forked from lijiext/lammps
507 lines
37 KiB
HTML
507 lines
37 KiB
HTML
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<title>compute property/local command — LAMMPS documentation</title>
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<link rel="next" title="compute rdf command" href="compute_rdf.html"/>
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<a href="Manual.html" class="icon icon-home"> LAMMPS
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<p class="caption"><span class="caption-text">User Documentation</span></p>
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<ul>
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<li class="toctree-l1"><a class="reference internal" href="Section_intro.html">1. Introduction</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_start.html">2. Getting Started</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_commands.html">3. Commands</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_packages.html">4. Packages</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_accelerate.html">5. Accelerating LAMMPS performance</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_howto.html">6. How-to discussions</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_example.html">7. Example problems</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_perf.html">8. Performance & scalability</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_tools.html">9. Additional tools</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_modify.html">10. Modifying & extending LAMMPS</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_python.html">11. Python interface to LAMMPS</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_errors.html">12. Errors</a></li>
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<li class="toctree-l1"><a class="reference internal" href="Section_history.html">13. Future and history</a></li>
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</ul>
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<p class="caption"><span class="caption-text">Index</span></p>
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<ul class="current">
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<li class="toctree-l1"><a class="reference internal" href="tutorials.html">Tutorials</a></li>
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<li class="toctree-l1"><a class="reference internal" href="commands.html">Commands</a></li>
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<li class="toctree-l1"><a class="reference internal" href="fixes.html">Fixes</a></li>
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<li class="toctree-l1 current"><a class="reference internal" href="computes.html">Computes</a><ul class="current">
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<li class="toctree-l2"><a class="reference internal" href="compute_ackland_atom.html">compute ackland/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_angle.html">compute angle command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_angle_local.html">compute angle/local command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_angmom_chunk.html">compute angmom/chunk command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_basal_atom.html">compute basal/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_body_local.html">compute body/local command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_bond.html">compute bond command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_bond_local.html">compute bond/local command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_centro_atom.html">compute centro/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_chunk_atom.html">compute chunk/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_cluster_atom.html">compute cluster/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_cna_atom.html">compute cna/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_com.html">compute com command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_com_chunk.html">compute com/chunk command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_contact_atom.html">compute contact/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_coord_atom.html">compute coord/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_damage_atom.html">compute damage/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_dihedral.html">compute dihedral command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_dihedral_local.html">compute dihedral/local command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_dilatation_atom.html">compute dilatation/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_dipole_chunk.html">compute dipole/chunk command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_displace_atom.html">compute displace/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_dpd.html">compute dpd command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_dpd_atom.html">compute dpd/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_erotate_asphere.html">compute erotate/asphere command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_erotate_rigid.html">compute erotate/rigid command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_erotate_sphere.html">compute erotate/sphere command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_erotate_sphere_atom.html">compute erotate/sphere/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_event_displace.html">compute event/displace command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_fep.html">compute fep command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_group_group.html">compute group/group command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_gyration.html">compute gyration command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_gyration_chunk.html">compute gyration/chunk command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_heat_flux.html">compute heat/flux command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_hexorder_atom.html">compute hexorder/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_improper.html">compute improper command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_improper_local.html">compute improper/local command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_inertia_chunk.html">compute inertia/chunk command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_ke.html">compute ke command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_ke_atom.html">compute ke/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_ke_atom_eff.html">compute ke/atom/eff command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_ke_eff.html">compute ke/eff command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_ke_rigid.html">compute ke/rigid command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_meso_e_atom.html">compute meso/e/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_meso_rho_atom.html">compute meso/rho/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_meso_t_atom.html">compute meso/t/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_msd.html">compute msd command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_msd_chunk.html">compute msd/chunk command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_msd_nongauss.html">compute msd/nongauss command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_omega_chunk.html">compute omega/chunk command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_orientorder_atom.html">compute orientorder/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_pair.html">compute pair command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_pair_local.html">compute pair/local command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_pe.html">compute pe command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_pe_atom.html">compute pe/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_plasticity_atom.html">compute plasticity/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_pressure.html">compute pressure command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_property_atom.html">compute property/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_property_chunk.html">compute property/chunk command</a></li>
