forked from lijiext/lammps
357 lines
11 KiB
Plaintext
357 lines
11 KiB
Plaintext
// **************************************************************************
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// gayberne.cu
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// -------------------
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// W. Michael Brown (ORNL)
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//
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// Device code for Gay-Berne potential acceleration
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//
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// __________________________________________________________________________
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// This file is part of the LAMMPS Accelerator Library (LAMMPS_AL)
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// __________________________________________________________________________
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//
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// begin :
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// email : brownw@ornl.gov
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// ***************************************************************************/
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#ifdef NV_KERNEL
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#include "lal_ellipsoid_extra.h"
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#endif
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ucl_inline void compute_eta_torque(numtyp m[9],numtyp m2[9], const numtyp4 shape,
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numtyp ans[9])
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{
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numtyp den = m[3]*m[2]*m[7]-m[0]*m[5]*m[7]-
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m[2]*m[6]*m[4]+m[1]*m[6]*m[5]-
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m[3]*m[1]*m[8]+m[0]*m[4]*m[8];
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den = ucl_recip(den);
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ans[0] = shape.x*(m[5]*m[1]*m2[2]+(numtyp)2.0*m[4]*m[8]*m2[0]-
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m[4]*m2[2]*m[2]-(numtyp)2.0*m[5]*m2[0]*m[7]+
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m2[1]*m[2]*m[7]-m2[1]*m[1]*m[8]-
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m[3]*m[8]*m2[1]+m[6]*m[5]*m2[1]+
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m[3]*m2[2]*m[7]-m2[2]*m[6]*m[4])*den;
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ans[1] = shape.x*(m[2]*m2[0]*m[7]-m[8]*m2[0]*m[1]+
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(numtyp)2.0*m[0]*m[8]*m2[1]-m[0]*m2[2]*m[5]-
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(numtyp)2.0*m[6]*m[2]*m2[1]+m2[2]*m[3]*m[2]-
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m[8]*m[3]*m2[0]+m[6]*m2[0]*m[5]+
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m[6]*m2[2]*m[1]-m2[2]*m[0]*m[7])*den;
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ans[2] = shape.x*(m[1]*m[5]*m2[0]-m[2]*m2[0]*m[4]-
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m[0]*m[5]*m2[1]+m[3]*m[2]*m2[1]-
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m2[1]*m[0]*m[7]-m[6]*m[4]*m2[0]+
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(numtyp)2.0*m[4]*m[0]*m2[2]-(numtyp)2.0*m[3]*m2[2]*m[1]+
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m[3]*m[7]*m2[0]+m[6]*m2[1]*m[1])*den;
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ans[3] = shape.y*(-m[4]*m2[5]*m[2]+(numtyp)2.0*m[4]*m[8]*m2[3]+
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m[5]*m[1]*m2[5]-(numtyp)2.0*m[5]*m2[3]*m[7]+
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m2[4]*m[2]*m[7]-m2[4]*m[1]*m[8]-
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m[3]*m[8]*m2[4]+m[6]*m[5]*m2[4]-
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m2[5]*m[6]*m[4]+m[3]*m2[5]*m[7])*den;
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ans[4] = shape.y*(m[2]*m2[3]*m[7]-m[1]*m[8]*m2[3]+
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(numtyp)2.0*m[8]*m[0]*m2[4]-m2[5]*m[0]*m[5]-
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(numtyp)2.0*m[6]*m2[4]*m[2]-m[3]*m[8]*m2[3]+
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m[6]*m[5]*m2[3]+m[3]*m2[5]*m[2]-
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m[0]*m2[5]*m[7]+m2[5]*m[1]*m[6])*den;
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ans[5] = shape.y*(m[1]*m[5]*m2[3]-m[2]*m2[3]*m[4]-
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m[0]*m[5]*m2[4]+m[3]*m[2]*m2[4]+
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(numtyp)2.0*m[4]*m[0]*m2[5]-m[0]*m2[4]*m[7]+
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m[1]*m[6]*m2[4]-m2[3]*m[6]*m[4]-
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(numtyp)2.0*m[3]*m[1]*m2[5]+m[3]*m2[3]*m[7])*den;
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ans[6] = shape.z*(-m[4]*m[2]*m2[8]+m[1]*m[5]*m2[8]+
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(numtyp)2.0*m[4]*m2[6]*m[8]-m[1]*m2[7]*m[8]+
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m[2]*m[7]*m2[7]-(numtyp)2.0*m2[6]*m[7]*m[5]-
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m[3]*m2[7]*m[8]+m[5]*m[6]*m2[7]-
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m[4]*m[6]*m2[8]+m[7]*m[3]*m2[8])*den;
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ans[7] = shape.z*-(m[1]*m[8]*m2[6]-m[2]*m2[6]*m[7]-
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(numtyp)2.0*m2[7]*m[0]*m[8]+m[5]*m2[8]*m[0]+
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(numtyp)2.0*m2[7]*m[2]*m[6]+m[3]*m2[6]*m[8]-
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m[3]*m[2]*m2[8]-m[5]*m[6]*m2[6]+
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m[0]*m2[8]*m[7]-m2[8]*m[1]*m[6])*den;
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ans[8] = shape.z*(m[1]*m[5]*m2[6]-m[2]*m2[6]*m[4]-
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m[0]*m[5]*m2[7]+m[3]*m[2]*m2[7]-
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m[4]*m[6]*m2[6]-m[7]*m2[7]*m[0]+
