forked from lijiext/lammps
136 lines
5.3 KiB
C++
136 lines
5.3 KiB
C++
/***************************************************************************
|
|
charmm_long_ext.cpp
|
|
-------------------
|
|
W. Michael Brown (ORNL)
|
|
|
|
Functions for LAMMPS access to charmm/coul/long acceleration routines.
|
|
|
|
__________________________________________________________________________
|
|
This file is part of the LAMMPS Accelerator Library (LAMMPS_AL)
|
|
__________________________________________________________________________
|
|
|
|
begin :
|
|
email : brownw@ornl.gov
|
|
***************************************************************************/
|
|
|
|
#include <iostream>
|
|
#include <cassert>
|
|
#include <math.h>
|
|
|
|
#include "lal_charmm_long.h"
|
|
|
|
using namespace std;
|
|
using namespace LAMMPS_AL;
|
|
|
|
static CHARMMLong<PRECISION,ACC_PRECISION> CRMLMF;
|
|
|
|
// ---------------------------------------------------------------------------
|
|
// Allocate memory on host and device and copy constants to device
|
|
// ---------------------------------------------------------------------------
|
|
int crml_gpu_init(const int ntypes, double cut_bothsq, double **host_lj1,
|
|
double **host_lj2, double **host_lj3, double **host_lj4,
|
|
double **offset, double *special_lj, const int inum,
|
|
const int nall, const int max_nbors, const int maxspecial,
|
|
const double cell_size, int &gpu_mode, FILE *screen,
|
|
double host_cut_ljsq, double host_cut_coulsq,
|
|
double *host_special_coul, const double qqrd2e,
|
|
const double g_ewald, const double cut_lj_innersq,
|
|
const double denom_lj, double **epsilon,
|
|
double **sigma, const bool mix_arithmetic) {
|
|
CRMLMF.clear();
|
|
gpu_mode=CRMLMF.device->gpu_mode();
|
|
double gpu_split=CRMLMF.device->particle_split();
|
|
int first_gpu=CRMLMF.device->first_device();
|
|
int last_gpu=CRMLMF.device->last_device();
|
|
int world_me=CRMLMF.device->world_me();
|
|
int gpu_rank=CRMLMF.device->gpu_rank();
|
|
int procs_per_gpu=CRMLMF.device->procs_per_gpu();
|
|
|
|
CRMLMF.device->init_message(screen,"lj/charmm/coul/long",first_gpu,last_gpu);
|
|
|
|
bool message=false;
|
|
if (CRMLMF.device->replica_me()==0 && screen)
|
|
message=true;
|
|
|
|
if (message) {
|
|
fprintf(screen,"Initializing GPU and compiling on process 0...");
|
|
fflush(screen);
|
|
}
|
|
|
|
int init_ok=0;
|
|
if (world_me==0)
|
|
CRMLMF.init(ntypes, cut_bothsq, host_lj1, host_lj2, host_lj3, host_lj4,
|
|
offset, special_lj, inum, nall, 300, maxspecial, cell_size,
|
|
gpu_split, screen, host_cut_ljsq, host_cut_coulsq,
|
|
host_special_coul, qqrd2e, g_ewald, cut_lj_innersq, denom_lj,
|
|
epsilon,sigma,mix_arithmetic);
|
|
|
|
CRMLMF.device->world_barrier();
|
|
if (message)
|
|
fprintf(screen,"Done.\n");
|
|
|
|
for (int i=0; i<procs_per_gpu; i++) {
|
|
if (message) {
|
|
if (last_gpu-first_gpu==0)
|
|
fprintf(screen,"Initializing GPU %d on core %d...",first_gpu,i);
|
|
else
|
|
fprintf(screen,"Initializing GPUs %d-%d on core %d...",first_gpu,
|
|
last_gpu,i);
|
|
fflush(screen);
|
|
}
|
|
if (gpu_rank==i && world_me!=0)
|
|
init_ok=CRMLMF.init(ntypes, cut_bothsq, host_lj1, host_lj2, host_lj3,
|
|
host_lj4, offset, special_lj, inum, nall, 300,
|
|
maxspecial, cell_size, gpu_split, screen,
|
|
host_cut_ljsq, host_cut_coulsq, host_special_coul,
|
|
qqrd2e, g_ewald, cut_lj_innersq, denom_lj, epsilon,
|
|
sigma, mix_arithmetic);
|
|
|
|
CRMLMF.device->gpu_barrier();
|
|
if (message)
|
|
fprintf(screen,"Done.\n");
|
|
}
|
|
if (message)
|
|
fprintf(screen,"\n");
|
|
|
|
if (init_ok==0)
|
|
CRMLMF.estimate_gpu_overhead();
|
|
return init_ok;
|
|
}
|
|
|
|
void crml_gpu_clear() {
|
|
CRMLMF.clear();
|
|
}
|
|
|
|
int** crml_gpu_compute_n(const int ago, const int inum_full,
|
|
const int nall, double **host_x, int *host_type,
|
|
double *sublo, double *subhi, tagint *tag, int **nspecial,
|
|
tagint **special, const bool eflag, const bool vflag,
|
|
const bool eatom, const bool vatom, int &host_start,
|
|
int **ilist, int **jnum, const double cpu_time,
|
|
bool &success, double *host_q, double *boxlo,
|
|
double *prd) {
|
|
return CRMLMF.compute(ago, inum_full, nall, host_x, host_type, sublo,
|
|
subhi, tag, nspecial, special, eflag, vflag, eatom,
|
|
vatom, host_start, ilist, jnum, cpu_time, success,
|
|
host_q, boxlo, prd);
|
|
}
|
|
|
|
void crml_gpu_compute(const int ago, const int inum_full,
|
|
const int nall, double **host_x, int *host_type,
|
|
int *ilist, int *numj, int **firstneigh,
|
|
const bool eflag, const bool vflag, const bool eatom,
|
|
const bool vatom, int &host_start, const double cpu_time,
|
|
bool &success, double *host_q, const int nlocal,
|
|
double *boxlo, double *prd) {
|
|
CRMLMF.compute(ago,inum_full,nall,host_x,host_type,ilist,numj,firstneigh,
|
|
eflag,vflag,eatom,vatom,host_start,cpu_time,success,host_q,
|
|
nlocal,boxlo,prd);
|
|
}
|
|
|
|
double crml_gpu_bytes() {
|
|
return CRMLMF.host_memory_usage();
|
|
}
|
|
|
|
|