forked from lijiext/lammps
2409 lines
51 KiB
HTML
2409 lines
51 KiB
HTML
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<!DOCTYPE html>
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<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
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<meta charset="utf-8">
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<meta name="viewport" content="width=device-width, initial-scale=1.0">
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<title>Index — LAMMPS documentation</title>
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<link rel="top" title="LAMMPS documentation" href="index.html"/>
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</head>
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<div class="wy-side-nav-search">
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<a href="Manual.html" class="icon icon-home"> LAMMPS
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</a>
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<div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
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<p class="caption"><span class="caption-text">User Documentation</span></p>
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<ul>
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<li class="toctree-l1"><a class="reference internal" href="Section_intro.html">1. Introduction</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_start.html">2. Getting Started</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_commands.html">3. Commands</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_packages.html">4. Packages</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_accelerate.html">5. Accelerating LAMMPS performance</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_howto.html">6. How-to discussions</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_example.html">7. Example problems</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_perf.html">8. Performance & scalability</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_tools.html">9. Additional tools</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_modify.html">10. Modifying & extending LAMMPS</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_python.html">11. Python interface to LAMMPS</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_errors.html">12. Errors</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_history.html">13. Future and history</a></li>
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</ul>
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<p class="caption"><span class="caption-text">Index</span></p>
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<ul>
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<li class="toctree-l1"><a class="reference internal" href="tutorials.html">Tutorials</a></li>
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<li class="toctree-l1"><a class="reference internal" href="commands.html">Commands</a></li>
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<li class="toctree-l1"><a class="reference internal" href="fixes.html">Fixes</a></li>
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<li class="toctree-l1"><a class="reference internal" href="computes.html">Computes</a></li>
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<li class="toctree-l1"><a class="reference internal" href="pairs.html">Pair Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="bonds.html">Bonds</a></li>
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<li class="toctree-l1"><a class="reference internal" href="angles.html">Angle Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="dihedrals.html">Dihedral Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="impropers.html">Improper Styles</a></li>
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</ul>
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</div>
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</nav>
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<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
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<nav class="wy-nav-top" role="navigation" aria-label="top navigation">
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<i data-toggle="wy-nav-top" class="fa fa-bars"></i>
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<a href="Manual.html">LAMMPS</a>
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</nav>
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<ul class="wy-breadcrumbs">
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<li></li>
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<li class="wy-breadcrumbs-aside">
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<a href="http://lammps.sandia.gov">Website</a>
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<a href="Section_commands.html#comm">Commands</a>
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</li>
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</ul>
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<hr/>
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</div>
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<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
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<div itemprop="articleBody">
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<h1 id="index">Index</h1>
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<div class="genindex-jumpbox">
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<a href="#A"><strong>A</strong></a>
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| <a href="#B"><strong>B</strong></a>
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| <a href="#C"><strong>C</strong></a>
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| <a href="#D"><strong>D</strong></a>
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| <a href="#E"><strong>E</strong></a>
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| <a href="#F"><strong>F</strong></a>
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| <a href="#G"><strong>G</strong></a>
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| <a href="#I"><strong>I</strong></a>
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| <a href="#J"><strong>J</strong></a>
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| <a href="#K"><strong>K</strong></a>
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| <a href="#L"><strong>L</strong></a>
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| <a href="#M"><strong>M</strong></a>
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| <a href="#N"><strong>N</strong></a>
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| <a href="#P"><strong>P</strong></a>
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| <a href="#Q"><strong>Q</strong></a>
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| <a href="#R"><strong>R</strong></a>
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| <a href="#S"><strong>S</strong></a>
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| <a href="#T"><strong>T</strong></a>
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| <a href="#U"><strong>U</strong></a>
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| <a href="#V"><strong>V</strong></a>
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| <a href="#W"><strong>W</strong></a>
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</div>
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<h2 id="A">A</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%" valign="top"><dl>
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<dt><a href="angle_coeff.html#index-0">angle\_coeff</a>
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</dt>
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<dt><a href="angle_style.html#index-0">angle\_style</a>
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</dt>
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<dt><a href="angle_charmm.html#index-0">angle\_style charmm</a>
