lammps/doc/src
Axel Kohlmeyer fc090c22f4
fix typo
2020-06-22 22:24:06 -04:00
..
99 one more permission fix 2020-06-10 13:48:25 -04:00
2001 Fix typo 2020-03-14 13:57:48 +09:00
Developer import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
JPG add some explanations and figures for code coverage 2020-05-29 08:24:05 -04:00
PDF Update Colvars to version 2020-02-27 2020-02-27 19:55:31 -05:00
_ext update sphinx extension to automatically pad lists to fill tables and avoid errors processing the documentation 2020-01-21 11:39:29 -05:00
.gitignore start more detailed CMake howto document 2020-04-11 11:55:13 -04:00
Build.rst update build overview 2020-04-11 22:20:35 -04:00
Build_basics.rst make subheaders and typesetting more consistent 2020-06-14 12:41:19 -04:00
Build_cmake.rst one more correction for `cmake --build` 2020-05-26 12:29:03 -04:00
Build_development.rst fix typo 2020-06-22 22:24:06 -04:00
Build_extras.rst Merge branch 'master' into collected-small-changes 2020-06-15 12:12:45 -04:00
Build_link.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Build_make.rst explain error message when using a non-c++11 compliant compiler. 2020-04-12 16:32:40 -04:00
Build_package.rst add and document new "download" preset 2020-06-14 19:50:14 -04:00
Build_settings.rst make subheaders and typesetting more consistent 2020-06-14 12:41:19 -04:00
Build_windows.rst update docs for updated CMake support with MinGW 2020-03-19 11:09:27 -04:00
Commands.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
Commands_all.rst add missing pair_style command to commands overview 2020-06-08 01:49:16 -04:00
Commands_bond.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
Commands_category.rst convert lists to tables for more compact presentation 2020-02-28 18:52:13 +01:00
Commands_compute.rst Merge branch 'master' into feature-cnt 2020-05-18 18:23:16 -04:00
Commands_fix.rst updates "add eco df" 2020-06-05 14:57:59 +02:00
Commands_input.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Commands_kspace.rst remove backslash escapes for underscore in doc references 2020-01-23 16:52:38 -05:00
Commands_pair.rst snap is listed twice 2020-06-22 13:30:54 -04:00
Commands_parse.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
Commands_removed.rst use consistent capitalization with NVIDIA 2020-04-10 23:20:10 -04:00
Commands_structure.rst remove trailing whitespace from documentation sources 2020-03-10 15:51:06 -04:00
Errors.rst provide info about including debug support in executable and a stack trace debug tutorial 2020-04-12 15:34:00 -04:00
Errors_bugs.rst provide info about including debug support in executable and a stack trace debug tutorial 2020-04-12 15:34:00 -04:00
Errors_common.rst replace "xxxn't" with "xxx not" 2020-03-18 07:02:34 -04:00
Errors_debug.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Errors_messages.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Errors_warnings.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Examples.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Howto.rst start more detailed CMake howto document 2020-04-11 11:55:13 -04:00
Howto_2d.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
Howto_barostat.rst delete empty lines at the end of files 2020-01-31 14:03:52 -05:00
Howto_bash.rst Add link to official WSL docs 2020-03-24 18:52:05 -04:00
Howto_bioFF.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
Howto_body.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
Howto_chunk.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Howto_client_server.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
Howto_cmake.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Howto_coreshell.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
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Howto_diffusion.rst delete superfluous horizontal line plus preceding empty lines at the end of doc files 2020-01-31 14:06:14 -05:00
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Howto_drude2.rst Some more code-blocks instead of parsed-literal 2020-03-13 18:38:47 -04:00
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Howto_library.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
Howto_manifold.rst some more fixups 2020-03-13 17:02:59 -04:00
Howto_multiple.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
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Howto_pylammps.rst add links to ctypes, ipython, and jupyter 2020-03-18 07:01:06 -04:00
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Howto_restart.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Howto_spc.rst typeset symbols in water model howtos 2020-03-10 16:20:52 -04:00
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Howto_tip3p.rst typeset symbols in water model howtos 2020-03-10 16:20:52 -04:00
Howto_tip4p.rst Merge branch 'DOI' of github.com:e-kwsm/lammps into doc-cleanup 2020-03-12 05:43:44 -04:00
Howto_triclinic.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Howto_viscosity.rst make spellchecker and sphinx happy 2020-04-30 12:45:36 -04:00
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Install.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
Install_conda.rst use the name MacOS consistently 2020-03-11 19:32:43 -04:00
Install_git.rst some more typesetting improvements 2020-03-13 19:41:33 -04:00
Install_linux.rst Add explaination of potenentials directory behavior for `lmp_daily` 2020-04-28 16:16:28 -05:00
Install_mac.rst tweaks 2020-04-11 02:02:15 -04:00
Install_patch.rst update lammps.sandia.gov URLs to use https:// 2020-03-12 00:28:28 -04:00
Install_tarball.rst some more typesetting improvements 2020-03-13 19:41:33 -04:00
Install_windows.rst some more typesetting improvements 2020-03-13 19:41:33 -04:00
Intro.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
Intro_authors.rst update lammps.sandia.gov URLs to use https:// 2020-03-12 00:28:28 -04:00
Intro_features.rst update URLs for pizza.py homepage 2020-03-12 00:13:58 -04:00
Intro_nonfeatures.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Intro_opensource.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
Intro_overview.rst update lammps.sandia.gov URLs to use https:// 2020-03-12 00:28:28 -04:00
Intro_website.rst update lammps.sandia.gov URLs to use https:// 2020-03-12 00:28:28 -04:00
Manual.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Manual_build.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Manual_version.rst update lammps.sandia.gov URLs to use https:// 2020-03-12 00:28:28 -04:00
Modify.rst new doc edits for refactored AtomVec styles 2020-03-18 16:40:29 -06:00
Modify_atom.rst correct references and table format 2020-04-30 20:19:23 -04:00