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<li class="toctree-l2 current"><a class="current reference internal" href="#">compute property/local command</a><ul>
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<li class="toctree-l3"><a class="reference internal" href="#syntax">Syntax</a></li>
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<li class="toctree-l3"><a class="reference internal" href="#examples">Examples</a></li>
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<li class="toctree-l3"><a class="reference internal" href="#description">Description</a></li>
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<li class="toctree-l3"><a class="reference internal" href="#restrictions">Restrictions</a></li>
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<li class="toctree-l3"><a class="reference internal" href="#related-commands">Related commands</a></li>
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<li class="toctree-l3"><a class="reference internal" href="#default">Default</a></li>
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</ul>
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</li>
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<li class="toctree-l2"><a class="reference internal" href="compute_rdf.html">compute rdf command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_reduce.html">compute reduce command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_reduce.html#compute-reduce-region-command">compute reduce/region command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_rigid_local.html">compute rigid/local command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_saed.html">compute saed command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_slice.html">compute slice command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_contact_radius.html">compute smd/contact/radius command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_damage.html">compute smd/damage command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_hourglass_error.html">compute smd/hourglass/error command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_internal_energy.html">compute smd/internal/energy command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_plastic_strain.html">compute smd/plastic/strain command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_plastic_strain_rate.html">compute smd/plastic/strain/rate command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_rho.html">compute smd/rho command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_tlsph_defgrad.html">compute smd/tlsph/defgrad command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_tlsph_dt.html">compute smd/tlsph/dt command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_tlsph_num_neighs.html">compute smd/tlsph/num/neighs command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_tlsph_shape.html">compute smd/tlsph/shape command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_tlsph_strain.html">compute smd/tlsph/strain command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_tlsph_strain_rate.html">compute smd/tlsph/strain/rate command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_tlsph_stress.html">compute smd/tlsph/stress command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_triangle_mesh_vertices.html">compute smd/triangle/mesh/vertices</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_ulsph_num_neighs.html">compute smd/ulsph/num/neighs command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_ulsph_strain.html">compute smd/ulsph/strain command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_ulsph_strain_rate.html">compute smd/ulsph/strain/rate command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_ulsph_stress.html">compute smd/ulsph/stress command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_smd_vol.html">compute smd/vol command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_sna_atom.html">compute sna/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_sna_atom.html#compute-snad-atom-command">compute snad/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_sna_atom.html#compute-snav-atom-command">compute snav/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_stress_atom.html">compute stress/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_tally.html">compute force/tally command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_tally.html#compute-heat-flux-tally-command">compute heat/flux/tally command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_tally.html#compute-pe-tally-command">compute pe/tally command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_tally.html#compute-pe-mol-tally-command">compute pe/mol/tally command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_tally.html#compute-stress-tally-command">compute stress/tally command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp.html">compute temp command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp.html#compute-temp-kk-command">compute temp/kk command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_asphere.html">compute temp/asphere command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_body.html">compute temp/body command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_chunk.html">compute temp/chunk command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_com.html">compute temp/com command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_cs.html">compute temp/cs command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_deform.html">compute temp/deform command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_deform_eff.html">compute temp/deform/eff command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_drude.html">compute temp/drude command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_eff.html">compute temp/eff command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_partial.html">compute temp/partial command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_profile.html">compute temp/profile command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_ramp.html">compute temp/ramp command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_region.html">compute temp/region command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_region_eff.html">compute temp/region/eff command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_rotate.html">compute temp/rotate command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_temp_sphere.html">compute temp/sphere command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_ti.html">compute ti command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_torque_chunk.html">compute torque/chunk command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_vacf.html">compute vacf command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_vcm_chunk.html">compute vcm/chunk command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_voronoi_atom.html">compute voronoi/atom command</a></li>
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<li class="toctree-l2"><a class="reference internal" href="compute_xrd.html">compute xrd command</a></li>
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</ul>
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</li>
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<li class="toctree-l1"><a class="reference internal" href="pairs.html">Pair Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="bonds.html">Bonds</a></li>
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<li class="toctree-l1"><a class="reference internal" href="angles.html">Angle Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="dihedrals.html">Dihedral Styles</a></li>