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</dt>
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<dt><a href="angle_class2.html#index-0">angle\_style class2</a>
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</dt>
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<dt><a href="angle_cosine.html#index-0">angle\_style cosine</a>
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</dt>
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<dt><a href="angle_cosine_delta.html#index-0">angle\_style cosine/delta</a>
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</dt>
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<dt><a href="angle_cosine_periodic.html#index-0">angle\_style cosine/periodic</a>
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</dt>
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<dt><a href="angle_cosine_shift.html#index-0">angle\_style cosine/shift</a>
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</dt>
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<dt><a href="angle_cosine_shift_exp.html#index-0">angle\_style cosine/shift/exp</a>
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</dt>
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<dt><a href="angle_cosine_squared.html#index-0">angle\_style cosine/squared</a>
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</dt>
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<dt><a href="angle_dipole.html#index-0">angle\_style dipole</a>
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</dt>
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</dl></td>
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<td style="width: 33%" valign="top"><dl>
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<dt><a href="angle_fourier.html#index-0">angle\_style fourier</a>
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</dt>
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<dt><a href="angle_fourier_simple.html#index-0">angle\_style fourier/simple</a>
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</dt>
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<dt><a href="angle_harmonic.html#index-0">angle\_style harmonic</a>
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</dt>
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<dt><a href="angle_hybrid.html#index-0">angle\_style hybrid</a>
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</dt>
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<dt><a href="angle_none.html#index-0">angle\_style none</a>
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</dt>
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<dt><a href="angle_quartic.html#index-0">angle\_style quartic</a>
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</dt>
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<dt><a href="angle_sdk.html#index-0">angle\_style sdk</a>
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</dt>
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<dt><a href="angle_table.html#index-0">angle\_style table</a>
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</dt>
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<dt><a href="angle_zero.html#index-0">angle\_style zero</a>
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</dt>
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<dt><a href="atom_modify.html#index-0">atom\_modify</a>
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</dt>
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<dt><a href="atom_style.html#index-0">atom\_style</a>
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</dt>
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</dl></td>
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</tr></table>
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<h2 id="B">B</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%" valign="top"><dl>
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<dt><a href="balance.html#index-0">balance</a>
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</dt>
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<dt><a href="bond_coeff.html#index-0">bond\_coeff</a>
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</dt>
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<dt><a href="bond_style.html#index-0">bond\_style</a>
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</dt>
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<dt><a href="bond_class2.html#index-0">bond\_style class2</a>
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</dt>
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<dt><a href="bond_fene.html#index-0">bond\_style fene</a>
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</dt>
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<dt><a href="bond_fene_expand.html#index-0">bond\_style fene/expand</a>
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</dt>
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<dt><a href="bond_harmonic.html#index-0">bond\_style harmonic</a>
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</dt>
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<dt><a href="bond_harmonic_shift.html#index-0">bond\_style harmonic/shift</a>
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</dt>
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<dt><a href="bond_harmonic_shift_cut.html#index-0">bond\_style harmonic/shift/cut</a>
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</dt>
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<dt><a href="bond_hybrid.html#index-0">bond\_style hybrid</a>
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</dt>
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</dl></td>
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<td style="width: 33%" valign="top"><dl>
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<dt><a href="bond_morse.html#index-0">bond\_style morse</a>
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</dt>
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<dt><a href="bond_none.html#index-0">bond\_style none</a>
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</dt>
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<dt><a href="bond_nonlinear.html#index-0">bond\_style nonlinear</a>
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</dt>
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<dt><a href="bond_quartic.html#index-0">bond\_style quartic</a>
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</dt>
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<dt><a href="bond_table.html#index-0">bond\_style table</a>
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</dt>
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<dt><a href="bond_zero.html#index-0">bond\_style zero</a>
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</dt>
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<dt><a href="bond_write.html#index-0">bond\_write</a>
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</dt>
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<dt><a href="boundary.html#index-0">boundary</a>
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</dt>
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<dt><a href="box.html#index-0">box</a>
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</dt>
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</dl></td>
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</tr></table>
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<h2 id="C">C</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%" valign="top"><dl>
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<dt><a href="change_box.html#index-0">change\_box</a>
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</dt>
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<dt><a href="clear.html#index-0">clear</a>
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</dt>
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<dt><a href="comm_modify.html#index-0">comm\_modify</a>
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</dt>