Modify_body.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
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Modify_contribute.rst add reference to LAMMPS slack 2020-06-09 16:06:47 -04:00
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Modify_fix.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Modify_kspace.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
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Packages.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
Packages_details.rst add note about dependency on SNAP in the MLIAP overview page 2020-06-22 19:46:44 -04:00
Packages_standard.rst Fixed incomplete documentation entries for mliap 2020-06-22 09:35:16 -06:00
Packages_user.rst fully integrate and update USER-MESONT docs. Add notes about C++ pair style and download of potential files 2020-06-12 09:02:56 -04:00
Python_call.rst Some more code-blocks instead of parsed-literal 2020-03-13 18:38:47 -04:00
Python_examples.rst some more fixups 2020-03-13 17:02:59 -04:00
Python_head.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
Python_install.rst Some more code-blocks instead of parsed-literal 2020-03-13 18:38:47 -04:00
Python_library.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Python_mpi.rst Some more code-blocks instead of parsed-literal 2020-03-13 18:38:47 -04:00
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Python_run.rst delete empty lines at the end of files 2020-01-31 14:03:52 -05:00
Python_shlib.rst update instructions in Python doc section 2020-04-09 21:47:47 -04:00
Python_test.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Run_basics.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
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Run_options.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
Run_output.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
Run_windows.rst Some more code-blocks instead of parsed-literal 2020-03-13 18:38:47 -04:00
Speed.rst update lammps.sandia.gov URLs to use https:// 2020-03-12 00:28:28 -04:00
Speed_bench.rst update lammps.sandia.gov URLs to use https:// 2020-03-12 00:28:28 -04:00
Speed_compare.rst use consistent capitalization with NVIDIA 2020-04-10 23:20:10 -04:00
Speed_gpu.rst Some more code-blocks instead of parsed-literal 2020-03-13 18:38:47 -04:00
Speed_intel.rst Some more code-blocks instead of parsed-literal 2020-03-13 18:38:47 -04:00
Speed_kokkos.rst update Kokkos related documentation for Kokkos 3.1 and refactor build info a bit 2020-04-21 11:46:16 -04:00
Speed_measure.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
Speed_omp.rst Some more code-blocks instead of parsed-literal 2020-03-13 18:38:47 -04:00
Speed_opt.rst Some more code-blocks instead of parsed-literal 2020-03-13 18:38:47 -04:00
Speed_packages.rst use consistent capitalization with NVIDIA 2020-04-10 23:20:10 -04:00
Speed_tips.rst delete empty lines at the end of files 2020-01-31 14:03:52 -05:00
Tools.rst do not advertise multiple targets in cmbuild wrapper 2020-03-17 15:57:33 -04:00
angle_charmm.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
angle_class2.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
angle_coeff.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
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angle_cosine_buck6d.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
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angle_cosine_shift_exp.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
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angle_style.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
angle_table.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
angle_zero.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
angles.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
atc_add_molecule.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
atc_add_species.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
atc_atom_element_map.rst next batch of converted files 2020-03-19 14:39:00 -04:00
atc_atom_weight.rst next batch of converted files 2020-03-19 14:39:00 -04:00
atc_atomic_charge.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
atc_boundary_dynamics.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
atc_boundary_faceset.rst fix rst formatting issues 2020-03-19 15:48:46 -04:00
atc_boundary_type.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_consistent_fe_initialization.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
atc_control_localized_lambda.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_control_momentum.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
atc_control_thermal.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
atc_decomposition.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_electron_integration.rst next chunk of converted html files 2020-03-16 07:34:56 -04:00
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atc_fix.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_fix_flux.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_hardy_computes.rst next chunk of converted atc doc files 2020-03-18 11:39:53 -04:00
atc_hardy_fields.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
atc_hardy_gradients.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
atc_hardy_kernel.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
atc_hardy_on_the_fly.rst next batch of converted files 2020-03-19 14:39:00 -04:00
atc_hardy_rates.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
atc_initial.rst next batch of converted files 2020-03-19 14:39:00 -04:00
atc_internal_element_set.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_internal_quadrature.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
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atc_mass_matrix.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
atc_material.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
atc_mesh_add_to_nodeset.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_mesh_create.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_mesh_create_elementset.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_mesh_create_faceset_box.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_mesh_create_faceset_plane.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_mesh_create_nodeset.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_mesh_delete_elements.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_mesh_nodeset_to_elementset.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_mesh_output.rst some more converted atc fix_modify docs 2020-03-18 06:29:17 -04:00
