forked from lijiext/lammps
9772 lines
259 KiB
Plaintext
9772 lines
259 KiB
Plaintext
"Previous Section"_Section_python.html - "LAMMPS WWW Site"_lws -
|
|
"LAMMPS Documentation"_ld - "LAMMPS Commands"_lc - "Next
|
|
Section"_Section_history.html :c
|
|
|
|
:link(lws,http://lammps.sandia.gov)
|
|
:link(ld,Manual.html)
|
|
:link(lc,Section_commands.html#comm)
|
|
|
|
:line
|
|
|
|
12. Errors :h3
|
|
|
|
This section describes the errors you can encounter when using LAMMPS,
|
|
either conceptually, or as printed out by the program.
|
|
|
|
12.1 "Common problems"_#err_1
|
|
12.2 "Reporting bugs"_#err_2
|
|
12.3 "Error & warning messages"_#err_3 :all(b)
|
|
|
|
:line
|
|
:line
|
|
|
|
12.1 Common problems :link(err_1),h4
|
|
|
|
If two LAMMPS runs do not produce the same answer on different
|
|
machines or different numbers of processors, this is typically not a
|
|
bug. In theory you should get identical answers on any number of
|
|
processors and on any machine. In practice, numerical round-off can
|
|
cause slight differences and eventual divergence of molecular dynamics
|
|
phase space trajectories within a few 100s or few 1000s of timesteps.
|
|
However, the statistical properties of the two runs (e.g. average
|
|
energy or temperature) should still be the same.
|
|
|
|
If the "velocity"_velocity.html command is used to set initial atom
|
|
velocities, a particular atom can be assigned a different velocity
|
|
when the problem is run on a different number of processors or on
|
|
different machines. If this happens, the phase space trajectories of
|
|
the two simulations will rapidly diverge. See the discussion of the
|
|
{loop} option in the "velocity"_velocity.html command for details and
|
|
options that avoid this issue.
|
|
|
|
Similarly, the "create_atoms"_create_atoms.html command generates a
|
|
lattice of atoms. For the same physical system, the ordering and
|
|
numbering of atoms by atom ID may be different depending on the number
|
|
of processors.
|
|
|
|
Some commands use random number generators which may be setup to
|
|
produce different random number streams on each processor and hence
|
|
will produce different effects when run on different numbers of
|
|
processors. A commonly-used example is the "fix
|
|
langevin"_fix_langevin.html command for thermostatting.
|
|
|
|
A LAMMPS simulation typically has two stages, setup and run. Most
|
|
LAMMPS errors are detected at setup time; others like a bond
|
|
stretching too far may not occur until the middle of a run.
|
|
|
|
LAMMPS tries to flag errors and print informative error messages so
|
|
you can fix the problem. Of course, LAMMPS cannot figure out your
|
|
physics or numerical mistakes, like choosing too big a timestep,
|
|
specifying erroneous force field coefficients, or putting 2 atoms on
|
|
top of each other! If you run into errors that LAMMPS doesn't catch
|
|
that you think it should flag, please send an email to the
|
|
"developers"_http://lammps.sandia.gov/authors.html.
|
|
|
|
If you get an error message about an invalid command in your input
|
|
script, you can determine what command is causing the problem by
|
|
looking in the log.lammps file or using the "echo command"_echo.html
|
|
to see it on the screen. If you get an error like "Invalid ...
|
|
style", with ... being fix, compute, pair, etc, it means that you
|
|
mistyped the style name or that the command is part of an optional
|
|
package which was not compiled into your executable. The list of
|
|
available styles in your executable can be listed by using "the -h
|
|
command-line argument"_Section_start.html#start_7. The installation
|
|
and compilation of optional packages is explained in the "installation
|
|
instructions"_Section_start.html#start_3.
|
|
|
|
For a given command, LAMMPS expects certain arguments in a specified
|
|
order. If you mess this up, LAMMPS will often flag the error, but it
|
|
may also simply read a bogus argument and assign a value that is
|
|
valid, but not what you wanted. E.g. trying to read the string "abc"
|
|
as an integer value of 0. Careful reading of the associated doc page
|
|
for the command should allow you to fix these problems. Note that
|
|
some commands allow for variables to be specified in place of numeric
|
|
constants so that the value can be evaluated and change over the
|
|
course of a run. This is typically done with the syntax {v_name} for
|
|
a parameter, where name is the name of the variable. This is only
|
|
allowed if the command documentation says it is.
|
|
|
|
Generally, LAMMPS will print a message to the screen and logfile and
|
|
exit gracefully when it encounters a fatal error. Sometimes it will
|
|
print a WARNING to the screen and logfile and continue on; you can
|
|
decide if the WARNING is important or not. A WARNING message that is
|
|
generated in the middle of a run is only printed to the screen, not to
|
|
the logfile, to avoid cluttering up thermodynamic output. If LAMMPS
|
|
crashes or hangs without spitting out an error message first then it
|
|
could be a bug (see "this section"_#err_2) or one of the following
|
|
cases:
|
|
|
|
LAMMPS runs in the available memory a processor allows to be
|
|
allocated. Most reasonable MD runs are compute limited, not memory
|
|
limited, so this shouldn't be a bottleneck on most platforms. Almost
|
|
all large memory allocations in the code are done via C-style malloc's
|
|
which will generate an error message if you run out of memory.
|
|
Smaller chunks of memory are allocated via C++ "new" statements. If
|
|
you are unlucky you could run out of memory just when one of these
|
|
small requests is made, in which case the code will crash or hang (in
|
|
parallel), since LAMMPS doesn't trap on those errors.
|
|
|
|
Illegal arithmetic can cause LAMMPS to run slow or crash. This is
|
|
typically due to invalid physics and numerics that your simulation is
|
|
computing. If you see wild thermodynamic values or NaN values in your
|
|
LAMMPS output, something is wrong with your simulation. If you
|
|
suspect this is happening, it is a good idea to print out
|
|
thermodynamic info frequently (e.g. every timestep) via the
|
|
"thermo"_thermo.html so you can monitor what is happening.
|
|
Visualizing the atom movement is also a good idea to insure your model
|
|
is behaving as you expect.
|
|
|
|
In parallel, one way LAMMPS can hang is due to how different MPI
|
|
implementations handle buffering of messages. If the code hangs
|
|
without an error message, it may be that you need to specify an MPI
|
|
setting or two (usually via an environment variable) to enable
|
|
buffering or boost the sizes of messages that can be buffered.
|
|
|
|
:line
|
|
|
|
12.2 Reporting bugs :link(err_2),h4
|
|
|
|
If you are confident that you have found a bug in LAMMPS, follow these
|
|
steps.
|
|
|
|
Check the "New features and bug
|
|
fixes"_http://lammps.sandia.gov/bug.html section of the "LAMMPS WWW
|
|
site"_lws to see if the bug has already been reported or fixed or the
|
|
"Unfixed bug"_http://lammps.sandia.gov/unbug.html to see if a fix is
|
|
pending.
|
|
|
|
Check the "mailing list"_http://lammps.sandia.gov/mail.html
|
|
to see if it has been discussed before.
|
|
|
|
If not, send an email to the mailing list describing the problem with
|
|
any ideas you have as to what is causing it or where in the code the
|
|
problem might be. The developers will ask for more info if needed,
|
|
such as an input script or data files.
|
|
|
|
The most useful thing you can do to help us fix the bug is to isolate
|
|
the problem. Run it on the smallest number of atoms and fewest number
|
|
of processors and with the simplest input script that reproduces the
|
|
bug and try to identify what command or combination of commands is
|
|
causing the problem.
|
|
|
|
As a last resort, you can send an email directly to the
|
|
"developers"_http://lammps.sandia.gov/authors.html.
|
|
|
|
:line
|
|
|
|
12.3 Error & warning messages :h4,link(err_3)
|
|
|
|
These are two alphabetic lists of the "ERROR"_#error and
|
|
"WARNING"_#warn messages LAMMPS prints out and the reason why. If the
|
|
explanation here is not sufficient, the documentation for the
|
|
offending command may help.
|
|
Error and warning messages also list the source file and line number
|
|
where the error was generated. For example, this message
|
|
|
|
ERROR: Illegal velocity command (velocity.cpp:78)
|
|
|
|
means that line #78 in the file src/velocity.cpp generated the error.
|
|
Looking in the source code may help you figure out what went wrong.
|
|
|
|
Note that error messages from "user-contributed
|
|
packages"_Section_start.html#start_3 are not listed here. If such an
|
|
error occurs and is not self-explanatory, you'll need to look in the
|
|
source code or contact the author of the package.
|
|
|
|
Errors: :h4,link(error)
|
|
|
|
:dlb
|
|
|
|
{1-3 bond count is inconsistent} :dt
|
|
|
|
An inconsistency was detected when computing the number of 1-3
|
|
neighbors for each atom. This likely means something is wrong with
|
|
the bond topologies you have defined. :dd
|
|
|
|
{1-4 bond count is inconsistent} :dt
|
|
|
|
An inconsistency was detected when computing the number of 1-4
|
|
neighbors for each atom. This likely means something is wrong with
|
|
the bond topologies you have defined. :dd
|
|
|
|
{Accelerator sharing is not currently supported on system} :dt
|
|
|
|
Multiple MPI processes cannot share the accelerator on your
|
|
system. For NVIDIA GPUs, see the nvidia-smi command to change this
|
|
setting. :dd
|
|
|
|
{All angle coeffs are not set} :dt
|
|
|
|
All angle coefficients must be set in the data file or by the
|
|
angle_coeff command before running a simulation. :dd
|
|
|
|
{All bond coeffs are not set} :dt
|
|
|
|
All bond coefficients must be set in the data file or by the
|
|
bond_coeff command before running a simulation. :dd
|
|
|
|
{All dihedral coeffs are not set} :dt
|
|
|
|
All dihedral coefficients must be set in the data file or by the
|
|
dihedral_coeff command before running a simulation. :dd
|
|
|
|
{All improper coeffs are not set} :dt
|
|
|
|
All improper coefficients must be set in the data file or by the
|
|
improper_coeff command before running a simulation. :dd
|
|
|
|
{All masses are not set} :dt
|
|
|
|
For atom styles that define masses for each atom type, all masses must
|
|
be set in the data file or by the mass command before running a
|
|
simulation. They must also be set before using the velocity
|
|
command. :dd
|
|
|
|
{All mol IDs should be set for fix gcmc group atoms} :dt
|
|
|
|
The molecule flag is on, yet not all molecule ids in the fix group have
|
|
been set to non-zero positive values by the user. This is an error since
|
|
all atoms in the fix gcmc group are eligible for deletion, rotation, and
|
|
translation and therefore must have valid molecule ids. :dd
|
|
|
|
{All pair coeffs are not set} :dt
|
|
|
|
All pair coefficients must be set in the data file or by the
|
|
pair_coeff command before running a simulation. :dd
|
|
|
|
{All read_dump x,y,z fields must be specified for scaled, triclinic coords} :dt
|
|
|
|
For triclinic boxes and scaled coordinates you must specify all 3 of
|
|
the x,y,z fields, else LAMMPS cannot reconstruct the unscaled
|
|
coordinates. :dd
|
|
|
|
{All universe/uloop variables must have same # of values} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{All variables in next command must be same style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Angle atom missing in delete_bonds} :dt
|
|
|
|
The delete_bonds command cannot find one or more atoms in a particular
|
|
angle on a particular processor. The pairwise cutoff is too short or
|
|
the atoms are too far apart to make a valid angle. :dd
|
|
|
|
{Angle atom missing in set command} :dt
|
|
|
|
The set command cannot find one or more atoms in a particular angle on
|
|
a particular processor. The pairwise cutoff is too short or the atoms
|
|
are too far apart to make a valid angle. :dd
|
|
|
|
{Angle atoms %d %d %d missing on proc %d at step %ld} :dt
|
|
|
|
One or more of 3 atoms needed to compute a particular angle are
|
|
missing on this processor. Typically this is because the pairwise
|
|
cutoff is set too short or the angle has blown apart and an atom is
|
|
too far away. :dd
|
|
|
|
{Angle coeff for hybrid has invalid style} :dt
|
|
|
|
Angle style hybrid uses another angle style as one of its
|
|
coefficients. The angle style used in the angle_coeff command or read
|
|
from a restart file is not recognized. :dd
|
|
|
|
{Angle coeffs are not set} :dt
|
|
|
|
No angle coefficients have been assigned in the data file or via the
|
|
angle_coeff command. :dd
|
|
|
|
{Angle extent > half of periodic box length} :dt
|
|
|
|
This error was detected by the neigh_modify check yes setting. It is
|
|
an error because the angle atoms are so far apart it is ambiguous how
|
|
it should be defined. :dd
|
|
|
|
{Angle potential must be defined for SHAKE} :dt
|
|
|
|
When shaking angles, an angle_style potential must be used. :dd
|
|
|
|
{Angle style hybrid cannot have hybrid as an argument} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Angle style hybrid cannot have none as an argument} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Angle style hybrid cannot use same angle style twice} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Angle table must range from 0 to 180 degrees} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Angle table parameters did not set N} :dt
|
|
|
|
List of angle table parameters must include N setting. :dd
|
|
|
|
{Angle_coeff command before angle_style is defined} :dt
|
|
|
|
Coefficients cannot be set in the data file or via the angle_coeff
|
|
command until an angle_style has been assigned. :dd
|
|
|
|
{Angle_coeff command before simulation box is defined} :dt
|
|
|
|
The angle_coeff command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Angle_coeff command when no angles allowed} :dt
|
|
|
|
The chosen atom style does not allow for angles to be defined. :dd
|
|
|
|
{Angle_style command when no angles allowed} :dt
|
|
|
|
The chosen atom style does not allow for angles to be defined. :dd
|
|
|
|
{Angles assigned incorrectly} :dt
|
|
|
|
Angles read in from the data file were not assigned correctly to
|
|
atoms. This means there is something invalid about the topology
|
|
definitions. :dd
|
|
|
|
{Angles defined but no angle types} :dt
|
|
|
|
The data file header lists angles but no angle types. :dd
|
|
|
|
{Append boundary must be shrink/minimum} :dt
|
|
|
|
The boundary style of the face where atoms are added
|
|
must be of type m (shrink/minimum). :dd
|
|
|
|
{Arccos of invalid value in variable formula} :dt
|
|
|
|
Argument of arccos() must be between -1 and 1. :dd
|
|
|
|
{Arcsin of invalid value in variable formula} :dt
|
|
|
|
Argument of arcsin() must be between -1 and 1. :dd
|
|
|
|
{Assigning body parameters to non-body atom} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Assigning ellipsoid parameters to non-ellipsoid atom} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Assigning line parameters to non-line atom} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Assigning tri parameters to non-tri atom} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Atom ID is negative} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Atom ID is too big} :dt
|
|
|
|
The limit on atom IDs is set by the SMALLBIG, BIGBIG, SMALLSMALL
|
|
setting in your Makefile. See Section_start 2.2 of the manual for
|
|
more details. :dd
|
|
|
|
{Atom ID is zero} :dt
|
|
|
|
Either all atoms IDs must be zero or none of them. :dd
|
|
|
|
{Atom IDs must be consecutive for velocity create loop all} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Atom IDs must be used for molecular systems} :dt
|
|
|
|
Atom IDs are used to identify and find partner atoms in bonds. :dd
|
|
|
|
{Atom count changed in fix neb} :dt
|
|
|
|
This is not allowed in a NEB calculation. :dd
|
|
|
|
{Atom count is inconsistent, cannot write data file} :dt
|
|
|
|
The sum of atoms across processors does not equal the global number
|
|
of atoms. Probably some atoms have been lost. :dd
|
|
|
|
{Atom count is inconsistent, cannot write restart file} :dt
|
|
|
|
Sum of atoms across processors does not equal initial total count.
|
|
This is probably because you have lost some atoms. :dd
|
|
|
|
{Atom in too many rigid bodies - boost MAXBODY} :dt
|
|
|
|
Fix poems has a parameter MAXBODY (in fix_poems.cpp) which determines
|
|
the maximum number of rigid bodies a single atom can belong to (i.e. a
|
|
multibody joint). The bodies you have defined exceed this limit. :dd
|
|
|
|
{Atom sort did not operate correctly} :dt
|
|
|
|
This is an internal LAMMPS error. Please report it to the
|
|
developers. :dd
|
|
|
|
{Atom sorting has bin size = 0.0} :dt
|
|
|
|
The neighbor cutoff is being used as the bin size, but it is zero.
|
|
Thus you must explicitly list a bin size in the atom_modify sort
|
|
command or turn off sorting. :dd
|
|
|
|
{Atom style hybrid cannot have hybrid as an argument} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Atom style hybrid cannot use same atom style twice} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Atom style template molecule must have atom types} :dt
|
|
|
|
The defined molecule(s) does not specify atom types. :dd
|
|
|
|
{Atom style was redefined after using fix property/atom} :dt
|
|
|
|
This is not allowed. :dd
|
|
|
|
{Atom vector in equal-style variable formula} :dt
|
|
|
|
Atom vectors generate one value per atom which is not allowed
|
|
in an equal-style variable. :dd
|
|
|
|
{Atom-style variable in equal-style variable formula} :dt
|
|
|
|
Atom-style variables generate one value per atom which is not allowed
|
|
in an equal-style variable. :dd
|
|
|
|
{Atom_modify id command after simulation box is defined} :dt
|
|
|
|
The atom_modify id command cannot be used after a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Atom_modify map command after simulation box is defined} :dt
|
|
|
|
The atom_modify map command cannot be used after a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Atom_modify sort and first options cannot be used together} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Atom_style command after simulation box is defined} :dt
|
|
|
|
The atom_style command cannot be used after a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Atom_style line can only be used in 2d simulations} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Atom_style tri can only be used in 3d simulations} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Atomfile variable could not read values} :dt
|
|
|
|
Check the file assigned to the variable. :dd
|
|
|
|
{Atomfile variable in equal-style variable formula} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Atomfile-style variable in equal-style variable formula} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Attempt to pop empty stack in fix box/relax} :dt
|
|
|
|
Internal LAMMPS error. Please report it to the developers. :dd
|
|
|
|
{Attempt to push beyond stack limit in fix box/relax} :dt
|
|
|
|
Internal LAMMPS error. Please report it to the developers. :dd
|
|
|
|
{Attempting to rescale a 0.0 temperature} :dt
|
|
|
|
Cannot rescale a temperature that is already 0.0. :dd
|
|
|
|
{Bad FENE bond} :dt
|
|
|
|
Two atoms in a FENE bond have become so far apart that the bond cannot
|
|
be computed. :dd
|
|
|
|
{Bad TIP4P angle type for PPPM/TIP4P} :dt
|
|
|
|
Specified angle type is not valid. :dd
|
|
|
|
{Bad TIP4P angle type for PPPMDisp/TIP4P} :dt
|
|
|
|
Specified angle type is not valid. :dd
|
|
|
|
{Bad TIP4P bond type for PPPM/TIP4P} :dt
|
|
|
|
Specified bond type is not valid. :dd
|
|
|
|
{Bad TIP4P bond type for PPPMDisp/TIP4P} :dt
|
|
|
|
Specified bond type is not valid. :dd
|
|
|
|
{Bad fix ID in fix append/atoms command} :dt
|
|
|
|
The value of the fix_id for keyword spatial must start with the suffix
|
|
f_. :dd
|
|
|
|
{Bad grid of processors} :dt
|
|
|
|
The 3d grid of processors defined by the processors command does not
|
|
match the number of processors LAMMPS is being run on. :dd
|
|
|
|
{Bad kspace_modify kmax/ewald parameter} :dt
|
|
|
|
Kspace_modify values for the kmax/ewald keyword must be integers > 0 :dd
|
|
|
|
{Bad kspace_modify slab parameter} :dt
|
|
|
|
Kspace_modify value for the slab/volume keyword must be >= 2.0. :dd
|
|
|
|
{Bad matrix inversion in mldivide3} :dt
|
|
|
|
This error should not occur unless the matrix is badly formed. :dd
|
|
|
|
{Bad principal moments} :dt
|
|
|
|
Fix rigid did not compute the principal moments of inertia of a rigid
|
|
group of atoms correctly. :dd
|
|
|
|
{Bad quadratic solve for particle/line collision} :dt
|
|
|
|
This is an internal error. It should nornally not occur. :dd
|
|
|
|
{Bad quadratic solve for particle/tri collision} :dt
|
|
|
|
This is an internal error. It should nornally not occur. :dd
|
|
|
|
{Bad real space Coulomb cutoff in fix tune/kspace} :dt
|
|
|
|
Fix tune/kspace tried to find the optimal real space Coulomb cutoff using
|
|
the Newton-Rhaphson method, but found a non-positive or NaN cutoff :dd
|
|
|
|
{Balance command before simulation box is defined} :dt
|
|
|
|
The balance command cannot be used before a read_data, read_restart,
|
|
or create_box command. :dd
|
|
|
|
{Balance dynamic string is invalid} :dt
|
|
|
|
The string can only contain the characters "x", "y", or "z". :dd
|
|
|
|
{Balance produced bad splits} :dt
|
|
|
|
This should not occur. It means two or more cutting plane locations
|
|
are on top of each other or out of order. Report the problem to the
|
|
developers. :dd
|
|
|
|
{Bias compute does not calculate a velocity bias} :dt
|
|
|
|
The specified compute must compute a bias for temperature. :dd
|
|
|
|
{Bias compute does not calculate temperature} :dt
|
|
|
|
The specified compute must compute temperature. :dd
|
|
|
|
{Bias compute group does not match compute group} :dt
|
|
|
|
The specified compute must operate on the same group as the parent
|
|
compute. :dd
|
|
|
|
{Big particle in fix srd cannot be point particle} :dt
|
|
|
|
Big particles must be extended spheriods or ellipsoids. :dd
|
|
|
|
{Bigint setting in lmptype.h is invalid} :dt
|
|
|
|
Size of bigint is less than size of tagint. :dd
|
|
|
|
{Bigint setting in lmptype.h is not compatible} :dt
|
|
|
|
Format of bigint stored in restart file is not consistent with LAMMPS
|
|
version you are running. See the settings in src/lmptype.h :dd
|
|
|
|
{Bitmapped lookup tables require int/float be same size} :dt
|
|
|
|
Cannot use pair tables on this machine, because of word sizes. Use
|
|
the pair_modify command with table 0 instead. :dd
|
|
|
|
{Bitmapped table in file does not match requested table} :dt
|
|
|
|
Setting for bitmapped table in pair_coeff command must match table
|
|
in file exactly. :dd
|
|
|
|
{Bitmapped table is incorrect length in table file} :dt
|
|
|
|
Number of table entries is not a correct power of 2. :dd
|
|
|
|
{Bond and angle potentials must be defined for TIP4P} :dt
|
|
|
|
Cannot use TIP4P pair potential unless bond and angle potentials
|
|
are defined. :dd
|
|
|
|
{Bond atom missing in box size check} :dt
|
|
|
|
The 2nd atoms needed to compute a particular bond is missing on this
|
|
processor. Typically this is because the pairwise cutoff is set too
|
|
short or the bond has blown apart and an atom is too far away. :dd
|
|
|
|
{Bond atom missing in delete_bonds} :dt
|
|
|
|
The delete_bonds command cannot find one or more atoms in a particular
|
|
bond on a particular processor. The pairwise cutoff is too short or
|
|
the atoms are too far apart to make a valid bond. :dd
|
|
|
|
{Bond atom missing in image check} :dt
|
|
|
|
The 2nd atom in a particular bond is missing on this processor.
|
|
Typically this is because the pairwise cutoff is set too short or the
|
|
bond has blown apart and an atom is too far away. :dd
|
|
|
|
{Bond atom missing in set command} :dt
|
|
|
|
The set command cannot find one or more atoms in a particular bond on
|
|
a particular processor. The pairwise cutoff is too short or the atoms
|
|
are too far apart to make a valid bond. :dd
|
|
|
|
{Bond atoms %d %d missing on proc %d at step %ld} :dt
|
|
|
|
The 2nd atom needed to compute a particular bond is missing on this
|
|
processor. Typically this is because the pairwise cutoff is set too
|
|
short or the bond has blown apart and an atom is too far away. :dd
|
|
|
|
{Bond coeff for hybrid has invalid style} :dt
|
|
|
|
Bond style hybrid uses another bond style as one of its coefficients.
|
|
The bond style used in the bond_coeff command or read from a restart
|
|
file is not recognized. :dd
|
|
|
|
{Bond coeffs are not set} :dt
|
|
|
|
No bond coefficients have been assigned in the data file or via the
|
|
bond_coeff command. :dd
|
|
|
|
{Bond extent > half of periodic box length} :dt
|
|
|
|
This error was detected by the neigh_modify check yes setting. It is
|
|
an error because the bond atoms are so far apart it is ambiguous how
|
|
it should be defined. :dd
|
|
|
|
{Bond potential must be defined for SHAKE} :dt
|
|
|
|
Cannot use fix shake unless bond potential is defined. :dd
|
|
|
|
{Bond style hybrid cannot have hybrid as an argument} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Bond style hybrid cannot have none as an argument} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Bond style hybrid cannot use same bond style twice} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Bond style quartic cannot be used with 3,4-body interactions} :dt
|
|
|
|
No angle, dihedral, or improper styles can be defined when using
|
|
bond style quartic. :dd
|
|
|
|
{Bond style quartic cannot be used with atom style template} :dt
|
|
|
|
This bond style can change the bond topology which is not
|
|
allowed with this atom style. :dd
|
|
|
|
{Bond style quartic requires special_bonds = 1,1,1} :dt
|
|
|
|
This is a restriction of the current bond quartic implementation. :dd
|
|
|
|
{Bond table parameters did not set N} :dt
|
|
|
|
List of bond table parameters must include N setting. :dd
|
|
|
|
{Bond table values are not increasing} :dt
|
|
|
|
The values in the tabulated file must be monotonically increasing. :dd
|
|
|
|
{Bond_coeff command before bond_style is defined} :dt
|
|
|
|
Coefficients cannot be set in the data file or via the bond_coeff
|
|
command until an bond_style has been assigned. :dd
|
|
|
|
{Bond_coeff command before simulation box is defined} :dt
|
|
|
|
The bond_coeff command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Bond_coeff command when no bonds allowed} :dt
|
|
|
|
The chosen atom style does not allow for bonds to be defined. :dd
|
|
|
|
{Bond_style command when no bonds allowed} :dt
|
|
|
|
The chosen atom style does not allow for bonds to be defined. :dd
|
|
|
|
{Bonds assigned incorrectly} :dt
|
|
|
|
Bonds read in from the data file were not assigned correctly to atoms.
|
|
This means there is something invalid about the topology definitions. :dd
|
|
|
|
{Bonds defined but no bond types} :dt
|
|
|
|
The data file header lists bonds but no bond types. :dd
|
|
|
|
{Both restart files must use % or neither} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Both restart files must use MPI-IO or neither} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Both sides of boundary must be periodic} :dt
|
|
|
|
Cannot specify a boundary as periodic only on the lo or hi side. Must
|
|
be periodic on both sides. :dd
|
|
|
|
{Boundary command after simulation box is defined} :dt
|
|
|
|
The boundary command cannot be used after a read_data, read_restart,
|
|
or create_box command. :dd
|
|
|
|
{Box bounds are invalid} :dt
|
|
|
|
The box boundaries specified in the read_data file are invalid. The
|
|
lo value must be less than the hi value for all 3 dimensions. :dd
|
|
|
|
{Box command after simulation box is defined} :dt
|
|
|
|
The box command cannot be used after a read_data, read_restart, or
|
|
create_box command. :dd
|
|
|
|
{CPU neighbor lists must be used for ellipsoid/sphere mix.} :dt
|
|
|
|
When using Gay-Berne or RE-squared pair styles with both ellipsoidal and
|
|
spherical particles, the neighbor list must be built on the CPU :dd
|
|
|
|
{Can not specify Pxy/Pxz/Pyz in fix box/relax with non-triclinic box} :dt
|
|
|
|
Only triclinic boxes can be used with off-diagonal pressure components.
|
|
See the region prism command for details. :dd
|
|
|
|
{Can not specify Pxy/Pxz/Pyz in fix nvt/npt/nph with non-triclinic box} :dt
|
|
|
|
Only triclinic boxes can be used with off-diagonal pressure components.
