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99
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2020-06-10 13:48:25 -04:00 |
2001
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Fix typo
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2020-03-14 13:57:48 +09:00 |
Developer
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
JPG
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add some explanations and figures for code coverage
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2020-05-29 08:24:05 -04:00 |
PDF
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Update Colvars to version 2020-02-27
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2020-02-27 19:55:31 -05:00 |
_ext
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update sphinx extension to automatically pad lists to fill tables and avoid errors processing the documentation
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2020-01-21 11:39:29 -05:00 |
.gitignore
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start more detailed CMake howto document
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2020-04-11 11:55:13 -04:00 |
Build.rst
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update build overview
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2020-04-11 22:20:35 -04:00 |
Build_basics.rst
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make subheaders and typesetting more consistent
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2020-06-14 12:41:19 -04:00 |
Build_cmake.rst
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one more correction for `cmake --build`
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2020-05-26 12:29:03 -04:00 |
Build_development.rst
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fix typo
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2020-06-22 22:24:06 -04:00 |
Build_extras.rst
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Merge branch 'master' into collected-small-changes
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2020-06-15 12:12:45 -04:00 |
Build_link.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
Build_make.rst
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explain error message when using a non-c++11 compliant compiler.
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2020-04-12 16:32:40 -04:00 |
Build_package.rst
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add and document new "download" preset
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2020-06-14 19:50:14 -04:00 |
Build_settings.rst
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make subheaders and typesetting more consistent
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2020-06-14 12:41:19 -04:00 |
Build_windows.rst
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update docs for updated CMake support with MinGW
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2020-03-19 11:09:27 -04:00 |
Commands.rst
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collapse multiple empty lines into a single empty line
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Commands_all.rst
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add missing pair_style command to commands overview
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2020-06-08 01:49:16 -04:00 |
Commands_bond.rst
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collapse multiple empty lines into a single empty line
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Commands_category.rst
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convert lists to tables for more compact presentation
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2020-02-28 18:52:13 +01:00 |
Commands_compute.rst
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Merge branch 'master' into feature-cnt
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2020-05-18 18:23:16 -04:00 |
Commands_fix.rst
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updates "add eco df"
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2020-06-05 14:57:59 +02:00 |
Commands_input.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
Commands_kspace.rst
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remove backslash escapes for underscore in doc references
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2020-01-23 16:52:38 -05:00 |
Commands_pair.rst
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snap is listed twice
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2020-06-22 13:30:54 -04:00 |
Commands_parse.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
Commands_removed.rst
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use consistent capitalization with NVIDIA
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2020-04-10 23:20:10 -04:00 |
Commands_structure.rst
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remove trailing whitespace from documentation sources
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2020-03-10 15:51:06 -04:00 |
Errors.rst
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provide info about including debug support in executable and a stack trace debug tutorial
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2020-04-12 15:34:00 -04:00 |
Errors_bugs.rst
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provide info about including debug support in executable and a stack trace debug tutorial
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2020-04-12 15:34:00 -04:00 |
Errors_common.rst
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replace "xxxn't" with "xxx not"
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2020-03-18 07:02:34 -04:00 |
Errors_debug.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
Errors_messages.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
Errors_warnings.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
Examples.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
Howto.rst
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start more detailed CMake howto document
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2020-04-11 11:55:13 -04:00 |
Howto_2d.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
Howto_barostat.rst
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Howto_bash.rst
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2020-03-24 18:52:05 -04:00 |
Howto_bioFF.rst
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Howto_body.rst
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2020-03-13 16:34:57 -04:00 |
Howto_chunk.rst
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import updates to the manual from the progguide branch
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Howto_client_server.rst
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Howto_cmake.rst
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import updates to the manual from the progguide branch
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Howto_coreshell.rst
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import updates to the manual from the progguide branch
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Howto_couple.rst
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Howto_diffusion.rst
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Howto_dispersion.rst
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Howto_drude.rst
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Howto_drude2.rst
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Howto_elastic.rst
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Howto_github.rst
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Howto_kappa.rst