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<li class="toctree-l1"><a class="reference internal" href="impropers.html">Improper Styles</a></li>
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</ul>
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<div class="section" id="compute-property-local-command">
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<span id="index-0"></span><h1>compute property/local command</h1>
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<div class="section" id="syntax">
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<h2>Syntax</h2>
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<div class="highlight-default"><div class="highlight"><pre><span></span><span class="n">compute</span> <span class="n">ID</span> <span class="n">group</span><span class="o">-</span><span class="n">ID</span> <span class="nb">property</span><span class="o">/</span><span class="n">local</span> <span class="n">attribute1</span> <span class="n">attribute2</span> <span class="o">...</span> <span class="n">keyword</span> <span class="n">args</span> <span class="o">...</span>
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</pre></div>
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</div>
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<ul>
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<li><p class="first">ID, group-ID are documented in <a class="reference internal" href="compute.html"><span class="doc">compute</span></a> command</p>
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</li>
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<li><p class="first">property/local = style name of this compute command</p>
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</li>
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<li><p class="first">one or more attributes may be appended</p>
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<div class="highlight-default"><div class="highlight"><pre><span></span><span class="n">possible</span> <span class="n">attributes</span> <span class="o">=</span> <span class="n">natom1</span> <span class="n">natom2</span> <span class="n">ntype1</span> <span class="n">ntype2</span>
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<span class="n">patom1</span> <span class="n">patom2</span> <span class="n">ptype1</span> <span class="n">ptype2</span>
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<span class="n">batom1</span> <span class="n">batom2</span> <span class="n">btype</span>
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<span class="n">aatom1</span> <span class="n">aatom2</span> <span class="n">aatom3</span> <span class="n">atype</span>
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<span class="n">datom1</span> <span class="n">datom2</span> <span class="n">datom3</span> <span class="n">dtype</span>
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<span class="n">iatom1</span> <span class="n">iatom2</span> <span class="n">iatom3</span> <span class="n">itype</span>
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</pre></div>
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</div>
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<div class="highlight-default"><div class="highlight"><pre><span></span><span class="n">natom1</span><span class="p">,</span> <span class="n">natom2</span> <span class="o">=</span> <span class="n">IDs</span> <span class="n">of</span> <span class="mi">2</span> <span class="n">atoms</span> <span class="ow">in</span> <span class="n">each</span> <span class="n">pair</span> <span class="p">(</span><span class="n">within</span> <span class="n">neighbor</span> <span class="n">cutoff</span><span class="p">)</span>
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<span class="n">ntype1</span><span class="p">,</span> <span class="n">ntype2</span> <span class="o">=</span> <span class="nb">type</span> <span class="n">of</span> <span class="mi">2</span> <span class="n">atoms</span> <span class="ow">in</span> <span class="n">each</span> <span class="n">pair</span> <span class="p">(</span><span class="n">within</span> <span class="n">neighbor</span> <span class="n">cutoff</span><span class="p">)</span>
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<span class="n">patom1</span><span class="p">,</span> <span class="n">patom2</span> <span class="o">=</span> <span class="n">IDs</span> <span class="n">of</span> <span class="mi">2</span> <span class="n">atoms</span> <span class="ow">in</span> <span class="n">each</span> <span class="n">pair</span> <span class="p">(</span><span class="n">within</span> <span class="n">force</span> <span class="n">cutoff</span><span class="p">)</span>
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<span class="n">ptype1</span><span class="p">,</span> <span class="n">ptype2</span> <span class="o">=</span> <span class="nb">type</span> <span class="n">of</span> <span class="mi">2</span> <span class="n">atoms</span> <span class="ow">in</span> <span class="n">each</span> <span class="n">pair</span> <span class="p">(</span><span class="n">within</span> <span class="n">force</span> <span class="n">cutoff</span><span class="p">)</span>
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<span class="n">batom1</span><span class="p">,</span> <span class="n">batom2</span> <span class="o">=</span> <span class="n">IDs</span> <span class="n">of</span> <span class="mi">2</span> <span class="n">atoms</span> <span class="ow">in</span> <span class="n">each</span> <span class="n">bond</span>
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<span class="n">btype</span> <span class="o">=</span> <span class="n">bond</span> <span class="nb">type</span> <span class="n">of</span> <span class="n">each</span> <span class="n">bond</span>
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<span class="n">aatom1</span><span class="p">,</span> <span class="n">aatom2</span><span class="p">,</span> <span class="n">aatom3</span> <span class="o">=</span> <span class="n">IDs</span> <span class="n">of</span> <span class="mi">3</span> <span class="n">atoms</span> <span class="ow">in</span> <span class="n">each</span> <span class="n">angle</span>
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<span class="n">atype</span> <span class="o">=</span> <span class="n">angle</span> <span class="nb">type</span> <span class="n">of</span> <span class="n">each</span> <span class="n">angle</span>
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<span class="n">datom1</span><span class="p">,</span> <span class="n">datom2</span><span class="p">,</span> <span class="n">datom3</span><span class="p">,</span> <span class="n">datom4</span> <span class="o">=</span> <span class="n">IDs</span> <span class="n">of</span> <span class="mi">4</span> <span class="n">atoms</span> <span class="ow">in</span> <span class="n">each</span> <span class="n">dihedral</span>
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<span class="n">dtype</span> <span class="o">=</span> <span class="n">dihedral</span> <span class="nb">type</span> <span class="n">of</span> <span class="n">each</span> <span class="n">dihedral</span>
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<span class="n">iatom1</span><span class="p">,</span> <span class="n">iatom2</span><span class="p">,</span> <span class="n">iatom3</span><span class="p">,</span> <span class="n">iatom4</span> <span class="o">=</span> <span class="n">IDs</span> <span class="n">of</span> <span class="mi">4</span> <span class="n">atoms</span> <span class="ow">in</span> <span class="n">each</span> <span class="n">improper</span>
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<span class="n">itype</span> <span class="o">=</span> <span class="n">improper</span> <span class="nb">type</span> <span class="n">of</span> <span class="n">each</span> <span class="n">improper</span>
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</pre></div>
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</div>