|
|
See the region prism command for details. :dd
|
|
|
|
{Can only use -plog with multiple partitions} :dt
|
|
|
|
Self-explanatory. See doc page discussion of command-line switches. :dd
|
|
|
|
{Can only use -pscreen with multiple partitions} :dt
|
|
|
|
Self-explanatory. See doc page discussion of command-line switches. :dd
|
|
|
|
{Can only use NEB with 1-processor replicas} :dt
|
|
|
|
This is current restriction for NEB as implemented in LAMMPS. :dd
|
|
|
|
{Can only use TAD with 1-processor replicas for NEB} :dt
|
|
|
|
This is current restriction for NEB as implemented in LAMMPS. :dd
|
|
|
|
{Cannot (yet) do analytic differentiation with pppm/gpu} :dt
|
|
|
|
This is a current restriction of this command. :dd
|
|
|
|
{Cannot (yet) use 'electron' units with dipoles} :dt
|
|
|
|
This feature is not yet supported. :dd
|
|
|
|
{Cannot (yet) use Ewald with triclinic box and slab correction} :dt
|
|
|
|
This feature is not yet supported. :dd
|
|
|
|
{Cannot (yet) use K-space slab correction with compute group/group} :dt
|
|
|
|
This option is not yet supported. :dd
|
|
|
|
{Cannot (yet) use K-space slab correction with compute group/group for triclinic systems} :dt
|
|
|
|
This option is not yet supported. :dd
|
|
|
|
{Cannot (yet) use MSM with 2d simulation} :dt
|
|
|
|
This feature is not yet supported. :dd
|
|
|
|
{Cannot (yet) use PPPM with triclinic box and TIP4P} :dt
|
|
|
|
This feature is not yet supported. :dd
|
|
|
|
{Cannot (yet) use PPPM with triclinic box and kspace_modify diff ad} :dt
|
|
|
|
This feature is not yet supported. :dd
|
|
|
|
{Cannot (yet) use PPPM with triclinic box and slab correction} :dt
|
|
|
|
This feature is not yet supported. :dd
|
|
|
|
{Cannot (yet) use kspace slab correction with long-range dipoles and non-neutral systems or per-atom energy} :dt
|
|
|
|
This feature is not yet supported. :dd
|
|
|
|
{Cannot (yet) use kspace_modify diff ad with compute group/group} :dt
|
|
|
|
This option is not yet supported. :dd
|
|
|
|
{Cannot (yet) use kspace_style pppm/stagger with triclinic systems} :dt
|
|
|
|
This feature is not yet supported. :dd
|
|
|
|
{Cannot (yet) use single precision with MSM (remove -DFFT_SINGLE from Makefile and recompile)} :dt
|
|
|
|
Single precision cannot be used with MSM. :dd
|
|
|
|
{Cannot add atoms to fix move variable} :dt
|
|
|
|
Atoms can not be added afterwards to this fix option. :dd
|
|
|
|
{Cannot append atoms to a triclinic box} :dt
|
|
|
|
The simulation box must be defined with edges alligned with the
|
|
Cartesian axes. :dd
|
|
|
|
{Cannot balance in z dimension for 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot change box ortho/triclinic with certain fixes defined} :dt
|
|
|
|
This is because those fixes store the shape of the box. You need to
|
|
use unfix to discard the fix, change the box, then redefine a new
|
|
fix. :dd
|
|
|
|
{Cannot change box ortho/triclinic with dumps defined} :dt
|
|
|
|
This is because some dumps store the shape of the box. You need to
|
|
use undump to discard the dump, change the box, then redefine a new
|
|
dump. :dd
|
|
|
|
{Cannot change box tilt factors for orthogonal box} :dt
|
|
|
|
Cannot use tilt factors unless the simulation box is non-orthogonal. :dd
|
|
|
|
{Cannot change box to orthogonal when tilt is non-zero} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot change box z boundary to nonperiodic for a 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot change dump_modify every for dump dcd} :dt
|
|
|
|
The frequency of writing dump dcd snapshots cannot be changed. :dd
|
|
|
|
{Cannot change dump_modify every for dump xtc} :dt
|
|
|
|
The frequency of writing dump xtc snapshots cannot be changed. :dd
|
|
|
|
{Cannot change timestep once fix srd is setup} :dt
|
|
|
|
This is because various SRD properties depend on the timestep
|
|
size. :dd
|
|
|
|
{Cannot change timestep with fix pour} :dt
|
|
|
|
This is because fix pour pre-computes the time delay for particles to
|
|
fall out of the insertion volume due to gravity. :dd
|
|
|
|
{Cannot change_box after reading restart file with per-atom info} :dt
|
|
|
|
This is because the restart file info cannot be migrated with the
|
|
atoms. You can get around this by performing a 0-timestep run which
|
|
will assign the restart file info to actual atoms. :dd
|
|
|
|
{Cannot change_box in xz or yz for 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot change_box in z dimension for 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot close restart file - MPI error: %s} :dt
|
|
|
|
This error was generated by MPI when reading/writing an MPI-IO restart
|
|
file. :dd
|
|
|
|
{Cannot compute PPPM G} :dt
|
|
|
|
The Ewald factor could not be computed for the current choice of
|
|
grid size, cutoff, accuracy. :dd
|
|
|
|
{Cannot compute initial g_ewald_disp} :dt
|
|
|
|
LAMMPS failed to compute an initial guess for the PPPM_disp g_ewald_6
|
|
factor that partitions the computation between real space and k-space
|
|
for Disptersion interactions. :dd
|
|
|
|
{Cannot create an atom map unless atoms have IDs} :dt
|
|
|
|
The simulation requires a mapping from global atom IDs to local atoms,
|
|
but the atoms that have been defined have no IDs. :dd
|
|
|
|
{Cannot create atoms with undefined lattice} :dt
|
|
|
|
Must use the lattice command before using the create_atoms
|
|
command. :dd
|
|
|
|
{Cannot create/grow a vector/array of pointers for %s} :dt
|
|
|
|
LAMMPS code is making an illegal call to the templated memory
|
|
allocaters, to create a vector or array of pointers. :dd
|
|
|
|
{Cannot create_atoms after reading restart file with per-atom info} :dt
|
|
|
|
The per-atom info was stored to be used when by a fix that you may
|
|
re-define. If you add atoms before re-defining the fix, then there
|
|
will not be a correct amount of per-atom info. :dd
|
|
|
|
{Cannot create_box after simulation box is defined} :dt
|
|
|
|
A simulation box can only be defined once. :dd
|
|
|
|
{Cannot currently use pair reax with pair hybrid} :dt
|
|
|
|
This is not yet supported. :dd
|
|
|
|
{Cannot currently use pppm/gpu with fix balance.} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot delete group all} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot delete group currently used by a compute} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot delete group currently used by a dump} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot delete group currently used by a fix} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot delete group currently used by atom_modify first} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot displace_atoms after reading restart file with per-atom info} :dt
|
|
|
|
This is because the restart file info cannot be migrated with the
|
|
atoms. You can get around this by performing a 0-timestep run which
|
|
will assign the restart file info to actual atoms. :dd
|
|
|
|
{Cannot do GCMC on atoms in atom_modify first group} :dt
|
|
|
|
This is a restriction due to the way atoms are organized in a list to
|
|
enable the atom_modify first command. :dd
|
|
|
|
{Cannot dump sort on atom IDs with no atom IDs defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot dump sort when multiple dump files are written} :dt
|
|
|
|
In this mode, each processor dumps its atoms to a file, so
|
|
no sorting is allowed. :dd
|
|
|
|
{Cannot evaporate atoms in atom_modify first group} :dt
|
|
|
|
This is a restriction due to the way atoms are organized in
|
|
a list to enable the atom_modify first command. :dd
|
|
|
|
{Cannot find delete_bonds group ID} :dt
|
|
|
|
Group ID used in the delete_bonds command does not exist. :dd
|
|
|
|
{Cannot have both pair_modify shift and tail set to yes} :dt
|
|
|
|
These 2 options are contradictory. :dd
|
|
|
|
{Cannot mix molecular and molecule template atom styles} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot open -reorder file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot open ADP potential file %s} :dt
|
|
|
|
The specified ADP potential file cannot be opened. Check that the
|
|
path and name are correct. :dd
|
|
|
|
{Cannot open AIREBO potential file %s} :dt
|
|
|
|
The specified AIREBO potential file cannot be opened. Check that the
|
|
path and name are correct. :dd
|
|
|
|
{Cannot open BOP potential file %s} :dt
|
|
|
|
The specified BOP potential file cannot be opened. Check that the
|
|
path and name are correct. :dd
|
|
|
|
{Cannot open COMB potential file %s} :dt
|
|
|
|
The specified COMB potential file cannot be opened. Check that the
|
|
path and name are correct. :dd
|
|
|
|
{Cannot open COMB3 C library file} :dt
|
|
|
|
The extra lib.comb3 file for carbon cannot be opened. Check that it
|
|
exists. :dd
|
|
|
|
{Cannot open COMB3 potential file %s} :dt
|
|
|
|
The specified COMB potential file cannot be opened. Check that the
|
|
path and name are correct. :dd
|
|
|
|
{Cannot open EAM potential file %s} :dt
|
|
|
|
The specified EAM potential file cannot be opened. Check that the
|
|
path and name are correct. :dd
|
|
|
|
{Cannot open EIM potential file %s} :dt
|
|
|
|
The specified EIM potential file cannot be opened. Check that the
|
|
path and name are correct. :dd
|
|
|
|
{Cannot open LCBOP potential file %s} :dt
|
|
|
|
The specified LCBOP potential file cannot be opened. Check that the
|
|
path and name are correct. :dd
|
|
|
|
{Cannot open MEAM potential file %s} :dt
|
|
|
|
The specified MEAM potential file cannot be opened. Check that the
|
|
path and name are correct. :dd
|
|
|
|
{Cannot open Stillinger-Weber potential file %s} :dt
|
|
|
|
The specified SW potential file cannot be opened. Check that the path
|
|
and name are correct. :dd
|
|
|
|
{Cannot open Tersoff potential file %s} :dt
|
|
|
|
The specified potential file cannot be opened. Check that the path
|
|
and name are correct. :dd
|
|
|
|
{Cannot open balance output file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot open custom file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot open data file %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. :dd
|
|
|
|
{Cannot open dir to search for restart file} :dt
|
|
|
|
Using a "*" in the name of the restart file will open the current
|
|
directory to search for matching file names. :dd
|
|
|
|
{Cannot open dump file} :dt
|
|
|
|
The output file for the dump command cannot be opened. Check that the
|
|
path and name are correct. :dd
|
|
|
|
{Cannot open file %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. If the file is a compressed file, also check that the gzip
|
|
executable can be found and run. :dd
|
|
|
|
{Cannot open file variable file %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. :dd
|
|
|
|
{Cannot open fix ave/correlate file %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. :dd
|
|
|
|
{Cannot open fix ave/histo file %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. :dd
|
|
|
|
{Cannot open fix ave/spatial file %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. :dd
|
|
|
|
{Cannot open fix ave/time file %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. :dd
|
|
|
|
{Cannot open fix balance output file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot open fix poems file %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. :dd
|
|
|
|
{Cannot open fix print file %s} :dt
|
|
|
|
The output file generated by the fix print command cannot be opened :dd
|
|
|
|
{Cannot open fix qeq/comb file %s} :dt
|
|
|
|
The output file for the fix qeq/combs command cannot be opened.
|
|
Check that the path and name are correct. :dd
|
|
|
|
{Cannot open fix reax/bonds file %s} :dt
|
|
|
|
The output file for the fix reax/bonds command cannot be opened.
|
|
Check that the path and name are correct. :dd
|
|
|
|
{Cannot open fix rigid infile %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. :dd
|
|
|
|
{Cannot open fix rigid restart file %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. :dd
|
|
|
|
{Cannot open fix rigid/small infile %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. :dd
|
|
|
|
{Cannot open fix tmd file %s} :dt
|
|
|
|
The output file for the fix tmd command cannot be opened. Check that
|
|
the path and name are correct. :dd
|
|
|
|
{Cannot open fix ttm file %s} :dt
|
|
|
|
The output file for the fix ttm command cannot be opened. Check that
|
|
the path and name are correct. :dd
|
|
|
|
{Cannot open gzipped file} :dt
|
|
|
|
LAMMPS was compiled without support for reading and writing gzipped
|
|
files through a pipeline to the gzip program with -DLAMMPS_GZIP. :dd
|
|
|
|
{Cannot open input script %s} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot open log.cite file} :dt
|
|
|
|
This file is created when you use some LAMMPS features, to indicate
|
|
what paper you should cite on behalf of those who implemented
|
|
the feature. Check that you have write priveleges into the directory
|
|
you are running in. :dd
|
|
|
|
{Cannot open log.lammps for writing} :dt
|
|
|
|
The default LAMMPS log file cannot be opened. Check that the
|
|
directory you are running in allows for files to be created. :dd
|
|
|
|
{Cannot open logfile} :dt
|
|
|
|
The LAMMPS log file named in a command-line argument cannot be opened.
|
|
Check that the path and name are correct. :dd
|
|
|
|
{Cannot open logfile %s} :dt
|
|
|
|
The LAMMPS log file specified in the input script cannot be opened.
|
|
Check that the path and name are correct. :dd
|
|
|
|
{Cannot open molecule file %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct. :dd
|
|
|
|
{Cannot open nb3b/harmonic potential file %s} :dt
|
|
|
|
The specified potential file cannot be opened. Check that the path
|
|
and name are correct. :dd
|
|
|
|
{Cannot open pair_write file} :dt
|
|
|
|
The specified output file for pair energies and forces cannot be
|
|
opened. Check that the path and name are correct. :dd
|
|
|
|
{Cannot open print file %s} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot open processors output file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot open restart file %s} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot open restart file for reading - MPI error: %s} :dt
|
|
|
|
This error was generated by MPI when reading/writing an MPI-IO restart
|
|
file. :dd
|
|
|
|
{Cannot open restart file for writing - MPI error: %s} :dt
|
|
|
|
This error was generated by MPI when reading/writing an MPI-IO restart
|
|
file. :dd
|
|
|
|
{Cannot open screen file} :dt
|
|
|
|
The screen file specified as a command-line argument cannot be
|
|
opened. Check that the directory you are running in allows for files
|
|
to be created. :dd
|
|
|
|
{Cannot open universe log file} :dt
|
|
|
|
For a multi-partition run, the master log file cannot be opened.
|
|
Check that the directory you are running in allows for files to be
|
|
created. :dd
|
|
|
|
{Cannot open universe screen file} :dt
|
|
|
|
For a multi-partition run, the master screen file cannot be opened.
|
|
Check that the directory you are running in allows for files to be
|
|
created. :dd
|
|
|
|
{Cannot read from restart file - MPI error: %s} :dt
|
|
|
|
This error was generated by MPI when reading/writing an MPI-IO restart
|
|
file. :dd
|
|
|
|
{Cannot read_data after simulation box is defined} :dt
|
|
|
|
The read_data command cannot be used after a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Cannot read_restart after simulation box is defined} :dt
|
|
|
|
The read_restart command cannot be used after a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Cannot redefine variable as a different style} :dt
|
|
|
|
An equal-style variable can be re-defined but only if it was
|
|
originally an equal-style variable. :dd
|
|
|
|
{Cannot replicate 2d simulation in z dimension} :dt
|
|
|
|
The replicate command cannot replicate a 2d simulation in the z
|
|
dimension. :dd
|
|
|
|
{Cannot replicate with fixes that store atom quantities} :dt
|
|
|
|
Either fixes are defined that create and store atom-based vectors or a
|
|
restart file was read which included atom-based vectors for fixes.
|
|
The replicate command cannot duplicate that information for new atoms.
|
|
You should use the replicate command before fixes are applied to the
|
|
system. :dd
|
|
|
|
{Cannot reset timestep with a dynamic region defined} :dt
|
|
|
|
Dynamic regions (see the region command) have a time dependence.
|
|
Thus you cannot change the timestep when one or more of these
|
|
are defined. :dd
|
|
|
|
{Cannot reset timestep with a time-dependent fix defined} :dt
|
|
|
|
You cannot reset the timestep when a fix that keeps track of elapsed
|
|
time is in place. :dd
|
|
|
|
{Cannot run 2d simulation with nonperiodic Z dimension} :dt
|
|
|
|
Use the boundary command to make the z dimension periodic in order to
|
|
run a 2d simulation. :dd
|
|
|
|
{Cannot set bond topology types for atom style template} :dt
|
|
|
|
The bond, angle, etc types cannot be changed for this atom style since
|
|
they are static settings in the molecule template files. :dd
|
|
|
|
{Cannot set both respa pair and inner/middle/outer} :dt
|
|
|
|
In the rRESPA integrator, you must compute pairwise potentials either
|
|
all together (pair), or in pieces (inner/middle/outer). You can't do
|
|
both. :dd
|
|
|
|
{Cannot set dump_modify flush for dump xtc} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot set mass for this atom style} :dt
|
|
|
|
This atom style does not support mass settings for each atom type.
|
|
Instead they are defined on a per-atom basis in the data file. :dd
|
|
|
|
{Cannot set meso_rho for this atom style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot set non-zero image flag for non-periodic dimension} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot set non-zero z velocity for 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot set quaternion for atom that has none} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot set respa middle without inner/outer} :dt
|
|
|
|
In the rRESPA integrator, you must define both a inner and outer
|
|
setting in order to use a middle setting. :dd
|
|
|
|
{Cannot set restart file size - MPI error: %s} :dt
|
|
|
|
This error was generated by MPI when reading/writing an MPI-IO restart
|
|
file. :dd
|
|
|
|
{Cannot set temperature for fix rigid/nph} :dt
|
|
|
|
The temp keyword cannot be specified. :dd
|
|
|
|
{Cannot set theta for atom that is not a line} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot set this attribute for this atom style} :dt
|
|
|
|
The attribute being set does not exist for the defined atom style. :dd
|
|
|
|
{Cannot set variable z velocity for 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot skew triclinic box in z for 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use -cuda on without USER-CUDA installed} :dt
|
|
|
|
The USER-CUDA package must be installed via "make yes-user-cuda"
|
|
before LAMMPS is built. :dd
|
|
|
|
{Cannot use -reorder after -partition} :dt
|
|
|
|
Self-explanatory. See doc page discussion of command-line switches. :dd
|
|
|
|
{Cannot use Ewald with 2d simulation} :dt
|
|
|
|
The kspace style ewald cannot be used in 2d simulations. You can use
|
|
2d Ewald in a 3d simulation; see the kspace_modify command. :dd
|
|
|
|
{Cannot use Ewald/disp solver on system with no charge, dipole, or LJ particles} :dt
|
|
|
|
No atoms in system have a non-zero charge or dipole, or are LJ particles. Change
|
|
charges/dipoles or change options of the kspace solver/pair style. :dd
|
|
|
|
{Cannot use EwaldDisp with 2d simulation} :dt
|
|
|
|
This is a current restriction of this command. :dd
|
|
|
|
{Cannot use NEB unless atom map exists} :dt
|
|
|
|
Use the atom_modify command to create an atom map. :dd
|
|
|
|
{Cannot use NEB with a single replica} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use NEB with atom_modify sort enabled} :dt
|
|
|
|
This is current restriction for NEB implemented in LAMMPS. :dd
|
|
|
|
{Cannot use PPPM with 2d simulation} :dt
|
|
|
|
The kspace style pppm cannot be used in 2d simulations. You can use
|
|
2d PPPM in a 3d simulation; see the kspace_modify command. :dd
|
|
|
|
{Cannot use PPPMDisp with 2d simulation} :dt
|
|
|
|
The kspace style pppm/disp cannot be used in 2d simulations. You can
|
|
use 2d pppm/disp in a 3d simulation; see the kspace_modify command. :dd
|
|
|
|
{Cannot use PRD with a changing box} :dt
|
|
|
|
The current box dimensions are not copied between replicas :dd
|
|
|
|
{Cannot use PRD with a time-dependent fix defined} :dt
|
|
|
|
PRD alters the timestep in ways that will mess up these fixes. :dd
|
|
|
|
{Cannot use PRD with a time-dependent region defined} :dt
|
|
|
|
PRD alters the timestep in ways that will mess up these regions. :dd
|
|
|
|
{Cannot use PRD with atom_modify sort enabled} :dt
|
|
|
|
This is a current restriction of PRD. You must turn off sorting,
|
|
which is enabled by default, via the atom_modify command. :dd
|
|
|
|
{Cannot use PRD with multi-processor replicas unless atom map exists} :dt
|
|
|
|
Use the atom_modify command to create an atom map. :dd
|
|
|
|
{Cannot use TAD unless atom map exists for NEB} :dt
|
|
|
|
See atom_modify map command to set this. :dd
|
|
|
|
{Cannot use TAD with a single replica for NEB} :dt
|
|
|
|
NEB requires multiple replicas. :dd
|
|
|
|
{Cannot use TAD with atom_modify sort enabled for NEB} :dt
|
|
|
|
This is a current restriction of NEB. :dd
|
|
|
|
{Cannot use a damped dynamics min style with fix box/relax} :dt
|
|
|
|
This is a current restriction in LAMMPS. Use another minimizer
|
|
style. :dd
|
|
|
|
{Cannot use a damped dynamics min style with per-atom DOF} :dt
|
|
|
|
This is a current restriction in LAMMPS. Use another minimizer
|
|
style. :dd
|
|
|
|
{Cannot use append/atoms in periodic dimension} :dt
|
|
|
|
The boundary style of the face where atoms are added can not be of
|
|
type p (periodic). :dd
|
|
|
|
{Cannot use atomfile-style variable unless atom map exists} :dt
|
|
|
|
Self-explanatory. See the atom_modify command to create a map. :dd
|
|
|
|
{Cannot use compute cluster/atom unless atoms have IDs} :dt
|
|
|
|
Atom IDs are used to identify clusters. :dd
|
|
|
|
{Cannot use cwiggle in variable formula between runs} :dt
|
|
|
|
This is a function of elapsed time. :dd
|
|
|
|
{Cannot use delete_atoms unless atoms have IDs} :dt
|
|
|
|
Your atoms do not have IDs, so the delete_atoms command cannot be
|
|
used. :dd
|
|
|
|
{Cannot use delete_bonds with non-molecular system} :dt
|
|
|
|
Your choice of atom style does not have bonds. :dd
|
|
|
|
{Cannot use dump_modify fileper without % in dump file name} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use dump_modify nfile without % in dump file name} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix GPU with USER-CUDA mode enabled} :dt
|
|
|
|
You cannot use both the GPU and USER-CUDA packages
|
|
together. Use one or the other. :dd
|
|
|
|
{Cannot use fix TMD unless atom map exists} :dt
|
|
|
|
Using this fix requires the ability to lookup an atom index, which is
|
|
provided by an atom map. An atom map does not exist (by default) for
|
|
non-molecular problems. Using the atom_modify map command will force
|
|
an atom map to be created. :dd
|
|
|
|
{Cannot use fix ave/spatial z for 2 dimensional model} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix bond/break with non-molecular systems} :dt
|
|
|
|
Only systems with bonds that can be changed can be used. Atom_style
|
|
template does not qualify. :dd
|
|
|
|
{Cannot use fix bond/create with non-molecular systems} :dt
|
|
|
|
Only systems with bonds that can be changed can be used. Atom_style
|
|
template does not qualify. :dd
|
|
|
|
{Cannot use fix bond/swap with non-molecular systems} :dt
|
|
|
|
Only systems with bonds that can be changed can be used. Atom_style
|
|
template does not qualify. :dd
|
|
|
|
{Cannot use fix box/relax on a 2nd non-periodic dimension} :dt
|
|
|
|
When specifying an off-diagonal pressure component, the 2nd of the two
|
|
dimensions must be periodic. E.g. if the xy component is specified,
|
|
then the y dimension must be periodic. :dd
|
|
|
|
{Cannot use fix box/relax on a non-periodic dimension} :dt
|
|
|
|
When specifying a diagonal pressure component, the dimension must be
|
|
periodic. :dd
|
|
|
|
{Cannot use fix box/relax with both relaxation and scaling on a tilt factor} :dt
|
|
|
|
When specifying scaling on a tilt factor component, that component can not
|
|
also be controlled by the barostat. E.g. if scalexy yes is specified and
|
|
also keyword tri or xy, this is wrong. :dd
|
|
|
|
{Cannot use fix box/relax with tilt factor scaling on a 2nd non-periodic dimension} :dt
|
|
|
|
When specifying scaling on a tilt factor component, the 2nd of the two
|
|
dimensions must be periodic. E.g. if the xy component is specified,
|
|
then the y dimension must be periodic. :dd
|
|
|
|
{Cannot use fix deform on a shrink-wrapped boundary} :dt
|
|
|
|
The x, y, z options cannot be applied to shrink-wrapped
|
|
dimensions. :dd
|
|
|
|
{Cannot use fix deform tilt on a shrink-wrapped 2nd dim} :dt
|
|
|
|
This is because the shrink-wrapping will change the value
|
|
of the strain implied by the tilt factor. :dd
|
|
|
|
{Cannot use fix deform trate on a box with zero tilt} :dt
|
|
|
|
The trate style alters the current strain. :dd
|
|
|
|
{Cannot use fix deposit rigid and not molecule} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix deposit rigid and shake} :dt
|
|
|
|
These two attributes are conflicting. :dd
|
|
|
|
{Cannot use fix deposit shake and not molecule} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix enforce2d with 3d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix gcmc in a 2d simulation} :dt
|
|
|
|
Fix gcmc is set up to run in 3d only. No 2d simulations with fix gcmc
|
|
are allowed. :dd
|
|
|
|
{Cannot use fix gcmc with a triclinic box} :dt
|
|
|
|
Fix gcmc is set up to run with othogonal boxes only. Simulations with
|
|
triclinic boxes and fix gcmc are not allowed. :dd
|
|
|
|
{Cannot use fix msst without per-type mass defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix npt and fix deform on same component of stress tensor} :dt
|
|
|
|
This would be changing the same box dimension twice. :dd
|
|
|
|
{Cannot use fix nvt/npt/nph on a 2nd non-periodic dimension} :dt
|
|
|
|
When specifying an off-diagonal pressure component, the 2nd of the two
|
|
dimensions must be periodic. E.g. if the xy component is specified,
|
|
then the y dimension must be periodic. :dd
|
|
|
|
{Cannot use fix nvt/npt/nph on a non-periodic dimension} :dt
|
|
|
|
When specifying a diagonal pressure component, the dimension must be
|
|
periodic. :dd
|
|
|
|
{Cannot use fix nvt/npt/nph with both xy dynamics and xy scaling} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix nvt/npt/nph with both xz dynamics and xz scaling} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix nvt/npt/nph with both yz dynamics and yz scaling} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix nvt/npt/nph with xy scaling when y is non-periodic dimension} :dt
|
|
|
|
The 2nd dimension in the barostatted tilt factor must be periodic. :dd
|
|
|
|
{Cannot use fix nvt/npt/nph with xz scaling when z is non-periodic dimension} :dt
|
|
|
|
The 2nd dimension in the barostatted tilt factor must be periodic. :dd
|
|
|
|
{Cannot use fix nvt/npt/nph with yz scaling when z is non-periodic dimension} :dt
|
|
|
|
The 2nd dimension in the barostatted tilt factor must be periodic. :dd
|
|
|
|
{Cannot use fix pour rigid and not molecule} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix pour rigid and shake} :dt
|
|
|
|
These two attributes are conflicting. :dd
|
|
|
|
{Cannot use fix pour shake and not molecule} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix pour with triclinic box} :dt
|
|
|
|
This option is not yet supported. :dd
|
|
|
|
{Cannot use fix press/berendsen and fix deform on same component of stress tensor} :dt
|
|
|
|
These commands both change the box size/shape, so you cannot use both
|
|
together. :dd
|
|
|
|
{Cannot use fix press/berendsen on a non-periodic dimension} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix press/berendsen with triclinic box} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix reax/bonds without pair_style reax} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Cannot use fix rigid npt/nph and fix deform on same component of stress tensor} :dt
|
|
|
|
This would be changing the same box dimension twice. :dd
|
|
|
|
{Cannot use fix rigid npt/nph on a non-periodic dimension} :dt
|
|
|
|
When specifying a diagonal pressure component, the dimension must be
|
|
periodic. :dd
|
|
|
|
{Cannot use fix shake with non-molecular system} :dt
|
|
|
|
Your choice of atom style does not have bonds. :dd
|
|
|
|
{Cannot use fix ttm with 2d simulation} :dt
|
|
|
|
This is a current restriction of this fix due to the grid it creates. :dd
|
|
|
|
{Cannot use fix ttm with triclinic box} :dt
|
|
|
|
This is a current restriction of this fix due to the grid it creates. :dd
|
|
|
|
{Cannot use fix tune/kspace without a kspace style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix tune/kspace without a pair style} :dt
|
|
|
|
This fix (tune/kspace) can only be used when a pair style has been specified. :dd
|
|
|
|
{Cannot use fix wall in periodic dimension} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix wall zlo/zhi for a 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix wall/reflect in periodic dimension} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix wall/reflect zlo/zhi for a 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix wall/srd in periodic dimension} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix wall/srd more than once} :dt
|
|
|
|
Nor is their a need to since multiple walls can be specified
|
|
in one command. :dd
|
|
|
|
{Cannot use fix wall/srd without fix srd} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix wall/srd zlo/zhi for a 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix_deposit unless atoms have IDs} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use fix_pour unless atoms have IDs} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use force/hybrid_neigh with triclinic box} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use force/neigh with triclinic box} :dt
|
|
|
|
This is a current limitation of the GPU implementation
|
|
in LAMMPS. :dd
|
|
|
|
{Cannot use include command within an if command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use kspace solver on system with no charge} :dt
|
|
|
|
No atoms in system have a non-zero charge. :dd
|
|
|
|
{Cannot use kspace solver with selected options on system with no charge} :dt
|
|
|
|
No atoms in system have a non-zero charge. Change charges or change
|
|
options of the kspace solver/pair style. :dd
|
|
|
|
{Cannot use lines with fix srd unless overlap is set} :dt
|
|
|
|
This is because line segements are connected to each other. :dd
|
|
|
|
{Cannot use multiple fix wall commands with pair brownian} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use multiple fix wall commands with pair lubricate} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use multiple fix wall commands with pair lubricate/poly} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use multiple fix wall commands with pair lubricateU} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use neigh_modify exclude with GPU neighbor builds} :dt
|
|
|
|
This is a current limitation of the GPU implementation
|
|
in LAMMPS. :dd
|
|
|
|
{Cannot use neighbor bins - box size << cutoff} :dt
|
|
|
|
Too many neighbor bins will be created. This typically happens when
|
|
the simulation box is very small in some dimension, compared to the
|
|
neighbor cutoff. Use the "nsq" style instead of "bin" style. :dd
|
|
|
|
{Cannot use newton pair with beck/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with born/coul/long/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with born/coul/wolf/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with born/gpu pair style} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Cannot use newton pair with buck/coul/cut/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with buck/coul/long/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with buck/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with colloid/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with coul/dsf/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with coul/long/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with dipole/cut/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with eam/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with gauss/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with gayberne/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj/charmm/coul/long/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj/class2/coul/long/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj/class2/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj/cut/coul/cut/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj/cut/coul/debye/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj/cut/coul/dsf/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj/cut/coul/long/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj/cut/coul/msm/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj/cut/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj/expand/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj/gromacs/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with lj96/cut/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with mie/cut/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with morse/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with resquared/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with soft/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with table/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with yukawa/colloid/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use newton pair with yukawa/gpu pair style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use non-zero forces in an energy minimization} :dt
|
|
|
|
Fix setforce cannot be used in this manner. Use fix addforce
|
|
instead. :dd
|
|
|
|
{Cannot use nonperiodic boundares with fix ttm} :dt
|
|
|
|
This fix requires a fully periodic simulation box. :dd
|
|
|
|
{Cannot use nonperiodic boundaries with Ewald} :dt
|
|
|
|
For kspace style ewald, all 3 dimensions must have periodic boundaries
|
|
unless you use the kspace_modify command to define a 2d slab with a
|
|
non-periodic z dimension. :dd
|
|
|
|
{Cannot use nonperiodic boundaries with EwaldDisp} :dt
|
|
|
|
For kspace style ewald/disp, all 3 dimensions must have periodic
|
|
boundaries unless you use the kspace_modify command to define a 2d
|
|
slab with a non-periodic z dimension. :dd
|
|
|
|
{Cannot use nonperiodic boundaries with PPPM} :dt
|
|
|
|
For kspace style pppm, all 3 dimensions must have periodic boundaries
|
|
unless you use the kspace_modify command to define a 2d slab with a
|
|
non-periodic z dimension. :dd
|
|
|
|
{Cannot use nonperiodic boundaries with PPPMDisp} :dt
|
|
|
|
For kspace style pppm/disp, all 3 dimensions must have periodic
|
|
boundaries unless you use the kspace_modify command to define a 2d
|
|
slab with a non-periodic z dimension. :dd
|
|
|
|
{Cannot use order greater than 8 with pppm/gpu.} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use pair hybrid with GPU neighbor list builds} :dt
|
|
|
|
Neighbor list builds must be done on the CPU for this pair style. :dd
|
|
|
|
{Cannot use pair tail corrections with 2d simulations} :dt
|
|
|
|
The correction factors are only currently defined for 3d systems. :dd
|
|
|
|
{Cannot use processors part command without using partitions} :dt
|
|
|
|
See the command-line -partition switch. :dd
|
|
|
|
{Cannot use ramp in variable formula between runs} :dt
|
|
|
|
This is because the ramp() function is time dependent. :dd
|
|
|
|
{Cannot use region INF or EDGE when box does not exist} :dt
|
|
|
|
Regions that extend to the box boundaries can only be used after the
|
|
create_box command has been used. :dd
|
|
|
|
{Cannot use set atom with no atom IDs defined} :dt
|
|
|
|
Atom IDs are not defined, so they cannot be used to identify an atom. :dd
|
|
|
|
{Cannot use set mol with no molecule IDs defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use swiggle in variable formula between runs} :dt
|
|
|
|
This is a function of elapsed time. :dd
|
|
|
|
{Cannot use tris with fix srd unless overlap is set} :dt
|
|
|
|
This is because triangles are connected to each other. :dd
|
|
|
|
{Cannot use variable energy with constant efield in fix efield} :dt
|
|
|
|
LAMMPS computes the energy itself when the E-field is constant. :dd
|
|
|
|
{Cannot use variable energy with constant force in fix addforce} :dt
|
|
|
|
This is because for constant force, LAMMPS can compute the change
|
|
in energy directly. :dd
|
|
|
|
{Cannot use variable every setting for dump dcd} :dt
|
|
|
|
The format of DCD dump files requires snapshots be output
|
|
at a constant frequency. :dd
|
|
|
|
{Cannot use variable every setting for dump xtc} :dt
|
|
|
|
The format of this file requires snapshots at regular intervals. :dd
|
|
|
|
{Cannot use vdisplace in variable formula between runs} :dt
|
|
|
|
This is a function of elapsed time. :dd
|
|
|
|
{Cannot use velocity create loop all unless atoms have IDs} :dt
|
|
|
|
Atoms in the simulation to do not have IDs, so this style
|
|
of velocity creation cannot be performed. :dd
|
|
|
|
{Cannot use wall in periodic dimension} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use write_restart fileper without % in restart file name} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot use write_restart nfile without % in restart file name} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot wiggle and shear fix wall/gran} :dt
|
|
|
|
Cannot specify both options at the same time. :dd
|
|
|
|
{Cannot write to restart file - MPI error: %s} :dt
|
|
|
|
This error was generated by MPI when reading/writing an MPI-IO restart
|
|
file. :dd
|
|
|
|
{Cannot zero Langevin force of 0 atoms} :dt
|
|
|
|
The group has zero atoms, so you cannot request its force
|
|
be zeroed. :dd
|
|
|
|
{Cannot zero gld force for zero atoms} :dt
|
|
|
|
There are no atoms currently in the group. :dd
|
|
|
|
{Cannot zero momentum of no atoms} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Change_box command before simulation box is defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Change_box volume used incorrectly} :dt
|
|
|
|
The "dim volume" option must be used immediately following one or two
|
|
settings for "dim1 ..." (and optionally "dim2 ...") and must be for a
|
|
different dimension, i.e. dim != dim1 and dim != dim2. :dd
|
|
|
|
{Communicate group != atom_modify first group} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ID for compute atom/molecule does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ID for compute reduce does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ID for compute slice does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ID for fix ave/atom does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ID for fix ave/correlate does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ID for fix ave/histo does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ID for fix ave/spatial does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ID for fix ave/time does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ID for fix store/state does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ID must be alphanumeric or underscore characters} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute angle/local used when angles are not allowed} :dt
|
|
|
|
The atom style does not support angles. :dd
|
|
|
|
{Compute atom/molecule compute array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute atom/molecule compute does not calculate a per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute atom/molecule compute does not calculate a per-atom vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute atom/molecule compute does not calculate per-atom values} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute atom/molecule fix array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute atom/molecule fix does not calculate a per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute atom/molecule fix does not calculate a per-atom vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute atom/molecule fix does not calculate per-atom values} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute atom/molecule requires molecular atom style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute atom/molecule variable is not atom-style variable} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute body/local requires atom style body} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute bond/local used when bonds are not allowed} :dt
|
|
|
|
The atom style does not support bonds. :dd
|
|
|
|
{Compute centro/atom requires a pair style be defined} :dt
|
|
|
|
This is because the computation of the centro-symmetry values
|
|
uses a pairwise neighbor list. :dd
|
|
|
|
{Compute cluster/atom cutoff is longer than pairwise cutoff} :dt
|
|
|
|
Cannot identify clusters beyond cutoff. :dd
|
|
|
|
{Compute cluster/atom requires a pair style be defined} :dt
|
|
|
|
This is so that the pair style defines a cutoff distance which
|
|
is used to find clusters. :dd
|
|
|
|
{Compute cna/atom cutoff is longer than pairwise cutoff} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Compute cna/atom requires a pair style be defined} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Compute com/molecule requires molecular atom style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute contact/atom requires a pair style be defined} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Compute contact/atom requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute coord/atom cutoff is longer than pairwise cutoff} :dt
|
|
|
|
Cannot compute coordination at distances longer than the pair cutoff,
|
|
since those atoms are not in the neighbor list. :dd
|
|
|
|
{Compute coord/atom requires a pair style be defined} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Compute damage/atom requires peridynamic potential} :dt
|
|
|
|
Damage is a Peridynamic-specific metric. It requires you
|
|
to be running a Peridynamics simulation. :dd
|
|
|
|
{Compute dihedral/local used when dihedrals are not allowed} :dt
|
|
|
|
The atom style does not support dihedrals. :dd
|
|
|
|
{Compute does not allow an extra compute or fix to be reset} :dt
|
|
|
|
This is an internal LAMMPS error. Please report it to the
|
|
developers. :dd
|
|
|
|
{Compute erotate/asphere requires atom style ellipsoid or line or tri} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute erotate/asphere requires extended particles} :dt
|
|
|
|
This compute cannot be used with point paritlces. :dd
|
|
|
|
{Compute erotate/rigid with non-rigid fix-ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute erotate/sphere requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute erotate/sphere/atom requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute event/displace has invalid fix event assigned} :dt
|
|
|
|
This is an internal LAMMPS error. Please report it to the
|
|
developers. :dd
|
|
|
|
{Compute group/group group ID does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute gyration/molecule requires molecular atom style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute heat/flux compute ID does not compute ke/atom} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute heat/flux compute ID does not compute pe/atom} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute heat/flux compute ID does not compute stress/atom} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute improper/local used when impropers are not allowed} :dt
|
|
|
|
The atom style does not support impropers. :dd
|
|
|
|
{Compute inertia/molecule requires molecular atom style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ke/rigid with non-rigid fix-ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute msd/molecule requires molecular atom style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute nve/asphere requires atom style ellipsoid} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute nvt/nph/npt asphere requires atom style ellipsoid} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute pair must use group all} :dt
|
|
|
|
Pair styles accumlate energy on all atoms. :dd
|
|
|
|
{Compute pe must use group all} :dt
|
|
|
|
Energies computed by potentials (pair, bond, etc) are computed on all
|
|
atoms. :dd
|
|
|
|
{Compute pressure must use group all} :dt
|
|
|
|
Virial contributions computed by potentials (pair, bond, etc) are
|
|
computed on all atoms. :dd
|
|
|
|
{Compute pressure temperature ID does not compute temperature} :dt
|
|
|
|
The compute ID assigned to a pressure computation must compute
|
|
temperature. :dd
|
|
|
|
{Compute property/atom floating point vector does not exist} :dt
|
|
|
|
The command is accessing a vector added by the fix property/atom
|
|
command, that does not exist. :dd
|
|
|
|
{Compute property/atom for atom property that isn't allocated} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute property/atom integer vector does not exist} :dt
|
|
|
|
The command is accessing a vector added by the fix property/atom
|
|
command, that does not exist. :dd
|
|
|
|
{Compute property/local cannot use these inputs together} :dt
|
|
|
|
Only inputs that generate the same number of datums can be used
|
|
togther. E.g. bond and angle quantities cannot be mixed. :dd
|
|
|
|
{Compute property/local does not (yet) work with atom_style template} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute property/local for property that isn't allocated} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute property/molecule requires molecular atom style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute rdf requires a pair style be defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute reduce compute array is accessed out-of-range} :dt
|
|
|
|
An index for the array is out of bounds. :dd
|
|
|
|
{Compute reduce compute calculates global values} :dt
|
|
|
|
A compute that calculates peratom or local values is required. :dd
|
|
|
|
{Compute reduce compute does not calculate a local array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute reduce compute does not calculate a local vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute reduce compute does not calculate a per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute reduce compute does not calculate a per-atom vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute reduce fix array is accessed out-of-range} :dt
|
|
|
|
An index for the array is out of bounds. :dd
|
|
|
|
{Compute reduce fix calculates global values} :dt
|
|
|
|
A fix that calculates peratom or local values is required. :dd
|
|
|
|
{Compute reduce fix does not calculate a local array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute reduce fix does not calculate a local vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute reduce fix does not calculate a per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute reduce fix does not calculate a per-atom vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute reduce replace requires min or max mode} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute reduce variable is not atom-style variable} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute slice compute array is accessed out-of-range} :dt
|
|
|
|
An index for the array is out of bounds. :dd
|
|
|
|
{Compute slice compute does not calculate a global array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute slice compute does not calculate a global vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute slice compute does not calculate global vector or array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute slice compute vector is accessed out-of-range} :dt
|
|
|
|
The index for the vector is out of bounds. :dd
|
|
|
|
{Compute slice fix array is accessed out-of-range} :dt
|
|
|
|
An index for the array is out of bounds. :dd
|
|
|
|
{Compute slice fix does not calculate a global array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute slice fix does not calculate a global vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute slice fix does not calculate global vector or array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute slice fix vector is accessed out-of-range} :dt
|
|
|
|
The index for the vector is out of bounds. :dd
|
|
|
|
{Compute temp/asphere requires atom style ellipsoid} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute temp/asphere requires extended particles} :dt
|
|
|
|
This compute cannot be used with point paritlces. :dd
|
|
|
|
{Compute temp/partial cannot use vz for 2d systemx} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute temp/profile cannot bin z for 2d systems} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute temp/profile cannot use vz for 2d systemx} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute temp/sphere requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ti kspace style does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ti pair style does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute ti tail when pair style does not compute tail corrections} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute used in variable between runs is not current} :dt
|
|
|
|
Computes cannot be invoked by a variable in between runs. Thus they
|
|
must have been evaluated on the last timestep of the previous run in
|
|
order for their value(s) to be accessed. See the doc page for the
|
|
variable command for more info. :dd
|
|
|
|
{Compute used in variable thermo keyword between runs is not current} :dt
|
|
|
|
Some thermo keywords rely on a compute to calculate their value(s).