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Howto_library.rst
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Howto_manifold.rst
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some more fixups
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2020-03-13 17:02:59 -04:00 |
Howto_multiple.rst
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import updates to the manual from the progguide branch
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Howto_nemd.rst
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Howto_polarizable.rst
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Howto_pylammps.rst
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2020-03-18 07:01:06 -04:00 |
Howto_replica.rst
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Howto_restart.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
Howto_spc.rst
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typeset symbols in water model howtos
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Howto_spherical.rst
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2020-03-13 16:34:57 -04:00 |
Howto_spins.rst
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Howto_temperature.rst
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Howto_thermostat.rst
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Howto_tip3p.rst
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typeset symbols in water model howtos
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2020-03-10 16:20:52 -04:00 |
Howto_tip4p.rst
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2020-03-12 05:43:44 -04:00 |
Howto_triclinic.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
Howto_viscosity.rst
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Howto_viz.rst
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next chunk of converted html files
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2020-03-16 07:34:56 -04:00 |
Howto_walls.rst
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Install.rst
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Install_conda.rst
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2020-03-11 19:32:43 -04:00 |
Install_git.rst
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some more typesetting improvements
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2020-03-13 19:41:33 -04:00 |
Install_linux.rst
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Add explaination of potenentials directory behavior for `lmp_daily`
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2020-04-28 16:16:28 -05:00 |
Install_mac.rst
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tweaks
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2020-04-11 02:02:15 -04:00 |
Install_patch.rst
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update lammps.sandia.gov URLs to use https://
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2020-03-12 00:28:28 -04:00 |
Install_tarball.rst
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some more typesetting improvements
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Install_windows.rst
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some more typesetting improvements
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Intro.rst
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Intro_features.rst
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Intro_nonfeatures.rst
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Intro_website.rst
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Manual.rst
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Manual_build.rst
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Manual_version.rst
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update lammps.sandia.gov URLs to use https://
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2020-03-12 00:28:28 -04:00 |
Modify.rst
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new doc edits for refactored AtomVec styles
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Modify_atom.rst
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Modify_contribute.rst
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Modify_dump.rst
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Packages.rst
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Packages_details.rst
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add note about dependency on SNAP in the MLIAP overview page
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2020-06-22 19:46:44 -04:00 |
Packages_standard.rst
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Fixed incomplete documentation entries for mliap
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2020-06-22 09:35:16 -06:00 |
Packages_user.rst
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fully integrate and update USER-MESONT docs. Add notes about C++ pair style and download of potential files
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Python_call.rst
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Python_examples.rst
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some more fixups
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Python_head.rst
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Python_library.rst
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import updates to the manual from the progguide branch
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Python_mpi.rst
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Python_overview.rst
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Python_pylammps.rst
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Python_run.rst
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Python_shlib.rst
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update instructions in Python doc section
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2020-04-09 21:47:47 -04:00 |
Python_test.rst
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Run_basics.rst
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Run_options.rst
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Run_output.rst
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Run_windows.rst
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Speed.rst
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update lammps.sandia.gov URLs to use https://
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2020-03-12 00:28:28 -04:00 |
Speed_bench.rst
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Speed_compare.rst
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Speed_gpu.rst
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Speed_intel.rst
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Speed_kokkos.rst
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update Kokkos related documentation for Kokkos 3.1 and refactor build info a bit
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Speed_measure.rst
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Speed_omp.rst
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Speed_opt.rst
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Speed_packages.rst
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2020-04-10 23:20:10 -04:00 |
Speed_tips.rst
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Tools.rst
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angle_charmm.rst
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angle_class2.rst
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angle_coeff.rst
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angle_cosine.rst
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angle_cosine_buck6d.rst