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</li>
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<li><p class="first">zero or more keyword/arg pairs may be appended</p>
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</li>
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<li><p class="first">keyword = <em>cutoff</em></p>
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<pre class="literal-block">
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<em>cutoff</em> arg = <em>type</em> or <em>radius</em>
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</pre>
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</li>
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</ul>
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</div>
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<div class="section" id="examples">
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<h2>Examples</h2>
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<div class="highlight-default"><div class="highlight"><pre><span></span><span class="n">compute</span> <span class="mi">1</span> <span class="nb">all</span> <span class="nb">property</span><span class="o">/</span><span class="n">local</span> <span class="n">btype</span> <span class="n">batom1</span> <span class="n">batom2</span>
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<span class="n">compute</span> <span class="mi">1</span> <span class="nb">all</span> <span class="nb">property</span><span class="o">/</span><span class="n">local</span> <span class="n">atype</span> <span class="n">aatom2</span>
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</pre></div>
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</div>
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</div>
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<div class="section" id="description">
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<h2>Description</h2>
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<p>Define a computation that stores the specified attributes as local
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data so it can be accessed by other <a class="reference internal" href="Section_howto.html#howto-15"><span class="std std-ref">output commands</span></a>. If the input attributes refer
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to bond information, then the number of datums generated, aggregated
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across all processors, equals the number of bonds in the system.
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Ditto for pairs, angles, etc.</p>
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<p>If multiple attributes are specified then they must all generate the
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same amount of information, so that the resulting local array has the
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same number of rows for each column. This means that only bond
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attributes can be specified together, or angle attributes, etc. Bond
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and angle attributes can not be mixed in the same compute
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property/local command.</p>
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<p>If the inputs are pair attributes, the local data is generated by
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looping over the pairwise neighbor list. Info about an individual
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pairwise interaction will only be included if both atoms in the pair
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are in the specified compute group. For <em>natom1</em> and <em>natom2</em>, all
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atom pairs in the neighbor list are considered (out to the neighbor
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cutoff = force cutoff + <a class="reference internal" href="neighbor.html"><span class="doc">neighbor skin</span></a>). For <em>patom1</em>
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and <em>patom2</em>, the distance between the atoms must be less than the
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force cutoff distance for that pair to be included, as defined by the
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<a class="reference internal" href="pair_style.html"><span class="doc">pair_style</span></a> and <a class="reference internal" href="pair_coeff.html"><span class="doc">pair_coeff</span></a>
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commands.</p>
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<p>The optional <em>cutoff</em> keyword determines how the force cutoff distance
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for an interaction is determined for the <em>patom1</em> and <em>patom2</em>
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attributes. For the default setting of <em>type</em>, the pairwise cutoff
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defined by the <a class="reference internal" href="pair_style.html"><span class="doc">pair_style</span></a> command for the types of
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the two atoms is used. For the <em>radius</em> setting, the sum of the radii
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of the two particles is used as a cutoff. For example, this is
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appropriate for granular particles which only interact when they are
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overlapping, as computed by <a class="reference external" href="pair_gran.txt">granular pair styles</a>.</p>
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<p>If the inputs are bond, angle, etc attributes, the local data is
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generated by looping over all the atoms owned on a processor and
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extracting bond, angle, etc info. For bonds, info about an individual
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bond will only be included if both atoms in the bond are in the
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specified compute group. Likewise for angles, dihedrals, etc.</p>
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<p>For bonds and angles, a bonds/angles that have been broken by setting
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their bond/angle type to 0 will not be included. Bonds/angles that
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have been turned off (see the <a class="reference internal" href="fix_shake.html"><span class="doc">fix shake</span></a> or
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<a class="reference internal" href="delete_bonds.html"><span class="doc">delete_bonds</span></a> commands) by setting their bond/angle
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type negative are written into the file. This is consistent with the
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<a class="reference internal" href="compute_bond_local.html"><span class="doc">compute bond/local</span></a> and <a class="reference internal" href="compute_angle_local.html"><span class="doc">compute angle/local</span></a> commands</p>
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<p>Note that as atoms migrate from processor to processor, there will be
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no consistent ordering of the entries within the local vector or array
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from one timestep to the next. The only consistency that is
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guaranteed is that the ordering on a particular timestep will be the
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same for local vectors or arrays generated by other compute commands.