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(numtyp)2.0*m[4]*m2[8]*m[0]+m[7]*m[3]*m2[6]+
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m[6]*m[1]*m2[7]-(numtyp)2.0*m2[8]*m[3]*m[1])*den;
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}
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__kernel void kernel_ellipsoid(__global numtyp4* x_,__global numtyp4 *q,
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__global numtyp4* shape, __global numtyp4* well,
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__global numtyp *gum, __global numtyp2* sig_eps,
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const int ntypes, __global numtyp *lshape,
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__global int *dev_nbor, const int stride,
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__global acctyp4 *ans, const int astride,
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__global acctyp *engv, __global int *err_flag,
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const int eflag, const int vflag, const int inum,
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const int t_per_atom) {
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int tid, ii, offset;
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atom_info(t_per_atom,ii,tid,offset);
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__local numtyp sp_lj[4];
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sp_lj[0]=gum[3];
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sp_lj[1]=gum[4];
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sp_lj[2]=gum[5];
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sp_lj[3]=gum[6];
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acctyp energy=(acctyp)0;
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acctyp4 f;
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f.x=(acctyp)0;
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f.y=(acctyp)0;
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f.z=(acctyp)0;
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acctyp4 tor;
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tor.x=(acctyp)0;
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tor.y=(acctyp)0;
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tor.z=(acctyp)0;
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acctyp virial[6];
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for (int i=0; i<6; i++)
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virial[i]=(acctyp)0;
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if (ii<inum) {
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__global int *nbor, *nbor_end;
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int i, numj, n_stride;
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nbor_info_e(dev_nbor,stride,t_per_atom,ii,offset,i,numj,
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n_stride,nbor_end,nbor);
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numtyp4 ix=x_[i];
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int itype=ix.w;
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numtyp a1[9], b1[9], g1[9];
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numtyp4 ishape=shape[itype];
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{
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numtyp t[9];
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gpu_quat_to_mat_trans(q,i,a1);
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gpu_diag_times3(ishape,a1,t);
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gpu_transpose_times3(a1,t,g1);
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gpu_diag_times3(well[itype],a1,t);
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gpu_transpose_times3(a1,t,b1);
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}
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numtyp factor_lj;
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for ( ; nbor<nbor_end; nbor+=n_stride) {
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int j=*nbor;
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factor_lj = sp_lj[sbmask(j)];
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j &= NEIGHMASK;
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numtyp4 jx=x_[j];
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int jtype=jx.w;
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// Compute r12
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numtyp r12[3];
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r12[0] = jx.x-ix.x;
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r12[1] = jx.y-ix.y;
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r12[2] = jx.z-ix.z;
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numtyp ir = gpu_dot3(r12,r12);
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ir = ucl_rsqrt(ir);
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numtyp r = ucl_recip(ir);
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numtyp a2[9];
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gpu_quat_to_mat_trans(q,j,a2);
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numtyp u_r, dUr[3], tUr[3], eta, teta[3];
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{ // Compute U_r, dUr, eta, and teta
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// Compute g12
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numtyp g12[9];
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{
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numtyp g2[9];
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{
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gpu_diag_times3(shape[jtype],a2,g12);
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gpu_transpose_times3(a2,g12,g2);
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gpu_plus3(g1,g2,g12);
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}
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{ // Compute U_r and dUr
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// Compute kappa
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numtyp kappa[3];
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gpu_mldivide3(g12,r12,kappa,err_flag);