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angle_cosine_delta.rst
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angle_cosine_periodic.rst
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angle_cosine_shift.rst
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angle_cosine_squared.rst
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angle_cross.rst
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angle_dipole.rst
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angle_fourier.rst
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angle_fourier_simple.rst
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angle_harmonic.rst
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angle_mm3.rst
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angle_none.rst
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angle_sdk.rst
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angle_style.rst
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angle_table.rst
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angles.rst
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atc_add_molecule.rst
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atc_add_species.rst
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atc_boundary_dynamics.rst
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atc_boundary_faceset.rst
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atc_boundary_type.rst
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atc_consistent_fe_initialization.rst
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atc_control_localized_lambda.rst
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atc_control_momentum.rst
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atc_control_thermal.rst
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atc_decomposition.rst
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atc_fix.rst
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atc_fix_flux.rst
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2020-06-14 11:25:02 -04:00 |
atc_hardy_gradients.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
atc_hardy_kernel.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
atc_hardy_on_the_fly.rst
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next batch of converted files
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2020-03-19 14:39:00 -04:00 |
atc_hardy_rates.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
atc_initial.rst
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next batch of converted files
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2020-03-19 14:39:00 -04:00 |
atc_internal_element_set.rst
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add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_internal_quadrature.rst
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add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_kernel_bandwidth.rst
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next batch of converted files
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2020-03-19 14:39:00 -04:00 |
atc_lumped_lambda_solve.rst
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next chunk of converted html files
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2020-03-16 07:34:56 -04:00 |
atc_mask_direction.rst
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next chunk of converted html files
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2020-03-16 07:34:56 -04:00 |
atc_mass_matrix.rst
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final batch of converted AtC doc files
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2020-03-19 15:36:45 -04:00 |
atc_material.rst
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final batch of converted AtC doc files
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2020-03-19 15:36:45 -04:00 |
atc_mesh_add_to_nodeset.rst
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add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_mesh_create.rst
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add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_mesh_create_elementset.rst
|
add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_mesh_create_faceset_box.rst
|
add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_mesh_create_faceset_plane.rst
|
add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_mesh_create_nodeset.rst
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add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_mesh_delete_elements.rst
|
add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_mesh_nodeset_to_elementset.rst
|
add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_mesh_output.rst
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some more converted atc fix_modify docs
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2020-03-18 06:29:17 -04:00 |
atc_mesh_quadrature.rst
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add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_mesh_read.rst
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add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_mesh_write.rst
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add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_output.rst
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some more converted atc fix_modify docs
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2020-03-18 06:29:17 -04:00 |
atc_output_boundary_integral.rst
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some more converted atc fix_modify docs
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2020-03-18 06:29:17 -04:00 |
atc_output_contour_integral.rst
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some more converted atc fix_modify docs
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2020-03-18 06:29:17 -04:00 |
atc_output_nodeset.rst
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some more converted atc fix_modify docs
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2020-03-18 06:29:17 -04:00 |
atc_output_volume_integral.rst
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some more converted atc fix_modify docs
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2020-03-18 06:29:17 -04:00 |
atc_pair_interactions.rst
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next batch of converted files
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2020-03-19 14:39:00 -04:00 |
atc_poisson_solver.rst
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next chunk of converted html files
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2020-03-16 07:34:56 -04:00 |
atc_read_restart.rst
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some more converted atc fix_modify docs
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2020-03-18 06:29:17 -04:00 |
atc_remove_molecule.rst
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final batch of converted AtC doc files
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2020-03-19 15:36:45 -04:00 |
atc_remove_source.rst
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add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_remove_species.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
atc_reset_atomic_reference.rst
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next batch of converted files
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2020-03-19 14:39:00 -04:00 |
atc_reset_time.rst
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next batch of converted files
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2020-03-19 14:39:00 -04:00 |