|
|
Computes cannot be invoked by a variable in between runs. Thus they
|
|
must have been evaluated on the last timestep of the previous run in
|
|
order for their value(s) to be accessed. See the doc page for the
|
|
variable command for more info. :dd
|
|
|
|
{Computed temperature for fix temp/berendsen cannot be 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Computed temperature for fix temp/rescale cannot be 0.0} :dt
|
|
|
|
Cannot rescale the temperature to a new value if the current
|
|
temperature is 0.0. :dd
|
|
|
|
{Could not adjust g_ewald_6} :dt
|
|
|
|
The Newton-Raphson solver failed to converge to a good value for
|
|
g_ewald. This error should not occur for typical problems. Please
|
|
send an email to the developers. :dd
|
|
|
|
{Could not compute g_ewald} :dt
|
|
|
|
The Newton-Raphson solver failed to converge to a good value for
|
|
g_ewald. This error should not occur for typical problems. Please
|
|
send an email to the developers. :dd
|
|
|
|
{Could not compute grid size} :dt
|
|
|
|
The code is unable to compute a grid size consistent with the desired
|
|
accuracy. This error should not occur for typical problems. Please
|
|
send an email to the developers. :dd
|
|
|
|
{Could not compute grid size for Coulomb interaction} :dt
|
|
|
|
The code is unable to compute a grid size consistent with the desired
|
|
accuracy. This error should not occur for typical problems. Please
|
|
send an email to the developers. :dd
|
|
|
|
{Could not compute grid size for Dispersion} :dt
|
|
|
|
The code is unable to compute a grid size consistent with the desired
|
|
accuracy. This error should not occur for typical problems. Please
|
|
send an email to the developers. :dd
|
|
|
|
{Could not count initial bonds in fix bond/create} :dt
|
|
|
|
Could not find one of the atoms in a bond on this processor. :dd
|
|
|
|
{Could not create 3d FFT plan} :dt
|
|
|
|
The FFT setup for the PPPM solver failed, typically due
|
|
to lack of memory. This is an unusual error. Check the
|
|
size of the FFT grid you are requesting. :dd
|
|
|
|
{Could not create 3d grid of processors} :dt
|
|
|
|
The specified constraints did not allow a Px by Py by Pz grid to be
|
|
created where Px * Py * Pz = P = total number of processors. :dd
|
|
|
|
{Could not create 3d remap plan} :dt
|
|
|
|
The FFT setup in pppm failed. :dd
|
|
|
|
{Could not create numa grid of processors} :dt
|
|
|
|
The specified constraints did not allow this style of grid to be
|
|
created. Usually this is because the total processor count is not a
|
|
multiple of the cores/node or the user specified processor count is >
|
|
1 in one of the dimensions. :dd
|
|
|
|
{Could not create twolevel 3d grid of processors} :dt
|
|
|
|
The specified constraints did not allow this style of grid to be
|
|
created. :dd
|
|
|
|
{Could not find atom_modify first group ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find change_box group ID} :dt
|
|
|
|
Group ID used in the change_box command does not exist. :dd
|
|
|
|
{Could not find compute ID for PRD} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find compute ID for TAD} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find compute ID for temperature bias} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find compute ID to delete} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find compute displace/atom fix ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find compute event/displace fix ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find compute group ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find compute heat/flux compute ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find compute msd fix ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find compute pressure temperature ID} :dt
|
|
|
|
The compute ID for calculating temperature does not exist. :dd
|
|
|
|
{Could not find compute vacf fix ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find compute/voronoi surface group ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find compute_modify ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find delete_atoms group ID} :dt
|
|
|
|
Group ID used in the delete_atoms command does not exist. :dd
|
|
|
|
{Could not find delete_atoms region ID} :dt
|
|
|
|
Region ID used in the delete_atoms command does not exist. :dd
|
|
|
|
{Could not find displace_atoms group ID} :dt
|
|
|
|
Group ID used in the displace_atoms command does not exist. :dd
|
|
|
|
{Could not find dump custom compute ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find dump custom fix ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find dump custom variable name} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find dump group ID} :dt
|
|
|
|
A group ID used in the dump command does not exist. :dd
|
|
|
|
{Could not find dump local compute ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find dump local fix ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find dump modify compute ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find dump modify fix ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find dump modify variable name} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find fix ID to delete} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find fix gcmc rotation group ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find fix group ID} :dt
|
|
|
|
A group ID used in the fix command does not exist. :dd
|
|
|
|
{Could not find fix msst compute ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find fix poems group ID} :dt
|
|
|
|
A group ID used in the fix poems command does not exist. :dd
|
|
|
|
{Could not find fix recenter group ID} :dt
|
|
|
|
A group ID used in the fix recenter command does not exist. :dd
|
|
|
|
{Could not find fix rigid group ID} :dt
|
|
|
|
A group ID used in the fix rigid command does not exist. :dd
|
|
|
|
{Could not find fix srd group ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find fix_modify ID} :dt
|
|
|
|
A fix ID used in the fix_modify command does not exist. :dd
|
|
|
|
{Could not find fix_modify pressure ID} :dt
|
|
|
|
The compute ID for computing pressure does not exist. :dd
|
|
|
|
{Could not find fix_modify temperature ID} :dt
|
|
|
|
The compute ID for computing temperature does not exist. :dd
|
|
|
|
{Could not find group delete group ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find set group ID} :dt
|
|
|
|
Group ID specified in set command does not exist. :dd
|
|
|
|
{Could not find thermo compute ID} :dt
|
|
|
|
Compute ID specified in thermo_style command does not exist. :dd
|
|
|
|
{Could not find thermo custom compute ID} :dt
|
|
|
|
The compute ID needed by thermo style custom to compute a requested
|
|
quantity does not exist. :dd
|
|
|
|
{Could not find thermo custom fix ID} :dt
|
|
|
|
The fix ID needed by thermo style custom to compute a requested
|
|
quantity does not exist. :dd
|
|
|
|
{Could not find thermo custom variable name} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find thermo fix ID} :dt
|
|
|
|
Fix ID specified in thermo_style command does not exist. :dd
|
|
|
|
{Could not find thermo variable name} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not find thermo_modify pressure ID} :dt
|
|
|
|
The compute ID needed by thermo style custom to compute pressure does
|
|
not exist. :dd
|
|
|
|
{Could not find thermo_modify temperature ID} :dt
|
|
|
|
The compute ID needed by thermo style custom to compute temperature does
|
|
not exist. :dd
|
|
|
|
{Could not find undump ID} :dt
|
|
|
|
A dump ID used in the undump command does not exist. :dd
|
|
|
|
{Could not find velocity group ID} :dt
|
|
|
|
A group ID used in the velocity command does not exist. :dd
|
|
|
|
{Could not find velocity temperature ID} :dt
|
|
|
|
The compute ID needed by the velocity command to compute temperature
|
|
does not exist. :dd
|
|
|
|
{Could not find/initialize a specified accelerator device} :dt
|
|
|
|
Could not initialize at least one of the devices specified for the gpu
|
|
package :dd
|
|
|
|
{Could not grab element entry from EIM potential file} :dt
|
|
|
|
Self-explanatory :dd
|
|
|
|
{Could not grab global entry from EIM potential file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Could not grab pair entry from EIM potential file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Coulomb PPPMDisp order has been reduced below minorder} :dt
|
|
|
|
The default minimum order is 2. This can be reset by the
|
|
kspace_modify minorder command. :dd
|
|
|
|
{Coulomb cut not supported in pair_style buck/long/coul/coul} :dt
|
|
|
|
Must use long-range Coulombic interactions. :dd
|
|
|
|
{Coulomb cut not supported in pair_style lj/long/coul/long} :dt
|
|
|
|
Must use long-range Coulombic interactions. :dd
|
|
|
|
{Coulomb cut not supported in pair_style lj/long/tip4p/long} :dt
|
|
|
|
Must use long-range Coulombic interactions. :dd
|
|
|
|
{Coulomb cutoffs of pair hybrid sub-styles do not match} :dt
|
|
|
|
If using a Kspace solver, all Coulomb cutoffs of long pair styles must
|
|
be the same. :dd
|
|
|
|
{Coulombic cut not supported in pair_style lj/long/dipole/long} :dt
|
|
|
|
Must use long-range Coulombic interactions. :dd
|
|
|
|
{Cound not find dump_modify ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Create_atoms command before simulation box is defined} :dt
|
|
|
|
The create_atoms command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Create_atoms molecule has atom IDs, but system does not} :dt
|
|
|
|
The atom_style id command can be used to force atom IDs to be stored. :dd
|
|
|
|
{Create_atoms molecule must have atom types} :dt
|
|
|
|
The defined molecule does not specify atom types. :dd
|
|
|
|
{Create_atoms molecule must have coordinates} :dt
|
|
|
|
The defined molecule does not specify coordinates. :dd
|
|
|
|
{Create_atoms region ID does not exist} :dt
|
|
|
|
A region ID used in the create_atoms command does not exist. :dd
|
|
|
|
{Create_box region ID does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Create_box region does not support a bounding box} :dt
|
|
|
|
Not all regions represent bounded volumes. You cannot use
|
|
such a region with the create_box command. :dd
|
|
|
|
{Cut-offs missing in pair_style lj/long/dipole/long} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cutoffs missing in pair_style buck/long/coul/long} :dt
|
|
|
|
Self-exlanatory. :dd
|
|
|
|
{Cutoffs missing in pair_style lj/long/coul/long} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cyclic loop in joint connections} :dt
|
|
|
|
Fix poems cannot (yet) work with coupled bodies whose joints connect
|
|
the bodies in a ring (or cycle). :dd
|
|
|
|
{Degenerate lattice primitive vectors} :dt
|
|
|
|
Invalid set of 3 lattice vectors for lattice command. :dd
|
|
|
|
{Delete region ID does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Delete_atoms command before simulation box is defined} :dt
|
|
|
|
The delete_atoms command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Delete_atoms cutoff > neighbor cutoff} :dt
|
|
|
|
Cannot delete atoms further away than a processor knows about. :dd
|
|
|
|
{Delete_atoms requires a pair style be defined} :dt
|
|
|
|
This is because atom deletion within a cutoff uses a pairwise
|
|
neighbor list. :dd
|
|
|
|
{Delete_bonds command before simulation box is defined} :dt
|
|
|
|
The delete_bonds command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Delete_bonds command with no atoms existing} :dt
|
|
|
|
No atoms are yet defined so the delete_bonds command cannot be used. :dd
|
|
|
|
{Deposition region extends outside simulation box} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Did not assign all atoms correctly} :dt
|
|
|
|
Atoms read in from a data file were not assigned correctly to
|
|
processors. This is likely due to some atom coordinates being
|
|
outside a non-periodic simulation box. :dd
|
|
|
|
{Did not find all elements in MEAM library file} :dt
|
|
|
|
The requested elements were not found in the MEAM file. :dd
|
|
|
|
{Did not find fix shake partner info} :dt
|
|
|
|
Could not find bond partners implied by fix shake command. This error
|
|
can be triggered if the delete_bonds command was used before fix
|
|
shake, and it removed bonds without resetting the 1-2, 1-3, 1-4
|
|
weighting list via the special keyword. :dd
|
|
|
|
{Did not find keyword in table file} :dt
|
|
|
|
Keyword used in pair_coeff command was not found in table file. :dd
|
|
|
|
{Did not set pressure for fix rigid/nph} :dt
|
|
|
|
The press keyword must be specified. :dd
|
|
|
|
{Did not set temperature for fix rigid/nvt} :dt
|
|
|
|
The temp keyword must be specified. :dd
|
|
|
|
{Did not set temperature or pressure for fix rigid/npt} :dt
|
|
|
|
The temp and press keywords must be specified. :dd
|
|
|
|
{Dihedral atom missing in delete_bonds} :dt
|
|
|
|
The delete_bonds command cannot find one or more atoms in a particular
|
|
dihedral on a particular processor. The pairwise cutoff is too short
|
|
or the atoms are too far apart to make a valid dihedral. :dd
|
|
|
|
{Dihedral atom missing in set command} :dt
|
|
|
|
The set command cannot find one or more atoms in a particular dihedral
|
|
on a particular processor. The pairwise cutoff is too short or the
|
|
atoms are too far apart to make a valid dihedral. :dd
|
|
|
|
{Dihedral atoms %d %d %d %d missing on proc %d at step %ld} :dt
|
|
|
|
One or more of 4 atoms needed to compute a particular dihedral are
|
|
missing on this processor. Typically this is because the pairwise
|
|
cutoff is set too short or the dihedral has blown apart and an atom is
|
|
too far away. :dd
|
|
|
|
{Dihedral charmm is incompatible with Pair style} :dt
|
|
|
|
Dihedral style charmm must be used with a pair style charmm
|
|
in order for the 1-4 epsilon/sigma parameters to be defined. :dd
|
|
|
|
{Dihedral coeff for hybrid has invalid style} :dt
|
|
|
|
Dihedral style hybrid uses another dihedral style as one of its
|
|
coefficients. The dihedral style used in the dihedral_coeff command
|
|
or read from a restart file is not recognized. :dd
|
|
|
|
{Dihedral coeffs are not set} :dt
|
|
|
|
No dihedral coefficients have been assigned in the data file or via
|
|
the dihedral_coeff command. :dd
|
|
|
|
{Dihedral style hybrid cannot have hybrid as an argument} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dihedral style hybrid cannot have none as an argument} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dihedral style hybrid cannot use same dihedral style twice} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dihedral/improper extent > half of periodic box length} :dt
|
|
|
|
This error was detected by the neigh_modify check yes setting. It is
|
|
an error because the dihedral atoms are so far apart it is ambiguous
|
|
how it should be defined. :dd
|
|
|
|
{Dihedral_coeff command before dihedral_style is defined} :dt
|
|
|
|
Coefficients cannot be set in the data file or via the dihedral_coeff
|
|
command until an dihedral_style has been assigned. :dd
|
|
|
|
{Dihedral_coeff command before simulation box is defined} :dt
|
|
|
|
The dihedral_coeff command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Dihedral_coeff command when no dihedrals allowed} :dt
|
|
|
|
The chosen atom style does not allow for dihedrals to be defined. :dd
|
|
|
|
{Dihedral_style command when no dihedrals allowed} :dt
|
|
|
|
The chosen atom style does not allow for dihedrals to be defined. :dd
|
|
|
|
{Dihedrals assigned incorrectly} :dt
|
|
|
|
Dihedrals read in from the data file were not assigned correctly to
|
|
atoms. This means there is something invalid about the topology
|
|
definitions. :dd
|
|
|
|
{Dihedrals defined but no dihedral types} :dt
|
|
|
|
The data file header lists dihedrals but no dihedral types. :dd
|
|
|
|
{Dimension command after simulation box is defined} :dt
|
|
|
|
The dimension command cannot be used after a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Dispersion PPPMDisp order has been reduced below minorder} :dt
|
|
|
|
The default minimum order is 2. This can be reset by the
|
|
kspace_modify minorder command. :dd
|
|
|
|
{Displace_atoms command before simulation box is defined} :dt
|
|
|
|
The displace_atoms command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Distance must be > 0 for compute event/displace} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Divide by 0 in influence function of pair peri/lps} :dt
|
|
|
|
This should not normally occur. It is likely a problem with your
|
|
model. :dd
|
|
|
|
{Divide by 0 in variable formula} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Domain too large for neighbor bins} :dt
|
|
|
|
The domain has become extremely large so that neighbor bins cannot be
|
|
used. Most likely, one or more atoms have been blown out of the
|
|
simulation box to a great distance. :dd
|
|
|
|
{Double precision is not supported on this accelerator} :dt
|
|
|
|
Self-explanatory :dd
|
|
|
|
{Dump cfg arguments can not mix xs|ys|zs with xsu|ysu|zsu} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump cfg arguments must start with 'mass type xs ys zs' or 'mass type xsu ysu zsu'} :dt
|
|
|
|
This is a requirement of the CFG output format. See the dump cfg doc
|
|
page for more details. :dd
|
|
|
|
{Dump cfg requires one snapshot per file} :dt
|
|
|
|
Use the wildcard "*" character in the filename. :dd
|
|
|
|
{Dump custom and fix not computed at compatible times} :dt
|
|
|
|
The fix must produce per-atom quantities on timesteps that dump custom
|
|
needs them. :dd
|
|
|
|
{Dump custom compute does not calculate per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump custom compute does not calculate per-atom vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump custom compute does not compute per-atom info} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump custom compute vector is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump custom fix does not compute per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump custom fix does not compute per-atom info} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump custom fix does not compute per-atom vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump custom fix vector is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump custom variable is not atom-style variable} :dt
|
|
|
|
Only atom-style variables generate per-atom quantities, needed for
|
|
dump output. :dd
|
|
|
|
{Dump dcd of non-matching # of atoms} :dt
|
|
|
|
Every snapshot written by dump dcd must contain the same # of atoms. :dd
|
|
|
|
{Dump dcd requires sorting by atom ID} :dt
|
|
|
|
Use the dump_modify sort command to enable this. :dd
|
|
|
|
{Dump every variable returned a bad timestep} :dt
|
|
|
|
The variable must return a timestep greater than the current timestep. :dd
|
|
|
|
{Dump file MPI-IO output not allowed with % in filename} :dt
|
|
|
|
This is because a % signifies one file per processor and MPI-IO
|
|
creates one large file for all processors. :dd
|
|
|
|
{Dump file does not contain requested snapshot} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump file is incorrectly formatted} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump image bond not allowed with no bond types} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump image cannot perform sorting} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump image persp option is not yet supported} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump image requires one snapshot per file} :dt
|
|
|
|
Use a "*" in the filename. :dd
|
|
|
|
{Dump local and fix not computed at compatible times} :dt
|
|
|
|
The fix must produce per-atom quantities on timesteps that dump local
|
|
needs them. :dd
|
|
|
|
{Dump local attributes contain no compute or fix} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump local cannot sort by atom ID} :dt
|
|
|
|
This is because dump local does not really dump per-atom info. :dd
|
|
|
|
{Dump local compute does not calculate local array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump local compute does not calculate local vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump local compute does not compute local info} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump local compute vector is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump local count is not consistent across input fields} :dt
|
|
|
|
Every column of output must be the same length. :dd
|
|
|
|
{Dump local fix does not compute local array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump local fix does not compute local info} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump local fix does not compute local vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump local fix vector is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump modify bcolor not allowed with no bond types} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump modify bdiam not allowed with no bond types} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump modify compute ID does not compute per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump modify compute ID does not compute per-atom info} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump modify compute ID does not compute per-atom vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump modify compute ID vector is not large enough} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump modify element names do not match atom types} :dt
|
|
|
|
Number of element names must equal number of atom types. :dd
|
|
|
|
{Dump modify fix ID does not compute per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump modify fix ID does not compute per-atom info} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump modify fix ID does not compute per-atom vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump modify fix ID vector is not large enough} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump modify variable is not atom-style variable} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump sort column is invalid} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump xtc requires sorting by atom ID} :dt
|
|
|
|
Use the dump_modify sort command to enable this. :dd
|
|
|
|
{Dump_modify buffer yes not allowed for this style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dump_modify format string is too short} :dt
|
|
|
|
There are more fields to be dumped in a line of output than your
|
|
format string specifies. :dd
|
|
|
|
{Dump_modify region ID does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Dumping an atom property that isn't allocated} :dt
|
|
|
|
The chosen atom style does not define the per-atom quantity being
|
|
dumped. :dd
|
|
|
|
{Dumping an atom quantity that isn't allocated} :dt
|
|
|
|
Only per-atom quantities that are defined for the atom style being
|
|
used are allowed. :dd
|
|
|
|
{Duplicate fields in read_dump command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Duplicate particle in PeriDynamic bond - simulation box is too small} :dt
|
|
|
|
This is likely because your box length is shorter than 2 times
|
|
the bond length. :dd
|
|
|
|
{Electronic temperature dropped below zero} :dt
|
|
|
|
Something has gone wrong with the fix ttm electron temperature model. :dd
|
|
|
|
{Empty brackets in variable} :dt
|
|
|
|
There is no variable syntax that uses empty brackets. Check
|
|
the variable doc page. :dd
|
|
|
|
{Energy was not tallied on needed timestep} :dt
|
|
|
|
You are using a thermo keyword that requires potentials to
|
|
have tallied energy, but they didn't on this timestep. See the
|
|
variable doc page for ideas on how to make this work. :dd
|
|
|
|
{Epsilon or sigma reference not set by pair style in PPPMDisp} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Epsilon or sigma reference not set by pair style in ewald/n} :dt
|
|
|
|
The pair style is not providing the needed epsilon or sigma values. :dd
|
|
|
|
{Error in vdw spline: inner radius > outer radius} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Expected floating point parameter in variable definition} :dt
|
|
|
|
The quantity being read is a non-numeric value. :dd
|
|
|
|
{Expected integer parameter in variable definition} :dt
|
|
|
|
The quantity being read is a floating point or non-numeric value. :dd
|
|
|
|
{Failed to allocate %ld bytes for array %s} :dt
|
|
|
|
Your LAMMPS simulation has run out of memory. You need to run a
|
|
smaller simulation or on more processors. :dd
|
|
|
|
{Failed to open FFmpeg pipeline to file %s} :dt
|
|
|
|
The specified file cannot be opened. Check that the path and name are
|
|
correct and writable and that the FFmpeg executable can be found and run. :dd
|
|
|
|
{Failed to reallocate %ld bytes for array %s} :dt
|
|
|
|
Your LAMMPS simulation has run out of memory. You need to run a
|
|
smaller simulation or on more processors. :dd
|
|
|
|
{Fewer SRD bins than processors in some dimension} :dt
|
|
|
|
This is not allowed. Make your SRD bin size smaller. :dd
|
|
|
|
{File variable could not read value} :dt
|
|
|
|
Check the file assigned to the variable. :dd
|
|
|
|
{Final box dimension due to fix deform is < 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for compute atom/molecule does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for compute erotate/rigid does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for compute ke/rigid does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for compute reduce does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for compute slice does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for fix ave/atom does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for fix ave/correlate does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for fix ave/histo does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for fix ave/spatial does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for fix ave/time does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for fix store/state does not exist} :dt
|
|
|
|
Self-explanatory :dd
|
|
|
|
{Fix ID for read_data does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID for velocity does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ID must be alphanumeric or underscore characters} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix SRD no-slip requires atom attribute torque} :dt
|
|
|
|
This is because the SRD collisions will impart torque to the solute
|
|
particles. :dd
|
|
|
|
{Fix SRD: bad bin assignment for SRD advection} :dt
|
|
|
|
Something has gone wrong in your SRD model; try using more
|
|
conservative settings. :dd
|
|
|
|
{Fix SRD: bad search bin assignment} :dt
|
|
|
|
Something has gone wrong in your SRD model; try using more
|
|
conservative settings. :dd
|
|
|
|
{Fix SRD: bad stencil bin for big particle} :dt
|
|
|
|
Something has gone wrong in your SRD model; try using more
|
|
conservative settings. :dd
|
|
|
|
{Fix SRD: too many big particles in bin} :dt
|
|
|
|
Reset the ATOMPERBIN parameter at the top of fix_srd.cpp
|
|
to a larger value, and re-compile the code. :dd
|
|
|
|
{Fix SRD: too many walls in bin} :dt
|
|
|
|
This should not happen unless your system has been setup incorrectly. :dd
|
|
|
|
{Fix adapt kspace style does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix adapt pair style does not exist} :dt
|
|
|
|
Self-explanatory :dd
|
|
|
|
{Fix adapt pair style param not supported} :dt
|
|
|
|
The pair style does not know about the parameter you specified. :dd
|
|
|
|
{Fix adapt requires atom attribute charge} :dt
|
|
|
|
The atom style being used does not specify an atom charge. :dd
|
|
|
|
{Fix adapt requires atom attribute diameter} :dt
|
|
|
|
The atom style being used does not specify an atom diameter. :dd
|
|
|
|
{Fix adapt type pair range is not valid for pair hybrid sub-style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix append/atoms requires a lattice be defined} :dt
|
|
|
|
Use the lattice command for this purpose. :dd
|
|
|
|
{Fix ave/atom compute array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/atom compute does not calculate a per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/atom compute does not calculate a per-atom vector} :dt
|
|
|
|
A compute used by fix ave/atom must generate per-atom values. :dd
|
|
|
|
{Fix ave/atom compute does not calculate per-atom values} :dt
|
|
|
|
A compute used by fix ave/atom must generate per-atom values. :dd
|
|
|
|
{Fix ave/atom fix array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/atom fix does not calculate a per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/atom fix does not calculate a per-atom vector} :dt
|
|
|
|
A fix used by fix ave/atom must generate per-atom values. :dd
|
|
|
|
{Fix ave/atom fix does not calculate per-atom values} :dt
|
|
|
|
A fix used by fix ave/atom must generate per-atom values. :dd
|
|
|
|
{Fix ave/atom missed timestep} :dt
|
|
|
|
You cannot reset the timestep to a value beyond where the fix
|
|
expects to next perform averaging. :dd
|
|
|
|
{Fix ave/atom variable is not atom-style variable} :dt
|
|
|
|
A variable used by fix ave/atom must generate per-atom values. :dd
|
|
|
|
{Fix ave/correlate compute does not calculate a scalar} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/correlate compute does not calculate a vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/correlate compute vector is accessed out-of-range} :dt
|
|
|
|
The index for the vector is out of bounds. :dd
|
|
|
|
{Fix ave/correlate fix does not calculate a scalar} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/correlate fix does not calculate a vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/correlate fix vector is accessed out-of-range} :dt
|
|
|
|
The index for the vector is out of bounds. :dd
|
|
|
|
{Fix ave/correlate missed timestep} :dt
|
|
|
|
You cannot reset the timestep to a value beyond where the fix
|
|
expects to next perform averaging. :dd
|
|
|
|
{Fix ave/correlate variable is not equal-style variable} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo cannot input local values in scalar mode} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo cannot input per-atom values in scalar mode} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo compute array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo compute does not calculate a global array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo compute does not calculate a global scalar} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo compute does not calculate a global vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo compute does not calculate a local array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo compute does not calculate a local vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo compute does not calculate a per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo compute does not calculate a per-atom vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo compute does not calculate local values} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo compute does not calculate per-atom values} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo compute vector is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo fix array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo fix does not calculate a global array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo fix does not calculate a global scalar} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo fix does not calculate a global vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo fix does not calculate a local array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo fix does not calculate a local vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo fix does not calculate a per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo fix does not calculate a per-atom vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo fix does not calculate local values} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo fix does not calculate per-atom values} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo fix vector is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo input is invalid compute} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo input is invalid fix} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo input is invalid variable} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/histo inputs are not all global, peratom, or local} :dt
|
|
|
|
All inputs in a single fix ave/histo command must be of the
|
|
same style. :dd
|
|
|
|
{Fix ave/histo missed timestep} :dt
|
|
|
|
You cannot reset the timestep to a value beyond where the fix
|
|
expects to next perform averaging. :dd
|
|
|
|
{Fix ave/spatial compute does not calculate a per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/spatial compute does not calculate a per-atom vector} :dt
|
|
|
|
A compute used by fix ave/spatial must generate per-atom values. :dd
|
|
|
|
{Fix ave/spatial compute does not calculate per-atom values} :dt
|
|
|
|
A compute used by fix ave/spatial must generate per-atom values. :dd
|
|
|
|
{Fix ave/spatial compute vector is accessed out-of-range} :dt
|
|
|
|
The index for the vector is out of bounds. :dd
|
|
|
|
{Fix ave/spatial fix does not calculate a per-atom array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/spatial fix does not calculate a per-atom vector} :dt
|
|
|
|
A fix used by fix ave/spatial must generate per-atom values. :dd
|
|
|
|
{Fix ave/spatial fix does not calculate per-atom values} :dt
|
|
|
|
A fix used by fix ave/spatial must generate per-atom values. :dd
|
|
|
|
{Fix ave/spatial fix vector is accessed out-of-range} :dt
|
|
|
|
The index for the vector is out of bounds. :dd
|
|
|
|
{Fix ave/spatial for triclinic boxes requires units reduced} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/spatial missed timestep} :dt
|
|
|
|
You cannot reset the timestep to a value beyond where the fix
|
|
expects to next perform averaging. :dd
|
|
|
|
{Fix ave/spatial settings invalid with changing box size} :dt
|
|
|
|
If the box size changes, only the units reduced option can be
|
|
used. :dd
|
|
|
|
{Fix ave/spatial variable is not atom-style variable} :dt
|
|
|
|
A variable used by fix ave/spatial must generate per-atom values. :dd
|
|
|
|
{Fix ave/time cannot set output array intensive/extensive from these inputs} :dt
|
|
|
|
One of more of the vector inputs has individual elements which are
|
|
flagged as intensive or extensive. Such an input cannot be flagged as
|
|
all intensive/extensive when turned into an array by fix ave/time. :dd
|
|
|
|
{Fix ave/time cannot use variable with vector mode} :dt
|
|
|
|
Variables produce scalar values. :dd
|
|
|
|
{Fix ave/time columns are inconsistent lengths} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/time compute array is accessed out-of-range} :dt
|
|
|
|
An index for the array is out of bounds. :dd
|
|
|
|
{Fix ave/time compute does not calculate a scalar} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Fix ave/time compute does not calculate a vector} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Fix ave/time compute does not calculate an array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/time compute vector is accessed out-of-range} :dt
|
|
|
|
The index for the vector is out of bounds. :dd
|
|
|
|
{Fix ave/time fix array is accessed out-of-range} :dt
|
|
|
|
An index for the array is out of bounds. :dd
|
|
|
|
{Fix ave/time fix does not calculate a scalar} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/time fix does not calculate a vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/time fix does not calculate an array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ave/time fix vector is accessed out-of-range} :dt
|
|
|
|
The index for the vector is out of bounds. :dd
|
|
|
|
{Fix ave/time missed timestep} :dt
|
|
|
|
You cannot reset the timestep to a value beyond where the fix
|
|
expects to next perform averaging. :dd
|
|
|
|
{Fix ave/time variable is not equal-style variable} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix balance string is invalid} :dt
|
|
|
|
The string can only contain the characters "x", "y", or "z". :dd
|
|
|
|
{Fix balance string is invalid for 2d simulation} :dt
|
|
|
|
The string cannot contain the letter "z". :dd
|
|
|
|
{Fix bond/break requires special_bonds = 0,1,1} :dt
|
|
|
|
This is a restriction of the current fix bond/break implementation. :dd
|
|
|
|
{Fix bond/create cutoff is longer than pairwise cutoff} :dt
|
|
|
|
This is not allowed because bond creation is done using the
|
|
pairwise neighbor list. :dd
|
|
|
|
{Fix bond/create requires special_bonds coul = 0,1,1} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix bond/create requires special_bonds lj = 0,1,1} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix bond/swap cannot use dihedral or improper styles} :dt
|
|
|
|
These styles cannot be defined when using this fix. :dd
|
|
|
|
{Fix bond/swap requires pair and bond styles} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix bond/swap requires special_bonds = 0,1,1} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix box/relax generated negative box length} :dt
|
|
|
|
The pressure being applied is likely too large. Try applying
|
|
it incrementally, to build to the high pressure. :dd
|
|
|
|
{Fix command before simulation box is defined} :dt
|
|
|
|
The fix command cannot be used before a read_data, read_restart, or
|
|
create_box command. :dd
|
|
|
|
{Fix deform cannot use yz variable with xy} :dt
|
|
|
|
The yz setting cannot be a variable if xy deformation is also
|
|
specified. This is because LAMMPS cannot determine if the yz setting
|
|
will induce a box flip which would be invalid if xy is also changing. :dd
|
|
|
|
{Fix deform is changing yz too much with xy} :dt
|
|
|
|
When both yz and xy are changing, it induces changes in xz if the
|
|
box must flip from one tilt extreme to another. Thus it is not
|
|
allowed for yz to grow so much that a flip is induced. :dd
|
|
|
|
{Fix deform tilt factors require triclinic box} :dt
|
|
|
|
Cannot deform the tilt factors of a simulation box unless it
|
|
is a triclinic (non-orthogonal) box. :dd
|
|
|
|
{Fix deform volume setting is invalid} :dt
|
|
|
|
Cannot use volume style unless other dimensions are being controlled. :dd
|
|
|
|
{Fix deposit and fix rigid/small not using same molecule template ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix deposit and fix shake not using same molecule template ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix deposit molecule must have atom types} :dt
|
|
|
|
The defined molecule does not specify atom types. :dd
|
|
|
|
{Fix deposit molecule must have coordinates} :dt
|
|
|
|
The defined molecule does not specify coordinates. :dd
|
|
|
|
{Fix deposit molecule template ID must be same as atom_style template ID} :dt
|
|
|
|
When using atom_style template, you cannot deposit molecules that are
|
|
not in that template. :dd
|
|
|
|
{Fix deposit region cannot be dynamic} :dt
|
|
|
|
Only static regions can be used with fix deposit. :dd
|
|
|
|
{Fix deposit region does not support a bounding box} :dt
|
|
|
|
Not all regions represent bounded volumes. You cannot use
|
|
such a region with the fix deposit command. :dd
|
|
|
|
{Fix deposit shake fix does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix efield requires atom attribute q or mu} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Fix efield with dipoles cannot use atom-style variables} :dt
|
|
|
|
This option is not supported. :dd
|
|
|
|
{Fix evaporate molecule requires atom attribute molecule} :dt
|
|
|
|
The atom style being used does not define a molecule ID. :dd
|
|
|
|
{Fix external callback function not set} :dt
|
|
|
|
This must be done by an external program in order to use this fix. :dd
|
|
|
|
{Fix for fix ave/atom not computed at compatible time} :dt
|
|
|
|
Fixes generate their values on specific timesteps. Fix ave/atom is
|
|
requesting a value on a non-allowed timestep. :dd
|
|
|
|
{Fix for fix ave/correlate not computed at compatible time} :dt
|
|
|
|
Fixes generate their values on specific timesteps. Fix ave/correlate
|
|
is requesting a value on a non-allowed timestep. :dd
|
|
|
|
{Fix for fix ave/histo not computed at compatible time} :dt
|
|
|
|
Fixes generate their values on specific timesteps. Fix ave/histo is
|
|
requesting a value on a non-allowed timestep. :dd
|
|
|
|
{Fix for fix ave/spatial not computed at compatible time} :dt
|
|
|
|
Fixes generate their values on specific timesteps. Fix ave/spatial is
|
|
requesting a value on a non-allowed timestep. :dd
|
|
|
|
{Fix for fix ave/time not computed at compatible time} :dt
|
|
|
|
Fixes generate their values on specific timesteps. Fix ave/time
|
|
is requesting a value on a non-allowed timestep. :dd
|
|
|
|
{Fix for fix store/state not computed at compatible time} :dt
|
|
|
|
Fixes generate their values on specific timesteps. Fix store/state
|
|
is requesting a value on a non-allowed timestep. :dd
|
|
|
|
{Fix freeze requires atom attribute torque} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Fix gcmc cannot exchange individual atoms belonging to a molecule} :dt
|
|
|
|
This is an error since you should not delete only one atom of a molecule.