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<dt><a href="comm_style.html#index-0">comm\_style</a>
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</dt>
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<dt><a href="compute.html#index-0">compute</a>
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</dt>
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<dt><a href="compute_ackland_atom.html#index-0">compute ackland/atom</a>
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</dt>
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<dt><a href="compute_angle.html#index-0">compute angle</a>
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</dt>
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<dt><a href="compute_angle_local.html#index-0">compute angle/local</a>
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</dt>
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<dt><a href="compute_angmom_chunk.html#index-0">compute angmom/chunk</a>
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</dt>
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<dt><a href="compute_basal_atom.html#index-0">compute basal/atom</a>
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</dt>
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<dt><a href="compute_body_local.html#index-0">compute body/local</a>
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</dt>
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<dt><a href="compute_bond.html#index-0">compute bond</a>
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</dt>
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<dt><a href="compute_bond_local.html#index-0">compute bond/local</a>
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</dt>
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<dt><a href="compute_centro_atom.html#index-0">compute centro/atom</a>
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</dt>
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<dt><a href="compute_chunk_atom.html#index-0">compute chunk/atom</a>
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</dt>
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<dt><a href="compute_cluster_atom.html#index-0">compute cluster/atom</a>
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</dt>
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<dt><a href="compute_cna_atom.html#index-0">compute cna/atom</a>
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</dt>
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<dt><a href="compute_com.html#index-0">compute com</a>
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</dt>
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<dt><a href="compute_com_chunk.html#index-0">compute com/chunk</a>
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</dt>
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<dt><a href="compute_contact_atom.html#index-0">compute contact/atom</a>
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</dt>
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<dt><a href="compute_coord_atom.html#index-0">compute coord/atom</a>
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</dt>
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<dt><a href="compute_damage_atom.html#index-0">compute damage/atom</a>
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</dt>
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<dt><a href="compute_dihedral.html#index-0">compute dihedral</a>
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</dt>
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<dt><a href="compute_dihedral_local.html#index-0">compute dihedral/local</a>
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</dt>
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<dt><a href="compute_dilatation_atom.html#index-0">compute dilatation/atom</a>
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</dt>
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<dt><a href="compute_dipole_chunk.html#index-0">compute dipole/chunk</a>
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</dt>
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<dt><a href="compute_displace_atom.html#index-0">compute displace/atom</a>
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</dt>
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<dt><a href="compute_dpd.html#index-0">compute dpd</a>
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</dt>
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<dt><a href="compute_dpd_atom.html#index-0">compute dpd/atom</a>
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</dt>
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<dt><a href="compute_erotate_asphere.html#index-0">compute erotate/asphere</a>
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</dt>
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<dt><a href="compute_erotate_rigid.html#index-0">compute erotate/rigid</a>
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</dt>
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<dt><a href="compute_erotate_sphere.html#index-0">compute erotate/sphere</a>
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</dt>
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<dt><a href="compute_erotate_sphere_atom.html#index-0">compute erotate/sphere/atom</a>
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</dt>
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<dt><a href="compute_event_displace.html#index-0">compute event/displace</a>
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</dt>
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<dt><a href="compute_fep.html#index-0">compute fep</a>
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</dt>
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<dt><a href="compute_tally.html#index-0">compute force/tally</a>
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</dt>
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<dt><a href="compute_group_group.html#index-0">compute group/group</a>
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</dt>
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<dt><a href="compute_gyration.html#index-0">compute gyration</a>
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</dt>
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<dt><a href="compute_gyration_chunk.html#index-0">compute gyration/chunk</a>
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</dt>
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<dt><a href="compute_heat_flux.html#index-0">compute heat/flux</a>
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</dt>
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<dt><a href="compute_hexorder_atom.html#index-0">compute hexorder/atom</a>
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</dt>
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<dt><a href="compute_improper.html#index-0">compute improper</a>
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</dt>
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<dt><a href="compute_improper_local.html#index-0">compute improper/local</a>
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</dt>
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<dt><a href="compute_inertia_chunk.html#index-0">compute inertia/chunk</a>
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</dt>
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<dt><a href="compute_ke.html#index-0">compute ke</a>
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|
</dt>
|
|
|
|
|
|
