMMPS (see the potentials
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directory) is parameterized for metal <a class="reference internal" href="units.html"><em>units</em></a>. You can use
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the AIREBO or REBO potential with any LAMMPS units, but you would need
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to create your own AIREBO potential file with coefficients listed in
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the appropriate units if your simulation doesn’t use “metal” units.</p>
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</div>
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<div class="section" id="related-commands">
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<h2>Related commands<a class="headerlink" href="#related-commands" title="Permalink to this headline">¶</a></h2>
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<p><a class="reference internal" href="pair_coeff.html"><em>pair_coeff</em></a></p>
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<p><strong>Default:</strong> none</p>
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<hr class="docutils" />
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<p id="stuart"><strong>(Stuart)</strong> Stuart, Tutein, Harrison, J Chem Phys, 112, 6472-6486
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(2000).</p>
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<p id="brenner"><strong>(Brenner)</strong> Brenner, Shenderova, Harrison, Stuart, Ni, Sinnott, J
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Physics: Condensed Matter, 14, 783-802 (2002).</p>
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