lammps/examples/peri/log.27Nov18.peri.eps.g++.1

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LAMMPS (27 Nov 2018)
using 1 OpenMP thread(s) per MPI task
# small Peridynamic cylinder hit by projectile
units si
boundary s s s
atom_style peri
atom_modify map array
neighbor 0.0010 bin
# small target
lattice sc 0.0005
Lattice spacing in x,y,z = 0.0005 0.0005 0.0005
region target cylinder y 0.0 0.0 0.0050 -0.0050 0.0 units box
create_box 1 target
Created orthogonal box = (-0.005 -0.005 -0.005) to (0.005 0 0.005)
1 by 1 by 1 MPI processor grid
create_atoms 1 region target
Created 3487 atoms
Time spent = 0.00100374 secs
pair_style peri/eps
pair_coeff * * 14.9e9 14.9e9 0.0015001 0.0005 0.25 10.0e8
set group all density 2200
3487 settings made for density
set group all volume 1.25e-10
3487 settings made for volume
velocity all set 0.0 0.0 0.0 sum no units box
fix 1 all nve
# spherical indenter to shatter target
variable y0 equal 0.00155
variable vy equal -100
variable y equal "v_y0 + step*dt*v_vy"
fix 2 all indent 1e17 sphere 0.0000 v_y 0.0000 0.0015 units box
compute 1 all damage/atom
timestep 1.0e-7
thermo 100
#dump 1 all custom 100 dump.peri id type x y z c_1
#dump 2 all image 50 image.*.jpg type type # axes yes 0.8 0.02 view 80 -30 adiam 0.0006
#dump_modify 2 pad 4
#dump 3 all movie 50 movie.mpg type type # axes yes 0.8 0.02 view 80 -30 adiam 0.0006
#dump_modify 3 pad 4
run 1000
Neighbor list info ...
update every 1 steps, delay 10 steps, check yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 0.0025001
ghost atom cutoff = 0.0025001
binsize = 0.00125005, bins = 9 5 9
2 neighbor lists, perpetual/occasional/extra = 1 1 0
(1) pair peri/eps, perpetual
attributes: half, newton on
pair build: half/bin/atomonly/newton
stencil: half/bin/3d/newton
bin: standard
(2) fix PERI_NEIGH, occasional
attributes: full, newton on
pair build: full/bin/atomonly
stencil: full/bin/3d
bin: standard
Peridynamic bonds:
total # of bonds = 335966
bonds/atom = 96.3482
Per MPI rank memory allocation (min/avg/max) = 50.29 | 50.29 | 50.29 Mbytes
Step Temp E_pair E_mol TotEng Press Volume
0 0 0 0 0 0 5.0030006e-07
100 9.7403734e+24 248692.93 0 951891.49 9.3703576e+11 5.0030006e-07
200 1.220493e+27 1011231.9 0 89123756 1.0636834e+14 5.5224782e-07
300 2.7274231e+27 4549425.2 0 2.0145358e+08 1.7250255e+14 7.6097098e-07
400 3.3665092e+27 13347641 0 2.5639011e+08 1.5828139e+14 1.0236725e-06
500 3.8995641e+27 14196430 0 2.9572238e+08 1.5145191e+14 1.2392314e-06
600 4.6668832e+27 23135807 0 3.6005775e+08 1.478168e+14 1.5195473e-06
700 1.1847301e+28 8126622 0 8.6343315e+08 2.9204301e+14 1.9524671e-06
800 1.2328889e+28 4646514.3 0 8.9472087e+08 2.2467312e+14 2.6410944e-06
900 1.2277283e+28 2668877.7 0 8.8901759e+08 1.671177e+14 3.5358262e-06
1000 1.2260912e+28 1587002.9 0 8.8675386e+08 1.29707e+14 4.5495712e-06
Loop time of 34.8143 on 1 procs for 1000 steps with 3487 atoms
96.7% CPU use with 1 MPI tasks x 1 OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 34.045 | 34.045 | 34.045 | 0.0 | 97.79
Neigh | 0.63254 | 0.63254 | 0.63254 | 0.0 | 1.82
Comm | 0.0025852 | 0.0025852 | 0.0025852 | 0.0 | 0.01
Output | 0.00035906 | 0.00035906 | 0.00035906 | 0.0 | 0.00
Modify | 0.11784 | 0.11784 | 0.11784 | 0.0 | 0.34
Other | | 0.01593 | | | 0.05
Nlocal: 3487 ave 3487 max 3487 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 546591 ave 546591 max 546591 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs: 1.20908e+06 ave 1.20908e+06 max 1.20908e+06 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 1209076
Ave neighs/atom = 346.738
Neighbor list builds = 45
Dangerous builds = 0
Please see the log.cite file for references relevant to this simulation
Total wall time: 0:00:34