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// -- replace r12 with r12 hat
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r12[0]*=ir;
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r12[1]*=ir;
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r12[2]*=ir;
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// -- kappa is now / r
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kappa[0]*=ir;
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kappa[1]*=ir;
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kappa[2]*=ir;
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// energy
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// compute u_r and dUr
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numtyp uslj_rsq;
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{
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// Compute distance of closest approach
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numtyp h12, sigma12;
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sigma12 = gpu_dot3(r12,kappa);
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sigma12 = ucl_rsqrt((numtyp)0.5*sigma12);
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h12 = r-sigma12;
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// -- kappa is now ok
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kappa[0]*=r;
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kappa[1]*=r;
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kappa[2]*=r;
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int mtype=fast_mul(ntypes,itype)+jtype;
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numtyp sigma = sig_eps[mtype].x;
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numtyp epsilon = sig_eps[mtype].y;
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numtyp varrho = sigma/(h12+gum[0]*sigma);
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numtyp varrho6 = varrho*varrho*varrho;
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varrho6*=varrho6;
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numtyp varrho12 = varrho6*varrho6;
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u_r = (numtyp)4.0*epsilon*(varrho12-varrho6);
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numtyp temp1 = ((numtyp)2.0*varrho12*varrho-varrho6*varrho)/sigma;
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temp1 = temp1*(numtyp)24.0*epsilon;
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uslj_rsq = temp1*sigma12*sigma12*sigma12*(numtyp)0.5;
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numtyp temp2 = gpu_dot3(kappa,r12);
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uslj_rsq = uslj_rsq*ir*ir;
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dUr[0] = temp1*r12[0]+uslj_rsq*(kappa[0]-temp2*r12[0]);
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dUr[1] = temp1*r12[1]+uslj_rsq*(kappa[1]-temp2*r12[1]);
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dUr[2] = temp1*r12[2]+uslj_rsq*(kappa[2]-temp2*r12[2]);
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}
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// torque for particle 1
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{
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numtyp tempv[3], tempv2[3];
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tempv[0] = -uslj_rsq*kappa[0];
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tempv[1] = -uslj_rsq*kappa[1];
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tempv[2] = -uslj_rsq*kappa[2];
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gpu_row_times3(kappa,g1,tempv2);
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gpu_cross3(tempv,tempv2,tUr);
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}
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}
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}
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// Compute eta
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{
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eta = (numtyp)2.0*lshape[itype]*lshape[jtype];
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numtyp det_g12 = gpu_det3(g12);
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eta = ucl_powr(eta/det_g12,gum[1]);
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}
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// Compute teta
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numtyp temp[9], tempv[3], tempv2[3];
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compute_eta_torque(g12,a1,ishape,temp);
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numtyp temp1 = -eta*gum[1];
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tempv[0] = temp1*temp[0];
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tempv[1] = temp1*temp[1];
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tempv[2] = temp1*temp[2];
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gpu_cross3(a1,tempv,tempv2);
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teta[0] = tempv2[0];
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teta[1] = tempv2[1];
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teta[2] = tempv2[2];
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tempv[0] = temp1*temp[3];
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tempv[1] = temp1*temp[4];
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tempv[2] = temp1*temp[5];
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gpu_cross3(a1+3,tempv,tempv2);
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teta[0] += tempv2[0];
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teta[1] += tempv2[1];
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teta[2] += tempv2[2];
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tempv[0] = temp1*temp[6];
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tempv[1] = temp1*temp[7];
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tempv[2] = temp1*temp[8];
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gpu_cross3(a1+6,tempv,tempv2);
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teta[0] += tempv2[0];
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teta[1] += tempv2[1];