atc_mesh_quadrature.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_mesh_read.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_mesh_write.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_output.rst some more converted atc fix_modify docs 2020-03-18 06:29:17 -04:00
atc_output_boundary_integral.rst some more converted atc fix_modify docs 2020-03-18 06:29:17 -04:00
atc_output_contour_integral.rst some more converted atc fix_modify docs 2020-03-18 06:29:17 -04:00
atc_output_nodeset.rst some more converted atc fix_modify docs 2020-03-18 06:29:17 -04:00
atc_output_volume_integral.rst some more converted atc fix_modify docs 2020-03-18 06:29:17 -04:00
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atc_read_restart.rst some more converted atc fix_modify docs 2020-03-18 06:29:17 -04:00
atc_remove_molecule.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
atc_remove_source.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_remove_species.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
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atc_set_reference_pe.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
atc_source.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_source_integration.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
atc_temperature_definition.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
atc_time_filter.rst next chunk of converted html files 2020-03-16 07:34:56 -04:00
atc_time_integration.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
atc_track_displacement.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
atc_unfix.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_unfix_flux.rst add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs 2020-03-13 11:06:11 -04:00
atc_write_atom_weights.rst next batch of converted files 2020-03-19 14:39:00 -04:00
atc_write_restart.rst some more converted atc fix_modify docs 2020-03-18 06:29:17 -04:00
atom_modify.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
atom_style.rst Merge branch 'master' into feature-cnt 2020-05-18 18:23:16 -04:00
balance.rst use list-table and figure to have side-by-side images 2020-04-13 10:30:01 -04:00
bond_class2.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
bond_coeff.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
bond_fene.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
bond_fene_expand.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
bond_gromos.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
bond_harmonic.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
bond_harmonic_shift.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
bond_harmonic_shift_cut.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
bond_hybrid.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
bond_mm3.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
bond_morse.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
bond_none.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
bond_nonlinear.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
bond_oxdna.rst fix up some escaped '*' characters in "code-block" sections that do not need to be escaped 2020-03-24 11:35:21 -04:00
bond_quartic.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
bond_style.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
bond_table.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
bond_write.rst document the use and generation of "DATE:" and "UNITS:" tags 2020-06-14 14:41:04 -04:00
bond_zero.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
bonds.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
boundary.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
box.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
change_box.rst document the image flag reset for switching boundaries 2020-04-27 10:51:53 -04:00
clear.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
comm_modify.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
comm_style.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
commands_list.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
compute.rst Merge branch 'master' into feature-cnt 2020-05-18 18:23:16 -04:00
compute_ackland_atom.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_adf.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_angle.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_angle_local.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_angmom_chunk.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_basal_atom.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_body_local.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_bond.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_bond_local.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_centro_atom.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_chunk_atom.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_chunk_spread_atom.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_cluster_atom.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_cna_atom.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_cnp_atom.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_com.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_com_chunk.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_contact_atom.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_coord_atom.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_damage_atom.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_dihedral.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_dihedral_local.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_dilatation_atom.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_dipole_chunk.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_displace_atom.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_dpd.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_dpd_atom.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
compute_edpd_temp_atom.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_entropy_atom.rst convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
compute_erotate_asphere.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_erotate_rigid.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_erotate_sphere.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_erotate_sphere_atom.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_event_displace.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_fep.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_global_atom.rst some more fixups 2020-03-13 17:02:59 -04:00
compute_group_group.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_gyration.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_gyration_chunk.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_gyration_shape.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_gyration_shape_chunk.rst fix typo 2020-05-21 01:13:03 -04:00