<dt><a href="compute_ke_atom.html#index-0">compute ke/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_ke_atom_eff.html#index-0">compute ke/atom/eff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_ke_eff.html#index-0">compute ke/eff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_ke_rigid.html#index-0">compute ke/rigid</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_meso_e_atom.html#index-0">compute meso/e/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_meso_rho_atom.html#index-0">compute meso/rho/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_meso_t_atom.html#index-0">compute meso/t/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_msd.html#index-0">compute msd</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_msd_chunk.html#index-0">compute msd/chunk</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_msd_nongauss.html#index-0">compute msd/nongauss</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_omega_chunk.html#index-0">compute omega/chunk</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_orientorder_atom.html#index-0">compute orientorder/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_pair.html#index-0">compute pair</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_pair_local.html#index-0">compute pair/local</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_pe.html#index-0">compute pe</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="compute_pe_atom.html#index-0">compute pe/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_plasticity_atom.html#index-0">compute plasticity/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_pressure.html#index-0">compute pressure</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_property_atom.html#index-0">compute property/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_property_chunk.html#index-0">compute property/chunk</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_property_local.html#index-0">compute property/local</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_rdf.html#index-0">compute rdf</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_reduce.html#index-0">compute reduce</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_rigid_local.html#index-0">compute rigid/local</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_saed.html#index-0">compute saed</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_slice.html#index-0">compute slice</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_contact_radius.html#index-0">compute smd/contact/radius</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_damage.html#index-0">compute smd/damage</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_hourglass_error.html#index-0">compute smd/hourglass/error</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_internal_energy.html#index-0">compute smd/internal/energy</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_plastic_strain.html#index-0">compute smd/plastic/strain</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_plastic_strain_rate.html#index-0">compute smd/plastic/strain/rate</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_rho.html#index-0">compute smd/rho</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_tlsph_defgrad.html#index-0">compute smd/tlsph/defgrad</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_tlsph_dt.html#index-0">compute smd/tlsph/dt</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_tlsph_num_neighs.html#index-0">compute smd/tlsph/num/neighs</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_tlsph_shape.html#index-0">compute smd/tlsph/shape</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_tlsph_strain.html#index-0">compute smd/tlsph/strain</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_tlsph_strain_rate.html#index-0">compute smd/tlsph/strain/rate</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_tlsph_stress.html#index-0">compute smd/tlsph/stress</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_ulsph_num_neighs.html#index-0">compute smd/ulsph/num/neighs</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_ulsph_strain.html#index-0">compute smd/ulsph/strain</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_ulsph_strain_rate.html#index-0">compute smd/ulsph/strain/rate</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_ulsph_stress.html#index-0">compute smd/ulsph/stress</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_smd_vol.html#index-0">compute smd/vol</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_sna_atom.html#index-0">compute sna/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_stress_atom.html#index-0">compute stress/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp.html#index-0">compute temp</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_asphere.html#index-0">compute temp/asphere</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_body.html#index-0">compute temp/body</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_chunk.html#index-0">compute temp/chunk</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_com.html#index-0">compute temp/com</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_cs.html#index-0">compute temp/cs</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_deform.html#index-0">compute temp/deform</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_deform_eff.html#index-0">compute temp/deform/eff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_drude.html#index-0">compute temp/drude</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_eff.html#index-0">compute temp/eff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_partial.html#index-0">compute temp/partial</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_profile.html#index-0">compute temp/profile</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_ramp.html#index-0">compute temp/ramp</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_region.html#index-0">compute temp/region</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_region_eff.html#index-0">compute temp/region/eff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_rotate.html#index-0">compute temp/rotate</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_temp_sphere.html#index-0">compute temp/sphere</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_ti.html#index-0">compute ti</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_torque_chunk.html#index-0">compute torque/chunk</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_vacf.html#index-0">compute vacf</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_vcm_chunk.html#index-0">compute vcm/chunk</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_voronoi_atom.html#index-0">compute voronoi/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_xrd.html#index-0">compute xrd</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="compute_modify.html#index-0">compute\_modify</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="create_atoms.html#index-0">create\_atoms</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="create_bonds.html#index-0">create\_bonds</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="create_box.html#index-0">create\_box</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="D">D</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="delete_atoms.html#index-0">delete\_atoms</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="delete_bonds.html#index-0">delete\_bonds</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dielectric.html#index-0">dielectric</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_coeff.html#index-0">dihedral\_coeff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_style.html#index-0">dihedral\_style</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_charmm.html#index-0">dihedral\_style charmm</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_class2.html#index-0">dihedral\_style class2</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_cosine_shift_exp.html#index-0">dihedral\_style cosine/shift/exp</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_fourier.html#index-0">dihedral\_style fourier</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_harmonic.html#index-0">dihedral\_style harmonic</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_helix.html#index-0">dihedral\_style helix</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_hybrid.html#index-0">dihedral\_style hybrid</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_multi_harmonic.html#index-0">dihedral\_style multi/harmonic</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_nharmonic.html#index-0">dihedral\_style