|
|
The user has specified atomic (non-molecular) gas exchanges, but an atom
|
|
belonging to a molecule could be deleted. :dd
|
|
|
|
{Fix gcmc could not find any atoms in the user-supplied template molecule} :dt
|
|
|
|
When using the molecule option with fix gcmc, the user must supply a
|
|
template molecule in the usual LAMMPS data file with its molecule id
|
|
specified in the fix gcmc command as the "type" of the exchanged gas. :dd
|
|
|
|
{Fix gcmc does not (yet) work with atom_style template} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix gcmc incompatible with given pair_style} :dt
|
|
|
|
Some pair_styles do not provide single-atom energies, which are needed
|
|
by fix gcmc. :dd
|
|
|
|
{Fix gcmc incorrect number of atoms per molecule} :dt
|
|
|
|
The number of atoms in each gas molecule was not computed correctly. :dd
|
|
|
|
{Fix gcmc molecule command requires that atoms have molecule attributes} :dt
|
|
|
|
Should not choose the GCMC molecule feature if no molecules are being
|
|
simulated. The general molecule flag is off, but GCMC's molecule flag
|
|
is on. :dd
|
|
|
|
{Fix gcmc ran out of available molecule IDs} :dt
|
|
|
|
See the setting for tagint in the src/lmptype.h file. :dd
|
|
|
|
{Fix gcmc region cannot be dynamic} :dt
|
|
|
|
Only static regions can be used with fix gcmc. :dd
|
|
|
|
{Fix gcmc region does not support a bounding box} :dt
|
|
|
|
Not all regions represent bounded volumes. You cannot use
|
|
such a region with the fix gcmc command. :dd
|
|
|
|
{Fix gcmc region extends outside simulation box} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix gld c coefficients must be >= 0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix gld needs more prony series coefficients} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix gld prony terms must be > 0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix gld series type must be pprony for now} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix gld start temperature must be >= 0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix gld stop temperature must be >= 0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix gld tau coefficients must be > 0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix heat group has no atoms} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix heat kinetic energy of an atom went negative} :dt
|
|
|
|
This will cause the velocity rescaling about to be performed by fix
|
|
heat to be invalid. :dd
|
|
|
|
{Fix heat kinetic energy went negative} :dt
|
|
|
|
This will cause the velocity rescaling about to be performed by fix
|
|
heat to be invalid. :dd
|
|
|
|
{Fix in variable not computed at compatible time} :dt
|
|
|
|
Fixes generate their values on specific timesteps. The variable is
|
|
requesting the values on a non-allowed timestep. :dd
|
|
|
|
{Fix langevin angmom requires atom style ellipsoid} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix langevin angmom requires extended particles} :dt
|
|
|
|
This fix option cannot be used with point paritlces. :dd
|
|
|
|
{Fix langevin omega requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix langevin omega requires extended particles} :dt
|
|
|
|
One of the particles has radius 0.0. :dd
|
|
|
|
{Fix langevin period must be > 0.0} :dt
|
|
|
|
The time window for temperature relaxation must be > 0 :dd
|
|
|
|
{Fix langevin variable returned negative temperature} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix momentum group has no atoms} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix move cannot define z or vz variable for 2d problem} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix move cannot rotate aroung non z-axis for 2d problem} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix move cannot set linear z motion for 2d problem} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix move cannot set wiggle z motion for 2d problem} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix msst compute ID does not compute potential energy} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix msst compute ID does not compute pressure} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix msst compute ID does not compute temperature} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix msst requires a periodic box} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix msst tscale must satisfy 0 <= tscale < 1} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix npt/nph has tilted box too far in one step - periodic cell is too far from equilibrium state} :dt
|
|
|
|
Self-explanatory. The change in the box tilt is too extreme
|
|
on a short timescale. :dd
|
|
|
|
{Fix nve/asphere requires extended particles} :dt
|
|
|
|
This fix can only be used for particles with a shape setting. :dd
|
|
|
|
{Fix nve/asphere/noforce requires atom style ellipsoid} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nve/asphere/noforce requires extended particles} :dt
|
|
|
|
One of the particles is not an ellipsoid. :dd
|
|
|
|
{Fix nve/body requires atom style body} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nve/body requires bodies} :dt
|
|
|
|
This fix can only be used for particles that are bodies. :dd
|
|
|
|
{Fix nve/line can only be used for 2d simulations} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nve/line requires atom style line} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nve/line requires line particles} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nve/sphere requires atom attribute mu} :dt
|
|
|
|
An atom style with this attribute is needed. :dd
|
|
|
|
{Fix nve/sphere requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nve/sphere requires extended particles} :dt
|
|
|
|
This fix can only be used for particles of a finite size. :dd
|
|
|
|
{Fix nve/tri can only be used for 3d simulations} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nve/tri requires atom style tri} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nve/tri requires tri particles} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nvt/nph/npt asphere requires extended particles} :dt
|
|
|
|
The shape setting for a particle in the fix group has shape = 0.0,
|
|
which means it is a point particle. :dd
|
|
|
|
{Fix nvt/nph/npt sphere requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nvt/npt/nph damping parameters must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nvt/npt/nph dilate group ID does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix nvt/sphere requires extended particles} :dt
|
|
|
|
This fix can only be used for particles of a finite size. :dd
|
|
|
|
{Fix orient/fcc file open failed} :dt
|
|
|
|
The fix orient/fcc command could not open a specified file. :dd
|
|
|
|
{Fix orient/fcc file read failed} :dt
|
|
|
|
The fix orient/fcc command could not read the needed parameters from a
|
|
specified file. :dd
|
|
|
|
{Fix orient/fcc found self twice} :dt
|
|
|
|
The neighbor lists used by fix orient/fcc are messed up. If this
|
|
error occurs, it is likely a bug, so send an email to the
|
|
"developers"_http://lammps.sandia.gov/authors.html. :dd
|
|
|
|
{Fix peri neigh does not exist} :dt
|
|
|
|
Somehow a fix that the pair style defines has been deleted. :dd
|
|
|
|
{Fix pour and fix rigid/small not using same molecule template ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix pour and fix shake not using same molecule template ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix pour molecule must have atom types} :dt
|
|
|
|
The defined molecule does not specify atom types. :dd
|
|
|
|
{Fix pour molecule must have coordinates} :dt
|
|
|
|
The defined molecule does not specify coordinates. :dd
|
|
|
|
{Fix pour molecule template ID must be same as atom style template ID} :dt
|
|
|
|
When using atom_style template, you cannot pour molecules that are
|
|
not in that template. :dd
|
|
|
|
{Fix pour polydisperse fractions do not sum to 1.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix pour region ID does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix pour region cannot be dynamic} :dt
|
|
|
|
Only static regions can be used with fix pour. :dd
|
|
|
|
{Fix pour region does not support a bounding box} :dt
|
|
|
|
Not all regions represent bounded volumes. You cannot use
|
|
such a region with the fix pour command. :dd
|
|
|
|
{Fix pour requires atom attributes radius, rmass} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Fix pour rigid fix does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix pour shake fix does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix press/berendsen damping parameters must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix property/atom cannot specify mol twice} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix property/atom cannot specify q twice} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix property/atom mol when atom_style already has molecule attribute} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix property/atom q when atom_style already has charge attribute} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix property/atom vector name already exists} :dt
|
|
|
|
The name for an integer or floating-point vector must be unique. :dd
|
|
|
|
{Fix qeq/comb group has no atoms} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix qeq/comb requires atom attribute q} :dt
|
|
|
|
An atom style with charge must be used to perform charge equilibration. :dd
|
|
|
|
{Fix reax/bonds numbonds > nsbmax_most} :dt
|
|
|
|
The limit of the number of bonds expected by the ReaxFF force field
|
|
was exceeded. :dd
|
|
|
|
{Fix recenter group has no atoms} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix restrain requires an atom map, see atom_modify} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid atom has non-zero image flag in a non-periodic dimension} :dt
|
|
|
|
Image flags for non-periodic dimensions should not be set. :dd
|
|
|
|
{Fix rigid file has no lines} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid langevin period must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid molecule requires atom attribute molecule} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid npt/nph dilate group ID does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid npt/nph does not yet allow triclinic box} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid npt/nph period must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid nvt/npt/nph damping parameters must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid xy torque cannot be on for 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid z force cannot be on for 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid/npt period must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid/npt temperature order must be 3 or 5} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid/nvt period must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid/nvt temperature order must be 3 or 5} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid/small atom has non-zero image flag in a non-periodic dimension} :dt
|
|
|
|
Image flags for non-periodic dimensions should not be set. :dd
|
|
|
|
{Fix rigid/small langevin period must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid/small molecule must have atom types} :dt
|
|
|
|
The defined molecule does not specify atom types. :dd
|
|
|
|
{Fix rigid/small molecule must have coordinates} :dt
|
|
|
|
The defined molecule does not specify coordinates. :dd
|
|
|
|
{Fix rigid/small requires an atom map, see atom_modify} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid/small requires atom attribute molecule} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix rigid: Bad principal moments} :dt
|
|
|
|
The principal moments of inertia computed for a rigid body
|
|
are not within the required tolerances. :dd
|
|
|
|
{Fix shake cannot be used with minimization} :dt
|
|
|
|
Cannot use fix shake while doing an energy minimization since
|
|
it turns off bonds that should contribute to the energy. :dd
|
|
|
|
{Fix shake molecule template must have shake info} :dt
|
|
|
|
The defined molecule does not specify SHAKE information. :dd
|
|
|
|
{Fix spring couple group ID does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix srd lamda must be >= 0.6 of SRD grid size} :dt
|
|
|
|
This is a requirement for accuracy reasons. :dd
|
|
|
|
{Fix srd requires SRD particles all have same mass} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix srd requires ghost atoms store velocity} :dt
|
|
|
|
Use the comm_modify vel yes command to enable this. :dd
|
|
|
|
{Fix srd requires newton pair on} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix store/state compute array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix store/state compute does not calculate a per-atom array} :dt
|
|
|
|
The compute calculates a per-atom vector. :dd
|
|
|
|
{Fix store/state compute does not calculate a per-atom vector} :dt
|
|
|
|
The compute calculates a per-atom vector. :dd
|
|
|
|
{Fix store/state compute does not calculate per-atom values} :dt
|
|
|
|
Computes that calculate global or local quantities cannot be used
|
|
with fix store/state. :dd
|
|
|
|
{Fix store/state fix array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix store/state fix does not calculate a per-atom array} :dt
|
|
|
|
The fix calculates a per-atom vector. :dd
|
|
|
|
{Fix store/state fix does not calculate a per-atom vector} :dt
|
|
|
|
The fix calculates a per-atom array. :dd
|
|
|
|
{Fix store/state fix does not calculate per-atom values} :dt
|
|
|
|
Fixes that calculate global or local quantities cannot be used with
|
|
fix store/state. :dd
|
|
|
|
{Fix store/state for atom property that isn't allocated} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix store/state variable is not atom-style variable} :dt
|
|
|
|
Only atom-style variables calculate per-atom quantities. :dd
|
|
|
|
{Fix temp/berendsen period must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix temp/berendsen variable returned negative temperature} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix temp/rescale variable returned negative temperature} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix thermal/conductivity swap value must be positive} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix tmd must come after integration fixes} :dt
|
|
|
|
Any fix tmd command must appear in the input script after all time
|
|
integration fixes (nve, nvt, npt). See the fix tmd documentation for
|
|
details. :dd
|
|
|
|
{Fix ttm electron temperatures must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ttm electronic_density must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ttm electronic_specific_heat must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ttm electronic_thermal_conductivity must be >= 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ttm gamma_p must be > 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ttm gamma_s must be >= 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ttm number of nodes must be > 0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix ttm v_0 must be >= 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix used in compute atom/molecule not computed at compatible time} :dt
|
|
|
|
The fix must produce per-atom quantities on timesteps that the compute
|
|
needs them. :dd
|
|
|
|
{Fix used in compute reduce not computed at compatible time} :dt
|
|
|
|
Fixes generate their values on specific timesteps. Compute reduce is
|
|
requesting a value on a non-allowed timestep. :dd
|
|
|
|
{Fix used in compute slice not computed at compatible time} :dt
|
|
|
|
Fixes generate their values on specific timesteps. Compute slice is
|
|
requesting a value on a non-allowed timestep. :dd
|
|
|
|
{Fix viscosity swap value must be positive} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix viscosity vtarget value must be positive} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix wall cutoff <= 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix wall/colloid requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix wall/colloid requires extended particles} :dt
|
|
|
|
One of the particles has radius 0.0. :dd
|
|
|
|
{Fix wall/gran is incompatible with Pair style} :dt
|
|
|
|
Must use a granular pair style to define the parameters needed for
|
|
this fix. :dd
|
|
|
|
{Fix wall/gran requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix wall/piston command only available at zlo} :dt
|
|
|
|
The face keyword must be zlo. :dd
|
|
|
|
{Fix wall/region colloid requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix wall/region colloid requires extended particles} :dt
|
|
|
|
One of the particles has radius 0.0. :dd
|
|
|
|
{Fix wall/region cutoff <= 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Fix_modify pressure ID does not compute pressure} :dt
|
|
|
|
The compute ID assigned to the fix must compute pressure. :dd
|
|
|
|
{Fix_modify temperature ID does not compute temperature} :dt
|
|
|
|
The compute ID assigned to the fix must compute temperature. :dd
|
|
|
|
{For triclinic deformation, specified target stress must be hydrostatic} :dt
|
|
|
|
Triclinic pressure control is allowed using the tri keyword, but
|
|
non-hydrostatic pressure control can not be used in this case. :dd
|
|
|
|
{Found no restart file matching pattern} :dt
|
|
|
|
When using a "*" in the restart file name, no matching file was found. :dd
|
|
|
|
{GPU library not compiled for this accelerator} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{GPU package does not (yet) work with atom_style template} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{GPU particle split must be set to 1 for this pair style.} :dt
|
|
|
|
For this pair style, you cannot run part of the force calculation on
|
|
the host. See the package command. :dd
|
|
|
|
{GPU split param must be positive for hybrid pair styles} :dt
|
|
|
|
See the package gpu command. :dd
|
|
|
|
{Gmask function in equal-style variable formula} :dt
|
|
|
|
Gmask is per-atom operation. :dd
|
|
|
|
{Gravity changed since fix pour was created} :dt
|
|
|
|
The gravity vector defined by fix gravity must be static. :dd
|
|
|
|
{Gravity must point in -y to use with fix pour in 2d} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Gravity must point in -z to use with fix pour in 3d} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Grmask function in equal-style variable formula} :dt
|
|
|
|
Grmask is per-atom operation. :dd
|
|
|
|
{Group ID does not exist} :dt
|
|
|
|
A group ID used in the group command does not exist. :dd
|
|
|
|
{Group ID in variable formula does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Group command before simulation box is defined} :dt
|
|
|
|
The group command cannot be used before a read_data, read_restart, or
|
|
create_box command. :dd
|
|
|
|
{Group region ID does not exist} :dt
|
|
|
|
A region ID used in the group command does not exist. :dd
|
|
|
|
{If read_dump purges it cannot replace or trim} :dt
|
|
|
|
These operations are not compatible. See the read_dump doc
|
|
page for details. :dd
|
|
|
|
{Illegal ... command} :dt
|
|
|
|
Self-explanatory. Check the input script syntax and compare to the
|
|
documentation for the command. You can use -echo screen as a
|
|
command-line option when running LAMMPS to see the offending line. :dd
|
|
|
|
{Illegal COMB parameter} :dt
|
|
|
|
One or more of the coefficients defined in the potential file is
|
|
invalid. :dd
|
|
|
|
{Illegal COMB3 parameter} :dt
|
|
|
|
One or more of the coefficients defined in the potential file is
|
|
invalid. :dd
|
|
|
|
{Illegal Stillinger-Weber parameter} :dt
|
|
|
|
One or more of the coefficients defined in the potential file is
|
|
invalid. :dd
|
|
|
|
{Illegal Tersoff parameter} :dt
|
|
|
|
One or more of the coefficients defined in the potential file is
|
|
invalid. :dd
|
|
|
|
{Illegal fix gcmc gas mass <= 0} :dt
|
|
|
|
The computed mass of the designated gas molecule or atom type was less
|
|
than or equal to zero. :dd
|
|
|
|
{Illegal fix wall/piston velocity} :dt
|
|
|
|
The piston velocity must be positive. :dd
|
|
|
|
{Illegal integrate style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Illegal nb3b/harmonic parameter} :dt
|
|
|
|
One or more of the coefficients defined in the potential file is
|
|
invalid. :dd
|
|
|
|
{Illegal number of angle table entries} :dt
|
|
|
|
There must be at least 2 table entries. :dd
|
|
|
|
{Illegal number of bond table entries} :dt
|
|
|
|
There must be at least 2 table entries. :dd
|
|
|
|
{Illegal number of pair table entries} :dt
|
|
|
|
There must be at least 2 table entries. :dd
|
|
|
|
{Illegal simulation box} :dt
|
|
|
|
The lower bound of the simulation box is greater than the upper bound. :dd
|
|
|
|
{Imageint setting in lmptype.h is invalid} :dt
|
|
|
|
Imageint must be as large or larger than smallint. :dd
|
|
|
|
{Imageint setting in lmptype.h is not compatible} :dt
|
|
|
|
Format of imageint stored in restart file is not consistent with
|
|
LAMMPS version you are running. See the settings in src/lmptype.h :dd
|
|
|
|
{Improper atom missing in delete_bonds} :dt
|
|
|
|
The delete_bonds command cannot find one or more atoms in a particular
|
|
improper on a particular processor. The pairwise cutoff is too short
|
|
or the atoms are too far apart to make a valid improper. :dd
|
|
|
|
{Improper atom missing in set command} :dt
|
|
|
|
The set command cannot find one or more atoms in a particular improper
|
|
on a particular processor. The pairwise cutoff is too short or the
|
|
atoms are too far apart to make a valid improper. :dd
|
|
|
|
{Improper atoms %d %d %d %d missing on proc %d at step %ld} :dt
|
|
|
|
One or more of 4 atoms needed to compute a particular improper are
|
|
missing on this processor. Typically this is because the pairwise
|
|
cutoff is set too short or the improper has blown apart and an atom is
|
|
too far away. :dd
|
|
|
|
{Improper coeff for hybrid has invalid style} :dt
|
|
|
|
Improper style hybrid uses another improper style as one of its
|
|
coefficients. The improper style used in the improper_coeff command
|
|
or read from a restart file is not recognized. :dd
|
|
|
|
{Improper coeffs are not set} :dt
|
|
|
|
No improper coefficients have been assigned in the data file or via
|
|
the improper_coeff command. :dd
|
|
|
|
{Improper style hybrid cannot have hybrid as an argument} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Improper style hybrid cannot have none as an argument} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Improper style hybrid cannot use same improper style twice} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Improper_coeff command before improper_style is defined} :dt
|
|
|
|
Coefficients cannot be set in the data file or via the improper_coeff
|
|
command until an improper_style has been assigned. :dd
|
|
|
|
{Improper_coeff command before simulation box is defined} :dt
|
|
|
|
The improper_coeff command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Improper_coeff command when no impropers allowed} :dt
|
|
|
|
The chosen atom style does not allow for impropers to be defined. :dd
|
|
|
|
{Improper_style command when no impropers allowed} :dt
|
|
|
|
The chosen atom style does not allow for impropers to be defined. :dd
|
|
|
|
{Impropers assigned incorrectly} :dt
|
|
|
|
Impropers read in from the data file were not assigned correctly to
|
|
atoms. This means there is something invalid about the topology
|
|
definitions. :dd
|
|
|
|
{Impropers defined but no improper types} :dt
|
|
|
|
The data file header lists improper but no improper types. :dd
|
|
|
|
{Inconsistent iparam/jparam values in fix bond/create command} :dt
|
|
|
|
If itype and jtype are the same, then their maxbond and newtype
|
|
settings must also be the same. :dd
|
|
|
|
{Inconsistent line segment in data file} :dt
|
|
|
|
The end points of the line segment are not equal distances from the
|
|
center point which is the atom coordinate. :dd
|
|
|
|
{Inconsistent triangle in data file} :dt
|
|
|
|
The centroid of the triangle as defined by the corner points is not
|
|
the atom coordinate. :dd
|
|
|
|
{Incorrect # of floating-point values in Bodies section of data file} :dt
|
|
|
|
See doc page for body style. :dd
|
|
|
|
{Incorrect # of integer values in Bodies section of data file} :dt
|
|
|
|
See doc page for body style. :dd
|
|
|
|
{Incorrect %s format in data file} :dt
|
|
|
|
A section of the data file being read by fix property/atom does
|
|
not have the correct number of values per line. :dd
|
|
|
|
{Incorrect args for angle coefficients} :dt
|
|
|
|
Self-explanatory. Check the input script or data file. :dd
|
|
|
|
{Incorrect args for bond coefficients} :dt
|
|
|
|
Self-explanatory. Check the input script or data file. :dd
|
|
|
|
{Incorrect args for dihedral coefficients} :dt
|
|
|
|
Self-explanatory. Check the input script or data file. :dd
|
|
|
|
{Incorrect args for improper coefficients} :dt
|
|
|
|
Self-explanatory. Check the input script or data file. :dd
|
|
|
|
{Incorrect args for pair coefficients} :dt
|
|
|
|
Self-explanatory. Check the input script or data file. :dd
|
|
|
|
{Incorrect args in pair_style command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Incorrect atom format in data file} :dt
|
|
|
|
Number of values per atom line in the data file is not consistent with
|
|
the atom style. :dd
|
|
|
|
{Incorrect atom format in neb file} :dt
|
|
|
|
The number of fields per line is not what expected. :dd
|
|
|
|
{Incorrect bonus data format in data file} :dt
|
|
|
|
See the read_data doc page for a description of how various kinds of
|
|
bonus data must be formatted for certain atom styles. :dd
|
|
|
|
{Incorrect boundaries with slab Ewald} :dt
|
|
|
|
Must have periodic x,y dimensions and non-periodic z dimension to use
|
|
2d slab option with Ewald. :dd
|
|
|
|
{Incorrect boundaries with slab EwaldDisp} :dt
|
|
|
|
Must have periodic x,y dimensions and non-periodic z dimension to use
|
|
2d slab option with Ewald. :dd
|
|
|
|
{Incorrect boundaries with slab PPPM} :dt
|
|
|
|
Must have periodic x,y dimensions and non-periodic z dimension to use
|
|
2d slab option with PPPM. :dd
|
|
|
|
{Incorrect boundaries with slab PPPMDisp} :dt
|
|
|
|
Must have periodic x,y dimensions and non-periodic z dimension to use
|
|
2d slab option with pppm/disp. :dd
|
|
|
|
{Incorrect element names in ADP potential file} :dt
|
|
|
|
The element names in the ADP file do not match those requested. :dd
|
|
|
|
{Incorrect element names in EAM potential file} :dt
|
|
|
|
The element names in the EAM file do not match those requested. :dd
|
|
|
|
{Incorrect format in COMB potential file} :dt
|
|
|
|
Incorrect number of words per line in the potential file. :dd
|
|
|
|
{Incorrect format in COMB3 potential file} :dt
|
|
|
|
Incorrect number of words per line in the potential file. :dd
|
|
|
|
{Incorrect format in MEAM potential file} :dt
|
|
|
|
Incorrect number of words per line in the potential file. :dd
|
|
|
|
{Incorrect format in Stillinger-Weber potential file} :dt
|
|
|
|
Incorrect number of words per line in the potential file. :dd
|
|
|
|
{Incorrect format in TMD target file} :dt
|
|
|
|
Format of file read by fix tmd command is incorrect. :dd
|
|
|
|
{Incorrect format in Tersoff potential file} :dt
|
|
|
|
Incorrect number of words per line in the potential file. :dd
|
|
|
|
{Incorrect format in nb3b/harmonic potential file} :dt
|
|
|
|
Incorrect number of words per line in the potential file. :dd
|
|
|
|
{Incorrect integer value in Bodies section of data file} :dt
|
|
|
|
See doc page for body style. :dd
|
|
|
|
{Incorrect multiplicity arg for dihedral coefficients} :dt
|
|
|
|
Self-explanatory. Check the input script or data file. :dd
|
|
|
|
{Incorrect rigid body format in fix rigid file} :dt
|
|
|
|
The number of fields per line is not what expected. :dd
|
|
|
|
{Incorrect rigid body format in fix rigid/small file} :dt
|
|
|
|
The number of fields per line is not what expected. :dd
|
|
|
|
{Incorrect sign arg for dihedral coefficients} :dt
|
|
|
|
Self-explanatory. Check the input script or data file. :dd
|
|
|
|
{Incorrect velocity format in data file} :dt
|
|
|
|
Each atom style defines a format for the Velocity section
|
|
of the data file. The read-in lines do not match. :dd
|
|
|
|
{Incorrect weight arg for dihedral coefficients} :dt
|
|
|
|
Self-explanatory. Check the input script or data file. :dd
|
|
|
|
{Index between variable brackets must be positive} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Indexed per-atom vector in variable formula without atom map} :dt
|
|
|
|
Accessing a value from an atom vector requires the ability to lookup
|
|
an atom index, which is provided by an atom map. An atom map does not
|
|
exist (by default) for non-molecular problems. Using the atom_modify
|
|
map command will force an atom map to be created. :dd
|
|
|
|
{Initial temperatures not all set in fix ttm} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Input line quote not followed by whitespace} :dt
|
|
|
|
An end quote must be followed by whitespace. :dd
|
|
|
|
{Insertion region extends outside simulation box} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Insufficient Jacobi rotations for POEMS body} :dt
|
|
|
|
Eigensolve for rigid body was not sufficiently accurate. :dd
|
|
|
|
{Insufficient Jacobi rotations for body nparticle} :dt
|
|
|
|
Eigensolve for rigid body was not sufficiently accurate. :dd
|
|
|
|
{Insufficient Jacobi rotations for rigid body} :dt
|
|
|
|
Eigensolve for rigid body was not sufficiently accurate. :dd
|
|
|
|
{Insufficient Jacobi rotations for rigid molecule} :dt
|
|
|
|
Eigensolve for rigid body was not sufficiently accurate. :dd
|
|
|
|
{Insufficient Jacobi rotations for triangle} :dt
|
|
|
|
The calculation of the intertia tensor of the triangle failed. This
|
|
should not happen if it is a reasonably shaped triangle. :dd
|
|
|
|
{Insufficient memory on accelerator} :dt
|
|
|
|
There is insufficient memory on one of the devices specified for the gpu
|
|
package :dd
|
|
|
|
{Internal error in atom_style body} :dt
|
|
|
|
This error should not occur. Contact the developers. :dd
|
|
|
|
{Invalid -reorder N value} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid Boolean syntax in if command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid LAMMPS restart file} :dt
|
|
|
|
The file does not appear to be a LAMMPS restart file since
|
|
it doesn't contain the correct magic string at the beginning. :dd
|
|
|
|
{Invalid REAX atom type} :dt
|
|
|
|
There is a mis-match between LAMMPS atom types and the elements
|
|
listed in the ReaxFF force field file. :dd
|
|
|
|
{Invalid angle style} :dt
|
|
|
|
The choice of angle style is unknown. :dd
|
|
|
|
{Invalid angle table length} :dt
|
|
|
|
Length must be 2 or greater. :dd
|
|
|
|
{Invalid angle type in Angles section of data file} :dt
|
|
|
|
Angle type must be positive integer and within range of specified angle
|
|
types. :dd
|
|
|
|
{Invalid angle type in Angles section of molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid angle type index for fix shake} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid args for non-hybrid pair coefficients} :dt
|
|
|
|
"NULL" is only supported in pair_coeff calls when using pair hybrid :dd
|
|
|
|
{Invalid atom ID in %s section of data file} :dt
|
|
|
|
An atom in a section of the data file being read by fix property/atom
|
|
has an invalid atom ID that is <= 0 or > the maximum existing atom ID. :dd
|
|
|
|
{Invalid atom ID in Angles section of data file} :dt
|
|
|
|
Atom IDs must be positive integers and within range of defined
|
|
atoms. :dd
|
|
|
|
{Invalid atom ID in Angles section of molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid atom ID in Atoms section of data file} :dt
|
|
|
|
Atom IDs must be positive integers. :dd
|
|
|
|
{Invalid atom ID in Bodies section of data file} :dt
|
|
|
|
Atom IDs must be positive integers and within range of defined
|
|
atoms. :dd
|
|
|
|
{Invalid atom ID in Bonds section of data file} :dt
|
|
|
|
Atom IDs must be positive integers and within range of defined
|
|
atoms. :dd
|
|
|
|
{Invalid atom ID in Bonds section of molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid atom ID in Bonus section of data file} :dt
|
|
|
|
Atom IDs must be positive integers and within range of defined
|
|
atoms. :dd
|
|
|
|
{Invalid atom ID in Dihedrals section of data file} :dt
|
|
|
|
Atom IDs must be positive integers and within range of defined
|
|
atoms. :dd
|
|
|
|
{Invalid atom ID in Impropers section of data file} :dt
|
|
|
|
Atom IDs must be positive integers and within range of defined
|
|
atoms. :dd
|
|
|
|
{Invalid atom ID in Velocities section of data file} :dt
|
|
|
|
Atom IDs must be positive integers and within range of defined
|
|
atoms. :dd
|
|
|
|
{Invalid atom ID in dihedrals section of molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid atom ID in impropers section of molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid atom ID in variable file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid atom IDs in neb file} :dt
|
|
|
|
An ID in the file was not found in the system. :dd
|
|
|
|
{Invalid atom diameter in molecule file} :dt
|
|
|
|
Diameters must be >= 0.0. :dd
|
|
|
|
{Invalid atom mass for fix shake} :dt
|
|
|
|
Mass specified in fix shake command must be > 0.0. :dd
|
|
|
|
{Invalid atom mass in molecule file} :dt
|
|
|
|
Masses must be > 0.0. :dd
|
|
|
|
{Invalid atom style} :dt
|
|
|
|
The choice of atom style is unknown. :dd
|
|
|
|
{Invalid atom type in Atoms section of data file} :dt
|
|
|
|
Atom types must range from 1 to specified # of types. :dd
|
|
|
|
{Invalid atom type in create_atoms command} :dt
|
|
|
|
The create_box command specified the range of valid atom types.