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teta[2] += tempv2[2];
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}
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numtyp chi, dchi[3], tchi[3];
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{ // Compute chi and dchi
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// Compute b12
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numtyp b2[9], b12[9];
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{
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gpu_diag_times3(well[jtype],a2,b12);
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gpu_transpose_times3(a2,b12,b2);
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gpu_plus3(b1,b2,b12);
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}
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// compute chi_12
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r12[0]*=r;
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r12[1]*=r;
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r12[2]*=r;
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numtyp iota[3];
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gpu_mldivide3(b12,r12,iota,err_flag);
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// -- iota is now iota/r
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iota[0]*=ir;
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iota[1]*=ir;
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iota[2]*=ir;
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r12[0]*=ir;
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r12[1]*=ir;
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r12[2]*=ir;
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chi = gpu_dot3(r12,iota);
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chi = ucl_powr(chi*(numtyp)2.0,gum[2]);
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// -- iota is now ok
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iota[0]*=r;
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iota[1]*=r;
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iota[2]*=r;
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numtyp temp1 = gpu_dot3(iota,r12);
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numtyp temp2 = (numtyp)-4.0*ir*ir*gum[2]*ucl_powr(chi,(gum[2]-(numtyp)1.0)/
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gum[2]);
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dchi[0] = temp2*(iota[0]-temp1*r12[0]);
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dchi[1] = temp2*(iota[1]-temp1*r12[1]);
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dchi[2] = temp2*(iota[2]-temp1*r12[2]);
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// compute t_chi
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numtyp tempv[3];
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gpu_row_times3(iota,b1,tempv);
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gpu_cross3(tempv,iota,tchi);
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temp1 = (numtyp)-4.0*ir*ir;
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tchi[0] *= temp1;
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tchi[1] *= temp1;
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tchi[2] *= temp1;
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}
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numtyp temp2 = factor_lj*eta*chi;
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if (eflag>0)
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energy+=u_r*temp2;
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numtyp temp1 = -eta*u_r*factor_lj;
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if (vflag>0) {
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r12[0]*=-r;
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r12[1]*=-r;
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r12[2]*=-r;
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numtyp ft=temp1*dchi[0]-temp2*dUr[0];
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f.x+=ft;
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virial[0]+=r12[0]*ft;
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ft=temp1*dchi[1]-temp2*dUr[1];
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f.y+=ft;
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virial[1]+=r12[1]*ft;
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virial[3]+=r12[0]*ft;
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ft=temp1*dchi[2]-temp2*dUr[2];
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f.z+=ft;
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virial[2]+=r12[2]*ft;
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virial[4]+=r12[0]*ft;
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virial[5]+=r12[1]*ft;
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} else {
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f.x+=temp1*dchi[0]-temp2*dUr[0];
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f.y+=temp1*dchi[1]-temp2*dUr[1];
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f.z+=temp1*dchi[2]-temp2*dUr[2];
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}
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// Torque on 1
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temp1 = -u_r*eta*factor_lj;
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temp2 = -u_r*chi*factor_lj;
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numtyp temp3 = -chi*eta*factor_lj;
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tor.x+=temp1*tchi[0]+temp2*teta[0]+temp3*tUr[0];
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tor.y+=temp1*tchi[1]+temp2*teta[1]+temp3*tUr[1];
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tor.z+=temp1*tchi[2]+temp2*teta[2]+temp3*tUr[2];
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} // for nbor
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store_answers_t(f,tor,energy,virial,ii,astride,tid,t_per_atom,offset,eflag,
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vflag,ans,engv);
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} // if ii
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}
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