nharmonic</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="dihedral_none.html#index-0">dihedral\_style none</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_opls.html#index-0">dihedral\_style opls</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_quadratic.html#index-0">dihedral\_style quadratic</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_spherical.html#index-0">dihedral\_style spherical</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_table.html#index-0">dihedral\_style table</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dihedral_zero.html#index-0">dihedral\_style zero</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dimension.html#index-0">dimension</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="displace_atoms.html#index-0">displace\_atoms</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dump.html#index-0">dump</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dump_custom_vtk.html#index-0">dump custom/vtk</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dump_h5md.html#index-0">dump h5md</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dump_image.html#index-0">dump image</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dump_molfile.html#index-0">dump molfile</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="dump_modify.html#index-0">dump\_modify</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="E">E</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="echo.html#index-0">echo</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="F">F</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="fix.html#index-0">fix</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_adapt.html#index-0">fix adapt</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_adapt_fep.html#index-0">fix adapt/fep</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_addforce.html#index-0">fix addforce</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_addtorque.html#index-0">fix addtorque</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_append_atoms.html#index-0">fix append/atoms</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_atc.html#index-0">fix atc</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_atom_swap.html#index-0">fix atom/swap</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_ave_atom.html#index-0">fix ave/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_ave_chunk.html#index-0">fix ave/chunk</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_ave_correlate.html#index-0">fix ave/correlate</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_ave_correlate_long.html#index-0">fix ave/correlate/long</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_ave_histo.html#index-0">fix ave/histo</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_ave_time.html#index-0">fix ave/time</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_aveforce.html#index-0">fix aveforce</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_balance.html#index-0">fix balance</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_bond_break.html#index-0">fix bond/break</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_bond_create.html#index-0">fix bond/create</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_bond_swap.html#index-0">fix bond/swap</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_box_relax.html#index-0">fix box/relax</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_colvars.html#index-0">fix colvars</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_controller.html#index-0">fix controller</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_deform.html#index-0">fix deform</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_deposit.html#index-0">fix deposit</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_drag.html#index-0">fix drag</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_drude.html#index-0">fix drude</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_drude_transform.html#index-0">fix drude/transform/direct</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_dt_reset.html#index-0">fix dt/reset</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_efield.html#index-0">fix efield</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_ehex.html#index-0">fix ehex</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_enforce2d.html#index-0">fix enforce2d</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_eos_cv.html#index-0">fix eos/cv</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_eos_table.html#index-0">fix eos/table</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_eos_table_rx.html#index-0">fix eos/table/rx</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_evaporate.html#index-0">fix evaporate</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_external.html#index-0">fix external</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_flow_gauss.html#index-0">fix flow/gauss</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_freeze.html#index-0">fix freeze</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_gcmc.html#index-0">fix gcmc</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_gld.html#index-0">fix gld</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_gle.html#index-0">fix gle</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_gravity.html#index-0">fix gravity</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_heat.html#index-0">fix heat</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_imd.html#index-0">fix imd</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_indent.html#index-0">fix indent</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_ipi.html#index-0">fix ipi</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_langevin.html#index-0">fix langevin</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_langevin_drude.html#index-0">fix langevin/drude</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_langevin_eff.html#index-0">fix langevin/eff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_lb_fluid.html#index-0">fix lb/fluid</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_lb_momentum.html#index-0">fix lb/momentum</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_lb_pc.html#index-0">fix lb/pc</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_lb_rigid_pc_sphere.html#index-0">fix lb/rigid/pc/sphere</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_lb_viscous.html#index-0">fix lb/viscous</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_lineforce.html#index-0">fix lineforce</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_manifoldforce.html#index-0">fix manifoldforce</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_meso.html#index-0">fix meso</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_meso_stationary.html#index-0">fix meso/stationary</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_momentum.html#index-0">fix momentum</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_move.html#index-0">fix move</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_msst.html#index-0">fix msst</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_neb.html#index-0">fix neb</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nph_asphere.html#index-0">fix nph/asphere</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nph_body.html#index-0">fix nph/body</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nph_sphere.html#index-0">fix nph/sphere</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nphug.html#index-0">fix nphug</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_npt_asphere.html#index-0">fix npt/asphere</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_npt_body.html#index-0">fix npt/body</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_npt_sphere.html#index-0">fix npt/sphere</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nve.html#index-0">fix nve</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nve_asphere.html#index-0">fix nve/asphere</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nve_asphere_noforce.html#index-0">fix