|
|
An invalid type is being requested. :dd
|
|
|
|
{Invalid atom type in create_atoms mol command} :dt
|
|
|
|
The atom types in the defined molecule are added to the value
|
|
specified in the create_atoms command, as an offset. The final value
|
|
for each atom must be between 1 to N, where N is the number of atom
|
|
types. :dd
|
|
|
|
{Invalid atom type in fix bond/create command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid atom type in fix deposit command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid atom type in fix deposit mol command} :dt
|
|
|
|
The atom types in the defined molecule are added to the value
|
|
specified in the create_atoms command, as an offset. The final value
|
|
for each atom must be between 1 to N, where N is the number of atom
|
|
types. :dd
|
|
|
|
{Invalid atom type in fix gcmc command} :dt
|
|
|
|
The atom type specified in the GCMC command does not exist. :dd
|
|
|
|
{Invalid atom type in fix pour command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid atom type in fix pour mol command} :dt
|
|
|
|
The atom types in the defined molecule are added to the value
|
|
specified in the create_atoms command, as an offset. The final value
|
|
for each atom must be between 1 to N, where N is the number of atom
|
|
types. :dd
|
|
|
|
{Invalid atom type in molecule file} :dt
|
|
|
|
Atom types must range from 1 to specified # of types. :dd
|
|
|
|
{Invalid atom type in neighbor exclusion list} :dt
|
|
|
|
Atom types must range from 1 to Ntypes inclusive. :dd
|
|
|
|
{Invalid atom type index for fix shake} :dt
|
|
|
|
Atom types must range from 1 to Ntypes inclusive. :dd
|
|
|
|
{Invalid atom types in pair_write command} :dt
|
|
|
|
Atom types must range from 1 to Ntypes inclusive. :dd
|
|
|
|
{Invalid atom vector in variable formula} :dt
|
|
|
|
The atom vector is not recognized. :dd
|
|
|
|
{Invalid atom_style body command} :dt
|
|
|
|
No body style argument was provided. :dd
|
|
|
|
{Invalid atom_style command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid attribute in dump custom command} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Invalid attribute in dump local command} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Invalid attribute in dump modify command} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Invalid basis setting in create_atoms command} :dt
|
|
|
|
The basis index must be between 1 to N where N is the number of basis
|
|
atoms in the lattice. The type index must be between 1 to N where N
|
|
is the number of atom types. :dd
|
|
|
|
{Invalid basis setting in fix append/atoms command} :dt
|
|
|
|
The basis index must be between 1 to N where N is the number of basis
|
|
atoms in the lattice. The type index must be between 1 to N where N
|
|
is the number of atom types. :dd
|
|
|
|
{Invalid body nparticle command} :dt
|
|
|
|
Arguments in atom-style command are not correct. :dd
|
|
|
|
{Invalid body style} :dt
|
|
|
|
The choice of body style is unknown. :dd
|
|
|
|
{Invalid bond style} :dt
|
|
|
|
The choice of bond style is unknown. :dd
|
|
|
|
{Invalid bond table length} :dt
|
|
|
|
Length must be 2 or greater. :dd
|
|
|
|
{Invalid bond type in Bonds section of data file} :dt
|
|
|
|
Bond type must be positive integer and within range of specified bond
|
|
types. :dd
|
|
|
|
{Invalid bond type in Bonds section of molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid bond type in fix bond/break command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid bond type in fix bond/create command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid bond type index for fix shake} :dt
|
|
|
|
Self-explanatory. Check the fix shake command in the input script. :dd
|
|
|
|
{Invalid coeffs for this dihedral style} :dt
|
|
|
|
Cannot set class 2 coeffs in data file for this dihedral style. :dd
|
|
|
|
{Invalid color in dump_modify command} :dt
|
|
|
|
The specified color name was not in the list of recognized colors.
|
|
See the dump_modify doc page. :dd
|
|
|
|
{Invalid color map min/max values} :dt
|
|
|
|
The min/max values are not consistent with either each other or
|
|
with values in the color map. :dd
|
|
|
|
{Invalid command-line argument} :dt
|
|
|
|
One or more command-line arguments is invalid. Check the syntax of
|
|
the command you are using to launch LAMMPS. :dd
|
|
|
|
{Invalid compute ID in variable formula} :dt
|
|
|
|
The compute is not recognized. :dd
|
|
|
|
{Invalid compute style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid custom OpenCL parameter string.} :dt
|
|
|
|
There are not enough or too many parameters in the custom string for package
|
|
GPU. :dd
|
|
|
|
{Invalid cutoff in communicate command} :dt
|
|
|
|
Specified cutoff must be >= 0.0. :dd
|
|
|
|
{Invalid cutoffs in pair_write command} :dt
|
|
|
|
Inner cutoff must be larger than 0.0 and less than outer cutoff. :dd
|
|
|
|
{Invalid d1 or d2 value for pair colloid coeff} :dt
|
|
|
|
Neither d1 or d2 can be < 0. :dd
|
|
|
|
{Invalid data file section: Angle Coeffs} :dt
|
|
|
|
Atom style does not allow angles. :dd
|
|
|
|
{Invalid data file section: AngleAngle Coeffs} :dt
|
|
|
|
Atom style does not allow impropers. :dd
|
|
|
|
{Invalid data file section: AngleAngleTorsion Coeffs} :dt
|
|
|
|
Atom style does not allow dihedrals. :dd
|
|
|
|
{Invalid data file section: AngleTorsion Coeffs} :dt
|
|
|
|
Atom style does not allow dihedrals. :dd
|
|
|
|
{Invalid data file section: Angles} :dt
|
|
|
|
Atom style does not allow angles. :dd
|
|
|
|
{Invalid data file section: Bodies} :dt
|
|
|
|
Atom style does not allow bodies. :dd
|
|
|
|
{Invalid data file section: Bond Coeffs} :dt
|
|
|
|
Atom style does not allow bonds. :dd
|
|
|
|
{Invalid data file section: BondAngle Coeffs} :dt
|
|
|
|
Atom style does not allow angles. :dd
|
|
|
|
{Invalid data file section: BondBond Coeffs} :dt
|
|
|
|
Atom style does not allow angles. :dd
|
|
|
|
{Invalid data file section: BondBond13 Coeffs} :dt
|
|
|
|
Atom style does not allow dihedrals. :dd
|
|
|
|
{Invalid data file section: Bonds} :dt
|
|
|
|
Atom style does not allow bonds. :dd
|
|
|
|
{Invalid data file section: Dihedral Coeffs} :dt
|
|
|
|
Atom style does not allow dihedrals. :dd
|
|
|
|
{Invalid data file section: Dihedrals} :dt
|
|
|
|
Atom style does not allow dihedrals. :dd
|
|
|
|
{Invalid data file section: Ellipsoids} :dt
|
|
|
|
Atom style does not allow ellipsoids. :dd
|
|
|
|
{Invalid data file section: EndBondTorsion Coeffs} :dt
|
|
|
|
Atom style does not allow dihedrals. :dd
|
|
|
|
{Invalid data file section: Improper Coeffs} :dt
|
|
|
|
Atom style does not allow impropers. :dd
|
|
|
|
{Invalid data file section: Impropers} :dt
|
|
|
|
Atom style does not allow impropers. :dd
|
|
|
|
{Invalid data file section: Lines} :dt
|
|
|
|
Atom style does not allow lines. :dd
|
|
|
|
{Invalid data file section: MiddleBondTorsion Coeffs} :dt
|
|
|
|
Atom style does not allow dihedrals. :dd
|
|
|
|
{Invalid data file section: Triangles} :dt
|
|
|
|
Atom style does not allow triangles. :dd
|
|
|
|
{Invalid delta_conf in tad command} :dt
|
|
|
|
The value must be between 0 and 1 inclusive. :dd
|
|
|
|
{Invalid density in Atoms section of data file} :dt
|
|
|
|
Density value cannot be <= 0.0. :dd
|
|
|
|
{Invalid density in set command} :dt
|
|
|
|
Density must be > 0.0. :dd
|
|
|
|
{Invalid diameter in set command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid dihedral style} :dt
|
|
|
|
The choice of dihedral style is unknown. :dd
|
|
|
|
{Invalid dihedral type in Dihedrals section of data file} :dt
|
|
|
|
Dihedral type must be positive integer and within range of specified
|
|
dihedral types. :dd
|
|
|
|
{Invalid dihedral type in dihedrals section of molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid dipole length in set command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid displace_atoms rotate axis for 2d} :dt
|
|
|
|
Axis must be in z direction. :dd
|
|
|
|
{Invalid dump dcd filename} :dt
|
|
|
|
Filenames used with the dump dcd style cannot be binary or compressed
|
|
or cause multiple files to be written. :dd
|
|
|
|
{Invalid dump frequency} :dt
|
|
|
|
Dump frequency must be 1 or greater. :dd
|
|
|
|
{Invalid dump image element name} :dt
|
|
|
|
The specified element name was not in the standard list of elements.
|
|
See the dump_modify doc page. :dd
|
|
|
|
{Invalid dump image filename} :dt
|
|
|
|
The file produced by dump image cannot be binary and must
|
|
be for a single processor. :dd
|
|
|
|
{Invalid dump image persp value} :dt
|
|
|
|
Persp value must be >= 0.0. :dd
|
|
|
|
{Invalid dump image theta value} :dt
|
|
|
|
Theta must be between 0.0 and 180.0 inclusive. :dd
|
|
|
|
{Invalid dump image zoom value} :dt
|
|
|
|
Zoom value must be > 0.0. :dd
|
|
|
|
{Invalid dump movie filename} :dt
|
|
|
|
The file produced by dump movie cannot be binary or compressed
|
|
and must be a single file for a single processor. :dd
|
|
|
|
{Invalid dump reader style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid dump style} :dt
|
|
|
|
The choice of dump style is unknown. :dd
|
|
|
|
{Invalid dump xtc filename} :dt
|
|
|
|
Filenames used with the dump xtc style cannot be binary or compressed
|
|
or cause multiple files to be written. :dd
|
|
|
|
{Invalid dump xyz filename} :dt
|
|
|
|
Filenames used with the dump xyz style cannot be binary or cause files
|
|
to be written by each processor. :dd
|
|
|
|
{Invalid dump_modify threshhold operator} :dt
|
|
|
|
Operator keyword used for threshold specification in not recognized. :dd
|
|
|
|
{Invalid entry in -reorder file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid fix ID in variable formula} :dt
|
|
|
|
The fix is not recognized. :dd
|
|
|
|
{Invalid fix ave/time off column} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Invalid fix box/relax command for a 2d simulation} :dt
|
|
|
|
Fix box/relax styles involving the z dimension cannot be used in
|
|
a 2d simulation. :dd
|
|
|
|
{Invalid fix box/relax command pressure settings} :dt
|
|
|
|
If multiple dimensions are coupled, those dimensions must be specified. :dd
|
|
|
|
{Invalid fix box/relax pressure settings} :dt
|
|
|
|
Settings for coupled dimensions must be the same. :dd
|
|
|
|
{Invalid fix nvt/npt/nph command for a 2d simulation} :dt
|
|
|
|
Cannot control z dimension in a 2d model. :dd
|
|
|
|
{Invalid fix nvt/npt/nph command pressure settings} :dt
|
|
|
|
If multiple dimensions are coupled, those dimensions must be
|
|
specified. :dd
|
|
|
|
{Invalid fix nvt/npt/nph pressure settings} :dt
|
|
|
|
Settings for coupled dimensions must be the same. :dd
|
|
|
|
{Invalid fix press/berendsen for a 2d simulation} :dt
|
|
|
|
The z component of pressure cannot be controlled for a 2d model. :dd
|
|
|
|
{Invalid fix press/berendsen pressure settings} :dt
|
|
|
|
Settings for coupled dimensions must be the same. :dd
|
|
|
|
{Invalid fix rigid npt/nph command for a 2d simulation} :dt
|
|
|
|
Cannot control z dimension in a 2d model. :dd
|
|
|
|
{Invalid fix rigid npt/nph command pressure settings} :dt
|
|
|
|
If multiple dimensions are coupled, those dimensions must be
|
|
specified. :dd
|
|
|
|
{Invalid fix rigid npt/nph pressure settings} :dt
|
|
|
|
Settings for coupled dimensions must be the same. :dd
|
|
|
|
{Invalid fix style} :dt
|
|
|
|
The choice of fix style is unknown. :dd
|
|
|
|
{Invalid flag in force field section of restart file} :dt
|
|
|
|
Unrecognized entry in restart file. :dd
|
|
|
|
{Invalid flag in header section of restart file} :dt
|
|
|
|
Unrecognized entry in restart file. :dd
|
|
|
|
{Invalid flag in peratom section of restart file} :dt
|
|
|
|
The format of this section of the file is not correct. :dd
|
|
|
|
{Invalid flag in type arrays section of restart file} :dt
|
|
|
|
Unrecognized entry in restart file. :dd
|
|
|
|
{Invalid format in Bodies section of data file} :dt
|
|
|
|
The specified number of integer or floating point values does not
|
|
appear. :dd
|
|
|
|
{Invalid frequency in temper command} :dt
|
|
|
|
Nevery must be > 0. :dd
|
|
|
|
{Invalid group ID in neigh_modify command} :dt
|
|
|
|
A group ID used in the neigh_modify command does not exist. :dd
|
|
|
|
{Invalid group function in variable formula} :dt
|
|
|
|
Group function is not recognized. :dd
|
|
|
|
{Invalid group in communicate command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid image up vector} :dt
|
|
|
|
Up vector cannot be (0,0,0). :dd
|
|
|
|
{Invalid immediate variable} :dt
|
|
|
|
Syntax of immediate value is incorrect. :dd
|
|
|
|
{Invalid improper style} :dt
|
|
|
|
The choice of improper style is unknown. :dd
|
|
|
|
{Invalid improper type in Impropers section of data file} :dt
|
|
|
|
Improper type must be positive integer and within range of specified
|
|
improper types. :dd
|
|
|
|
{Invalid improper type in impropers section of molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid index for non-body particles in compute body/local command} :dt
|
|
|
|
Only indices 1,2,3 can be used for non-body particles. :dd
|
|
|
|
{Invalid index in compute body/local command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in angle table parameters} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in bond table parameters} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in compute angle/local command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in compute bond/local command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in compute dihedral/local command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in compute improper/local command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in compute pair/local command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in compute property/atom command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in compute property/local command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in compute property/molecule command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in dump cfg command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid keyword in pair table parameters} :dt
|
|
|
|
Keyword used in list of table parameters is not recognized. :dd
|
|
|
|
{Invalid keyword in thermo_style custom command} :dt
|
|
|
|
One or more specified keywords are not recognized. :dd
|
|
|
|
{Invalid kspace style} :dt
|
|
|
|
The choice of kspace style is unknown. :dd
|
|
|
|
{Invalid length in set command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid mass in set command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid mass line in data file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid mass value} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid math function in variable formula} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid math/group/special function in variable formula} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid option in lattice command for non-custom style} :dt
|
|
|
|
Certain lattice keywords are not supported unless the
|
|
lattice style is "custom". :dd
|
|
|
|
{Invalid order of forces within respa levels} :dt
|
|
|
|
For respa, ordering of force computations within respa levels must
|
|
obey certain rules. E.g. bonds cannot be compute less frequently than
|
|
angles, pairwise forces cannot be computed less frequently than
|
|
kspace, etc. :dd
|
|
|
|
{Invalid pair style} :dt
|
|
|
|
The choice of pair style is unknown. :dd
|
|
|
|
{Invalid pair table cutoff} :dt
|
|
|
|
Cutoffs in pair_coeff command are not valid with read-in pair table. :dd
|
|
|
|
{Invalid pair table length} :dt
|
|
|
|
Length of read-in pair table is invalid :dd
|
|
|
|
{Invalid partitions in processors part command} :dt
|
|
|
|
Valid partitions are numbered 1 to N and the sender and receiver
|
|
cannot be the same partition. :dd
|
|
|
|
{Invalid radius in Atoms section of data file} :dt
|
|
|
|
Radius must be >= 0.0. :dd
|
|
|
|
{Invalid random number seed in fix ttm command} :dt
|
|
|
|
Random number seed must be > 0. :dd
|
|
|
|
{Invalid random number seed in set command} :dt
|
|
|
|
Random number seed must be > 0. :dd
|
|
|
|
{Invalid region style} :dt
|
|
|
|
The choice of region style is unknown. :dd
|
|
|
|
{Invalid replace values in compute reduce} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid rigid body ID in fix rigid file} :dt
|
|
|
|
The ID does not match the number of an existing ID of rigid bodies
|
|
that are defined by the fix rigid command. :dd
|
|
|
|
{Invalid rigid body ID in fix rigid/small file} :dt
|
|
|
|
The ID does not match the number of an existing ID of rigid bodies
|
|
that are defined by the fix rigid/small command. :dd
|
|
|
|
{Invalid run command N value} :dt
|
|
|
|
The number of timesteps must fit in a 32-bit integer. If you want to
|
|
run for more steps than this, perform multiple shorter runs. :dd
|
|
|
|
{Invalid run command start/stop value} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid run command upto value} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid seed for Marsaglia random # generator} :dt
|
|
|
|
The initial seed for this random number generator must be a positive
|
|
integer less than or equal to 900 million. :dd
|
|
|
|
{Invalid seed for Park random # generator} :dt
|
|
|
|
The initial seed for this random number generator must be a positive
|
|
integer. :dd
|
|
|
|
{Invalid shake angle type in molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid shake atom in molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid shake bond type in molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid shake flag in molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid shape in Ellipsoids section of data file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid shape in Triangles section of data file} :dt
|
|
|
|
Two or more of the triangle corners are duplicate points. :dd
|
|
|
|
{Invalid shape in set command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid shear direction for fix wall/gran} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid special atom index in molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid special function in variable formula} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid style in pair_write command} :dt
|
|
|
|
Self-explanatory. Check the input script. :dd
|
|
|
|
{Invalid syntax in variable formula} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid t_event in prd command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid t_event in tad command} :dt
|
|
|
|
The value must be greater than 0. :dd
|
|
|
|
{Invalid template atom in Atoms section of data file} :dt
|
|
|
|
The atom indices must be between 1 to N, where N is the number of
|
|
atoms in the template molecule the atom belongs to. :dd
|
|
|
|
{Invalid template index in Atoms section of data file} :dt
|
|
|
|
The template indices must be between 1 to N, where N is the number of
|
|
molecules in the template. :dd
|
|
|
|
{Invalid thermo keyword in variable formula} :dt
|
|
|
|
The keyword is not recognized. :dd
|
|
|
|
{Invalid threads_per_atom specified.} :dt
|
|
|
|
For 3-body potentials on the GPU, the threads_per_atom setting cannot be
|
|
greater than 4 for NVIDIA GPUs. :dd
|
|
|
|
{Invalid tmax in tad command} :dt
|
|
|
|
The value must be greater than 0.0. :dd
|
|
|
|
{Invalid type for mass set} :dt
|
|
|
|
Mass command must set a type from 1-N where N is the number of atom
|
|
types. :dd
|
|
|
|
{Invalid use of library file() function} :dt
|
|
|
|
This function is called thru the library interface. This
|
|
error should not occur. Contact the developers if it does. :dd
|
|
|
|
{Invalid value in set command} :dt
|
|
|
|
The value specified for the setting is invalid, likely because it is
|
|
too small or too large. :dd
|
|
|
|
{Invalid variable evaluation in variable formula} :dt
|
|
|
|
A variable used in a formula could not be evaluated. :dd
|
|
|
|
{Invalid variable in next command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invalid variable name} :dt
|
|
|
|
Variable name used in an input script line is invalid. :dd
|
|
|
|
{Invalid variable name in variable formula} :dt
|
|
|
|
Variable name is not recognized. :dd
|
|
|
|
{Invalid variable style in special function next} :dt
|
|
|
|
Only file-style or atomfile-style variables can be used with next(). :dd
|
|
|
|
{Invalid variable style with next command} :dt
|
|
|
|
Variable styles {equal} and {world} cannot be used in a next
|
|
command. :dd
|
|
|
|
{Invalid volume in set command} :dt
|
|
|
|
Volume must be > 0.0. :dd
|
|
|
|
{Invalid wiggle direction for fix wall/gran} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invoked angle equil angle on angle style none} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invoked angle single on angle style none} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invoked bond equil distance on bond style none} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invoked bond single on bond style none} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Invoked pair single on pair style none} :dt
|
|
|
|
A command (e.g. a dump) attempted to invoke the single() function on a
|
|
pair style none, which is illegal. You are probably attempting to
|
|
compute per-atom quantities with an undefined pair style. :dd
|
|
|
|
{Invoking coulombic in pair style lj/coul requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Invoking coulombic in pair style lj/long/dipole/long requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{KIM neighbor iterator exceeded range} :dt
|
|
|
|
This should not happen. It likely indicates a bug
|
|
in the KIM implementation of the interatomic potential
|
|
where it is requesting neighbors incorrectly. :dd
|
|
|
|
{KSpace accuracy must be > 0} :dt
|
|
|
|
The kspace accuracy designated in the input must be greater than zero. :dd
|
|
|
|
{KSpace accuracy too large to estimate G vector} :dt
|
|
|
|
Reduce the accuracy request or specify gwald explicitly
|
|
via the kspace_modify command. :dd
|
|
|
|
{KSpace accuracy too low} :dt
|
|
|
|
Requested accuracy must be less than 1.0. :dd
|
|
|
|
{KSpace solver requires a pair style} :dt
|
|
|
|
No pair style is defined. :dd
|
|
|
|
{KSpace style does not yet support triclinic geometries} :dt
|
|
|
|
The specified kspace style does not allow for non-orthogonal
|
|
simulation boxes. :dd
|
|
|
|
{KSpace style has not yet been set} :dt
|
|
|
|
Cannot use kspace_modify command until a kspace style is set. :dd
|
|
|
|
{KSpace style is incompatible with Pair style} :dt
|
|
|
|
Setting a kspace style requires that a pair style with a long-range
|
|
Coulombic or dispersion component be used. :dd
|
|
|
|
{Keyword %s in MEAM parameter file not recognized} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Kspace style does not support compute group/group} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Kspace style pppm/disp/tip4p requires newton on} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Kspace style pppm/tip4p requires newton on} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Kspace style requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Kspace style with selected options requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes.
|
|
Change the atom style or switch of the coulomb solver. :dd
|
|
|
|
{Kspace_modify eigtol must be smaller than one} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{LAMMPS unit_style lj not supported by KIM models} :dt
|
|
|
|
Self-explanatory. Check the input script or data file. :dd
|
|
|
|
{LJ6 off not supported in pair_style buck/long/coul/long} :dt
|
|
|
|
Self-exlanatory. :dd
|
|
|
|
{Label wasn't found in input script} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Lattice orient vectors are not orthogonal} :dt
|
|
|
|
The three specified lattice orientation vectors must be mutually
|
|
orthogonal. :dd
|
|
|
|
{Lattice orient vectors are not right-handed} :dt
|
|
|
|
The three specified lattice orientation vectors must create a
|
|
right-handed coordinate system such that a1 cross a2 = a3. :dd
|
|
|
|
{Lattice primitive vectors are collinear} :dt
|
|
|
|
The specified lattice primitive vectors do not for a unit cell with
|
|
non-zero volume. :dd
|
|
|
|
{Lattice settings are not compatible with 2d simulation} :dt
|
|
|
|
One or more of the specified lattice vectors has a non-zero z
|
|
component. :dd
|
|
|
|
{Lattice spacings are invalid} :dt
|
|
|
|
Each x,y,z spacing must be > 0. :dd
|
|
|
|
{Lattice style incompatible with simulation dimension} :dt
|
|
|
|
2d simulation can use sq, sq2, or hex lattice. 3d simulation can use
|
|
sc, bcc, or fcc lattice. :dd
|
|
|
|
{Log of zero/negative value in variable formula} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Lost atoms via balance: original %ld current %ld} :dt
|
|
|
|
This should not occur. Report the problem to the developers. :dd
|
|
|
|
{Lost atoms: original %ld current %ld} :dt
|
|
|
|
Lost atoms are checked for each time thermo output is done. See the
|
|
thermo_modify lost command for options. Lost atoms usually indicate
|
|
bad dynamics, e.g. atoms have been blown far out of the simulation
|
|
box, or moved futher than one processor's sub-domain away before
|
|
reneighboring. :dd
|
|
|
|
{MEAM library error %d} :dt
|
|
|
|
A call to the MEAM Fortran library returned an error. :dd
|
|
|
|
{MPI_LMP_BIGINT and bigint in lmptype.h are not compatible} :dt
|
|
|
|
The size of the MPI datatype does not match the size of a bigint. :dd
|
|
|
|
{MPI_LMP_TAGINT and tagint in lmptype.h are not compatible} :dt
|
|
|
|
The size of the MPI datatype does not match the size of a tagint. :dd
|
|
|
|
{MSM grid is too large} :dt
|
|
|
|
The global MSM grid is larger than OFFSET in one or more dimensions.
|
|
OFFSET is currently set to 16384. You likely need to decrease the
|
|
requested accuracy. :dd
|
|
|
|
{MSM order must be 4, 6, 8, or 10} :dt
|
|
|
|
This is a limitation of the MSM implementation in LAMMPS:
|
|
the MSM order can only be 4, 6, 8, or 10. :dd
|
|
|
|
{Mass command before simulation box is defined} :dt
|
|
|
|
The mass command cannot be used before a read_data, read_restart, or
|
|
create_box command. :dd
|
|
|
|
{Matrix factorization to split dispersion coefficients failed} :dt
|
|
|
|
This should not normally happen. Contact the developers. :dd
|
|
|
|
{Min_style command before simulation box is defined} :dt
|
|
|
|
The min_style command cannot be used before a read_data, read_restart,
|
|
or create_box command. :dd
|
|
|
|
{Minimization could not find thermo_pe compute} :dt
|
|
|
|
This compute is created by the thermo command. It must have been
|
|
explicitly deleted by a uncompute command. :dd
|
|
|
|
{Minimize command before simulation box is defined} :dt
|
|
|
|
The minimize command cannot be used before a read_data, read_restart,
|
|
or create_box command. :dd
|
|
|
|
{Mismatched brackets in variable} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Mismatched compute in variable formula} :dt
|
|
|
|
A compute is referenced incorrectly or a compute that produces per-atom
|
|
values is used in an equal-style variable formula. :dd
|
|
|
|
{Mismatched fix in variable formula} :dt
|
|
|
|
A fix is referenced incorrectly or a fix that produces per-atom
|
|
values is used in an equal-style variable formula. :dd
|
|
|
|
{Mismatched variable in variable formula} :dt
|
|
|
|
A variable is referenced incorrectly or an atom-style variable that
|
|
produces per-atom values is used in an equal-style variable
|
|
formula. :dd
|
|
|
|
{Modulo 0 in variable formula} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule count changed in compute atom/molecule} :dt
|
|
|
|
Number of molecules must remain constant over time. :dd
|
|
|
|
{Molecule count changed in compute com/molecule} :dt
|
|
|
|
Number of molecules must remain constant over time. :dd
|
|
|
|
{Molecule count changed in compute gyration/molecule} :dt
|
|
|
|
Number of molecules must remain constant over time. :dd
|
|
|
|
{Molecule count changed in compute inertia/molecule} :dt
|
|
|
|
Number of molecules must remain constant over time. :dd
|
|
|
|
{Molecule count changed in compute msd/molecule} :dt
|
|
|
|
Number of molecules must remain constant over time. :dd
|
|
|
|
{Molecule count changed in compute property/molecule} :dt
|
|
|
|
Number of molecules must remain constant over time. :dd
|
|
|
|
{Molecule file has angles but no nangles setting} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule file has bonds but no nbonds setting} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule file has dihedrals but no ndihedrals setting} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule file has impropers but no nimpropers setting} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule file has special flags but no bonds} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule file needs both Special Bond sections} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule file shake flags not before shake atoms} :dt
|
|
|
|
The order of the two sections is important. :dd
|
|
|
|
{Molecule file shake flags not before shake bonds} :dt
|
|
|
|
The order of the two sections is important. :dd
|
|
|
|
{Molecule file shake info is incomplete} :dt
|
|
|
|
All 3 SHAKE sections are needed. :dd
|
|
|
|
{Molecule file special list does not match special count} :dt
|
|
|
|
The number of values in an atom's special list does not match count. :dd
|
|
|
|
{Molecule file z center-of-mass must be 0.0 for 2d} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule file z coord must be 0.0 for 2d} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule template ID for atom_style template does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule template ID for create_atoms does not exist} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Molecule template ID for fix deposit does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule template ID for fix pour does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule template ID for fix rigid/small does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule template ID for fix shake does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule template ID must be alphanumeric or underscore characters} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule toplogy/atom exceeds system topology/atom} :dt
|
|
|
|
The number of bonds, angles, etc per-atom in the molecule exceeds the
|
|
system setting. See the create_box command for how to specify these
|
|
values. :dd
|
|
|
|
{Molecule topology type exceeds system topology type} :dt
|
|
|
|
The number of bond, angle, etc types in the molecule exceeds the
|
|
system setting. See the create_box command for how to specify these
|
|
values. :dd
|
|
|
|
{More than one fix deform} :dt
|
|
|
|
Only one fix deform can be defined at a time. :dd
|
|
|
|
{More than one fix freeze} :dt
|
|
|
|
Only one of these fixes can be defined, since the granular pair
|
|
potentials access it. :dd
|
|
|
|
{More than one fix shake} :dt
|
|
|
|
Only one fix shake can be defined. :dd
|
|
|
|
{Must define angle_style before Angle Coeffs} :dt
|
|
|
|
Must use an angle_style command before reading a data file that
|
|
defines Angle Coeffs. :dd
|
|
|
|
{Must define angle_style before BondAngle Coeffs} :dt
|
|
|
|
Must use an angle_style command before reading a data file that
|
|
defines Angle Coeffs. :dd
|
|
|
|
{Must define angle_style before BondBond Coeffs} :dt
|
|
|
|
Must use an angle_style command before reading a data file that
|
|
defines Angle Coeffs. :dd
|
|
|
|
{Must define bond_style before Bond Coeffs} :dt
|
|
|
|
Must use a bond_style command before reading a data file that
|
|
defines Bond Coeffs. :dd
|
|
|
|
{Must define dihedral_style before AngleAngleTorsion Coeffs} :dt
|
|
|
|
Must use a dihedral_style command before reading a data file that
|
|
defines AngleAngleTorsion Coeffs. :dd
|
|
|
|
{Must define dihedral_style before AngleTorsion Coeffs} :dt
|
|
|
|
Must use a dihedral_style command before reading a data file that
|
|
defines AngleTorsion Coeffs. :dd
|
|
|
|
{Must define dihedral_style before BondBond13 Coeffs} :dt
|
|
|
|
Must use a dihedral_style command before reading a data file that
|
|
defines BondBond13 Coeffs. :dd
|
|
|
|
{Must define dihedral_style before Dihedral Coeffs} :dt
|
|
|
|
Must use a dihedral_style command before reading a data file that
|
|
defines Dihedral Coeffs. :dd
|
|
|
|
{Must define dihedral_style before EndBondTorsion Coeffs} :dt
|
|
|
|
Must use a dihedral_style command before reading a data file that
|
|
defines EndBondTorsion Coeffs. :dd
|
|
|
|
{Must define dihedral_style before MiddleBondTorsion Coeffs} :dt
|
|
|
|
Must use a dihedral_style command before reading a data file that
|
|
defines MiddleBondTorsion Coeffs. :dd
|
|
|
|
{Must define improper_style before AngleAngle Coeffs} :dt
|
|
|
|
Must use an improper_style command before reading a data file that
|
|
defines AngleAngle Coeffs. :dd
|
|
|
|
{Must define improper_style before Improper Coeffs} :dt
|
|
|
|
Must use an improper_style command before reading a data file that
|
|
defines Improper Coeffs. :dd
|
|
|
|
{Must define pair_style before Pair Coeffs} :dt
|
|
|
|
Must use a pair_style command before reading a data file that defines
|
|
Pair Coeffs. :dd
|
|
|
|
{Must define pair_style before PairIJ Coeffs} :dt
|
|
|
|
Must use a pair_style command before reading a data file that defines
|
|
PairIJ Coeffs. :dd
|
|
|
|
{Must have more than one processor partition to temper} :dt
|
|
|
|
Cannot use the temper command with only one processor partition. Use
|
|
the -partition command-line option. :dd
|
|
|
|
{Must read Atoms before Angles} :dt
|
|
|
|
The Atoms section of a data file must come before an Angles section. :dd
|
|
|
|
{Must read Atoms before Bodies} :dt
|
|
|
|
The Atoms section of a data file must come before a Bodies section. :dd
|
|
|
|
{Must read Atoms before Bonds} :dt
|
|
|
|
The Atoms section of a data file must come before a Bonds section. :dd
|
|
|
|
{Must read Atoms before Dihedrals} :dt
|
|
|
|
The Atoms section of a data file must come before a Dihedrals section. :dd
|
|
|
|
{Must read Atoms before Ellipsoids} :dt
|
|
|
|
The Atoms section of a data file must come before a Ellipsoids
|
|
section. :dd
|
|
|
|
{Must read Atoms before Impropers} :dt
|
|
|
|
The Atoms section of a data file must come before an Impropers
|
|
section. :dd
|
|
|
|
{Must read Atoms before Lines} :dt
|
|
|
|
The Atoms section of a data file must come before a Lines section. :dd
|
|
|
|
{Must read Atoms before Triangles} :dt
|
|
|
|
The Atoms section of a data file must come before a Triangles section. :dd
|
|
|
|
{Must read Atoms before Velocities} :dt
|
|
|
|
The Atoms section of a data file must come before a Velocities
|
|
section. :dd
|
|
|
|
{Must set both respa inner and outer} :dt
|
|
|
|
Cannot use just the inner or outer option with respa without using the
|
|
other. :dd
|
|
|
|
{Must shrink-wrap piston boundary} :dt
|
|
|
|
The boundary style of the face where the piston is applied must be of
|
|
type s (shrink-wrapped). :dd
|
|
|
|
{Must specify a region in fix deposit} :dt
|
|
|
|
The region keyword must be specified with this fix. :dd
|
|
|
|
{Must specify a region in fix pour} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Must use -in switch with multiple partitions} :dt
|
|
|
|
A multi-partition simulation cannot read the input script from stdin.