atc_sample_frequency.rst
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next batch of converted files
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2020-03-19 14:39:00 -04:00 |
atc_set_reference_pe.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
atc_source.rst
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add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_source_integration.rst
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final batch of converted AtC doc files
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2020-03-19 15:36:45 -04:00 |
atc_temperature_definition.rst
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final batch of converted AtC doc files
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2020-03-19 15:36:45 -04:00 |
atc_time_filter.rst
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next chunk of converted html files
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2020-03-16 07:34:56 -04:00 |
atc_time_integration.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
atc_track_displacement.rst
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final batch of converted AtC doc files
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2020-03-19 15:36:45 -04:00 |
atc_unfix.rst
|
add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
|
2020-03-13 11:06:11 -04:00 |
atc_unfix_flux.rst
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add reference to the fix_modify command overview in fix atc docs into all atc subcommand docs
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2020-03-13 11:06:11 -04:00 |
atc_write_atom_weights.rst
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next batch of converted files
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2020-03-19 14:39:00 -04:00 |
atc_write_restart.rst
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some more converted atc fix_modify docs
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2020-03-18 06:29:17 -04:00 |
atom_modify.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
atom_style.rst
|
Merge branch 'master' into feature-cnt
|
2020-05-18 18:23:16 -04:00 |
balance.rst
|
use list-table and figure to have side-by-side images
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2020-04-13 10:30:01 -04:00 |
bond_class2.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
bond_coeff.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
bond_fene.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
bond_fene_expand.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
bond_gromos.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
bond_harmonic.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
bond_harmonic_shift.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
bond_harmonic_shift_cut.rst
|
collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
bond_hybrid.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
bond_mm3.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
bond_morse.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
bond_none.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
bond_nonlinear.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
bond_oxdna.rst
|
fix up some escaped '*' characters in "code-block" sections that do not need to be escaped
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2020-03-24 11:35:21 -04:00 |
bond_quartic.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
bond_style.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
bond_table.rst
|
import updates to the manual from the progguide branch
|
2020-06-14 11:25:02 -04:00 |
bond_write.rst
|
document the use and generation of "DATE:" and "UNITS:" tags
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2020-06-14 14:41:04 -04:00 |
bond_zero.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
bonds.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
boundary.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
box.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
change_box.rst
|
document the image flag reset for switching boundaries
|
2020-04-27 10:51:53 -04:00 |
clear.rst
|
collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
comm_modify.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
comm_style.rst
|
collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
commands_list.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
compute.rst
|
Merge branch 'master' into feature-cnt
|
2020-05-18 18:23:16 -04:00 |
compute_ackland_atom.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
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2020-03-12 01:11:38 -04:00 |
compute_adf.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
compute_angle.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
compute_angle_local.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
compute_angmom_chunk.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_basal_atom.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_body_local.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_bond.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_bond_local.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_centro_atom.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_chunk_atom.rst
|
import updates to the manual from the progguide branch
|
2020-06-14 11:25:02 -04:00 |
compute_chunk_spread_atom.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
compute_cluster_atom.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_cna_atom.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_cnp_atom.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_com.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_com_chunk.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_contact_atom.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_coord_atom.rst
|
import updates to the manual from the progguide branch
|
2020-06-14 11:25:02 -04:00 |
compute_damage_atom.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
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2020-03-12 01:11:38 -04:00 |
compute_dihedral.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_dihedral_local.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_dilatation_atom.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_dipole_chunk.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_displace_atom.rst
|
import updates to the manual from the progguide branch
|
2020-06-14 11:25:02 -04:00 |
compute_dpd.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_dpd_atom.rst
|
more conversion of parsed-literal to code-block and a bunch of other issues
|
2020-03-12 08:11:10 -04:00 |
compute_edpd_temp_atom.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_entropy_atom.rst
|
convert more LAMMPS script examples to use code-block instead of parsed-literal
|
2020-03-12 01:11:38 -04:00 |
compute_erotate_asphere.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_erotate_rigid.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_erotate_sphere.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_erotate_sphere_atom.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
|
2020-03-12 01:56:13 -04:00 |
compute_event_displace.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_fep.rst
|
import updates to the manual from the progguide branch
|
2020-06-14 11:25:02 -04:00 |
compute_global_atom.rst
|
some more fixups
|
2020-03-13 17:02:59 -04:00 |
compute_group_group.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
compute_gyration.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_gyration_chunk.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_gyration_shape.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
