forked from lijiext/lammps
82 lines
2.1 KiB
Plaintext
Executable File
82 lines
2.1 KiB
Plaintext
Executable File
package require psfgen
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topology top_all27_na.rtf
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pdbalias residue A ADE
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pdbalias residue T THY
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pdbalias residue G GUA
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pdbalias residue C CYT
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pdbalias atom ADE O3* O3'
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pdbalias atom THY O3* O3'
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pdbalias atom GUA O3* O3'
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pdbalias atom CYT O3* O3'
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pdbalias atom ADE O4* O4'
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pdbalias atom THY O4* O4'
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pdbalias atom GUA O4* O4'
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pdbalias atom CYT O4* O4'
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pdbalias atom ADE O5* O5'
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pdbalias atom THY O5* O5'
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pdbalias atom GUA O5* O5'
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pdbalias atom CYT O5* O5'
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pdbalias atom ADE C1* C1'
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pdbalias atom THY C1* C1'
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pdbalias atom GUA C1* C1'
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pdbalias atom CYT C1* C1'
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pdbalias atom ADE C2* C2'
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pdbalias atom THY C2* C2'
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pdbalias atom GUA C2* C2'
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pdbalias atom CYT C2* C2'
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pdbalias atom ADE C3* C3'
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pdbalias atom THY C3* C3'
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pdbalias atom GUA C3* C3'
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pdbalias atom CYT C3* C3'
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pdbalias atom ADE C4* C4'
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pdbalias atom THY C4* C4'
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pdbalias atom GUA C4* C4'
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pdbalias atom CYT C4* C4'
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pdbalias atom ADE C5* C5'
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pdbalias atom THY C5* C5'
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pdbalias atom GUA C5* C5'
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pdbalias atom CYT C5* C5'
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pdbalias atom ADE H1* H1'
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pdbalias atom THY H1* H1'
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pdbalias atom GUA H1* H1'
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pdbalias atom CYT H1* H1'
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pdbalias atom ADE H3* H3'
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pdbalias atom THY H3* H3'
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pdbalias atom GUA H3* H3'
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pdbalias atom CYT H3* H3'
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pdbalias atom ADE H4* H4'
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pdbalias atom THY H4* H4'
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pdbalias atom GUA H4* H4'
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pdbalias atom CYT H4* H4'
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pdbalias atom ADE 1H5* H5'
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pdbalias atom THY 1H5* H5'
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pdbalias atom GUA 1H5* H5'
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pdbalias atom CYT 1H5* H5'
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pdbalias atom ADE 2H5* H5''
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pdbalias atom THY 2H5* H5''
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pdbalias atom GUA 2H5* H5''
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pdbalias atom CYT 2H5* H5''
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pdbalias atom ADE 1H2* H2'
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pdbalias atom THY 1H2* H2'
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pdbalias atom GUA 1H2* H2'
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pdbalias atom CYT 1H2* H2'
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pdbalias atom ADE 2H2* H2''
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pdbalias atom THY 2H2* H2''
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pdbalias atom GUA 2H2* H2''
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pdbalias atom CYT 2H2* H2''
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pdbalias atom GUA 1H2 H21
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pdbalias atom GUA 2H2 H22
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pdbalias atom CYT 1H4 H41
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pdbalias atom CYT 2H4 H42
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pdbalias atom ADE 1H6 H61
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pdbalias atom ADE 2H6 H62
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pdbalias atom THY 1H5M H51
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pdbalias atom THY 2H5M H52
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pdbalias atom THY 3H5M H53
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segment A {pdb 1ac7_pared.pdb}
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coordpdb 1ac7_pared.pdb A
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guesscoord
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writepdb 1ac7.pdb
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writepsf charmm 1ac7.psf
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exit
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