lammps/doc/txt/Howto.txt

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"Previous Section"_Performance.html - "LAMMPS WWW Site"_lws -
"LAMMPS Documentation"_ld - "LAMMPS Commands"_lc - "Next
Section"_Examples.html :c
:link(lws,http://lammps.sandia.gov)
:link(ld,Manual.html)
:link(lc,Commands.html#comm)
:line
Howto discussions :h2
These doc pages describe how to perform various tasks with LAMMPS,
both for users and developers. The
"glossary"_http://lammps.sandia.gov website page also lists MD
terminology with links to corresponding LAMMPS manual pages. The
example input scripts included in the examples dir of the LAMMPS
distribution and highlighted on the "Examples"_Examples.html doc page
also show how to setup and run various kinds of simulations.
Tutorials howto :h3
<!-- RST
.. toctree::
:name: tutorials
:maxdepth: 1
Howto_github
Howto_pylammps
Howto_bash
END_RST -->
<!-- HTML_ONLY -->
"Using GitHub with LAMMPS"_Howto_github.html
"PyLAMMPS interface to LAMMPS"_Howto_pylammps.html
"Using LAMMPS with bash on Windows"_Howto_bash.html :all(b)
<!-- END_HTML_ONLY -->
General howto :h3
<!-- RST
.. toctree::
:name: general_howto
:maxdepth: 1
Howto_restart
Howto_viz
Howto_multiple
Howto_replica
Howto_library
Howto_couple
Howto_client_server
END_RST -->
<!-- HTML_ONLY -->
"Restart a simulation"_Howto_restart.html
"Visualize LAMMPS snapshots"_Howto_viz.html
"Run multiple simulations from one input script"_Howto_multiple.html
"Multi-replica simulations"_Howto_replica.html
"Library interface to LAMMPS"_Howto_library.html
"Couple LAMMPS to other codes"_Howto_couple.html
"Using LAMMPS in client/server mode"_Howto_client_server.html :all(b)
<!-- END_HTML_ONLY -->
Settings howto :h3
<!-- RST
.. toctree::
:name: settings
:maxdepth: 1
Howto_2d
Howto_triclinic
Howto_thermostat
Howto_barostat
Howto_walls
Howto_nemd
Howto_dispersion
END_RST -->
<!-- HTML_ONLY -->
"2d simulations"_Howto_2d.html
"Triclinic (non-orthogonal) simulation boxes"_Howto_triclinic.html
"Thermostats"_Howto_thermostat.html
"Barostats"_Howto_barostat.html
"Walls"_Howto_walls.html
"NEMD simulations"_Howto_nemd.html
"Long-range dispersion settings"_Howto_dispersion.html :all(b)
<!-- END_HTML_ONLY -->
Analysis howto :h3
<!-- RST
.. toctree::
:name: analysis
:maxdepth: 1
Howto_output
Howto_chunk
Howto_temperature
Howto_elastic
Howto_kappa
Howto_viscosity
Howto_diffusion
END_RST -->
<!-- HTML_ONLY -->
"Output from LAMMPS (thermo, dumps, computes, fixes, variables)"_Howto_output.html
"Use chunks to calculate system properties"_Howto_chunk.html :all(b)
"Calculate temperature"_Howto_temperature.html
"Calculate elastic constants"_Howto_elastic.html
"Calculate thermal conductivity"_Howto_kappa.html
"Calculate viscosity"_Howto_viscosity.html
"Calculate a diffusion coefficient"_Howto_diffusion.html :all(b)
<!-- END_HTML_ONLY -->
Force fields howto :h3
<!-- RST
.. toctree::
:name: force
:maxdepth: 1
Howto_bioFF
Howto_tip3p
Howto_tip4p
Howto_spc
END_RST -->
<!-- HTML_ONLY -->
"CHARMM, AMBER, COMPASS, and DREIDING force fields"_Howto_bioFF.html
"TIP3P water model"_Howto_tip3p.html
"TIP4P water model"_Howto_tip4p.html
"SPC water model"_Howto_spc.html :all(b)
<!-- END_HTML_ONLY -->
Packages howto :h3
<!-- RST
.. toctree::
:name: packages
:maxdepth: 1
Howto_spherical
Howto_granular
Howto_body
Howto_polarizable
Howto_coreshell
Howto_drude
Howto_drude2
Howto_manifold
Howto_spins
END_RST -->
<!-- HTML_ONLY -->
"Finite-size spherical and aspherical particles"_Howto_spherical.html
"Granular models"_Howto_granular.html
"Body style particles"_Howto_body.html
"Polarizable models"_Howto_polarizable.html
"Adiabatic core/shell model"_Howto_coreshell.html
"Drude induced dipoles"_Howto_drude.html
"Drude induced dipoles (extended)"_Howto_drude2.html
"Manifolds (surfaces)"_Howto_manifold.html
"Magnetic spins"_Howto_spins.html :all(b)
<!-- END_HTML_ONLY -->