|
2020-03-12 01:56:13 -04:00 |
compute_gyration_shape_chunk.rst
|
fix typo
|
2020-05-21 01:13:03 -04:00 |
compute_heat_flux.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_hexorder_atom.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_hma.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_improper.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_improper_local.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_inertia_chunk.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_ke.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_ke_atom.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_ke_atom_eff.rst
|
collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
compute_ke_eff.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
compute_ke_rigid.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
|
2020-03-12 01:56:13 -04:00 |
compute_mesont.rst
|
Fix whitespace
|
2020-06-16 07:20:09 -04:00 |
compute_modify.rst
|
collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
compute_momentum.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_msd.rst
|
import updates to the manual from the progguide branch
|
2020-06-14 11:25:02 -04:00 |
compute_msd_chunk.rst
|
import updates to the manual from the progguide branch
|
2020-06-14 11:25:02 -04:00 |
compute_msd_nongauss.rst
|
import updates to the manual from the progguide branch
|
2020-06-14 11:25:02 -04:00 |
compute_omega_chunk.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_orientorder_atom.rst
|
Merge branch 'master' of https://github.com/lammps/lammps into orientorder-components-parity
|
2020-06-19 14:32:00 -06:00 |
compute_pair.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_pair_local.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_pe.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_pe_atom.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_plasticity_atom.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_pressure.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_pressure_cylinder.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_pressure_uef.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
|
2020-03-12 01:56:13 -04:00 |
compute_property_atom.rst
|
Fix whitespace
|
2020-06-16 07:20:09 -04:00 |
compute_property_chunk.rst
|
import updates to the manual from the progguide branch
|
2020-06-14 11:25:02 -04:00 |
compute_property_local.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
|
2020-03-12 01:56:13 -04:00 |
compute_ptm_atom.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_rdf.rst
|
import updates to the manual from the progguide branch
|
2020-06-14 11:25:02 -04:00 |
compute_reduce.rst
|
some more fixups
|
2020-03-13 17:02:59 -04:00 |
compute_reduce_chunk.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_rigid_local.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_saed.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_slice.rst
|
some more fixups
|
2020-03-13 17:02:59 -04:00 |
compute_smd_contact_radius.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_smd_damage.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_smd_hourglass_error.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
compute_smd_internal_energy.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
|
2020-03-12 01:56:13 -04:00 |
compute_smd_plastic_strain.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_smd_plastic_strain_rate.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_smd_rho.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_smd_tlsph_defgrad.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_smd_tlsph_dt.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
|
2020-03-12 01:56:13 -04:00 |
compute_smd_tlsph_num_neighs.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
|
2020-03-12 01:56:13 -04:00 |
compute_smd_tlsph_shape.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
|
2020-03-12 01:56:13 -04:00 |
compute_smd_tlsph_strain.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
|
2020-03-12 01:56:13 -04:00 |
compute_smd_tlsph_strain_rate.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
|
2020-03-12 01:56:13 -04:00 |
compute_smd_tlsph_stress.rst
|
convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_smd_triangle_vertices.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
compute_smd_ulsph_num_neighs.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
compute_smd_ulsph_strain.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
compute_smd_ulsph_strain_rate.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
compute_smd_ulsph_stress.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
compute_smd_vol.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_sna_atom.rst
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Fixed incomplete documentation entries for mliap
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2020-06-22 09:35:16 -06:00 |
compute_sph_e_atom.rst
|
renaming of variables and command names in USER-SPH
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2020-04-30 16:40:09 -06:00 |
compute_sph_rho_atom.rst
|
renaming of variables and command names in USER-SPH
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2020-04-30 16:40:09 -06:00 |
compute_sph_t_atom.rst
|
renaming of variables and command names in USER-SPH
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2020-04-30 16:40:09 -06:00 |
compute_spin.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
compute_stress_atom.rst
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add more explicit note about lack of support for pair styles in compute centroid/stress/atom
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2020-04-21 12:44:13 -04:00 |
compute_stress_mop.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
compute_tally.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
compute_tdpd_cc_atom.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
compute_temp_asphere.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_body.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_chunk.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_com.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_cs.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
compute_temp_deform.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_deform_eff.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_drude.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
compute_temp_eff.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_partial.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_profile.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_ramp.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_region.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_region_eff.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_rotate.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_sphere.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_temp_uef.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_ti.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
compute_torque_chunk.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_vacf.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
compute_vcm_chunk.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
compute_viscosity_cos.rst
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Minor fix in doc
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2020-04-30 19:00:37 +02:00 |
compute_voronoi_atom.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
compute_xrd.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
computes.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