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For example, output from the <a class="reference internal" href="compute_bond_local.html"><span class="doc">compute bond/local</span></a> command can be combined with bond
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atom indices from this command and output by the <a class="reference internal" href="dump.html"><span class="doc">dump local</span></a> command in a consistent way.</p>
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<p>The <em>natom1</em> and <em>natom2</em>, or <em>patom1</em> and <em>patom2</em> attributes refer
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to the atom IDs of the 2 atoms in each pairwise interaction computed
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by the <a class="reference internal" href="pair_style.html"><span class="doc">pair_style</span></a> command. The <em>ntype1</em> and
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<em>ntype2</em>, or <em>ptype1</em> and <em>ptype2</em> attributes refer to the atom types
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of the 2 atoms in each pairwise interaction.</p>
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<div class="admonition note">
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<p class="first admonition-title">Note</p>
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<p class="last">For pairs, if two atoms I,J are involved in 1-2, 1-3, 1-4
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interactions within the molecular topology, their pairwise interaction
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may be turned off, and thus they may not appear in the neighbor list,
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and will not be part of the local data created by this command. More
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specifically, this may be true of I,J pairs with a weighting factor of
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0.0; pairs with a non-zero weighting factor are included. The
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weighting factors for 1-2, 1-3, and 1-4 pairwise interactions are set
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by the <a class="reference internal" href="special_bonds.html"><span class="doc">special_bonds</span></a> command.</p>
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</div>
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<p>The <em>batom1</em> and <em>batom2</em> attributes refer to the atom IDs of the 2
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atoms in each <a class="reference internal" href="bond_style.html"><span class="doc">bond</span></a>. The <em>btype</em> attribute refers to
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the type of the bond, from 1 to Nbtypes = # of bond types. The number
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of bond types is defined in the data file read by the
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<a class="reference internal" href="read_data.html"><span class="doc">read_data</span></a> command.</p>
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<p>The attributes that start with “a”, “d”, “i”, refer to similar values
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for <a class="reference internal" href="angle_style.html"><span class="doc">angles</span></a>, <a class="reference internal" href="dihedral_style.html"><span class="doc">dihedrals</span></a>, and
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<a class="reference internal" href="improper_style.html"><span class="doc">impropers</span></a>.</p>
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<p>The optional <em>cutoff</em> keyword</p>
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<p><strong>Output info:</strong></p>
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<p>This compute calculates a local vector or local array depending on the
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number of input values. The length of the vector or number of rows in
|
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the array is the number of bonds, angles, etc. If a single input is
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specified, a local vector is produced. If two or more inputs are
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specified, a local array is produced where the number of columns = the
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number of inputs. The vector or array can be accessed by any command
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that uses local values from a compute as input. See <a class="reference internal" href="Section_howto.html#howto-15"><span class="std std-ref">this section</span></a> for an overview of LAMMPS output
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options.</p>
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<p>The vector or array values will be integers that correspond to the
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specified attribute.</p>
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</div>
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<div class="section" id="restrictions">
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<h2>Restrictions</h2>
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<blockquote>
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<div>none</div></blockquote>
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</div>
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<div class="section" id="related-commands">
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<h2>Related commands</h2>
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<p><a class="reference internal" href="dump.html"><span class="doc">dump local</span></a>, <a class="reference internal" href="compute_reduce.html"><span class="doc">compute reduce</span></a></p>
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</div>
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<div class="section" id="default">
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<h2>Default</h2>
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<p>The keyword default is cutoff = type.</p>
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