compute_heat_flux.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_hexorder_atom.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_hma.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_improper.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_improper_local.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_inertia_chunk.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_ke.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_ke_atom.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_ke_atom_eff.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
compute_ke_eff.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_ke_rigid.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_mesont.rst Fix whitespace 2020-06-16 07:20:09 -04:00
compute_modify.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
compute_momentum.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_msd.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_msd_chunk.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_msd_nongauss.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_omega_chunk.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_orientorder_atom.rst Merge branch 'master' of https://github.com/lammps/lammps into orientorder-components-parity 2020-06-19 14:32:00 -06:00
compute_pair.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_pair_local.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_pe.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_pe_atom.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_plasticity_atom.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_pressure.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_pressure_cylinder.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_pressure_uef.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_property_atom.rst Fix whitespace 2020-06-16 07:20:09 -04:00
compute_property_chunk.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_property_local.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_ptm_atom.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_rdf.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_reduce.rst some more fixups 2020-03-13 17:02:59 -04:00
compute_reduce_chunk.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_rigid_local.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_saed.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_slice.rst some more fixups 2020-03-13 17:02:59 -04:00
compute_smd_contact_radius.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_smd_damage.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_smd_hourglass_error.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_smd_internal_energy.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_smd_plastic_strain.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_smd_plastic_strain_rate.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_smd_rho.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_smd_tlsph_defgrad.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_smd_tlsph_dt.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_smd_tlsph_num_neighs.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_smd_tlsph_shape.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_smd_tlsph_strain.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_smd_tlsph_strain_rate.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_smd_tlsph_stress.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_smd_triangle_vertices.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_smd_ulsph_num_neighs.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
compute_smd_ulsph_strain.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
compute_smd_ulsph_strain_rate.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
compute_smd_ulsph_stress.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
compute_smd_vol.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_sna_atom.rst Fixed incomplete documentation entries for mliap 2020-06-22 09:35:16 -06:00
compute_sph_e_atom.rst renaming of variables and command names in USER-SPH 2020-04-30 16:40:09 -06:00
compute_sph_rho_atom.rst renaming of variables and command names in USER-SPH 2020-04-30 16:40:09 -06:00
compute_sph_t_atom.rst renaming of variables and command names in USER-SPH 2020-04-30 16:40:09 -06:00
compute_spin.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_stress_atom.rst add more explicit note about lack of support for pair styles in compute centroid/stress/atom 2020-04-21 12:44:13 -04:00
compute_stress_mop.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_tally.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_tdpd_cc_atom.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_temp_asphere.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_body.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_chunk.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_com.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_cs.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_temp_deform.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_deform_eff.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_drude.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_temp_eff.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_partial.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_profile.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_ramp.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_region.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_region_eff.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_rotate.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_sphere.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_temp_uef.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_ti.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_torque_chunk.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_vacf.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
compute_vcm_chunk.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
compute_viscosity_cos.rst Minor fix in doc 2020-04-30 19:00:37 +02:00
compute_voronoi_atom.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
compute_xrd.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
computes.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
create_atoms.rst replace "xxxn't" with "xxx not" 2020-03-18 07:02:34 -04:00
create_bonds.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
create_box.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
delete_atoms.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