nve/asphere/noforce</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nve_body.html#index-0">fix nve/body</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nve_eff.html#index-0">fix nve/eff</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="fix_nve_limit.html#index-0">fix nve/limit</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nve_line.html#index-0">fix nve/line</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nve_manifold_rattle.html#index-0">fix nve/manifold/rattle</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nve_noforce.html#index-0">fix nve/noforce</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nve_sphere.html#index-0">fix nve/sphere</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nve_tri.html#index-0">fix nve/tri</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nh.html#index-0">fix nvt</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nvt_asphere.html#index-0">fix nvt/asphere</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nvt_body.html#index-0">fix nvt/body</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nh_eff.html#index-0">fix nvt/eff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nvt_manifold_rattle.html#index-0">fix nvt/manifold/rattle</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nvt_sllod.html#index-0">fix nvt/sllod</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nvt_sllod_eff.html#index-0">fix nvt/sllod/eff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_nvt_sphere.html#index-0">fix nvt/sphere</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_oneway.html#index-0">fix oneway</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_orient.html#index-0">fix orient/fcc</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_phonon.html#index-0">fix phonon</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_pimd.html#index-0">fix pimd</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_planeforce.html#index-0">fix planeforce</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_pour.html#index-0">fix pour</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_press_berendsen.html#index-0">fix press/berendsen</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_print.html#index-0">fix print</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_property_atom.html#index-0">fix property/atom</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_qbmsst.html#index-0">fix qbmsst</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_qeq_comb.html#index-0">fix qeq/comb</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_qeq.html#index-0">fix qeq/point</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_qeq_reax.html#index-0">fix qeq/reax</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_qmmm.html#index-0">fix qmmm</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_qtb.html#index-0">fix qtb</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_reax_bonds.html#index-0">fix reax/bonds</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_reaxc_species.html#index-0">fix reax/c/species</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_recenter.html#index-0">fix recenter</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_restrain.html#index-0">fix restrain</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_rigid.html#index-0">fix rigid</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_rx.html#index-0">fix rx</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_saed_vtk.html#index-0">fix saed/vtk</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_setforce.html#index-0">fix setforce</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_shake.html#index-0">fix shake</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_shardlow.html#index-0">fix shardlow</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_smd.html#index-0">fix smd</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_smd_adjust_dt.html#index-0">fix smd/adjust\_dt</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_smd_integrate_tlsph.html#index-0">fix smd/integrate\_tlsph</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_smd_integrate_ulsph.html#index-0">fix smd/integrate\_ulsph</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_smd_move_triangulated_surface.html#index-0">fix smd/move\_tri\_surf</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_smd_setvel.html#index-0">fix smd/setvel</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_smd_wall_surface.html#index-0">fix smd/wall\_surface</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_spring.html#index-0">fix spring</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_spring_chunk.html#index-0">fix spring/chunk</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_spring_rg.html#index-0">fix spring/rg</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_spring_self.html#index-0">fix spring/self</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_srd.html#index-0">fix srd</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_store_force.html#index-0">fix store/force</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_store_state.html#index-0">fix store/state</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_temp_berendsen.html#index-0">fix temp/berendsen</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_temp_csvr.html#index-0">fix temp/csvr</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_temp_rescale.html#index-0">fix temp/rescale</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_temp_rescale_eff.html#index-0">fix temp/rescale/eff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_tfmc.html#index-0">fix tfmc</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_thermal_conductivity.html#index-0">fix thermal/conductivity</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_ti_rs.html#index-0">fix ti/rs</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_ti_spring.html#index-0">fix ti/spring</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_tmd.html#index-0">fix tmd</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_ttm.html#index-0">fix ttm</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_tune_kspace.html#index-0">fix tune/kspace</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_vector.html#index-0">fix vector</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_viscosity.html#index-0">fix viscosity</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_viscous.html#index-0">fix viscous</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_wall_gran.html#index-0">fix wall/gran</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_wall.html#index-0">fix wall/lj93</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_wall_piston.html#index-0">fix wall/piston</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_wall_reflect.html#index-0">fix wall/reflect</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_wall_region.html#index-0">fix wall/region</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_wall_srd.html#index-0">fix wall/srd</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="fix_modify.html#index-0">fix\_modify</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="G">G</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="group.html#index-0">group</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="group2ndx.html#index-0">group2ndx</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="I">I</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="if.html#index-0">if</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_coeff.html#index-0">improper\_coeff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_style.html#index-0">improper\_style</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_class2.html#index-0">improper\_style class2</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_cossq.html#index-0">improper\_style cossq</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_cvff.html#index-0">improper\_style cvff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_distance.html#index-0">improper\_style