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243 lines
10 KiB
Plaintext
243 lines
10 KiB
Plaintext
"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
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:link(lws,http://lammps.sandia.gov)
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:link(ld,Manual.html)
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:link(lc,Section_commands.html#comm)
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:line
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pair_style hybrid command :h3
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pair_style hybrid/overlay command :h3
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[Syntax:]
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pair_style hybrid style1 args style2 args ...
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pair_style hybrid/overlay style1 args style2 args ... :pre
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style1,style2 = list of one or more pair styles and their arguments :ul
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[Examples:]
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pair_style hybrid lj/cut/coul/cut 10.0 eam lj/cut 5.0
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pair_coeff 1*2 1*2 eam niu3
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pair_coeff 3 3 lj/cut/coul/cut 1.0 1.0
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pair_coeff 1*2 3 lj/cut 0.5 1.2 :pre
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pair_style hybrid/overlay lj/cut 2.5 coul/long 2.0
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pair_coeff * * lj/cut 1.0 1.0
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pair_coeff * * coul/long :pre
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[Description:]
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The {hybrid} and {hybrid/overlay} styles enable the use of multiple
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pair styles in one simulation. With the {hybrid} style, exactly one
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pair style is assigned to each pair of atom types. With the
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{hybrid/overlay} style, one or more pair styles can be assigned to
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each pair of atom types. The assignment of pair styles to type pairs
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is made via the "pair_coeff"_pair_coeff.html command.
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Here are two examples of hybrid simulations. The {hybrid} style could
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be used for a simulation of a metal droplet on a LJ surface. The
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metal atoms interact with each other via an {eam} potential, the
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surface atoms interact with each other via a {lj/cut} potential, and
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the metal/surface interaction is also computed via a {lj/cut}
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potential. The {hybrid/overlay} style could be used as in the 2nd
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example above, where multiple potentials are superposed in an additive
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fashion to compute the interaction between atoms. In this example,
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using {lj/cut} and {coul/long} together gives the same result as if
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the {lj/cut/coul/long} potential were used by itself. In this case,
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it would be more efficient to use the single combined potential, but
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in general any combination of pair potentials can be used together in
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to produce an interaction that is not encoded in any single pair_style
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file, e.g. adding Coulombic forces between granular particles.
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All pair styles that will be used are listed as "sub-styles" following
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the {hybrid} or {hybrid/overlay} keyword, in any order. Each
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sub-style's name is followed by its usual arguments, as illustrated in
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the example above. See the doc pages of individual pair styles for a
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listing and explanation of the appropriate arguments.
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The pair_coeff commands are also specified exactly as they would be
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for a simulation using only one pair style, with one additional
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argument. Following the I,J type specification, the first argument
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sets the pair sub-style. The remaining arguments are the coefficients
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appropriate to that style. For example, consider a simulation with 3
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atom types: types 1 and 2 are Ni atoms, type 3 are LJ atoms with
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charges. The following commands would set up a hybrid simulation:
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pair_style hybrid eam/alloy lj/cut/coul/cut 10.0 lj/cut 8.0
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pair_coeff * * eam/alloy nialhjea Ni Ni NULL
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pair_coeff 3 3 lj/cut/coul/cut 1.0 1.0
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pair_coeff 1*2 3 lj/cut 0.8 1.3 :pre
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Note that the pair_coeff command for {eam/alloy} includes a mapping
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specification of elements to all atom types, even those not assigned
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to the {eam/alloy} potential. The NULL keyword is used by many such
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potentials (eam/alloy, Tersoff, AIREBO, etc), to denote an atom type
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that will be assigned to a different sub-style.
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For the {hybrid} style, each atom type pair I,J is assigned to exactly
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one sub-style. Just as with a simulation using a single pair style,
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if you specify the same atom type pair in a second pair_coeff command,
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the previous assignment will be overwritten.
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For the {hybrid/overlay} style, each atom type pair I,J can be
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assigned to one or more sub-styles. If you specify the same atom type
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pair in a second pair_coeff command with a new sub-style, then the
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second sub-style is added to the list of potentials that will be
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calculated for two interacting atoms of those types. If you specify
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the same atom type pair in a second pair_coeff command with a
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sub-style that has already been defined for that pair of atoms, then
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the new pair coefficients simply override the previous ones, as in the
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normal usage of the pair_coeff command. E.g. these two sets of
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commands are the same:
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pair_style lj/cut 2.5
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pair_coeff * * 1.0 1.0
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pair_coeff 2 2 1.5 0.8 :pre
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pair_style hybrid/overlay lj/cut 2.5
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pair_coeff * * lj/cut 1.0 1.0
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pair_coeff 2 2 lj/cut 1.5 0.8 :pre
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Coefficients must be defined for each pair of atoms types via the
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"pair_coeff"_pair_coeff.html command as described above, or in the
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data file or restart files read by the "read_data"_read_data.html or
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"read_restart"_read_restart.html commands, or by mixing as described
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below.
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For both the {hybrid} and {hybrid/overlay} styles, every atom type
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pair I,J (where I <= J) must be assigned to at least one sub-style via
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the "pair_coeff"_pair_coeff.html command as in the examples above, or
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in the data file read by the "read_data"_read_data.html, or by mixing
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as described below.