|
|
The -in command-line option must be used to specify a file. :dd
|
|
|
|
{Must use a block or cylinder region with fix pour} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Must use a block region with fix pour for 2d simulations} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Must use a bond style with TIP4P potential} :dt
|
|
|
|
TIP4P potentials assume bond lengths in water are constrained
|
|
by a fix shake command. :dd
|
|
|
|
{Must use a molecular atom style with fix poems molecule} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Must use a z-axis cylinder region with fix pour} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Must use an angle style with TIP4P potential} :dt
|
|
|
|
TIP4P potentials assume angles in water are constrained by a fix shake
|
|
command. :dd
|
|
|
|
{Must use atom style with molecule IDs with fix bond/swap} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Must use pair_style comb or comb3 with fix qeq/comb} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Must use variable energy with fix addforce} :dt
|
|
|
|
Must define an energy vartiable when applyting a dynamic
|
|
force during minimization. :dd
|
|
|
|
{Must use variable energy with fix efield} :dt
|
|
|
|
You must define an energy when performing a minimization with a
|
|
variable E-field. :dd
|
|
|
|
{NEB command before simulation box is defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{NEB requires damped dynamics minimizer} :dt
|
|
|
|
Use a different minimization style. :dd
|
|
|
|
{NEB requires use of fix neb} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{NL ramp in wall/piston only implemented in zlo for now} :dt
|
|
|
|
The ramp keyword can only be used for piston applied to face zlo. :dd
|
|
|
|
{Needed bonus data not in data file} :dt
|
|
|
|
Some atom styles require bonus data. See the read_data doc page for
|
|
details. :dd
|
|
|
|
{Needed molecular topology not in data file} :dt
|
|
|
|
The header of the data file indicated bonds, angles, etc would be
|
|
included, but they are not present. :dd
|
|
|
|
{Neigh_modify exclude molecule requires atom attribute molecule} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Neigh_modify include group != atom_modify first group} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Neighbor delay must be 0 or multiple of every setting} :dt
|
|
|
|
The delay and every parameters set via the neigh_modify command are
|
|
inconsistent. If the delay setting is non-zero, then it must be a
|
|
multiple of the every setting. :dd
|
|
|
|
{Neighbor include group not allowed with ghost neighbors} :dt
|
|
|
|
This is a current restriction within LAMMPS. :dd
|
|
|
|
{Neighbor list overflow, boost neigh_modify one} :dt
|
|
|
|
There are too many neighbors of a single atom. Use the neigh_modify
|
|
command to increase the max number of neighbors allowed for one atom.
|
|
You may also want to boost the page size. :dd
|
|
|
|
{Neighbor multi not yet enabled for ghost neighbors} :dt
|
|
|
|
This is a current restriction within LAMMPS. :dd
|
|
|
|
{Neighbor multi not yet enabled for granular} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Neighbor multi not yet enabled for rRESPA} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Neighbor page size must be >= 10x the one atom setting} :dt
|
|
|
|
This is required to prevent wasting too much memory. :dd
|
|
|
|
{New atom IDs exceed maximum allowed ID} :dt
|
|
|
|
See the setting for tagint in the src/lmptype.h file. :dd
|
|
|
|
{New bond exceeded bonds per atom in fix bond/create} :dt
|
|
|
|
See the read_data command for info on setting the "extra bond per
|
|
atom" header value to allow for additional bonds to be formed. :dd
|
|
|
|
{New bond exceeded special list size in fix bond/create} :dt
|
|
|
|
See the special_bonds extra command for info on how to leave space in
|
|
the special bonds list to allow for additional bonds to be formed. :dd
|
|
|
|
{Newton bond change after simulation box is defined} :dt
|
|
|
|
The newton command cannot be used to change the newton bond value
|
|
after a read_data, read_restart, or create_box command. :dd
|
|
|
|
{Next command must list all universe and uloop variables} :dt
|
|
|
|
This is to insure they stay in sync. :dd
|
|
|
|
{No Kspace style defined for compute group/group} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No OpenMP support compiled in} :dt
|
|
|
|
An OpenMP flag is set, but LAMMPS was not built with
|
|
OpenMP support. :dd
|
|
|
|
{No angle style is defined for compute angle/local} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No angles allowed with this atom style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No atom count in molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No atoms in data file} :dt
|
|
|
|
The header of the data file indicated that atoms would be included,
|
|
but they are not present. :dd
|
|
|
|
{No basis atoms in lattice} :dt
|
|
|
|
Basis atoms must be defined for lattice style user. :dd
|
|
|
|
{No bodies allowed with this atom style} :dt
|
|
|
|
Self-explanatory. Check data file. :dd
|
|
|
|
{No bond style is defined for compute bond/local} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No bonds allowed with this atom style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No box information in dump. You have to use 'box no'} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No dihedral style is defined for compute dihedral/local} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No dihedrals allowed with this atom style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No dump custom arguments specified} :dt
|
|
|
|
The dump custom command requires that atom quantities be specified to
|
|
output to dump file. :dd
|
|
|
|
{No dump local arguments specified} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No ellipsoids allowed with this atom style} :dt
|
|
|
|
Self-explanatory. Check data file. :dd
|
|
|
|
{No fix gravity defined for fix pour} :dt
|
|
|
|
Gravity is required to use fix pour. :dd
|
|
|
|
{No improper style is defined for compute improper/local} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No impropers allowed with this atom style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No lines allowed with this atom style} :dt
|
|
|
|
Self-explanatory. Check data file. :dd
|
|
|
|
{No matching element in ADP potential file} :dt
|
|
|
|
The ADP potential file does not contain elements that match the
|
|
requested elements. :dd
|
|
|
|
{No matching element in EAM potential file} :dt
|
|
|
|
The EAM potential file does not contain elements that match the
|
|
requested elements. :dd
|
|
|
|
{No molecule topology allowed with atom style template} :dt
|
|
|
|
The data file cannot specify the number of bonds, angles, etc,
|
|
because this info if inferred from the molecule templates. :dd
|
|
|
|
{No overlap of box and region for create_atoms} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No pair hbond/dreiding coefficients set} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No pair style defined for compute group/group} :dt
|
|
|
|
Cannot calculate group interactions without a pair style defined. :dd
|
|
|
|
{No pair style is defined for compute pair/local} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No pair style is defined for compute property/local} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{No rigid bodies defined} :dt
|
|
|
|
The fix specification did not end up defining any rigid bodies. :dd
|
|
|
|
{No triangles allowed with this atom style} :dt
|
|
|
|
Self-explanatory. Check data file. :dd
|
|
|
|
{Non digit character between brackets in variable} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Non integer # of swaps in temper command} :dt
|
|
|
|
Swap frequency in temper command must evenly divide the total # of
|
|
timesteps. :dd
|
|
|
|
{Not all atom IDs are 0} :dt
|
|
|
|
Either all atoms IDs must be zero or none of them. :dd
|
|
|
|
{Nprocs not a multiple of N for -reorder} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Numeric index is out of bounds} :dt
|
|
|
|
A command with an argument that specifies an integer or range of
|
|
integers is using a value that is less than 1 or greater than the
|
|
maximum allowed limit. :dd
|
|
|
|
{One or more atoms belong to multiple rigid bodies} :dt
|
|
|
|
Two or more rigid bodies defined by the fix rigid command cannot
|
|
contain the same atom. :dd
|
|
|
|
{One or zero atoms in rigid body} :dt
|
|
|
|
Any rigid body defined by the fix rigid command must contain 2 or more
|
|
atoms. :dd
|
|
|
|
{Only one cut-off allowed when requesting all long} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Only one cutoff allowed when requesting all long} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Only zhi currently implemented for fix append/atoms} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Out of range atoms - cannot compute MSM} :dt
|
|
|
|
One or more atoms are attempting to map their charge to a MSM grid point
|
|
that is not owned by a processor. This is likely for one of two
|
|
reasons, both of them bad. First, it may mean that an atom near the
|
|
boundary of a processor's sub-domain has moved more than 1/2 the
|
|
"neighbor skin distance"_neighbor.html without neighbor lists being
|
|
rebuilt and atoms being migrated to new processors. This also means
|
|
you may be missing pairwise interactions that need to be computed.
|
|
The solution is to change the re-neighboring criteria via the
|
|
"neigh_modify"_neigh_modify command. The safest settings are "delay 0
|
|
every 1 check yes". Second, it may mean that an atom has moved far
|
|
outside a processor's sub-domain or even the entire simulation box.
|
|
This indicates bad physics, e.g. due to highly overlapping atoms, too
|
|
large a timestep, etc. :dd
|
|
|
|
{Out of range atoms - cannot compute PPPM} :dt
|
|
|
|
One or more atoms are attempting to map their charge to a PPPM grid
|
|
point that is not owned by a processor. This is likely for one of two
|
|
reasons, both of them bad. First, it may mean that an atom near the
|
|
boundary of a processor's sub-domain has moved more than 1/2 the
|
|
"neighbor skin distance"_neighbor.html without neighbor lists being
|
|
rebuilt and atoms being migrated to new processors. This also means
|
|
you may be missing pairwise interactions that need to be computed.
|
|
The solution is to change the re-neighboring criteria via the
|
|
"neigh_modify"_neigh_modify command. The safest settings are "delay 0
|
|
every 1 check yes". Second, it may mean that an atom has moved far
|
|
outside a processor's sub-domain or even the entire simulation box.
|
|
This indicates bad physics, e.g. due to highly overlapping atoms, too
|
|
large a timestep, etc. :dd
|
|
|
|
{Out of range atoms - cannot compute PPPMDisp} :dt
|
|
|
|
One or more atoms are attempting to map their charge to a PPPM grid
|
|
point that is not owned by a processor. This is likely for one of two
|
|
reasons, both of them bad. First, it may mean that an atom near the
|
|
boundary of a processor's sub-domain has moved more than 1/2 the
|
|
"neighbor skin distance"_neighbor.html without neighbor lists being
|
|
rebuilt and atoms being migrated to new processors. This also means
|
|
you may be missing pairwise interactions that need to be computed.
|
|
The solution is to change the re-neighboring criteria via the
|
|
"neigh_modify"_neigh_modify command. The safest settings are "delay 0
|
|
every 1 check yes". Second, it may mean that an atom has moved far
|
|
outside a processor's sub-domain or even the entire simulation box.
|
|
This indicates bad physics, e.g. due to highly overlapping atoms, too
|
|
large a timestep, etc. :dd
|
|
|
|
{Overlapping large/large in pair colloid} :dt
|
|
|
|
This potential is infinite when there is an overlap. :dd
|
|
|
|
{Overlapping small/large in pair colloid} :dt
|
|
|
|
This potential is infinite when there is an overlap. :dd
|
|
|
|
{POEMS fix must come before NPT/NPH fix} :dt
|
|
|
|
NPT/NPH fix must be defined in input script after all poems fixes,
|
|
else the fix contribution to the pressure virial is incorrect. :dd
|
|
|
|
{PPPM grid is too large} :dt
|
|
|
|
The global PPPM grid is larger than OFFSET in one or more dimensions.
|
|
OFFSET is currently set to 4096. You likely need to decrease the
|
|
requested accuracy. :dd
|
|
|
|
{PPPM grid stencil extends beyond nearest neighbor processor} :dt
|
|
|
|
This is not allowed if the kspace_modify overlap setting is no. :dd
|
|
|
|
{PPPM order < minimum allowed order} :dt
|
|
|
|
The default minimum order is 2. This can be reset by the
|
|
kspace_modify minorder command. :dd
|
|
|
|
{PPPM order cannot be < 2 or > than %d} :dt
|
|
|
|
This is a limitation of the PPPM implementation in LAMMPS. :dd
|
|
|
|
{PPPM order has been reduced to 0} :dt
|
|
|
|
The auto-adjust of the order failed. You will need to
|
|
set the grid size and order directly via kspace_modify. :dd
|
|
|
|
{PPPMDisp Coulomb grid is too large} :dt
|
|
|
|
The global PPPM grid is larger than OFFSET in one or more dimensions.
|
|
OFFSET is currently set to 4096. You likely need to decrease the
|
|
requested accuracy. :dd
|
|
|
|
{PPPMDisp Dispersion grid is too large} :dt
|
|
|
|
The global PPPM grid is larger than OFFSET in one or more dimensions.
|
|
OFFSET is currently set to 4096. You likely need to decrease the
|
|
requested accuracy. :dd
|
|
|
|
{PPPMDisp coulomb order cannot be greater than %d} :dt
|
|
|
|
This is a limitation of the PPPM implementation in LAMMPS. :dd
|
|
|
|
{PPPMDisp used but no parameters set, for further information please see the pppm/disp documentation} :dt
|
|
|
|
An efficient and accurate usage of the pppm/disp requires settings via the kspace_modify command. Please see the pppm/disp documentation for further instructions. :dd
|
|
|
|
{PRD command before simulation box is defined} :dt
|
|
|
|
The prd command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{PRD nsteps must be multiple of t_event} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{PRD t_corr must be multiple of t_event} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Package command after simulation box is defined} :dt
|
|
|
|
The package command cannot be used afer a read_data, read_restart, or
|
|
create_box command. :dd
|
|
|
|
{Package cuda command without USER-CUDA installed} :dt
|
|
|
|
The USER-CUDA package must be installed via "make yes-user-cuda"
|
|
before LAMMPS is built. :dd
|
|
|
|
{Pair body requires atom style body} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair body requires body style nparticle} :dt
|
|
|
|
This pair style is specific to the nparticle body style. :dd
|
|
|
|
{Pair brownian requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair brownian requires extended particles} :dt
|
|
|
|
One of the particles has radius 0.0. :dd
|
|
|
|
{Pair brownian requires monodisperse particles} :dt
|
|
|
|
All particles must be the same finite size. :dd
|
|
|
|
{Pair brownian/poly requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair brownian/poly requires extended particles} :dt
|
|
|
|
One of the particles has radius 0.0. :dd
|
|
|
|
{Pair brownian/poly requires newton pair off} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair coeff for hybrid has invalid style} :dt
|
|
|
|
Style in pair coeff must have been listed in pair_style command. :dd
|
|
|
|
{Pair coul/wolf requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair cutoff < Respa interior cutoff} :dt
|
|
|
|
One or more pairwise cutoffs are too short to use with the specified
|
|
rRESPA cutoffs. :dd
|
|
|
|
{Pair dipole/cut requires atom attributes q, mu, torque} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair dipole/cut/gpu requires atom attributes q, mu, torque} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair dipole/long requires atom attributes q, mu, torque} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair distance < table inner cutoff} :dt
|
|
|
|
Two atoms are closer together than the pairwise table allows. :dd
|
|
|
|
{Pair distance > table outer cutoff} :dt
|
|
|
|
Two atoms are further apart than the pairwise table allows. :dd
|
|
|
|
{Pair dpd requires ghost atoms store velocity} :dt
|
|
|
|
Use the comm_modify vel yes command to enable this. :dd
|
|
|
|
{Pair gayberne epsilon a,b,c coeffs are not all set} :dt
|
|
|
|
Each atom type involved in pair_style gayberne must
|
|
have these 3 coefficients set at least once. :dd
|
|
|
|
{Pair gayberne requires atom style ellipsoid} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair gayberne requires atoms with same type have same shape} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair gayberne/gpu requires atom style ellipsoid} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair gayberne/gpu requires atoms with same type have same shape} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair granular requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair granular requires ghost atoms store velocity} :dt
|
|
|
|
Use the comm_modify vel yes command to enable this. :dd
|
|
|
|
{Pair granular with shear history requires newton pair off} :dt
|
|
|
|
This is a current restriction of the implementation of pair
|
|
granular styles with history. :dd
|
|
|
|
{Pair hybrid sub-style does not support single call} :dt
|
|
|
|
You are attempting to invoke a single() call on a pair style
|
|
that doesn't support it. :dd
|
|
|
|
{Pair hybrid sub-style is not used} :dt
|
|
|
|
No pair_coeff command used a sub-style specified in the pair_style
|
|
command. :dd
|
|
|
|
{Pair inner cutoff < Respa interior cutoff} :dt
|
|
|
|
One or more pairwise cutoffs are too short to use with the specified
|
|
rRESPA cutoffs. :dd
|
|
|
|
{Pair inner cutoff >= Pair outer cutoff} :dt
|
|
|
|
The specified cutoffs for the pair style are inconsistent. :dd
|
|
|
|
{Pair line/lj requires atom style line} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair lj/long/dipole/long requires atom attributes mu, torque} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair lubricate requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair lubricate requires ghost atoms store velocity} :dt
|
|
|
|
Use the comm_modify vel yes command to enable this. :dd
|
|
|
|
{Pair lubricate requires monodisperse particles} :dt
|
|
|
|
All particles must be the same finite size. :dd
|
|
|
|
{Pair lubricate/poly requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair lubricate/poly requires extended particles} :dt
|
|
|
|
One of the particles has radius 0.0. :dd
|
|
|
|
{Pair lubricate/poly requires ghost atoms store velocity} :dt
|
|
|
|
Use the comm_modify vel yes command to enable this. :dd
|
|
|
|
{Pair lubricate/poly requires newton pair off} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair lubricateU requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair lubricateU requires ghost atoms store velocity} :dt
|
|
|
|
Use the comm_modify vel yes command to enable this. :dd
|
|
|
|
{Pair lubricateU requires monodisperse particles} :dt
|
|
|
|
All particles must be the same finite size. :dd
|
|
|
|
{Pair lubricateU/poly requires ghost atoms store velocity} :dt
|
|
|
|
Use the comm_modify vel yes command to enable this. :dd
|
|
|
|
{Pair lubricateU/poly requires newton pair off} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair peri lattice is not identical in x, y, and z} :dt
|
|
|
|
The lattice defined by the lattice command must be cubic. :dd
|
|
|
|
{Pair peri requires a lattice be defined} :dt
|
|
|
|
Use the lattice command for this purpose. :dd
|
|
|
|
{Pair peri requires an atom map, see atom_modify} :dt
|
|
|
|
Even for atomic systems, an atom map is required to find Peridynamic
|
|
bonds. Use the atom_modify command to define one. :dd
|
|
|
|
{Pair resquared epsilon a,b,c coeffs are not all set} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair resquared epsilon and sigma coeffs are not all set} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair resquared requires atom style ellipsoid} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair resquared requires atoms with same type have same shape} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair resquared/gpu requires atom style ellipsoid} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair resquared/gpu requires atoms with same type have same shape} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair style AIREBO requires atom IDs} :dt
|
|
|
|
This is a requirement to use the AIREBO potential. :dd
|
|
|
|
{Pair style AIREBO requires newton pair on} :dt
|
|
|
|
See the newton command. This is a restriction to use the AIREBO
|
|
potential. :dd
|
|
|
|
{Pair style BOP requires atom IDs} :dt
|
|
|
|
This is a requirement to use the BOP potential. :dd
|
|
|
|
{Pair style BOP requires newton pair on} :dt
|
|
|
|
See the newton command. This is a restriction to use the BOP
|
|
potential. :dd
|
|
|
|
{Pair style COMB requires atom IDs} :dt
|
|
|
|
This is a requirement to use the AIREBO potential. :dd
|
|
|
|
{Pair style COMB requires atom attribute q} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair style COMB requires newton pair on} :dt
|
|
|
|
See the newton command. This is a restriction to use the COMB
|
|
potential. :dd
|
|
|
|
{Pair style COMB3 requires atom IDs} :dt
|
|
|
|
This is a requirement to use this potential. :dd
|
|
|
|
{Pair style COMB3 requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style COMB3 requires newton pair on} :dt
|
|
|
|
See the newton command. This is a restriction to use the COMB3
|
|
potential. :dd
|
|
|
|
{Pair style LCBOP requires atom IDs} :dt
|
|
|
|
This is a requirement to use the LCBOP potential. :dd
|
|
|
|
{Pair style LCBOP requires newton pair on} :dt
|
|
|
|
See the newton command. This is a restriction to use the Tersoff
|
|
potential. :dd
|
|
|
|
{Pair style MEAM requires newton pair on} :dt
|
|
|
|
See the newton command. This is a restriction to use the MEAM
|
|
potential. :dd
|
|
|
|
{Pair style Stillinger-Weber requires atom IDs} :dt
|
|
|
|
This is a requirement to use the SW potential. :dd
|
|
|
|
{Pair style Stillinger-Weber requires newton pair on} :dt
|
|
|
|
See the newton command. This is a restriction to use the SW
|
|
potential. :dd
|
|
|
|
{Pair style Tersoff requires atom IDs} :dt
|
|
|
|
This is a requirement to use the Tersoff potential. :dd
|
|
|
|
{Pair style Tersoff requires newton pair on} :dt
|
|
|
|
See the newton command. This is a restriction to use the Tersoff
|
|
potential. :dd
|
|
|
|
{Pair style bop requires comm ghost cutoff at least 3x larger than %g} :dt
|
|
|
|
Use the communicate ghost command to set this. See the pair bop
|
|
doc page for more details. :dd
|
|
|
|
{Pair style born/coul/long requires atom attribute q} :dt
|
|
|
|
An atom style that defines this attribute must be used. :dd
|
|
|
|
{Pair style born/coul/long/gpu requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style born/coul/wolf requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style buck/coul/cut requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style buck/coul/long requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair style buck/coul/long/gpu requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style buck/long/coul/long requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style coul/cut requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair style coul/dsf requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style coul/dsf/gpu requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style coul/long/gpu requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair style does not have extra field requested by compute pair/local} :dt
|
|
|
|
The pair style does not support the pN value requested by the compute
|
|
pair/local command. :dd
|
|
|
|
{Pair style does not support bond_style quartic} :dt
|
|
|
|
The pair style does not have a single() function, so it can
|
|
not be invoked by bond_style quartic. :dd
|
|
|
|
{Pair style does not support compute group/group} :dt
|
|
|
|
The pair_style does not have a single() function, so it cannot be
|
|
invokded by the compute group/group command. :dd
|
|
|
|
{Pair style does not support compute pair/local} :dt
|
|
|
|
The pair style does not have a single() function, so it can
|
|
not be invoked by compute pair/local. :dd
|
|
|
|
{Pair style does not support compute property/local} :dt
|
|
|
|
The pair style does not have a single() function, so it can
|
|
not be invoked by fix bond/swap. :dd
|
|
|
|
{Pair style does not support fix bond/swap} :dt
|
|
|
|
The pair style does not have a single() function, so it can
|
|
not be invoked by fix bond/swap. :dd
|
|
|
|
{Pair style does not support pair_write} :dt
|
|
|
|
The pair style does not have a single() function, so it can
|
|
not be invoked by pair write. :dd
|
|
|
|
{Pair style does not support rRESPA inner/middle/outer} :dt
|
|
|
|
You are attempting to use rRESPA options with a pair style that
|
|
does not support them. :dd
|
|
|
|
{Pair style granular with history requires atoms have IDs} :dt
|
|
|
|
Atoms in the simulation do not have IDs, so history effects
|
|
cannot be tracked by the granular pair potential. :dd
|
|
|
|
{Pair style hbond/dreiding requires an atom map, see atom_modify} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair style hbond/dreiding requires atom IDs} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair style hbond/dreiding requires molecular system} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair style hbond/dreiding requires newton pair on} :dt
|
|
|
|
See the newton command for details. :dd
|
|
|
|
{Pair style hybrid cannot have hybrid as an argument} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair style hybrid cannot have none as an argument} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair style is incompatible with KSpace style} :dt
|
|
|
|
If a pair style with a long-range Coulombic component is selected,
|
|
then a kspace style must also be used. :dd
|
|
|
|
{Pair style lj/charmm/coul/charmm requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair style lj/charmm/coul/long requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair style lj/charmm/coul/long/gpu requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/class2/coul/cut requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/class2/coul/long requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/class2/coul/long/gpu requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/cut/coul/cut requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/cut/coul/cut/gpu requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/cut/coul/debye/gpu requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/cut/coul/dsf requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair style lj/cut/coul/dsf/gpu requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/cut/coul/long requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/cut/coul/long/gpu requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/cut/coul/msm requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/cut/tip4p/cut requires atom IDs} :dt
|
|
|
|
This is a requirement to use this potential. :dd
|
|
|
|
{Pair style lj/cut/tip4p/cut requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style lj/cut/tip4p/cut requires newton pair on} :dt
|
|
|
|
See the newton command. This is a restriction to use this
|
|
potential. :dd
|
|
|
|
{Pair style lj/cut/tip4p/long requires atom IDs} :dt
|
|
|
|
There are no atom IDs defined in the system and the TIP4P potential
|
|
requires them to find O,H atoms with a water molecule. :dd
|
|
|
|
{Pair style lj/cut/tip4p/long requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair style lj/cut/tip4p/long requires newton pair on} :dt
|
|
|
|
This is because the computation of constraint forces within a water
|
|
molecule adds forces to atoms owned by other processors. :dd
|
|
|
|
{Pair style lj/gromacs/coul/gromacs requires atom attribute q} :dt
|
|
|
|
An atom_style with this attribute is needed. :dd
|
|
|
|
{Pair style lj/long/dipole/long does not currently support respa} :dt
|
|
|
|
This feature is not yet supported. :dd
|
|
|
|
{Pair style lj/long/tip4p/long requires atom IDs} :dt
|
|
|
|
There are no atom IDs defined in the system and the TIP4P potential
|
|
requires them to find O,H atoms with a water molecule. :dd
|
|
|
|
{Pair style lj/long/tip4p/long requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair style lj/long/tip4p/long requires newton pair on} :dt
|
|
|
|
This is because the computation of constraint forces within a water
|
|
molecule adds forces to atoms owned by other processors. :dd
|
|
|
|
{Pair style nb3b/harmonic requires atom IDs} :dt
|
|
|
|
This is a requirement to use this potential. :dd
|
|
|
|
{Pair style nb3b/harmonic requires newton pair on} :dt
|
|
|
|
See the newton command. This is a restriction to use this potential. :dd
|
|
|
|
{Pair style nm/cut/coul/cut requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style nm/cut/coul/long requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style peri requires atom style peri} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair style reax requires atom IDs} :dt
|
|
|
|
This is a requirement to use the ReaxFF potential. :dd
|
|
|
|
{Pair style reax requires newton pair on} :dt
|
|
|
|
This is a requirement to use the ReaxFF potential. :dd
|
|
|
|
{Pair style requires a KSpace style} :dt
|
|
|
|
No kspace style is defined. :dd
|
|
|
|
{Pair style requres a KSpace style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair style sw/gpu requires atom IDs} :dt
|
|
|
|
This is a requirement to use this potential. :dd
|
|
|
|
{Pair style sw/gpu requires newton pair off} :dt
|
|
|
|
See the newton command. This is a restriction to use this potential. :dd
|
|
|
|
{Pair style tip4p/cut requires atom IDs} :dt
|
|
|
|
This is a requirement to use this potential. :dd
|
|
|
|
{Pair style tip4p/cut requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have this attribute. :dd
|
|
|
|
{Pair style tip4p/cut requires newton pair on} :dt
|
|
|
|
See the newton command. This is a restriction to use this potential. :dd
|
|
|
|
{Pair style tip4p/long requires atom IDs} :dt
|
|
|
|
There are no atom IDs defined in the system and the TIP4P potential
|
|
requires them to find O,H atoms with a water molecule. :dd
|
|
|
|
{Pair style tip4p/long requires atom attribute q} :dt
|
|
|
|
The atom style defined does not have these attributes. :dd
|
|
|
|
{Pair style tip4p/long requires newton pair on} :dt
|
|
|
|
This is because the computation of constraint forces within a water
|
|
molecule adds forces to atoms owned by other processors. :dd
|
|
|
|
{Pair table cutoffs must all be equal to use with KSpace} :dt
|
|
|
|
When using pair style table with a long-range KSpace solver, the
|
|
cutoffs for all atom type pairs must all be the same, since the
|
|
long-range solver starts at that cutoff. :dd
|
|
|
|
{Pair table parameters did not set N} :dt
|
|
|
|
List of pair table parameters must include N setting. :dd
|
|
|
|
{Pair tersoff/zbl requires metal or real units} :dt
|
|
|
|
This is a current restriction of this pair potential. :dd
|
|
|
|
{Pair tri/lj requires atom style tri} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair yukawa/colloid requires atom style sphere} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Pair yukawa/colloid requires atoms with same type have same radius} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Pair yukawa/colloid/gpu requires atom style sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{PairKIM only works with 3D problems} :dt
|
|
|
|
This is a current limitation. :dd
|
|
|
|
{Pair_coeff command before pair_style is defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair_coeff command before simulation box is defined} :dt
|
|
|
|
The pair_coeff command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Pair_modify command before pair_style is defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair_write command before pair_style is defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Particle on or inside fix wall surface} :dt
|
|
|
|
Particles must be "exterior" to the wall in order for energy/force to
|
|
be calculated. :dd
|
|
|
|
{Particle on or inside surface of region used in fix wall/region} :dt
|
|
|
|
Particles must be "exterior" to the region surface in order for
|
|
energy/force to be calculated. :dd
|
|
|
|
{Per-atom compute in equal-style variable formula} :dt
|
|
|
|
Equal-style variables cannot use per-atom quantities. :dd
|
|
|
|
{Per-atom energy was not tallied on needed timestep} :dt
|
|
|
|
You are using a thermo keyword that requires potentials to
|
|
have tallied energy, but they didn't on this timestep. See the
|
|
variable doc page for ideas on how to make this work. :dd
|
|
|
|
{Per-atom fix in equal-style variable formula} :dt
|
|
|
|
Equal-style variables cannot use per-atom quantities. :dd
|
|
|
|
{Per-atom virial was not tallied on needed timestep} :dt
|
|
|
|
You are using a thermo keyword that requires potentials to have
|
|
tallied the virial, but they didn't on this timestep. See the
|
|
variable doc page for ideas on how to make this work. :dd
|
|
|
|
{Per-processor system is too big} :dt
|
|
|
|
The number of owned atoms plus ghost atoms on a single
|
|
processor must fit in 32-bit integer. :dd
|
|
|
|
{Potential energy ID for fix neb does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Potential energy ID for fix nvt/nph/npt does not exist} :dt
|
|
|
|
A compute for potential energy must be defined. :dd
|
|
|
|
{Potential file has duplicate entry} :dt
|
|
|
|
The potential file for a SW or Tersoff potential has more than
|
|
one entry for the same 3 ordered elements. :dd
|
|
|
|
{Potential file is missing an entry} :dt
|
|
|
|
The potential file for a SW or Tersoff potential does not have a
|
|
needed entry. :dd
|
|
|
|
{Power by 0 in variable formula} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure ID for fix box/relax does not exist} :dt
|
|
|
|
The compute ID needed to compute pressure for the fix does not
|
|
exist. :dd
|
|
|
|
{Pressure ID for fix modify does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure ID for fix npt/nph does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure ID for fix press/berendsen does not exist} :dt
|
|
|
|
The compute ID needed to compute pressure for the fix does not
|
|
exist. :dd
|
|
|
|
{Pressure ID for fix rigid npt/nph does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure ID for thermo does not exist} :dt
|
|
|
|
The compute ID needed to compute pressure for thermodynamics does not
|
|
exist. :dd
|
|
|
|
{Pressure control can not be used with fix nvt} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure control can not be used with fix nvt/asphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure control can not be used with fix nvt/sllod} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure control can not be used with fix nvt/sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure control must be used with fix nph} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure control must be used with fix nph/asphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure control must be used with fix nph/sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure control must be used with fix nphug} :dt
|
|
|
|
A pressure control keyword (iso, aniso, tri, x, y, or z) must be
|
|
provided. :dd
|
|
|
|
{Pressure control must be used with fix npt} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure control must be used with fix npt/asphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pressure control must be used with fix npt/sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Processor count in z must be 1 for 2d simulation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Processor partitions are inconsistent} :dt
|
|
|
|
The total number of processors in all partitions must match the number
|
|
of processors LAMMPS is running on. :dd
|
|
|
|
{Processors command after simulation box is defined} :dt
|
|
|
|
The processors command cannot be used after a read_data, read_restart,
|
|
or create_box command. :dd
|
|
|
|
{Processors custom grid file is inconsistent} :dt
|
|
|
|
The vales in the custom file are not consistent with the number of
|
|
processors you are running on or the Px,Py,Pz settings of the
|
|
processors command. Or there was not a setting for every processor. :dd
|
|
|
|
{Processors grid numa and map style are incompatible} :dt
|
|
|
|
Using numa for gstyle in the processors command requires using
|
|
cart for the map option. :dd
|
|
|
|
{Processors part option and grid style are incompatible} :dt
|
|
|
|
Cannot use gstyle numa or custom with the part option. :dd
|
|
|
|
{Processors twogrid requires proc count be a multiple of core count} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pstart and Pstop must have the same value} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{R0 < 0 for fix spring command} :dt
|
|
|
|
Equilibrium spring length is invalid. :dd
|
|
|
|
{Read dump of atom property that isn't allocated} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Read restart MPI-IO input not allowed with % in filename} :dt
|
|
|
|
This is because a % signifies one file per processor and MPI-IO
|
|
creates one large file for all processors. :dd
|
|
|
|
{Read_dump command before simulation box is defined} :dt
|
|
|
|
The read_dump command cannot be used before a read_data, read_restart,
|
|
or create_box command. :dd
|
|
|
|
{Read_dump field not found in dump file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Read_dump triclinic status does not match simulation} :dt
|
|
|
|
Both the dump snapshot and the current LAMMPS simulation must
|
|
be using either an orthogonal or triclinic box. :dd
|
|
|
|
{Read_dump xyz fields do not have consistent scaling/wrapping} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Reading from MPI-IO filename when MPIIO package is not installed} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Reax_defs.h setting for NATDEF is too small} :dt
|
|
|
|
Edit the setting in the ReaxFF library and re-compile the
|
|
library and re-build LAMMPS. :dd
|
|
|
|
{Reax_defs.h setting for NNEIGHMAXDEF is too small} :dt
|
|
|
|
Edit the setting in the ReaxFF library and re-compile the
|
|
library and re-build LAMMPS. :dd
|
|
|
|
{Receiving partition in processors part command is already a receiver} :dt
|
|
|
|
Cannot specify a partition to be a receiver twice. :dd
|
|
|
|
{Region ID for compute reduce/region does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for compute temp/region does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for dump custom does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for fix addforce does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for fix ave/spatial does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for fix aveforce does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for fix deposit does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for fix efield does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for fix evaporate does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for fix gcmc does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for fix heat does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for fix setforce does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID for fix wall/region does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region ID in variable formula does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region cannot have 0 length rotation vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region intersect region ID does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Region union or intersect cannot be dynamic} :dt
|
|
|
|
The sub-regions can be dynamic, but not the combined region. :dd
|
|
|
|
{Region union region ID does not exist} :dt
|
|
|
|
One or more of the region IDs specified by the region union command
|
|
does not exist. :dd
|
|
|
|
{Replacing a fix, but new style != old style} :dt
|
|
|
|
A fix ID can be used a 2nd time, but only if the style matches the
|
|
previous fix. In this case it is assumed you with to reset a fix's
|
|
parameters. This error may mean you are mistakenly re-using a fix ID
|
|
when you do not intend to. :dd
|
|
|
|
{Replicate command before simulation box is defined} :dt
|
|
|
|
The replicate command cannot be used before a read_data, read_restart,
|
|
or create_box command. :dd
|
|
|
|
{Replicate did not assign all atoms correctly} :dt
|
|
|
|
Atoms replicated by the replicate command were not assigned correctly
|
|
to processors. This is likely due to some atom coordinates being
|
|
outside a non-periodic simulation box. :dd
|
|
|
|
{Replicated system atom IDs are too big} :dt
|
|
|
|
See the setting for tagint in the src/lmptype.h file. :dd
|
|
|
|
{Replicated system is too big} :dt
|
|
|
|
See the setting for bigint in the src/lmptype.h file. :dd
|
|
|
|
{Rerun command before simulation box is defined} :dt
|
|
|
|
The rerun command cannot be used before a read_data, read_restart, or
|
|
create_box command. :dd
|
|
|
|
{Rerun dump file does not contain requested snapshot} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Resetting timestep is not allowed with fix move} :dt
|
|
|
|
This is because fix move is moving atoms based on elapsed time. :dd
|
|
|
|
{Respa inner cutoffs are invalid} :dt
|
|
|
|
The first cutoff must be <= the second cutoff. :dd
|
|
|
|
{Respa levels must be >= 1} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Respa middle cutoffs are invalid} :dt
|
|
|
|
The first cutoff must be <= the second cutoff. :dd
|
|
|
|
{Restart file MPI-IO output not allowed with % in filename} :dt
|
|
|
|
This is because a % signifies one file per processor and MPI-IO
|
|
creates one large file for all processors. :dd
|
|
|
|
{Restart file byte ordering is not recognized} :dt
|
|
|
|
The file does not appear to be a LAMMPS restart file since it doesn't
|
|
contain a recognized byte-orderomg flag at the beginning. :dd
|
|
|
|
{Restart file byte ordering is swapped} :dt
|
|
|
|
The file was written on a machine with different byte-ordering than
|
|
the machine you are reading it on. Convert it to a text data file
|
|
instead, on the machine you wrote it on. :dd
|
|
|
|
{Restart file incompatible with current version} :dt
|
|
|
|
This is probably because you are trying to read a file created with a
|
|
version of LAMMPS that is too old compared to the current version.