distance</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_fourier.html#index-0">improper\_style fourier</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="improper_harmonic.html#index-0">improper\_style harmonic</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_hybrid.html#index-0">improper\_style hybrid</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_none.html#index-0">improper\_style none</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_ring.html#index-0">improper\_style ring</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_umbrella.html#index-0">improper\_style umbrella</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="improper_zero.html#index-0">improper\_style zero</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="include.html#index-0">include</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="info.html#index-0">info</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="J">J</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="jump.html#index-0">jump</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="K">K</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="kspace_modify.html#index-0">kspace\_modify</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="kspace_style.html#index-0">kspace\_style</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="L">L</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="label.html#index-0">label</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="lattice.html#index-0">lattice</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="log.html#index-0">log</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="M">M</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="mass.html#index-0">mass</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="min_modify.html#index-0">min\_modify</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="min_style.html#index-0">min\_style</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="minimize.html#index-0">minimize</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="molecule.html#index-0">molecule</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="N">N</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="neb.html#index-0">neb</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="neigh_modify.html#index-0">neigh\_modify</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="neighbor.html#index-0">neighbor</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="newton.html#index-0">newton</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="next.html#index-0">next</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="P">P</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="package.html#index-0">package</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_coeff.html#index-0">pair\_coeff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_modify.html#index-0">pair\_modify</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_style.html#index-0">pair\_style</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_adp.html#index-0">pair\_style adp</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_airebo.html#index-0">pair\_style airebo</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_awpmd.html#index-0">pair\_style awpmd/cut</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_beck.html#index-0">pair\_style beck</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_body.html#index-0">pair\_style body</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_bop.html#index-0">pair\_style bop</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_born.html#index-0">pair\_style born</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_cs.html#index-0">pair\_style born/coul/long/cs</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_brownian.html#index-0">pair\_style brownian</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_buck.html#index-0">pair\_style buck</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_buck_long.html#index-0">pair\_style buck/long/coul/long</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_colloid.html#index-0">pair\_style colloid</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_comb.html#index-0">pair\_style comb</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_coul.html#index-0">pair\_style coul/cut</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_coul_diel.html#index-0">pair\_style coul/diel</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_dpd.html#index-0">pair\_style dpd</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_dpd_fdt.html#index-0">pair\_style dpd/fdt</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_dsmc.html#index-0">pair\_style dsmc</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_eam.html#index-0">pair\_style eam</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_edip.html#index-0">pair\_style edip</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_eff.html#index-0">pair\_style eff/cut</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_eim.html#index-0">pair\_style eim</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_exp6_rx.html#index-0">pair\_style exp6/rx</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_gauss.html#index-0">pair\_style gauss</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_gayberne.html#index-0">pair\_style gayberne</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_gran.html#index-0">pair\_style gran/hooke</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_hbond_dreiding.html#index-0">pair\_style hbond/dreiding/lj</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_hybrid.html#index-0">pair\_style hybrid</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_kim.html#index-0">pair\_style kim</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_lcbop.html#index-0">pair\_style lcbop</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_line_lj.html#index-0">pair\_style line/lj</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_list.html#index-0">pair\_style list</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_charmm.html#index-0">pair\_style lj/charmm/coul/charmm</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_class2.html#index-0">pair\_style lj/class2</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_lj_cubic.html#index-0">pair\_style lj/cubic</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_lj.html#index-0">pair\_style lj/cut</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_dipole.html#index-0">pair\_style lj/cut/dipole/cut</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_lj_soft.html#index-0">pair\_style lj/cut/soft</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_lj_expand.html#index-0">pair\_style lj/expand</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_gromacs.html#index-0">pair\_style lj/gromacs</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_lj_long.html#index-0">pair\_style lj/long/coul/long</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_mdf.html#index-0">pair\_style lj/mdf</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_sdk.html#index-0">pair\_style lj/sdk</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_lj_sf.html#index-0">pair\_style lj/sf</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_lj_smooth.html#index-0">pair\_style lj/smooth</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_lj_smooth_linear.html#index-0">pair\_style lj/smooth/linear</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_lj96.html#index-0">pair\_style lj96/cut</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="pair_lubricate.html#index-0">pair\_style lubricate</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_lubricateU.html#index-0">pair\_style lubricateU</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_meam.html#index-0">pair\_style meam</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_mgpt.html#index-0">pair\_style mgpt</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_mie.html#index-0">pair\_style mie/cut</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_morse.html#index-0">pair\_style morse</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_multi_lucy.html#index-0">pair\_style