create_atoms.rst
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replace "xxxn't" with "xxx not"
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2020-03-18 07:02:34 -04:00 |
create_bonds.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
create_box.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
delete_atoms.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
delete_bonds.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dielectric.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
dihedral_charmm.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
dihedral_class2.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
dihedral_coeff.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
dihedral_cosine_shift_exp.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
dihedral_fourier.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dihedral_harmonic.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
dihedral_helix.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
dihedral_hybrid.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dihedral_multi_harmonic.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
dihedral_nharmonic.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dihedral_none.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
dihedral_opls.rst
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
dihedral_quadratic.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dihedral_spherical.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dihedral_style.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dihedral_table.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
dihedral_table_cut.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
dihedral_zero.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dihedrals.rst
|
collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
dimension.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
displace_atoms.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dump.rst
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replace "xxxn't" with "xxx not"
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2020-03-18 07:02:34 -04:00 |
dump_adios.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dump_cfg_uef.rst
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
dump_h5md.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dump_image.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
dump_modify.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
dump_molfile.rst
|
more conversion of parsed-literal to code-block and a bunch of other issues
|
2020-03-12 08:11:10 -04:00 |
dump_netcdf.rst
|
more conversion of parsed-literal to code-block and a bunch of other issues
|
2020-03-12 08:11:10 -04:00 |
dump_vtk.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
dynamical_matrix.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
echo.rst
|
more conversion of parsed-literal to code-block and a bunch of other issues
|
2020-03-12 08:11:10 -04:00 |
fix.rst
|
fix up typesetting of docs, spelling, and integrated into fix command table
|
2020-06-06 10:01:07 -04:00 |
fix_accelerate_cos.rst
|
add add check to refuse running with 2d systems and document it.
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2020-04-30 12:46:16 -04:00 |
fix_adapt.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_adapt_fep.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_addforce.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_addtorque.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_append_atoms.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_atc.rst
|
final batch of converted AtC doc files
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2020-03-19 15:36:45 -04:00 |
fix_atom_swap.rst
|
replace "xxxn't" with "xxx not"
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2020-03-18 07:02:34 -04:00 |
fix_ave_atom.rst
|
some more fixups
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2020-03-13 17:02:59 -04:00 |
fix_ave_chunk.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_ave_correlate.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_ave_correlate_long.rst
|
manually incorporate fixes for ave/correlate/long from PR #2066
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2020-05-04 08:18:56 -04:00 |
fix_ave_histo.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_ave_time.rst
|
some more fixups
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2020-03-13 17:02:59 -04:00 |
fix_aveforce.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_balance.rst
|
use list-table and figure to have side-by-side images
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2020-04-13 10:30:01 -04:00 |
fix_bocs.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_bond_break.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_bond_create.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_bond_react.rst
|
fix permissions
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2020-06-06 10:44:09 -04:00 |
fix_bond_swap.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_box_relax.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_client_md.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_cmap.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_colvars.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_controller.rst
|
some more fixups
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2020-03-13 17:02:59 -04:00 |
fix_deform.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_deposit.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_dpd_energy.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_dpd_source.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_drag.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
fix_drude.rst
|
finish updating docs for fixes using code-block plus a few other improvements
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2020-03-11 12:58:57 -04:00 |
fix_drude_transform.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
fix_dt_reset.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_efield.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_ehex.rst
|
replace "xxxn't" with "xxx not"
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2020-03-18 07:02:34 -04:00 |
fix_electron_stopping.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_enforce2d.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_eos_cv.rst
|
finish updating docs for fixes using code-block plus a few other improvements
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2020-03-11 12:58:57 -04:00 |
fix_eos_table.rst
|
import updates to the manual from the progguide branch
|
2020-06-14 11:25:02 -04:00 |
fix_eos_table_rx.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_evaporate.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_external.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_ffl.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_filter_corotate.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_flow_gauss.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_freeze.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_gcmc.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_gld.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_gle.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
fix_gravity.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_grem.rst
|
replace '\_' with '_' in plain text where possible
|
2020-03-13 16:34:57 -04:00 |
fix_halt.rst
|
support diskfree option to "fix halt" also on BSD variants
|
2020-05-03 02:34:40 -04:00 |
fix_heat.rst
|
use proper units (fmsec -> fs, psec -> ps and so on)