|
|
Use your older version of LAMMPS and convert the restart file
|
|
to a data file. :dd
|
|
|
|
{Restart file is a MPI-IO file} :dt
|
|
|
|
The file is inconsistent with the filename you specified for it. :dd
|
|
|
|
{Restart file is a multi-proc file} :dt
|
|
|
|
The file is inconsistent with the filename you specified for it. :dd
|
|
|
|
{Restart file is not a MPI-IO file} :dt
|
|
|
|
The file is inconsistent with the filename you specified for it. :dd
|
|
|
|
{Restart file is not a multi-proc file} :dt
|
|
|
|
The file is inconsistent with the filename you specified for it. :dd
|
|
|
|
{Restart variable returned a bad timestep} :dt
|
|
|
|
The variable must return a timestep greater than the current timestep. :dd
|
|
|
|
{Restrain atoms %d %d %d %d missing on proc %d at step %ld} :dt
|
|
|
|
The 4 atoms in a restrain dihedral specified by the fix restrain
|
|
command are not all accessible to a processor. This probably means an
|
|
atom has moved too far. :dd
|
|
|
|
{Restrain atoms %d %d %d missing on proc %d at step %ld} :dt
|
|
|
|
The 3 atoms in a restrain angle specified by the fix restrain
|
|
command are not all accessible to a processor. This probably means an
|
|
atom has moved too far. :dd
|
|
|
|
{Restrain atoms %d %d missing on proc %d at step %ld} :dt
|
|
|
|
The 2 atoms in a restrain bond specified by the fix restrain
|
|
command are not all accessible to a processor. This probably means an
|
|
atom has moved too far. :dd
|
|
|
|
{Reuse of compute ID} :dt
|
|
|
|
A compute ID cannot be used twice. :dd
|
|
|
|
{Reuse of dump ID} :dt
|
|
|
|
A dump ID cannot be used twice. :dd
|
|
|
|
{Reuse of molecule template ID} :dt
|
|
|
|
The template IDs must be unique. :dd
|
|
|
|
{Reuse of region ID} :dt
|
|
|
|
A region ID cannot be used twice. :dd
|
|
|
|
{Rigid body atoms %d %d missing on proc %d at step %ld} :dt
|
|
|
|
This means that an atom cannot find the atom that owns the rigid body
|
|
it is part of, or vice versa. The solution is to use the communicate
|
|
cutoff command to insure ghost atoms are acquired from far enough away
|
|
to encompass the max distance printed when the fix rigid/small command
|
|
was invoked. :dd
|
|
|
|
{Rigid body has degenerate moment of inertia} :dt
|
|
|
|
Fix poems will only work with bodies (collections of atoms) that have
|
|
non-zero principal moments of inertia. This means they must be 3 or
|
|
more non-collinear atoms, even with joint atoms removed. :dd
|
|
|
|
{Rigid fix must come before NPT/NPH fix} :dt
|
|
|
|
NPT/NPH fix must be defined in input script after all rigid fixes,
|
|
else the rigid fix contribution to the pressure virial is
|
|
incorrect. :dd
|
|
|
|
{Rmask function in equal-style variable formula} :dt
|
|
|
|
Rmask is per-atom operation. :dd
|
|
|
|
{Run command before simulation box is defined} :dt
|
|
|
|
The run command cannot be used before a read_data, read_restart, or
|
|
create_box command. :dd
|
|
|
|
{Run command start value is after start of run} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Run command stop value is before end of run} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Run_style command before simulation box is defined} :dt
|
|
|
|
The run_style command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{SRD bin size for fix srd differs from user request} :dt
|
|
|
|
Fix SRD had to adjust the bin size to fit the simulation box. See the
|
|
cubic keyword if you want this message to be an error vs warning. :dd
|
|
|
|
{SRD bins for fix srd are not cubic enough} :dt
|
|
|
|
The bin shape is not within tolerance of cubic. See the cubic
|
|
keyword if you want this message to be an error vs warning. :dd
|
|
|
|
{SRD particle %d started inside big particle %d on step %ld bounce %d} :dt
|
|
|
|
See the inside keyword if you want this message to be an error vs
|
|
warning. :dd
|
|
|
|
{Same dimension twice in fix ave/spatial} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Sending partition in processors part command is already a sender} :dt
|
|
|
|
Cannot specify a partition to be a sender twice. :dd
|
|
|
|
{Set command before simulation box is defined} :dt
|
|
|
|
The set command cannot be used before a read_data, read_restart,
|
|
or create_box command. :dd
|
|
|
|
{Set command floating point vector does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Set command integer vector does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Set command with no atoms existing} :dt
|
|
|
|
No atoms are yet defined so the set command cannot be used. :dd
|
|
|
|
{Set region ID does not exist} :dt
|
|
|
|
Region ID specified in set command does not exist. :dd
|
|
|
|
{Shake angles have different bond types} :dt
|
|
|
|
All 3-atom angle-constrained SHAKE clusters specified by the fix shake
|
|
command that are the same angle type, must also have the same bond
|
|
types for the 2 bonds in the angle. :dd
|
|
|
|
{Shake atoms %d %d %d %d missing on proc %d at step %ld} :dt
|
|
|
|
The 4 atoms in a single shake cluster specified by the fix shake
|
|
command are not all accessible to a processor. This probably means
|
|
an atom has moved too far. :dd
|
|
|
|
{Shake atoms %d %d %d missing on proc %d at step %ld} :dt
|
|
|
|
The 3 atoms in a single shake cluster specified by the fix shake
|
|
command are not all accessible to a processor. This probably means
|
|
an atom has moved too far. :dd
|
|
|
|
{Shake atoms %d %d missing on proc %d at step %ld} :dt
|
|
|
|
The 2 atoms in a single shake cluster specified by the fix shake
|
|
command are not all accessible to a processor. This probably means
|
|
an atom has moved too far. :dd
|
|
|
|
{Shake cluster of more than 4 atoms} :dt
|
|
|
|
A single cluster specified by the fix shake command can have no more
|
|
than 4 atoms. :dd
|
|
|
|
{Shake clusters are connected} :dt
|
|
|
|
A single cluster specified by the fix shake command must have a single
|
|
central atom with up to 3 other atoms bonded to it. :dd
|
|
|
|
{Shake determinant = 0.0} :dt
|
|
|
|
The determinant of the matrix being solved for a single cluster
|
|
specified by the fix shake command is numerically invalid. :dd
|
|
|
|
{Shake fix must come before NPT/NPH fix} :dt
|
|
|
|
NPT fix must be defined in input script after SHAKE fix, else the
|
|
SHAKE fix contribution to the pressure virial is incorrect. :dd
|
|
|
|
{Shear history overflow, boost neigh_modify one} :dt
|
|
|
|
There are too many neighbors of a single atom. Use the neigh_modify
|
|
command to increase the max number of neighbors allowed for one atom.
|
|
You may also want to boost the page size. :dd
|
|
|
|
{Small to big integers are not sized correctly} :dt
|
|
|
|
This error occurs whenthe sizes of smallint, imageint, tagint, bigint,
|
|
as defined in src/lmptype.h are not what is expected. Contact
|
|
the developers if this occurs. :dd
|
|
|
|
{Smallint setting in lmptype.h is invalid} :dt
|
|
|
|
It has to be the size of an integer. :dd
|
|
|
|
{Smallint setting in lmptype.h is not compatible} :dt
|
|
|
|
Smallint stored in restart file is not consistent with LAMMPS version
|
|
you are running. :dd
|
|
|
|
{Specified processors != physical processors} :dt
|
|
|
|
The 3d grid of processors defined by the processors command does not
|
|
match the number of processors LAMMPS is being run on. :dd
|
|
|
|
{Specified target stress must be uniaxial or hydrostatic} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Sqrt of negative value in variable formula} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Substitution for illegal variable} :dt
|
|
|
|
Input script line contained a variable that could not be substituted
|
|
for. :dd
|
|
|
|
{Support for writing images in JPEG format not included} :dt
|
|
|
|
LAMMPS was not built with the -DLAMMPS_JPEG switch in the Makefile. :dd
|
|
|
|
{Support for writing images in PNG format not included} :dt
|
|
|
|
LAMMPS was not built with the -DLAMMPS_PNG switch in the Makefile. :dd
|
|
|
|
{Support for writing movies not included} :dt
|
|
|
|
LAMMPS was not built with the -DLAMMPS_FFMPEG switch in the Makefile :dd
|
|
|
|
{System in data file is too big} :dt
|
|
|
|
See the setting for bigint in the src/lmptype.h file. :dd
|
|
|
|
{System is not charge neutral, net charge = %g} :dt
|
|
|
|
The total charge on all atoms on the system is not 0.0, which
|
|
is not valid for the long-range Coulombic solvers. :dd
|
|
|
|
{TAD nsteps must be multiple of t_event} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{TIP4P hydrogen has incorrect atom type} :dt
|
|
|
|
The TIP4P pairwise computation found an H atom whose type does not
|
|
agree with the specified H type. :dd
|
|
|
|
{TIP4P hydrogen is missing} :dt
|
|
|
|
The TIP4P pairwise computation failed to find the correct H atom
|
|
within a water molecule. :dd
|
|
|
|
{TMD target file did not list all group atoms} :dt
|
|
|
|
The target file for the fix tmd command did not list all atoms in the
|
|
fix group. :dd
|
|
|
|
{Tad command before simulation box is defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Tagint setting in lmptype.h is invalid} :dt
|
|
|
|
Tagint must be as large or larger than smallint. :dd
|
|
|
|
{Tagint setting in lmptype.h is not compatible} :dt
|
|
|
|
Format of tagint stored in restart file is not consistent with LAMMPS
|
|
version you are running. See the settings in src/lmptype.h :dd
|
|
|
|
{Target temperature for fix nvt/npt/nph cannot be 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Target temperature for fix rigid/npt cannot be 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Target temperature for fix rigid/nvt cannot be 0.0} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temper command before simulation box is defined} :dt
|
|
|
|
The temper command cannot be used before a read_data, read_restart, or
|
|
create_box command. :dd
|
|
|
|
{Temperature ID for fix bond/swap does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature ID for fix box/relax does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature ID for fix nvt/npt does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature ID for fix press/berendsen does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature ID for fix rigid nvt/npt/nph does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature ID for fix temp/berendsen does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature ID for fix temp/rescale does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature control can not be used with fix nph} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature control can not be used with fix nph/asphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature control can not be used with fix nph/sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature control must be used with fix nphug} :dt
|
|
|
|
The temp keyword must be provided. :dd
|
|
|
|
{Temperature control must be used with fix npt} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature control must be used with fix npt/asphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature control must be used with fix npt/sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature control must be used with fix nvt} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature control must be used with fix nvt/asphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature control must be used with fix nvt/sllod} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature control must be used with fix nvt/sphere} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Temperature for fix nvt/sllod does not have a bias} :dt
|
|
|
|
The specified compute must compute temperature with a bias. :dd
|
|
|
|
{Tempering could not find thermo_pe compute} :dt
|
|
|
|
This compute is created by the thermo command. It must have been
|
|
explicitly deleted by a uncompute command. :dd
|
|
|
|
{Tempering fix ID is not defined} :dt
|
|
|
|
The fix ID specified by the temper command does not exist. :dd
|
|
|
|
{Tempering temperature fix is not valid} :dt
|
|
|
|
The fix specified by the temper command is not one that controls
|
|
temperature (nvt or langevin). :dd
|
|
|
|
{Test_descriptor_string already allocated} :dt
|
|
|
|
This is an internal error. Contact the developers. :dd
|
|
|
|
{The package gpu command is required for gpu styles} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo and fix not computed at compatible times} :dt
|
|
|
|
Fixes generate values on specific timesteps. The thermo output
|
|
does not match these timesteps. :dd
|
|
|
|
{Thermo compute array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo compute does not compute array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo compute does not compute scalar} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo compute does not compute vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo compute vector is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo custom variable cannot be indexed} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo custom variable is not equal-style variable} :dt
|
|
|
|
Only equal-style variables can be output with thermodynamics, not
|
|
atom-style variables. :dd
|
|
|
|
{Thermo every variable returned a bad timestep} :dt
|
|
|
|
The variable must return a timestep greater than the current timestep. :dd
|
|
|
|
{Thermo fix array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo fix does not compute array} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo fix does not compute scalar} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo fix does not compute vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo fix vector is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo keyword in variable requires thermo to use/init pe} :dt
|
|
|
|
You are using a thermo keyword in a variable that requires
|
|
potential energy to be calculated, but your thermo output
|
|
does not use it. Add it to your thermo output. :dd
|
|
|
|
{Thermo keyword in variable requires thermo to use/init press} :dt
|
|
|
|
You are using a thermo keyword in a variable that requires pressure to
|
|
be calculated, but your thermo output does not use it. Add it to your
|
|
thermo output. :dd
|
|
|
|
{Thermo keyword in variable requires thermo to use/init temp} :dt
|
|
|
|
You are using a thermo keyword in a variable that requires temperature
|
|
to be calculated, but your thermo output does not use it. Add it to
|
|
your thermo output. :dd
|
|
|
|
{Thermo style does not use press} :dt
|
|
|
|
Cannot use thermo_modify to set this parameter since the thermo_style
|
|
is not computing this quantity. :dd
|
|
|
|
{Thermo style does not use temp} :dt
|
|
|
|
Cannot use thermo_modify to set this parameter since the thermo_style
|
|
is not computing this quantity. :dd
|
|
|
|
{Thermo_modify int format does not contain d character} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Thermo_modify pressure ID does not compute pressure} :dt
|
|
|
|
The specified compute ID does not compute pressure. :dd
|
|
|
|
{Thermo_modify temperature ID does not compute temperature} :dt
|
|
|
|
The specified compute ID does not compute temperature. :dd
|
|
|
|
{Thermo_style command before simulation box is defined} :dt
|
|
|
|
The thermo_style command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{This variable thermo keyword cannot be used between runs} :dt
|
|
|
|
Keywords that refer to time (such as cpu, elapsed) do not
|
|
make sense in between runs. :dd
|
|
|
|
{Threshhold for an atom property that isn't allocated} :dt
|
|
|
|
A dump threshhold has been requested on a quantity that is
|
|
not defined by the atom style used in this simulation. :dd
|
|
|
|
{Timestep must be >= 0} :dt
|
|
|
|
Specified timestep is invalid. :dd
|
|
|
|
{Too big a problem to use velocity create loop all} :dt
|
|
|
|
The system size must fit in a 32-bit integer to use this option. :dd
|
|
|
|
{Too big a timestep} :dt
|
|
|
|
Specified timestep is too large. :dd
|
|
|
|
{Too big a timestep for dump dcd} :dt
|
|
|
|
The timestep must fit in a 32-bit integer to use this dump style. :dd
|
|
|
|
{Too big a timestep for dump xtc} :dt
|
|
|
|
The timestep must fit in a 32-bit integer to use this dump style. :dd
|
|
|
|
{Too few bits for lookup table} :dt
|
|
|
|
Table size specified via pair_modify command does not work with your
|
|
machine's floating point representation. :dd
|
|
|
|
{Too many MSM grid levels} :dt
|
|
|
|
The max number of MSM grid levels is hardwired to 10. :dd
|
|
|
|
{Too many atom pairs for pair bop} :dt
|
|
|
|
The number of atomic pairs exceeds the expected number. Check your
|
|
atomic structure to ensure that it is realistic. :dd
|
|
|
|
{Too many atom sorting bins} :dt
|
|
|
|
This is likely due to an immense simulation box that has blown up
|
|
to a large size. :dd
|
|
|
|
{Too many atom triplets for pair bop} :dt
|
|
|
|
The number of three atom groups for angle determinations exceeds the
|
|
expected number. Check your atomic structrure to ensure that it is
|
|
realistic. :dd
|
|
|
|
{Too many atoms for dump dcd} :dt
|
|
|
|
The system size must fit in a 32-bit integer to use this dump
|
|
style. :dd
|
|
|
|
{Too many atoms for dump xtc} :dt
|
|
|
|
The system size must fit in a 32-bit integer to use this dump
|
|
style. :dd
|
|
|
|
{Too many atoms to dump sort} :dt
|
|
|
|
Cannot sort when running with more than 2^31 atoms. :dd
|
|
|
|
{Too many exponent bits for lookup table} :dt
|
|
|
|
Table size specified via pair_modify command does not work with your
|
|
machine's floating point representation. :dd
|
|
|
|
{Too many groups} :dt
|
|
|
|
The maximum number of atom groups (including the "all" group) is
|
|
given by MAX_GROUP in group.cpp and is 32. :dd
|
|
|
|
{Too many iterations} :dt
|
|
|
|
You must use a number of iterations that fit in a 32-bit integer
|
|
for minimization. :dd
|
|
|
|
{Too many lines in one body in data file - boost MAXBODY} :dt
|
|
|
|
MAXBODY is a setting at the top of the src/read_data.cpp file.
|
|
Set it larger and re-compile the code. :dd
|
|
|
|
{Too many local+ghost atoms for neighbor list} :dt
|
|
|
|
The number of nlocal + nghost atoms on a processor
|
|
is limited by the size of a 32-bit integer with 2 bits
|
|
removed for masking 1-2, 1-3, 1-4 neighbors. :dd
|
|
|
|
{Too many mantissa bits for lookup table} :dt
|
|
|
|
Table size specified via pair_modify command does not work with your
|
|
machine's floating point representation. :dd
|
|
|
|
{Too many masses for fix shake} :dt
|
|
|
|
The fix shake command cannot list more masses than there are atom
|
|
types. :dd
|
|
|
|
{Too many molecules for compute} :dt
|
|
|
|
The limit is 2^31 = ~2 billion molecules. :dd
|
|
|
|
{Too many molecules for fix poems} :dt
|
|
|
|
The limit is 2^31 = ~2 billion molecules. :dd
|
|
|
|
{Too many molecules for fix rigid} :dt
|
|
|
|
The limit is 2^31 = ~2 billion molecules. :dd
|
|
|
|
{Too many neighbor bins} :dt
|
|
|
|
This is likely due to an immense simulation box that has blown up
|
|
to a large size. :dd
|
|
|
|
{Too many timesteps} :dt
|
|
|
|
The cummulative timesteps must fit in a 64-bit integer. :dd
|
|
|
|
{Too many timesteps for NEB} :dt
|
|
|
|
You must use a number of timesteps that fit in a 32-bit integer
|
|
for NEB. :dd
|
|
|
|
{Too many total atoms} :dt
|
|
|
|
See the setting for bigint in the src/lmptype.h file. :dd
|
|
|
|
{Too many total bits for bitmapped lookup table} :dt
|
|
|
|
Table size specified via pair_modify command is too large. Note that
|
|
a value of N generates a 2^N size table. :dd
|
|
|
|
{Too much buffered per-proc info for dump} :dt
|
|
|
|
The size of the buffered string must fit in a 32-bit integer for a
|
|
dump. :dd
|
|
|
|
{Too much per-proc info for dump} :dt
|
|
|
|
Number of local atoms times number of columns must fit in a 32-bit
|
|
integer for dump. :dd
|
|
|
|
{Tree structure in joint connections} :dt
|
|
|
|
Fix poems cannot (yet) work with coupled bodies whose joints connect
|
|
the bodies in a tree structure. :dd
|
|
|
|
{Triclinic box skew is too large} :dt
|
|
|
|
The displacement in a skewed direction must be less than half the box
|
|
length in that dimension. E.g. the xy tilt must be between -half and
|
|
+half of the x box length. This constraint can be relaxed by using
|
|
the box tilt command. :dd
|
|
|
|
{Tried to convert a double to int, but input_double > INT_MAX} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Two groups cannot be the same in fix spring couple} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{USER-CUDA mode requires CUDA variant of min style} :dt
|
|
|
|
CUDA mode is enabled, so the min style must include a cuda suffix. :dd
|
|
|
|
{USER-CUDA mode requires CUDA variant of run style} :dt
|
|
|
|
CUDA mode is enabled, so the run style must include a cuda suffix. :dd
|
|
|
|
{USER-CUDA package requires a cuda enabled atom_style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Unable to initialize accelerator for use} :dt
|
|
|
|
There was a problem initializing an accelerator for the gpu package :dd
|
|
|
|
{Unbalanced quotes in input line} :dt
|
|
|
|
No matching end double quote was found following a leading double
|
|
quote. :dd
|
|
|
|
{Unexpected end of -reorder file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Unexpected end of custom file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Unexpected end of data file} :dt
|
|
|
|
LAMMPS hit the end of the data file while attempting to read a
|
|
section. Something is wrong with the format of the data file. :dd
|
|
|
|
{Unexpected end of dump file} :dt
|
|
|
|
A read operation from the file failed. :dd
|
|
|
|
{Unexpected end of fix rigid file} :dt
|
|
|
|
A read operation from the file failed. :dd
|
|
|
|
{Unexpected end of fix rigid/small file} :dt
|
|
|
|
A read operation from the file failed. :dd
|
|
|
|
{Unexpected end of molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Unexpected end of neb file} :dt
|
|
|
|
A read operation from the file failed. :dd
|
|
|
|
{Units command after simulation box is defined} :dt
|
|
|
|
The units command cannot be used after a read_data, read_restart, or
|
|
create_box command. :dd
|
|
|
|
{Universe/uloop variable count < # of partitions} :dt
|
|
|
|
A universe or uloop style variable must specify a number of values >= to the
|
|
number of processor partitions. :dd
|
|
|
|
{Unknown command: %s} :dt
|
|
|
|
The command is not known to LAMMPS. Check the input script. :dd
|
|
|
|
{Unknown error in GPU library} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Unknown identifier in data file: %s} :dt
|
|
|
|
A section of the data file cannot be read by LAMMPS. :dd
|
|
|
|
{Unknown section in molecule file} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Unknown table style in angle style table} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Unknown table style in bond style table} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Unknown table style in pair_style command} :dt
|
|
|
|
Style of table is invalid for use with pair_style table command. :dd
|
|
|
|
{Unknown unit_style} :dt
|
|
|
|
Self-explanatory. Check the input script or data file. :dd
|
|
|
|
{Unrecognized lattice type in MEAM file 1} :dt
|
|
|
|
The lattice type in an entry of the MEAM library file is not
|
|
valid. :dd
|
|
|
|
{Unrecognized lattice type in MEAM file 2} :dt
|
|
|
|
The lattice type in an entry of the MEAM parameter file is not
|
|
valid. :dd
|
|
|
|
{Unrecognized pair style in compute pair command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Unrecognized virial argument in pair_style command} :dt
|
|
|
|
Only two options are supported: LAMMPSvirial and KIMvirial :dd
|
|
|
|
{Unsupported mixing rule in kspace_style ewald/disp} :dt
|
|
|
|
Only geometric mixing is supported. :dd
|
|
|
|
{Unsupported order in kspace_style ewald/disp} :dt
|
|
|
|
Only 1/r^6 dispersion or dipole terms are supported. :dd
|
|
|
|
{Unsupported order in kspace_style pppm/disp, pair_style %s} :dt
|
|
|
|
Only pair styles with 1/r and 1/r^6 dependence are currently supported. :dd
|
|
|
|
{Using fix nvt/sllod with inconsistent fix deform remap option} :dt
|
|
|
|
Fix nvt/sllod requires that deforming atoms have a velocity profile
|
|
provided by "remap v" as a fix deform option. :dd
|
|
|
|
{Using fix nvt/sllod with no fix deform defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Using fix srd with inconsistent fix deform remap option} :dt
|
|
|
|
When shearing the box in an SRD simulation, the remap v option for fix
|
|
deform needs to be used. :dd
|
|
|
|
{Using pair lubricate with inconsistent fix deform remap option} :dt
|
|
|
|
Must use remap v option with fix deform with this pair style. :dd
|
|
|
|
{Using pair lubricate/poly with inconsistent fix deform remap option} :dt
|
|
|
|
If fix deform is used, the remap v option is required. :dd
|
|
|
|
{Variable ID in variable formula does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable evaluation before simulation box is defined} :dt
|
|
|
|
Cannot evaluate a compute or fix or atom-based value in a variable
|
|
before the simulation has been setup. :dd
|
|
|
|
{Variable evaluation in fix wall gave bad value} :dt
|
|
|
|
The returned value for epsilon or sigma < 0.0. :dd
|
|
|
|
{Variable evaluation in region gave bad value} :dt
|
|
|
|
Variable returned a radius < 0.0. :dd
|
|
|
|
{Variable for compute ti is invalid style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable for dump every is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for dump image center is invalid style} :dt
|
|
|
|
Must be an equal-style variable. :dd
|
|
|
|
{Variable for dump image persp is invalid style} :dt
|
|
|
|
Must be an equal-style variable. :dd
|
|
|
|
{Variable for dump image phi is invalid style} :dt
|
|
|
|
Must be an equal-style variable. :dd
|
|
|
|
{Variable for dump image theta is invalid style} :dt
|
|
|
|
Must be an equal-style variable. :dd
|
|
|
|
{Variable for dump image zoom is invalid style} :dt
|
|
|
|
Must be an equal-style variable. :dd
|
|
|
|
{Variable for fix adapt is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for fix addforce is invalid style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable for fix aveforce is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for fix deform is invalid style} :dt
|
|
|
|
The variable must be an equal-style variable. :dd
|
|
|
|
{Variable for fix efield is invalid style} :dt
|
|
|
|
The variable must be an equal- or atom-style variable. :dd
|
|
|
|
{Variable for fix gravity is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for fix heat is invalid style} :dt
|
|
|
|
Only equal-style or atom-style variables can be used. :dd
|
|
|
|
{Variable for fix indent is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for fix indent is not equal style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for fix langevin is invalid style} :dt
|
|
|
|
It must be an equal-style variable. :dd
|
|
|
|
{Variable for fix move is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for fix setforce is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for fix temp/berendsen is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for fix temp/rescale is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for fix wall is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for fix wall/reflect is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for fix wall/srd is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for group is invalid style} :dt
|
|
|
|
Only atom-style variables can be used. :dd
|
|
|
|
{Variable for region cylinder is invalid style} :dt
|
|
|
|
Only equal-style varaibles are allowed. :dd
|
|
|
|
{Variable for region is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for region is not equal style} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable for region sphere is invalid style} :dt
|
|
|
|
Only equal-style varaibles are allowed. :dd
|
|
|
|
{Variable for restart is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for set command is invalid style} :dt
|
|
|
|
Only atom-style variables can be used. :dd
|
|
|
|
{Variable for thermo every is invalid style} :dt
|
|
|
|
Only equal-style variables can be used. :dd
|
|
|
|
{Variable for velocity set is invalid style} :dt
|
|
|
|
Only atom-style variables can be used. :dd
|
|
|
|
{Variable for voronoi radius is not atom style} :dt
|
|
|
|
The variable used for this command must be an atom-style variable.