multi/lucy</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_multi_lucy_rx.html#index-0">pair\_style multi/lucy/rx</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_nb3b_harmonic.html#index-0">pair\_style nb3b/harmonic</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_nm.html#index-0">pair\_style nm/cut</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_none.html#index-0">pair\_style none</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_peri.html#index-0">pair\_style peri/pmb</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_polymorphic.html#index-0">pair\_style polymorphic</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_quip.html#index-0">pair\_style quip</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_reax.html#index-0">pair\_style reax</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_reax_c.html#index-0">pair\_style reax/c</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_resquared.html#index-0">pair\_style resquared</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_smd_hertz.html#index-0">pair\_style smd/hertz</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_smd_tlsph.html#index-0">pair\_style smd/tlsph</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_smd_triangulated_surface.html#index-0">pair\_style smd/tri\_surface</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_smd_ulsph.html#index-0">pair\_style smd/ulsph</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_smtbq.html#index-0">pair\_style smtbq</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_snap.html#index-0">pair\_style snap</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_soft.html#index-0">pair\_style soft</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_sph_heatconduction.html#index-0">pair\_style sph/heatconduction</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_sph_idealgas.html#index-0">pair\_style sph/idealgas</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_sph_lj.html#index-0">pair\_style sph/lj</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_sph_rhosum.html#index-0">pair\_style sph/rhosum</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_sph_taitwater.html#index-0">pair\_style sph/taitwater</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_sph_taitwater_morris.html#index-0">pair\_style sph/taitwater/morris</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_srp.html#index-0">pair\_style srp</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_sw.html#index-0">pair\_style sw</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_table.html#index-0">pair\_style table</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_table_rx.html#index-0">pair\_style table/rx</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_tersoff.html#index-0">pair\_style tersoff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_tersoff_mod.html#index-0">pair\_style tersoff/mod</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_tersoff_zbl.html#index-0">pair\_style tersoff/zbl</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_thole.html#index-0">pair\_style thole</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_tri_lj.html#index-0">pair\_style tri/lj</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_vashishta.html#index-0">pair\_style vashishta</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_yukawa.html#index-0">pair\_style yukawa</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_yukawa_colloid.html#index-0">pair\_style yukawa/colloid</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_zbl.html#index-0">pair\_style zbl</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_zero.html#index-0">pair\_style zero</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="pair_write.html#index-0">pair\_write</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="partition.html#index-0">partition</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="prd.html#index-0">prd</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="print.html#index-0">print</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="processors.html#index-0">processors</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="python.html#index-0">python</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="Q">Q</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="quit.html#index-0">quit</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="R">R</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="read_data.html#index-0">read\_data</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="read_dump.html#index-0">read\_dump</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="read_restart.html#index-0">read\_restart</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="region.html#index-0">region</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="replicate.html#index-0">replicate</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="rerun.html#index-0">rerun</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="reset_timestep.html#index-0">reset\_timestep</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="restart.html#index-0">restart</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="run.html#index-0">run</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="run_style.html#index-0">run\_style</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="S">S</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="set.html#index-0">set</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="shell.html#index-0">shell</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="special_bonds.html#index-0">special\_bonds</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="suffix.html#index-0">suffix</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="T">T</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
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|
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|
<dt><a href="tad.html#index-0">tad</a>
|
|
</dt>
|
|
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|
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|
<dt><a href="temper.html#index-0">temper</a>
|
|
</dt>
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|
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|
|
|
<dt><a href="thermo.html#index-0">thermo</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="thermo_modify.html#index-0">thermo\_modify</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="thermo_style.html#index-0">thermo\_style</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="timer.html#index-0">timer</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="timestep.html#index-0">timestep</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="U">U</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="uncompute.html#index-0">uncompute</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="undump.html#index-0">undump</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="unfix.html#index-0">unfix</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="units.html#index-0">units</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="V">V</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="variable.html#index-0">variable</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="velocity.html#index-0">velocity</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
<h2 id="W">W</h2>
|
|
<table style="width: 100%" class="indextable genindextable"><tr>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="write_coeff.html#index-0">write\_coeff</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="write_data.html#index-0">write\_data</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
<td style="width: 33%" valign="top"><dl>
|
|
|
|
<dt><a href="write_dump.html#index-0">write\_dump</a>
|
|
</dt>
|
|
|
|
|
|
<dt><a href="write_restart.html#index-0">write\_restart</a>
|
|
</dt>
|
|
|
|
</dl></td>
|
|
</tr></table>
|
|
|
|
|
|
|
|
</div>
|
|
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|
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