delete_bonds.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dielectric.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
dihedral_charmm.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
dihedral_class2.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
dihedral_coeff.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
dihedral_cosine_shift_exp.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
dihedral_fourier.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dihedral_harmonic.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
dihedral_helix.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
dihedral_hybrid.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dihedral_multi_harmonic.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
dihedral_nharmonic.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dihedral_none.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
dihedral_opls.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
dihedral_quadratic.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dihedral_spherical.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dihedral_style.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dihedral_table.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
dihedral_table_cut.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
dihedral_zero.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dihedrals.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
dimension.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
displace_atoms.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dump.rst replace "xxxn't" with "xxx not" 2020-03-18 07:02:34 -04:00
dump_adios.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dump_cfg_uef.rst convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
dump_h5md.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dump_image.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
dump_modify.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
dump_molfile.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
dump_netcdf.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
dump_vtk.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
dynamical_matrix.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
echo.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
fix.rst fix up typesetting of docs, spelling, and integrated into fix command table 2020-06-06 10:01:07 -04:00
fix_accelerate_cos.rst add add check to refuse running with 2d systems and document it. 2020-04-30 12:46:16 -04:00
fix_adapt.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
fix_adapt_fep.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
fix_addforce.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
fix_addtorque.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
fix_append_atoms.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
fix_atc.rst final batch of converted AtC doc files 2020-03-19 15:36:45 -04:00
fix_atom_swap.rst replace "xxxn't" with "xxx not" 2020-03-18 07:02:34 -04:00
fix_ave_atom.rst some more fixups 2020-03-13 17:02:59 -04:00
fix_ave_chunk.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
fix_ave_correlate.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
fix_ave_correlate_long.rst manually incorporate fixes for ave/correlate/long from PR #2066 2020-05-04 08:18:56 -04:00
fix_ave_histo.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
fix_ave_time.rst some more fixups 2020-03-13 17:02:59 -04:00
fix_aveforce.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
fix_balance.rst use list-table and figure to have side-by-side images 2020-04-13 10:30:01 -04:00
fix_bocs.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
fix_bond_break.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
fix_bond_create.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
fix_bond_react.rst fix permissions 2020-06-06 10:44:09 -04:00
fix_bond_swap.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
fix_box_relax.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
fix_client_md.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
fix_cmap.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
fix_colvars.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
fix_controller.rst some more fixups 2020-03-13 17:02:59 -04:00
fix_deform.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
fix_deposit.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
fix_dpd_energy.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
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fix_npt_cauchy.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
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fix_orient.rst Added missing "Syntax" label 2020-06-07 23:01:48 +02:00
fix_orient_eco.rst update to fix orient/eco from the authors 2020-06-09 14:55:31 -04:00
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fix_recenter.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
fix_restrain.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
fix_rhok.rst Added missing "Syntax" label 2020-06-07 23:01:48 +02:00
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fix_sph.rst USER-SPH doc tweak 2020-04-30 17:08:05 -06:00
fix_sph_stationary.rst renaming of variables and command names in USER-SPH 2020-04-30 16:40:09 -06:00
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fix_ti_spring.rst use proper units (fmsec -> fs, psec -> ps and so on) 2020-05-21 01:13:15 -04:00
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fix_vector.rst some more fixups 2020-03-13 17:02:59 -04:00
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fix_wall_body_polyhedron.rst Fixed the doc page for fix wall/body/polyhedron 2020-04-17 13:33:47 -05:00
fix_wall_ees.rst replace parsed-literal with code-block where appropriate. typeset keywords in cursive 2020-03-10 16:54:04 -04:00
fix_wall_gran.rst vector -> array 2020-06-11 14:51:36 -04:00
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fixes.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
group.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
group2ndx.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
hyper.rst clarified AMD quote from review paper 2020-04-29 16:14:52 -06:00
if.rst replace "xxxn't" with "xxx not" 2020-03-18 07:02:34 -04:00
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improper_coeff.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
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improper_harmonic.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
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improper_none.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