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If you want there to be no interactions between a particular pair of
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atom types, you have 3 choices. You can assign the type pair to some
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sub-style and use the "neigh_modify exclude type"_neigh_modify.html
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command. You can assign it to some sub-style and set the coefficients
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so that there is effectively no interaction (e.g. epsilon = 0.0 in a
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LJ potential). Or, for {hybrid} and {hybrid/overlay} simulations, you
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can use this form of the pair_coeff command:
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pair_coeff 2 3 none :pre
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If an assignment to {none} is made in a simulation with the
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{hybrid/overlay} pair style, it wipes out all previous assignments of
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that atom type pair to sub-styles.
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Note that you may need to use an "atom_style"_atom_style.html hybrid
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command in your input script, if atoms in the simulation will need
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attributes from several atom styles, due to using multiple pair
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potentials.
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:line
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The potential energy contribution to the overall system due to an
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individual sub-style can be accessed and output via the "compute
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pair"_compute_pair.html command.
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:line
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IMPORTANT: Several of the potentials defined via the pair_style
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command in LAMMPS are really many-body potentials, such as Tersoff,
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AIREBO, MEAM, ReaxFF, etc. The way to think about using these
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potentials in a hybrid setting is as follows.
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A subset of atom types is assigned to the many-body potential with a
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single "pair_coeff"_pair_coeff.html command, using "* *" to include
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all types and the NULL keywords described above to exclude specific
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types not assigned to that potential. If types 1,3,4 were assigned in
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that way (but not type 2), this means that all many-body interactions
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between all atoms of types 1,3,4 will be computed by that potential.
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Pair_style hybrid allows interactions between type pairs 2-2, 1-2,
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2-3, 2-4 to be specified for computation by other pair styles. You
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could even add a second interaction for 1-1 to be computed by another
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pair style, assuming pair_style hybrid/overlay is used.
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But you should not, as a general rule, attempt to exclude the
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many-body interactions for some subset of the type pairs within the
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set of 1,3,4 interactions, e.g. exclude 1-1 or 1-3 interactions. That
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is not conceptually well-defined for many-body interactions, since the
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potential will typically calculate energies and foces for small groups
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of atoms, e.g. 3 or 4 atoms, using the neighbor lists of the atoms to
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find the additional atoms in the group. It is typically non-physical
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to think of excluding an interaction between a particular pair of
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atoms when the potential computes 3-body or 4-body interactions.
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However, you can still use the pair_coeff none setting or the
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"neigh_modify exclude"_neigh_modify.html command to exclude certain
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type pairs from the neighbor list that will be passed to a manybody
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sub-style. This will alter the calculations made by a many-body
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potential, since it builds its list of 3-body, 4-body, etc
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interactions from the pair list. You will need to think carefully as
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to whether it produces a physically meaningful result for your model.
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For example, imagine you have two atom types in your model, type 1 for
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atoms in one surface, and type 2 for atoms in the other, and you wish
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to use a Tersoff potential to compute interactions within each
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surface, but not between surfaces. Then either of these two command
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sequences would implement that model:
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pair_style hybrid tersoff
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pair_coeff * * tersoff SiC.tersoff C C
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pair_coeff 1 2 none :pre
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pair_style tersoff
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pair_coeff * * SiC.tersoff C C
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neigh_modify exclude type 1 2 :pre
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Either way, only neighbor lists with 1-1 or 2-2 interactions would be
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passed to the Tersoff potential, which means it would compute no
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3-body interactions containing both type 1 and 2 atoms.
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:line
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[Mixing, shift, table, tail correction, restart, rRESPA info]:
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Any pair potential settings made via the
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"pair_modify"_pair_modify.html command are passed along to all
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sub-styles of the hybrid potential.
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For atom type pairs I,J and I != J, if the sub-style assigned to I,I
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and J,J is the same, and if the sub-style allows for mixing, then the
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coefficients for I,J can be mixed. This means you do not have to
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specify a pair_coeff command for I,J since the I,J type pair will be
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assigned automatically to the I,I sub-style and its coefficients
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generated by the mixing rule used by that sub-style. For the
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{hybrid/overlay} style, there is an additional requirement that both
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the I,I and J,J pairs are assigned to a single sub-style. See the
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"pair_modify" command for details of mixing rules. See the See the
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doc page for the sub-style to see if allows for mixing.
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The hybrid pair styles supports the "pair_modify"_pair_modify.html
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shift, table, and tail options for an I,J pair interaction, if the
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associated sub-style supports it.
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For the hybrid pair styles, the list of sub-styles and their
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respective settings are written to "binary restart
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files"_restart.html, so a "pair_style"_pair_style.html command does
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not need to specified in an input script that reads a restart file.
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However, the coefficient information is not stored in the restart
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file. Thus, pair_coeff commands need to be re-specified in the
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restart input script.
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These pair styles support the use of the {inner}, {middle}, and
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{outer} keywords of the "run_style respa"_run_style.html command, if
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their sub-styles do.
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[Restrictions:]
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When using a long-range Coulombic solver (via the
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"kspace_style"_kspace_style.html command) with a hybrid pair_style,
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one or more sub-styles will be of the "long" variety,
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e.g. {lj/cut/coul/long} or {buck/coul/long}. You must insure that the
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short-range Coulombic cutoff used by each of these long pair styles is
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the same or else LAMMPS will generate an error.
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[Related commands:]
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"pair_coeff"_pair_coeff.html
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[Default:] none
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