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lammps/lib/gpu/lal_base_three.cpp

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/***************************************************************************
base_three.cpp
-------------------
W. Michael Brown (ORNL)
Base class for pair styles with per-particle data for position and type
__________________________________________________________________________
This file is part of the LAMMPS Accelerator Library (LAMMPS_AL)
__________________________________________________________________________
begin : Tue April 2, 2013
email : brownw@ornl.gov
***************************************************************************/
#include "lal_base_three.h"
using namespace LAMMPS_AL;
#define BaseThreeT BaseThree<numtyp, acctyp>
extern Device<PRECISION,ACC_PRECISION> global_device;
template <class numtyp, class acctyp>
BaseThreeT::BaseThree() : _compiled(false), _max_bytes(0) {
device=&global_device;
ans=new Answer<numtyp,acctyp>();
nbor=new Neighbor();
#ifdef THREE_CONCURRENT
ans2=new Answer<numtyp,acctyp>();
#endif
}
template <class numtyp, class acctyp>
BaseThreeT::~BaseThree() {
delete ans;
delete nbor;
#ifdef THREE_CONCURRENT
delete ans2;
#endif
}
template <class numtyp, class acctyp>
int BaseThreeT::bytes_per_atom_atomic(const int max_nbors) const {
int b=device->atom.bytes_per_atom()+ans->bytes_per_atom()+
nbor->bytes_per_atom(max_nbors);
#ifdef THREE_CONCURRENT
b+=ans2->bytes_per_atom();
#endif
return b;
}
template <class numtyp, class acctyp>
int BaseThreeT::init_three(const int nlocal, const int nall,
const int max_nbors, const int maxspecial,
const double cell_size, const double gpu_split,
FILE *_screen, const void *pair_program,
const char *two, const char *three_center,
const char *three_end, const char *short_nbor) {
screen=_screen;
int gpu_nbor=0;
if (device->gpu_mode()==Device<numtyp,acctyp>::GPU_NEIGH)
gpu_nbor=1;
else if (device->gpu_mode()==Device<numtyp,acctyp>::GPU_HYB_NEIGH)
gpu_nbor=2;
_gpu_nbor=gpu_nbor;
int _gpu_host=0;
int host_nlocal=hd_balancer.first_host_count(nlocal,gpu_split,gpu_nbor);
if (host_nlocal>0)
_gpu_host=1;
_threads_per_atom=device->threads_per_atom();
if (_threads_per_atom>1 && gpu_nbor==0) { // neigh no and tpa > 1
nbor->packing(true);
_nbor_data=&(nbor->dev_packed);
} else // neigh yes or tpa == 1
_nbor_data=&(nbor->dev_nbor);
if (_threads_per_atom*_threads_per_atom>device->warp_size())
return -10;
int success=device->init(*ans,false,false,nlocal,host_nlocal,nall,nbor,
maxspecial,_gpu_host,max_nbors,cell_size,false,
_threads_per_atom);
if (success!=0)
return success;
ucl_device=device->gpu;
atom=&device->atom;
#ifdef THREE_CONCURRENT
_end_command_queue=ucl_device->num_queues();
ucl_device->push_command_queue();
if (!ans2->init(ans->max_inum(),false,false,*(device->gpu)))
return -3;
ans2->cq(_end_command_queue);
#endif
_block_pair=device->pair_block_size();
_block_size=device->block_ellipse();
compile_kernels(*ucl_device,pair_program,two,three_center,three_end,short_nbor);
// Initialize host-device load balancer
hd_balancer.init(device,gpu_nbor,gpu_split);
// Initialize timers for the selected GPU
time_pair.init(*ucl_device);
time_pair.zero();
pos_tex.bind_float(atom->x,4);
_max_an_bytes=ans->gpu_bytes()+nbor->gpu_bytes();
#ifdef THREE_CONCURRENT