improper_ring.rst some minor fixups 2020-03-13 16:42:08 -04:00
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include.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
info.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
jump.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
kim_commands.rst correct spelling 2020-03-17 21:13:03 -04:00
kspace_modify.rst add missing "reciprocal" 2020-05-21 07:41:07 -04:00
kspace_style.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
label.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
lattice.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
log.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
mass.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
message.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
min_modify.rst Merge branch 'clean-master2' of github.com:julient31/lammps into neel-rework 2020-03-30 09:01:30 -06:00
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min_style.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
minimize.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
molecule.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
neb.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
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neigh_modify.rst replace "xxxn't" with "xxx not" 2020-03-18 07:02:34 -04:00
neighbor.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
newton.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
next.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
package.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_adp.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_agni.rst replace "xxxn't" with "xxx not" 2020-03-18 07:02:34 -04:00
pair_airebo.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_atm.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
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pair_beck.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_body_nparticle.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
pair_body_rounded_polygon.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_body_rounded_polyhedron.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_bop.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
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pair_buck_long.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_charmm.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_class2.rst fix up some escaped '*' characters in "code-block" sections that do not need to be escaped 2020-03-24 11:35:21 -04:00
pair_coeff.rst Merge pull request #2156 from akohlmey/collected-small-changes 2020-06-15 14:40:27 -04:00
pair_colloid.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_comb.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_cosine_squared.rst Fix typo in latex formula (cosine was not squared) 2020-04-11 17:17:48 +01:00
pair_coul.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
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pair_coul_slater.rst update coul/slater docs to align with recent changes in upstream 2020-03-18 21:07:57 -04:00
pair_cs.rst Update pair_cs.rst 2020-04-07 18:50:53 +02:00
pair_dipole.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_dpd.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_dpd_fdt.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
pair_drip.rst replace "xxxn't" with "xxx not" 2020-03-18 07:02:34 -04:00
pair_dsmc.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_e3b.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_eam.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_edip.rst replace "xxxn't" with "xxx not" 2020-03-18 07:02:34 -04:00
pair_eff.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_eim.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_exp6_rx.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_extep.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_fep_soft.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_gauss.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_gayberne.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_gran.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_granular.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_gromacs.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_gw.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_hbond_dreiding.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_hybrid.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_ilp_graphene_hbn.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_kim.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_kolmogorov_crespi_full.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_kolmogorov_crespi_z.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_lcbop.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_lebedeva_z.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_line_lj.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_list.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_lj.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_lj96.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_lj_cubic.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_lj_expand.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_lj_long.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_lj_smooth.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_lj_smooth_linear.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_lj_switch3_coulgauss_long.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_local_density.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_lubricate.rst Fix Formatting of "Examples" Label 2020-06-07 23:27:02 +02:00
pair_lubricateU.rst Fix "Example" Tag formatting 2020-06-08 04:21:24 +02:00
pair_mdf.rst make formatting consistent with lj/cut 2020-06-17 15:03:36 -04:00
pair_meam_spline.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_meam_sw_spline.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_meamc.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_mesocnt.rst move pair style mesocnt from USER-MISC to (upcoming) USER-MESONT package 2020-06-11 17:41:19 -04:00
pair_mesodpd.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_mesont_tpm.rst Fix whitespace 2020-06-16 07:20:09 -04:00
pair_mgpt.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_mie.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_mliap.rst Fixed a few minor problems 2020-06-22 09:11:38 -06:00
pair_mm3_switch3_coulgauss_long.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_modify.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_momb.rst update docs to cleanly translate 2020-04-16 18:17:38 -04:00