|
|
See the variable command for details. :dd
|
|
|
|
{Variable formula compute array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable formula compute vector is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable formula fix array is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable formula fix vector is accessed out-of-range} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable has circular dependency} :dt
|
|
|
|
A circular dependency is when variable "a" in used by variable "b" and
|
|
variable "b" is also used by varaible "a". Circular dependencies with
|
|
longer chains of dependence are also not allowed. :dd
|
|
|
|
{Variable name for compute atom/molecule does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for compute reduce does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for compute ti does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for dump every does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for dump image center does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for dump image persp does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for dump image phi does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for dump image theta does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for dump image zoom does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix adapt does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix addforce does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix ave/atom does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix ave/correlate does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix ave/histo does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix ave/spatial does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix ave/time does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix aveforce does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix deform does not exist} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Variable name for fix efield does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix gravity does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix heat does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix indent does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix langevin does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix move does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix setforce does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix store/state does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix temp/berendsen does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix temp/rescale does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix wall does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix wall/reflect does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for fix wall/srd does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for group does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for region cylinder does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for region does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for region sphere does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for restart does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for set command does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for thermo every does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for velocity set does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name for voronoi radius does not exist} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable name must be alphanumeric or underscore characters} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Variable uses atom property that isn't allocated} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Velocity command before simulation box is defined} :dt
|
|
|
|
The velocity command cannot be used before a read_data, read_restart,
|
|
or create_box command. :dd
|
|
|
|
{Velocity command with no atoms existing} :dt
|
|
|
|
A velocity command has been used, but no atoms yet exist. :dd
|
|
|
|
{Velocity ramp in z for a 2d problem} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Velocity rigid used with non-rigid fix-ID} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Velocity temperature ID does not compute temperature} :dt
|
|
|
|
The compute ID given to the velocity command must compute
|
|
temperature. :dd
|
|
|
|
{Verlet/split does not yet support TIP4P} :dt
|
|
|
|
This is a current limitation. :dd
|
|
|
|
{Verlet/split requires 2 partitions} :dt
|
|
|
|
See the -partition command-line switch. :dd
|
|
|
|
{Verlet/split requires Rspace partition layout be multiple of Kspace partition layout in each dim} :dt
|
|
|
|
This is controlled by the processors command. :dd
|
|
|
|
{Verlet/split requires Rspace partition size be multiple of Kspace partition size} :dt
|
|
|
|
This is so there is an equal number of Rspace processors for every
|
|
Kspace processor. :dd
|
|
|
|
{Virial was not tallied on needed timestep} :dt
|
|
|
|
You are using a thermo keyword that requires potentials to
|
|
have tallied the virial, but they didn't on this timestep. See the
|
|
variable doc page for ideas on how to make this work. :dd
|
|
|
|
{Wall defined twice in fix wall command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Wall defined twice in fix wall/reflect command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Wall defined twice in fix wall/srd command} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Water H epsilon must be 0.0 for pair style lj/cut/tip4p/cut} :dt
|
|
|
|
This is because LAMMPS does not compute the Lennard-Jones interactions
|
|
with these particles for efficiency reasons. :dd
|
|
|
|
{Water H epsilon must be 0.0 for pair style lj/cut/tip4p/long} :dt
|
|
|
|
This is because LAMMPS does not compute the Lennard-Jones interactions
|
|
with these particles for efficiency reasons. :dd
|
|
|
|
{Water H epsilon must be 0.0 for pair style lj/long/tip4p/long} :dt
|
|
|
|
This is because LAMMPS does not compute the Lennard-Jones interactions
|
|
with these particles for efficiency reasons. :dd
|
|
|
|
{World variable count doesn't match # of partitions} :dt
|
|
|
|
A world-style variable must specify a number of values equal to the
|
|
number of processor partitions. :dd
|
|
|
|
{Write_data command before simulation box is defined} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Write_restart command before simulation box is defined} :dt
|
|
|
|
The write_restart command cannot be used before a read_data,
|
|
read_restart, or create_box command. :dd
|
|
|
|
{Writing to MPI-IO filename when MPIIO package is not installed} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Zero length rotation vector with displace_atoms} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Zero length rotation vector with fix move} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Zero-length lattice orient vector} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
:dle
|
|
|
|
Warnings: :h4,link(warn)
|
|
|
|
:dlb
|
|
|
|
{Adjusting Coulombic cutoff for MSM, new cutoff = %g} :dt
|
|
|
|
The adjust/cutoff command is turned on and the Coulombic cutoff has been
|
|
adjusted to match the user-specified accuracy. :dd
|
|
|
|
{Angle atoms missing at step %ld} :dt
|
|
|
|
One or more of 3 atoms needed to compute a particular angle are
|
|
missing on this processor. Typically this is because the pairwise
|
|
cutoff is set too short or the angle has blown apart and an atom is
|
|
too far away. :dd
|
|
|
|
{Atom with molecule ID = 0 included in compute molecule group} :dt
|
|
|
|
The group used in a compute command that operates on moleclues
|
|
includes atoms with no molecule ID. This is probably not what you
|
|
want. :dd
|
|
|
|
{Bond atom missing in box size check} :dt
|
|
|
|
The 2nd atoms needed to compute a particular bond is missing on this
|
|
processor. Typically this is because the pairwise cutoff is set too
|
|
short or the bond has blown apart and an atom is too far away. :dd
|
|
|
|
{Bond atom missing in image check} :dt
|
|
|
|
The 2nd atom in a particular bond is missing on this processor.
|
|
Typically this is because the pairwise cutoff is set too short or the
|
|
bond has blown apart and an atom is too far away. :dd
|
|
|
|
{Bond atoms missing at step %ld} :dt
|
|
|
|
The 2nd atom needed to compute a particular bond is missing on this
|
|
processor. Typically this is because the pairwise cutoff is set too
|
|
short or the bond has blown apart and an atom is too far away. :dd
|
|
|
|
{Bond/angle/dihedral extent > half of periodic box length} :dt
|
|
|
|
This is a restriction because LAMMPS can be confused about which image
|
|
of an atom in the bonded interaction is the correct one to use.
|
|
"Extent" in this context means the maximum end-to-end length of the
|
|
bond/angle/dihedral. LAMMPS computes this by taking the maximum bond
|
|
length, multiplying by the number of bonds in the interaction (e.g. 3
|
|
for a dihedral) and adding a small amount of stretch. :dd
|
|
|
|
{Both groups in compute group/group have a net charge; the Kspace boundary correction to energy will be non-zero} :dt
|
|
|
|
Self-explantory. :dd
|
|
|
|
{Broken bonds will not alter angles, dihedrals, or impropers} :dt
|
|
|
|
See the doc page for fix bond/break for more info on this
|
|
restriction. :dd
|
|
|
|
{Building an occasional neighobr list when atoms may have moved too far} :dt
|
|
|
|
This can cause LAMMPS to crash when the neighbor list is built.
|
|
The solution is to check for building the regular neighbor lists
|
|
more frequently. :dd
|
|
|
|
{Cannot count rigid body degrees-of-freedom before bodies are fully initialized} :dt
|
|
|
|
This means the temperature associated with the rigid bodies may be
|
|
incorrect on this timestep. :dd
|
|
|
|
{Cannot include log terms without 1/r terms; setting flagHI to 1} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Cannot include log terms without 1/r terms; setting flagHI to 1.} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Charges are set, but coulombic solver is not used} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Compute cna/atom cutoff may be too large to find ghost atom neighbors} :dt
|
|
|
|
The neighbor cutoff used may not encompass enough ghost atoms
|
|
to perform this operation correctly. :dd
|
|
|
|
{Computing temperature of portions of rigid bodies} :dt
|
|
|
|
The group defined by the temperature compute does not encompass all
|
|
the atoms in one or more rigid bodies, so the change in
|
|
degrees-of-freedom for the atoms in those partial rigid bodies will
|
|
not be accounted for. :dd
|
|
|
|
{Created bonds will not create angles, dihedrals, or impropers} :dt
|
|
|
|
See the doc page for fix bond/create for more info on this
|
|
restriction. :dd
|
|
|
|
{Dihedral atoms missing at step %ld} :dt
|
|
|
|
One or more of 4 atoms needed to compute a particular dihedral are
|
|
missing on this processor. Typically this is because the pairwise
|
|
cutoff is set too short or the dihedral has blown apart and an atom is
|
|
too far away. :dd
|
|
|
|
{Dihedral problem: %d %ld %d %d %d %d} :dt
|
|
|
|
Conformation of the 4 listed dihedral atoms is extreme; you may want
|
|
to check your simulation geometry. :dd
|
|
|
|
{Dump dcd/xtc timestamp may be wrong with fix dt/reset} :dt
|
|
|
|
If the fix changes the timestep, the dump dcd file will not
|
|
reflect the change. :dd
|
|
|
|
{Error in splitting of dispersion coeffs is estimated %g%} :dt
|
|
|
|
Error is greater than 0.0001 percent. :dd
|
|
|
|
{Ewald/disp Newton solver failed, using old method to estimate g_ewald} :dt
|
|
|
|
Self-explanatory. Choosing a different cutoff value may help. :dd
|
|
|
|
{FENE bond too long: %ld %d %d %g} :dt
|
|
|
|
A FENE bond has stretched dangerously far. It's interaction strength
|
|
will be truncated to attempt to prevent the bond from blowing up. :dd
|
|
|
|
{FENE bond too long: %ld %g} :dt
|
|
|
|
A FENE bond has stretched dangerously far. It's interaction strength
|
|
will be truncated to attempt to prevent the bond from blowing up. :dd
|
|
|
|
{Fix SRD walls overlap but fix srd overlap not set} :dt
|
|
|
|
You likely want to set this in your input script. :dd
|
|
|
|
{Fix bond/swap will ignore defined angles} :dt
|
|
|
|
See the doc page for fix bond/swap for more info on this
|
|
restriction. :dd
|
|
|
|
{Fix evaporate may delete atom with non-zero molecule ID} :dt
|
|
|
|
This is probably an error, since you should not delete only one atom
|
|
of a molecule. :dd
|
|
|
|
{Fix move does not update angular momentum} :dt
|
|
|
|
Atoms store this quantity, but fix move does not (yet) update it. :dd
|
|
|
|
{Fix move does not update quaternions} :dt
|
|
|
|
Atoms store this quantity, but fix move does not (yet) update it. :dd
|
|
|
|
{Fix recenter should come after all other integration fixes} :dt
|
|
|
|
Other fixes may change the position of the center-of-mass, so
|
|
fix recenter should come last. :dd
|
|
|
|
{Fix srd SRD moves may trigger frequent reneighboring} :dt
|
|
|
|
This is because the SRD particles may move long distances. :dd
|
|
|
|
{Fix srd grid size > 1/4 of big particle diameter} :dt
|
|
|
|
This may cause accuracy problems. :dd
|
|
|
|
{Fix srd particle moved outside valid domain} :dt
|
|
|
|
This may indicate a problem with your simulation parameters. :dd
|
|
|
|
{Fix srd particles may move > big particle diameter} :dt
|
|
|
|
This may cause accuracy problems. :dd
|
|
|
|
{Fix srd viscosity < 0.0 due to low SRD density} :dt
|
|
|
|
This may cause accuracy problems. :dd
|
|
|
|
{Fix thermal/conductivity comes before fix ave/spatial} :dt
|
|
|
|
The order of these 2 fixes in your input script is such that fix
|
|
thermal/conductivity comes first. If you are using fix ave/spatial to
|
|
measure the temperature profile induced by fix viscosity, then this
|
|
may cause a glitch in the profile since you are averaging immediately
|
|
after swaps have occurred. Flipping the order of the 2 fixes
|
|
typically helps. :dd
|
|
|
|
{Fix viscosity comes before fix ave/spatial} :dt
|
|
|
|
The order of these 2 fixes in your input script is such that
|
|
fix viscosity comes first. If you are using fix ave/spatial
|
|
to measure the velocity profile induced by fix viscosity, then
|
|
this may cause a glitch in the profile since you are averaging
|
|
immediately after swaps have occurred. Flipping the order
|
|
of the 2 fixes typically helps. :dd
|
|
|
|
{For better accuracy use 'pair_modify table 0'} :dt
|
|
|
|
The user-specified force accuracy cannot be achieved unless the table
|
|
feature is disabled by using 'pair_modify table 0'. :dd
|
|
|
|
{Geometric mixing assumed for 1/r^6 coefficients} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Group for fix_modify temp != fix group} :dt
|
|
|
|
The fix_modify command is specifying a temperature computation that
|
|
computes a temperature on a different group of atoms than the fix
|
|
itself operates on. This is probably not what you want to do. :dd
|
|
|
|
{Improper atoms missing at step %ld} :dt
|
|
|
|
One or more of 4 atoms needed to compute a particular improper are
|
|
missing on this processor. Typically this is because the pairwise
|
|
cutoff is set too short or the improper has blown apart and an atom is
|
|
too far away. :dd
|
|
|
|
{Improper problem: %d %ld %d %d %d %d} :dt
|
|
|
|
Conformation of the 4 listed improper atoms is extreme; you may want
|
|
to check your simulation geometry. :dd
|
|
|
|
{Inconsistent image flags} :dt
|
|
|
|
The image flags for a pair on bonded atoms appear to be inconsistent.
|
|
Inconsistent means that when the coordinates of the two atoms are
|
|
unwrapped using the image flags, the two atoms are far apart.
|
|
Specifically they are further apart than half a periodic box length.
|
|
Or they are more than a box length apart in a non-periodic dimension.
|
|
This is usually due to the initial data file not having correct image
|
|
flags for the 2 atoms in a bond that straddles a periodic boundary.
|
|
They should be different by 1 in that case. This is a warning because
|
|
inconsistent image flags will not cause problems for dynamics or most
|
|
LAMMPS simulations. However they can cause problems when such atoms
|
|
are used with the fix rigid or replicate commands. :dd
|
|
|
|
{KIM Model does not provide `energy'; Potential energy will be zero} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{KIM Model does not provide `forces'; Forces will be zero} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{KIM Model does not provide `particleEnergy'; energy per atom will be zero} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{KIM Model does not provide `particleVirial'; virial per atom will be zero} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Kspace_modify slab param < 2.0 may cause unphysical behavior} :dt
|
|
|
|
The kspace_modify slab parameter should be larger to insure periodic
|
|
grids padded with empty space do not overlap. :dd
|
|
|
|
{Less insertions than requested} :dt
|
|
|
|
The fix pour command was unsuccessful at finding open space
|
|
for as many particles as it tried to insert. :dd
|
|
|
|
{Library error in lammps_gather_atoms} :dt
|
|
|
|
This library function cannot be used if atom IDs are not defined
|
|
or are not consecutively numbered. :dd
|
|
|
|
{Library error in lammps_scatter_atoms} :dt
|
|
|
|
This library function cannot be used if atom IDs are not defined or
|
|
are not consecutively numbered, or if no atom map is defined. See the
|
|
atom_modify command for details about atom maps. :dd
|
|
|
|
{Lost atoms via change_box: original %ld current %ld} :dt
|
|
|
|
The command options you have used caused atoms to be lost. :dd
|
|
|
|
{Lost atoms via displace_atoms: original %ld current %ld} :dt
|
|
|
|
The command options you have used caused atoms to be lost. :dd
|
|
|
|
{Lost atoms: original %ld current %ld} :dt
|
|
|
|
Lost atoms are checked for each time thermo output is done. See the
|
|
thermo_modify lost command for options. Lost atoms usually indicate
|
|
bad dynamics, e.g. atoms have been blown far out of the simulation
|
|
box, or moved futher than one processor's sub-domain away before
|
|
reneighboring. :dd
|
|
|
|
{MSM mesh too small, increasing to 2 points in each direction} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Mismatch between velocity and compute groups} :dt
|
|
|
|
The temperature computation used by the velocity command will not be
|
|
on the same group of atoms that velocities are being set for. :dd
|
|
|
|
{Mixing forced for lj coefficients} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Molecule attributes do not match system attributes} :dt
|
|
|
|
An attribute is specified (e.g. diameter, charge) that is
|
|
not defined for the specified atom style. :dd
|
|
|
|
{Molecule has bond topology but no special bond settings} :dt
|
|
|
|
This means the bonded atoms will not be excluded in pair-wise
|
|
interactions. :dd
|
|
|
|
{Molecule template for create_atoms has multiple molecules} :dt
|
|
|
|
The create_atoms command will only create molecules of a single type,
|
|
i.e. the first molecule in the template. :dd
|
|
|
|
{Molecule template for fix deposit has multiple molecules} :dt
|
|
|
|
The fix deposit command will only create molecules of a single type,
|
|
i.e. the first molecule in the template. :dd
|
|
|
|
{Molecule template for fix pour has multiple molecules} :dt
|
|
|
|
The fix pour command will only create molecules of a single type,
|
|
i.e. the first molecule in the template. :dd
|
|
|
|
{Molecule template for fix rigid/small has multiple molecules} :dt
|
|
|
|
The fix rigid/small command will only recoginze molecules of a single
|
|
type, i.e. the first molecule in the template. :dd
|
|
|
|
{Molecule template for fix shake has multiple molecules} :dt
|
|
|
|
The fix shake command will only recoginze molecules of a single
|
|
type, i.e. the first molecule in the template. :dd
|
|
|
|
{More than one compute centro/atom} :dt
|
|
|
|
It is not efficient to use compute centro/atom more than once. :dd
|
|
|
|
{More than one compute cluster/atom} :dt
|
|
|
|
It is not efficient to use compute cluster/atom more than once. :dd
|
|
|
|
{More than one compute cna/atom defined} :dt
|
|
|
|
It is not efficient to use compute cna/atom more than once. :dd
|
|
|
|
{More than one compute contact/atom} :dt
|
|
|
|
It is not efficient to use compute contact/atom more than once. :dd
|
|
|
|
{More than one compute coord/atom} :dt
|
|
|
|
It is not efficient to use compute coord/atom more than once. :dd
|
|
|
|
{More than one compute damage/atom} :dt
|
|
|
|
It is not efficient to use compute ke/atom more than once. :dd
|
|
|
|
{More than one compute erotate/sphere/atom} :dt
|
|
|
|
It is not efficient to use compute erorate/sphere/atom more than once. :dd
|
|
|
|
{More than one compute ke/atom} :dt
|
|
|
|
It is not efficient to use compute ke/atom more than once. :dd
|
|
|
|
{More than one compute voronoi/atom command} :dt
|
|
|
|
It is not efficient to use compute voronoi/atom more than once. :dd
|
|
|
|
{More than one fix poems} :dt
|
|
|
|
It is not efficient to use fix poems more than once. :dd
|
|
|
|
{More than one fix rigid} :dt
|
|
|
|
It is not efficient to use fix rigid more than once. :dd
|
|
|
|
{Neighbor exclusions used with KSpace solver may give inconsistent Coulombic energies} :dt
|
|
|
|
This is because excluding specific pair interactions also excludes
|
|
them from long-range interactions which may not be the desired effect.
|
|
The special_bonds command handles this consistently by insuring
|
|
excluded (or weighted) 1-2, 1-3, 1-4 interactions are treated
|
|
consistently by both the short-range pair style and the long-range
|
|
solver. This is not done for exclusions of charged atom pairs via the
|
|
neigh_modify exclude command. :dd
|
|
|
|
{New thermo_style command, previous thermo_modify settings will be lost} :dt
|
|
|
|
If a thermo_style command is used after a thermo_modify command, the
|
|
settings changed by the thermo_modify command will be reset to their
|
|
default values. This is because the thermo_modify commmand acts on
|
|
the currently defined thermo style, and a thermo_style command creates
|
|
a new style. :dd
|
|
|
|
{No Kspace calculation with verlet/split} :dt
|
|
|
|
The 2nd partition performs a kspace calculation so the kspace_style
|
|
command must be used. :dd
|
|
|
|
{No fixes defined, atoms won't move} :dt
|
|
|
|
If you are not using a fix like nve, nvt, npt then atom velocities and
|
|
coordinates will not be updated during timestepping. :dd
|
|
|
|
{No joints between rigid bodies, use fix rigid instead} :dt
|
|
|
|
The bodies defined by fix poems are not connected by joints. POEMS
|
|
will integrate the body motion, but it would be more efficient to use
|
|
fix rigid. :dd
|
|
|
|
{Not using real units with pair reax} :dt
|
|
|
|
This is most likely an error, unless you have created your own ReaxFF
|
|
parameter file in a different set of units. :dd
|
|
|
|
{Number of MSM mesh points changed to be a multiple of 2} :dt
|
|
|
|
MSM requires that the number of grid points in each direction be a multiple
|
|
of two and the number of grid points in one or more directions have been
|
|
adjusted to meet this requirement. :dd
|
|
|
|
{OMP_NUM_THREADS environment is not set.} :dt
|
|
|
|
This environment variable must be set appropriately to use the
|
|
USER-OMP pacakge. :dd
|
|
|
|
{One or more atoms are time integrated more than once} :dt
|
|
|
|
This is probably an error since you typically do not want to
|
|
advance the positions or velocities of an atom more than once
|
|
per timestep. :dd
|
|
|
|
{One or more compute molecules has atoms not in group} :dt
|
|
|
|
The group used in a compute command that operates on moleclues does
|
|
not include all the atoms in some molecules. This is probably not
|
|
what you want. :dd
|
|
|
|
{One or more respa levels compute no forces} :dt
|
|
|
|
This is computationally inefficient. :dd
|
|
|
|
{Pair COMB charge %.10f with force %.10f hit max barrier} :dt
|
|
|
|
Something is possibly wrong with your model. :dd
|
|
|
|
{Pair COMB charge %.10f with force %.10f hit min barrier} :dt
|
|
|
|
Something is possibly wrong with your model. :dd
|
|
|
|
{Pair brownian needs newton pair on for momentum conservation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair dpd needs newton pair on for momentum conservation} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Pair dsmc: num_of_collisions > number_of_A} :dt
|
|
|
|
Collision model in DSMC is breaking down. :dd
|
|
|
|
{Pair dsmc: num_of_collisions > number_of_B} :dt
|
|
|
|
Collision model in DSMC is breaking down. :dd
|
|
|
|
{Particle deposition was unsuccessful} :dt
|
|
|
|
The fix deposit command was not able to insert as many atoms as
|
|
needed. The requested volume fraction may be too high, or other atoms
|
|
may be in the insertion region. :dd
|
|
|
|
{Reducing PPPM order b/c stencil extends beyond nearest neighbor processor} :dt
|
|
|
|
This may lead to a larger grid than desired. See the kspace_modify overlap
|
|
command to prevent changing of the PPPM order. :dd
|
|
|
|
{Reducing PPPM order b/c stencil extends beyond neighbor processor} :dt
|
|
|
|
This may lead to a larger grid than desired. See the kspace_modify overlap
|
|
command to prevent changing of the PPPM order. :dd
|
|
|
|
{Reducing PPPMDisp Coulomb order b/c stencil extends beyond neighbor processor} :dt
|
|
|
|
This may lead to a larger grid than desired. See the kspace_modify overlap
|
|
command to prevent changing of the PPPM order. :dd
|
|
|
|
{Reducing PPPMDisp dispersion order b/c stencil extends beyond neighbor processor} :dt
|
|
|
|
This may lead to a larger grid than desired. See the kspace_modify overlap
|
|
command to prevent changing of the PPPM order. :dd
|
|
|
|
{Replacing a fix, but new group != old group} :dt
|
|
|
|
The ID and style of a fix match for a fix you are changing with a fix
|
|
command, but the new group you are specifying does not match the old
|
|
group. :dd
|
|
|
|
{Replicating in a non-periodic dimension} :dt
|
|
|
|
The parameters for a replicate command will cause a non-periodic
|
|
dimension to be replicated; this may cause unwanted behavior. :dd
|
|
|
|
{Resetting reneighboring criteria during PRD} :dt
|
|
|
|
A PRD simulation requires that neigh_modify settings be delay = 0,
|
|
every = 1, check = yes. Since these settings were not in place,
|
|
LAMMPS changed them and will restore them to their original values
|
|
after the PRD simulation. :dd
|
|
|
|
{Resetting reneighboring criteria during TAD} :dt
|
|
|
|
A TAD simulation requires that neigh_modify settings be delay = 0,
|
|
every = 1, check = yes. Since these settings were not in place,
|
|
LAMMPS changed them and will restore them to their original values
|
|
after the PRD simulation. :dd
|
|
|
|
{Resetting reneighboring criteria during minimization} :dt
|
|
|
|
Minimization requires that neigh_modify settings be delay = 0, every =
|
|
1, check = yes. Since these settings were not in place, LAMMPS
|
|
changed them and will restore them to their original values after the
|
|
minimization. :dd
|
|
|
|
{Restart file used different # of processors} :dt
|
|
|
|
The restart file was written out by a LAMMPS simulation running on a
|
|
different number of processors. Due to round-off, the trajectories of
|
|
your restarted simulation may diverge a little more quickly than if
|
|
you ran on the same # of processors. :dd
|
|
|
|
{Restart file used different 3d processor grid} :dt
|
|
|
|
The restart file was written out by a LAMMPS simulation running on a
|
|
different 3d grid of processors. Due to round-off, the trajectories
|
|
of your restarted simulation may diverge a little more quickly than if
|
|
you ran on the same # of processors. :dd
|
|
|
|
{Restart file used different boundary settings, using restart file values} :dt
|
|
|
|
Your input script cannot change these restart file settings. :dd
|
|
|
|
{Restart file used different newton bond setting, using restart file value} :dt
|
|
|
|
The restart file value will override the setting in the input script. :dd
|
|
|
|
{Restart file used different newton pair setting, using input script value} :dt
|
|
|
|
The input script value will override the setting in the restart file. :dd
|
|
|
|
{Restrain problem: %d %ld %d %d %d %d} :dt
|
|
|
|
Conformation of the 4 listed dihedral atoms is extreme; you may want
|
|
to check your simulation geometry. :dd
|
|
|
|
{Running PRD with only one replica} :dt
|
|
|
|
This is allowed, but you will get no parallel speed-up. :dd
|
|
|
|
{SRD bin shifting turned on due to small lamda} :dt
|
|
|
|
This is done to try to preserve accuracy. :dd
|
|
|
|
{SRD bin size for fix srd differs from user request} :dt
|
|
|
|
Fix SRD had to adjust the bin size to fit the simulation box. See the
|
|
cubic keyword if you want this message to be an error vs warning. :dd
|
|
|
|
{SRD bins for fix srd are not cubic enough} :dt
|
|
|
|
The bin shape is not within tolerance of cubic. See the cubic
|
|
keyword if you want this message to be an error vs warning. :dd
|
|
|
|
{SRD particle %d started inside big particle %d on step %ld bounce %d} :dt
|
|
|
|
See the inside keyword if you want this message to be an error vs
|
|
warning. :dd
|
|
|
|
{Shake determinant < 0.0} :dt
|
|
|
|
The determinant of the quadratic equation being solved for a single
|
|
cluster specified by the fix shake command is numerically suspect. LAMMPS
|
|
will set it to 0.0 and continue. :dd
|
|
|
|
{Should not allow rigid bodies to bounce off relecting walls} :dt
|
|
|
|
LAMMPS allows this, but their dynamics are not computed correctly. :dd
|
|
|
|
{Should not use fix nve/limit with fix shake} :dt
|
|
|
|
This will lead to invalid constraint forces in the SHAKE computation. :dd
|
|
|
|
{Simulations might be very slow because of large number of structure factors} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Slab correction not needed for MSM} :dt
|
|
|
|
Slab correction is intended to be used with Ewald or PPPM and is not needed by MSM. :dd
|
|
|
|
{System is not charge neutral, net charge = %g} :dt
|
|
|
|
The total charge on all atoms on the system is not 0.0, which
|
|
is not valid for the long-range Coulombic solvers. :dd
|
|
|
|
{Table inner cutoff >= outer cutoff} :dt
|
|
|
|
You specified an inner cutoff for a Coulombic table that is longer
|
|
than the global cutoff. Probably not what you wanted. :dd
|
|
|
|
{Temperature for MSST is not for group all} :dt
|
|
|
|
User-assigned temperature to MSST fix does not compute temperature for
|
|
all atoms. Since MSST computes a global pressure, the kinetic energy
|
|
contribution from the temperature is assumed to also be for all atoms.
|
|
Thus the pressure used by MSST could be inaccurate. :dd
|
|
|
|
{Temperature for NPT is not for group all} :dt
|
|
|
|
User-assigned temperature to NPT fix does not compute temperature for
|
|
all atoms. Since NPT computes a global pressure, the kinetic energy
|
|
contribution from the temperature is assumed to also be for all atoms.
|
|
Thus the pressure used by NPT could be inaccurate. :dd
|
|
|
|
{Temperature for fix modify is not for group all} :dt
|
|
|
|
The temperature compute is being used with a pressure calculation
|
|
which does operate on group all, so this may be inconsistent. :dd
|
|
|
|
{Temperature for thermo pressure is not for group all} :dt
|
|
|
|
User-assigned temperature to thermo via the thermo_modify command does
|
|
not compute temperature for all atoms. Since thermo computes a global
|
|
pressure, the kinetic energy contribution from the temperature is
|
|
assumed to also be for all atoms. Thus the pressure printed by thermo
|
|
could be inaccurate. :dd
|
|
|
|
{The minimizer does not re-orient dipoles when using fix efield} :dt
|
|
|
|
This means that only the atom coordinates will be minimized,
|
|
not the orientation of the dipoles. :dd
|
|
|
|
{Too many common neighbors in CNA %d times} :dt
|
|
|
|
More than the maximum # of neighbors was found multiple times. This
|
|
was unexpected. :dd
|
|
|
|
{Too many inner timesteps in fix ttm} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Too many neighbors in CNA for %d atoms} :dt
|
|
|
|
More than the maximum # of neighbors was found multiple times. This
|
|
was unexpected. :dd
|
|
|
|
{Triclinic box skew is large} :dt
|
|
|
|
The displacement in a skewed direction is normally required to be less
|
|
than half the box length in that dimension. E.g. the xy tilt must be
|
|
between -half and +half of the x box length. You have relaxed the
|
|
constraint using the box tilt command, but the warning means that a
|
|
LAMMPS simulation may be inefficient as a result. :dd
|
|
|
|
{Use special bonds = 0,1,1 with bond style fene} :dt
|
|
|
|
Most FENE models need this setting for the special_bonds command. :dd
|
|
|
|
{Use special bonds = 0,1,1 with bond style fene/expand} :dt
|
|
|
|
Most FENE models need this setting for the special_bonds command. :dd
|
|
|
|
{Using a manybody potential with bonds/angles/dihedrals and special_bond exclusions} :dt
|
|
|
|
This is likely not what you want to do. The exclusion settings will
|
|
eliminate neighbors in the neighbor list, which the manybody potential
|
|
needs to calculated its terms correctly. :dd
|
|
|
|
{Using compute temp/deform with inconsistent fix deform remap option} :dt
|
|
|
|
Fix nvt/sllod assumes deforming atoms have a velocity profile provided
|
|
by "remap v" or "remap none" as a fix deform option. :dd
|
|
|
|
{Using compute temp/deform with no fix deform defined} :dt
|
|
|
|
This is probably an error, since it makes little sense to use
|
|
compute temp/deform in this case. :dd
|
|
|
|
{Using fix srd with box deformation but no SRD thermostat} :dt
|
|
|
|
The deformation will heat the SRD particles so this can
|
|
be dangerous. :dd
|
|
|
|
{Using largest cut-off for lj/long/dipole/long long long} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Using largest cutoff for buck/long/coul/long} :dt
|
|
|
|
Self-exlanatory. :dd
|
|
|
|
{Using largest cutoff for lj/long/coul/long} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Using largest cutoff for pair_style lj/long/tip4p/long} :dt
|
|
|
|
Self-explanatory. :dd
|
|
|
|
{Using pair tail corrections with nonperiodic system} :dt
|
|
|
|
This is probably a bogus thing to do, since tail corrections are
|
|
computed by integrating the density of a periodic system out to
|
|
infinity. :dd
|
|
|
|
:dle
|
|
|