lammps/tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README_run.sh

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# --- Running LAMMPS ---
# -- Prerequisites: --
# The 2 files "run.in.npt", and "run.in.nvt" are LAMMPS
# input scripts which link to the input scripts and data files
# you hopefully have created earlier with moltemplate.sh:
# system.in.init, system.in.settings, system.data, system.in.sw
# If not, carry out the instructions in "README_setup.sh".
#
# -- Instructions: --
# If "lmp_linux" is the name of the command you use to invoke lammps,
# then you would run lammps on these files this way:
lmp_linux -i run.in.npt # minimization and simulation at constant pressure
lmp_linux -i run.in.nvt # minimization and simulation at constant volume
#(Note: The constant volume simulation lacks pressure equilibration. These are
# completely separate simulations. The results of the constant pressure
# simulation are ignored when beginning the simulation at constant volume.
# This can be fixed. Read "run.in.nvt" for equilibration instructions.)
# If you have compiled the MPI version of lammps, you can run lammps in parallel
#mpirun -np 4 lmp_linux -i run.in.npt
#mpirun -np 4 lmp_linux -i run.in.nvt
# (assuming you have 4 processors available)