pair_morse.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_multi_lucy.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_multi_lucy_rx.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_nb3b_harmonic.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_nm.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_none.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
pair_oxdna.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
pair_oxdna2.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
pair_oxrna2.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
pair_peri.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_polymorphic.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_python.rst fix up some escaped '*' characters in "code-block" sections that do not need to be escaped 2020-03-24 11:35:21 -04:00
pair_quip.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_reaxc.rst make MIN_HBONDS define for reax/c configurable via an input option 2020-05-01 23:22:48 -04:00
pair_resquared.rst some more fixups 2020-03-13 17:02:59 -04:00
pair_sdk.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_sdpd_taitwater_isothermal.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_smd_hertz.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_smd_tlsph.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
pair_smd_triangulated_surface.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_smd_ulsph.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_smtbq.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_snap.rst Merge remote-tracking branch 'refs/remotes/origin/chem_snap' into chem_snap 2020-06-15 12:22:11 -07:00
pair_soft.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_sph_heatconduction.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_sph_idealgas.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_sph_lj.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_sph_rhosum.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_sph_taitwater.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_sph_taitwater_morris.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_spin_dipole.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_spin_dmi.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_spin_exchange.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_spin_magelec.rst fix up some escaped '*' characters in "code-block" sections that do not need to be escaped 2020-03-24 11:35:21 -04:00
pair_spin_neel.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_srp.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_style.rst Fixed incomplete documentation entries for mliap 2020-06-22 09:35:16 -06:00
pair_sw.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_table.rst Merge pull request #2156 from akohlmey/collected-small-changes 2020-06-15 14:40:27 -04:00
pair_table_rx.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_tersoff.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_tersoff_mod.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_tersoff_zbl.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_thole.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_tri_lj.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_ufm.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_vashishta.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
pair_write.rst document the use and generation of "DATE:" and "UNITS:" tags 2020-06-14 14:41:04 -04:00
pair_yukawa.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_yukawa_colloid.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_zbl.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pair_zero.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
pairs.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
partition.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
prd.rst clarified AMD quote from review paper 2020-04-29 16:14:52 -06:00
print.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
processors.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
python.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
quit.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
read_data.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
read_dump.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
read_restart.rst replace "xxxn't" with "xxx not" 2020-03-18 07:02:34 -04:00
region.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
replicate.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
rerun.rst replace "xxxn't" with "xxx not" 2020-03-18 07:02:34 -04:00
reset_ids.rst fix spelling 2020-06-11 21:28:32 -04:00
reset_timestep.rst collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
restart.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
run.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
run_style.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
server.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
server_mc.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
server_md.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
set.rst renaming of variables and command names in USER-SPH 2020-04-30 16:40:09 -06:00
shell.rst use "command" instead of "cmd" 2020-03-18 07:02:49 -04:00
special_bonds.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
suffix.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
tad.rst clarified AMD quote from review paper 2020-04-29 16:14:52 -06:00
temper.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
temper_grem.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
temper_npt.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
thermo.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
thermo_modify.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
thermo_style.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
third_order.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
timer.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
timestep.rst use proper units (fmsec -> fs, psec -> ps and so on) 2020-05-21 01:13:15 -04:00
uncompute.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
undump.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
unfix.rst more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
units.rst use proper units (fmsec -> fs, psec -> ps and so on) 2020-05-21 01:13:15 -04:00
variable.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00
velocity.rst use proper units (fmsec -> fs, psec -> ps and so on) 2020-05-21 01:13:15 -04:00
write_coeff.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
write_data.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
write_dump.rst replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
write_restart.rst import updates to the manual from the progguide branch 2020-06-14 11:25:02 -04:00