_max_an_bytes+=ans2->gpu_bytes();
#endif
int ef_nall=nall;
if (ef_nall==0)
ef_nall=2000;
dev_short_nbor.alloc(ef_nall*(2+max_nbors),*(this->ucl_device),UCL_READ_WRITE);
return 0;
}
template <class numtyp, class acctyp>
void BaseThreeT::estimate_gpu_overhead() {
device->estimate_gpu_overhead(1,_gpu_overhead,_driver_overhead);
}
template <class numtyp, class acctyp>
void BaseThreeT::clear_atomic() {
// Output any timing information
acc_timers();
double avg_split=hd_balancer.all_avg_split();
_gpu_overhead*=hd_balancer.timestep();
_driver_overhead*=hd_balancer.timestep();
device->output_times(time_pair,*ans,*nbor,avg_split,_max_bytes+_max_an_bytes,
_gpu_overhead,_driver_overhead,_threads_per_atom,screen);
if (_compiled) {
k_three_center.clear();
k_three_end.clear();
k_three_end_vatom.clear();
k_pair.clear();
k_short_nbor.clear();
delete pair_program;
_compiled=false;
}
time_pair.clear();
hd_balancer.clear();
dev_short_nbor.clear();
nbor->clear();
ans->clear();
#ifdef THREE_CONCURRENT
ans2->clear();
assert(ucl_device->num_queues()==_end_command_queue+1);
// ucl_device will clean up the command queue in its destructor
// ucl_device->pop_command_queue();
#endif
device->clear();
}
// ---------------------------------------------------------------------------
// Copy neighbor list from host
// ---------------------------------------------------------------------------
template <class numtyp, class acctyp>
int * BaseThreeT::reset_nbors(const int nall, const int inum, const int nlist,
int *ilist, int *numj, int **firstneigh,
bool &success) {
success=true;
int mn=nbor->max_nbor_loop(nlist,numj,ilist);
resize_atom(inum,nall,success);
resize_local(nall,mn,success);
if (!success)
return NULL;
_nall = nall;
// originally the requirement that nall == nlist was enforced
// to allow direct indexing neighbors of neighbors after re-arrangement
// nbor->get_host3(nall,nlist,ilist,numj,firstneigh,block_size());
// now the requirement is removed, allowing to work within pair hybrid
nbor->get_host(nlist,ilist,numj,firstneigh,block_size());
double bytes=ans->gpu_bytes()+nbor->gpu_bytes();
#ifdef THREE_CONCURRENT
bytes+=ans2->gpu_bytes();
#endif
if (bytes>_max_an_bytes)
_max_an_bytes=bytes;
return ilist;
}
// ---------------------------------------------------------------------------
// Build neighbor list on device
// ---------------------------------------------------------------------------
template <class numtyp, class acctyp>
inline int BaseThreeT::build_nbor_list(const int inum, const int host_inum,
const int nall, double **host_x,
int *host_type, double *sublo,
double *subhi, tagint *tag,
int **nspecial, tagint **special,
bool &success) {
success=true;
resize_atom(inum,nall,success);
resize_local(nall,host_inum,nbor->max_nbors(),success);
if (!success)
return 0;
atom->cast_copy_x(host_x,host_type);
_nall = nall;
int mn;
nbor->build_nbor_list(host_x, nall, host_inum, nall, *atom, sublo, subhi, tag,
nspecial, special, success, mn);
double bytes=ans->gpu_bytes()+nbor->gpu_bytes();
#ifdef THREE_CONCURRENT
bytes+=ans2->gpu_bytes();
#endif
if (bytes>_max_an_bytes)
_max_an_bytes=bytes;
return mn;
}
// ---------------------------------------------------------------------------
// Copy nbor list from host if necessary and then calculate forces, virials,..
// ---------------------------------------------------------------------------
template <class numtyp, class acctyp>
void BaseThreeT::compute(const int f_ago, const int inum_full, const int nall,
const int nlist, double **host_x, int *host_type,
int *ilist, int *numj, int **firstneigh,
const bool eflag, const bool vflag, const bool eatom,
const bool vatom, int &host_start,
const double cpu_time, bool &success) {
acc_timers();
if (inum_full==0) {
host_start=0;
// Make sure textures are correct if realloc by a different hybrid style
resize_atom(0,nall,success);
zero_timers();
return;
}
int ago=hd_balancer.ago_first(f_ago);
int inum=hd_balancer.balance(ago,inum_full,cpu_time);
ans->inum(inum);
#ifdef THREE_CONCURRENT
ans2->inum(inum);
#endif
host_start=inum;
if (ago==0) {
reset_nbors(nall, inum, nlist, ilist, numj, firstneigh, success);
if (!success)
return;
_max_nbors = nbor->max_nbor_loop(nlist,numj,ilist);
}
atom->cast_x_data(host_x,host_type);
hd_balancer.start_timer();
atom->add_x_data(host_x,host_type);
// re-allocate dev_short_nbor if necessary
if (nall*(2+_max_nbors) > dev_short_nbor.cols()) {
int _nmax=static_cast<int>(static_cast<double>(nall)*1.10);
dev_short_nbor.resize((2+_max_nbors)*_nmax);
}
// _ainum to be used in loop() for short neighbor list build
_ainum = nlist;
int evatom=0;
if (eatom || vatom)
evatom=1;
#ifdef THREE_CONCURRENT
ucl_device->sync();
#endif
loop(eflag,vflag,evatom);
ans->copy_answers(eflag,vflag,eatom,vatom,ilist);
device->add_ans_object(ans);
#ifdef THREE_CONCURRENT
ans2->copy_answers(eflag,vflag,eatom,vatom,ilist);
device->add_ans_object(ans2);
#endif
hd_balancer.stop_timer();
}
// ---------------------------------------------------------------------------
// Reneighbor on GPU if necessary and then compute forces, virials, energies
// ---------------------------------------------------------------------------
template <class numtyp, class acctyp>
int ** BaseThreeT::compute(const int ago, const int inum_full,
const int nall, double **host_x, int *host_type,
double *sublo, double *subhi, tagint *tag,
int **nspecial, tagint **special, const bool eflag,
const bool vflag, const bool eatom,
const bool vatom, int &host_start,
int **ilist, int **jnum,
const double cpu_time, bool &success) {
acc_timers();
if (inum_full==0) {
host_start=0;
// Make sure textures are correct if realloc by a different hybrid style
resize_atom(0,nall,success);
zero_timers();
return NULL;
}
hd_balancer.balance(cpu_time);
int inum=hd_balancer.get_gpu_count(ago,inum_full);
ans->inum(inum);
#ifdef THREE_CONCURRENT
ans2->inum(inum);
#endif
host_start=inum;
// Build neighbor list on GPU if necessary
if (ago==0) {
_max_nbors = build_nbor_list(inum, inum_full-inum, nall, host_x, host_type,
sublo, subhi, tag, nspecial, special, success);
if (!success)
return NULL;
hd_balancer.start_timer();
} else {
atom->cast_x_data(host_x,host_type);
hd_balancer.start_timer();
atom->add_x_data(host_x,host_type);
}
*ilist=nbor->host_ilist.begin();
*jnum=nbor->host_acc.begin();
// re-allocate dev_short_nbor if necessary
if (nall*(2+_max_nbors) > dev_short_nbor.cols()) {
int _nmax=static_cast<int>(static_cast<double>(nall)*1.10);
dev_short_nbor.resize((2+_max_nbors)*_nmax);
}
// _ainum to be used in loop() for short neighbor list build
_ainum = nall;
int evatom=0;
if (eatom || vatom)
evatom=1;
#ifdef THREE_CONCURRENT
ucl_device->sync();
#endif
loop(eflag,vflag,evatom);
ans->copy_answers(eflag,vflag,eatom,vatom);
device->add_ans_object(ans);
#ifdef THREE_CONCURRENT
ans2->copy_answers(eflag,vflag,eatom,vatom);
device->add_ans_object(ans2);
#endif
hd_balancer.stop_timer();
return nbor->host_jlist.begin()-host_start;
}
template <class numtyp, class acctyp>
double BaseThreeT::host_memory_usage_atomic() const {
return device->atom.host_memory_usage()+nbor->host_memory_usage()+
4*sizeof(numtyp)+sizeof(BaseThree<numtyp,acctyp>);
}
template <class numtyp, class acctyp>
void BaseThreeT::compile_kernels(UCL_Device &dev, const void *pair_str,
const char *two, const char *three_center,
const char *three_end, const char* short_nbor) {
if (_compiled)
return;
std::string vatom_name=std::string(three_end)+"_vatom";
pair_program=new UCL_Program(dev);
pair_program->load_string(pair_str,device->compile_string().c_str());
k_three_center.set_function(*pair_program,three_center);
k_three_end.set_function(*pair_program,three_end);
k_three_end_vatom.set_function(*pair_program,vatom_name.c_str());
k_pair.set_function(*pair_program,two);
k_short_nbor.set_function(*pair_program,short_nbor);
pos_tex.get_texture(*pair_program,"pos_tex");
#ifdef THREE_CONCURRENT
k_three_end.cq(ucl_device->cq(_end_command_queue));
k_three_end_vatom.cq(ucl_device->cq(_end_command_queue));
#endif
_compiled=true;
}
template class BaseThree<PRECISION,ACC_PRECISION>;
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