|
2020-05-21 01:13:15 -04:00 |
fix_hyper_global.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_hyper_local.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_imd.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_indent.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_ipi.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_langevin.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_langevin_drude.rst
|
use proper units (fmsec -> fs, psec -> ps and so on)
|
2020-05-21 01:13:15 -04:00 |
fix_langevin_eff.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_langevin_spin.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_latte.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_lb_fluid.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_lb_momentum.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_lb_pc.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_lb_rigid_pc_sphere.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_lb_viscous.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_lineforce.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_manifoldforce.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_meso_move.rst
|
use proper units (fmsec -> fs, psec -> ps and so on)
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2020-05-21 01:13:15 -04:00 |
fix_modify.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_modify_atc_commands.rst
|
Convert a first set of AtC documentation html files to rst and add infrastructure files and links
|
2020-03-12 14:26:04 -04:00 |
fix_momentum.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_move.rst
|
use proper units (fmsec -> fs, psec -> ps and so on)
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2020-05-21 01:13:15 -04:00 |
fix_mscg.rst
|
finish updating docs for fixes using code-block plus a few other improvements
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2020-03-11 12:58:57 -04:00 |
fix_msst.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_mvv_dpd.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_neb.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_neb_spin.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_nh.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_nh_eff.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_nh_uef.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_nph_asphere.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_nph_body.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_nph_sphere.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_nphug.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_npt_asphere.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_npt_body.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_npt_cauchy.rst
|
import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
fix_npt_sphere.rst
|
replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_numdiff.rst
|
one more change
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2020-03-20 07:27:28 -06:00 |
fix_nve.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_nve_asphere.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_nve_asphere_noforce.rst
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replace '\_' with '_' in plain text where possible
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2020-03-13 16:34:57 -04:00 |
fix_nve_awpmd.rst
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fix_nve_body.rst
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2020-03-13 16:34:57 -04:00 |
fix_nve_dot.rst
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finish updating docs for fixes using code-block plus a few other improvements
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2020-03-11 12:58:57 -04:00 |
fix_nve_dotc_langevin.rst
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use proper units (fmsec -> fs, psec -> ps and so on)
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fix_nve_eff.rst
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fix_nve_limit.rst
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fix_nve_line.rst
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fix_nve_manifold_rattle.rst
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fix_nve_noforce.rst
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fix_nve_sphere.rst
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fix_nve_spin.rst
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fix_nve_tri.rst
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fix_nvk.rst
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fix_nvt_body.rst
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fix_nvt_manifold_rattle.rst
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fix_nvt_sllod.rst
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fix_nvt_sllod_eff.rst
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fix_nvt_sphere.rst
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fix_oneway.rst
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2020-03-13 16:34:57 -04:00 |
fix_orient.rst
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2020-06-07 23:01:48 +02:00 |
fix_orient_eco.rst
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update to fix orient/eco from the authors
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fix_phonon.rst
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2020-03-13 16:34:57 -04:00 |
fix_pimd.rst
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2020-03-11 12:58:57 -04:00 |
fix_planeforce.rst
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fix_plumed.rst
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2020-03-13 16:34:57 -04:00 |
fix_poems.rst
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fix_pour.rst
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fix_precession_spin.rst
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fix_press_berendsen.rst
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fix_print.rst
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fix_propel_self.rst
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fix_property_atom.rst
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fix_python_invoke.rst
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fix_python_move.rst
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fix_qeq_comb.rst
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fix_qeq_reax.rst
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fix_qmmm.rst
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fix_qtb.rst
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fix_reaxc_species.rst
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fix_recenter.rst
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2020-06-14 11:25:02 -04:00 |
fix_restrain.rst
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2020-06-14 11:25:02 -04:00 |
fix_rhok.rst
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fix_rigid.rst
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fix_rigid_meso.rst
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fix_rx.rst
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fix_saed_vtk.rst
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fix_setforce.rst
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fix_shardlow.rst
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fix_smd.rst
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fix_smd_adjust_dt.rst
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fix_smd_integrate_tlsph.rst
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fix_smd_integrate_ulsph.rst
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fix_smd_move_triangulated_surface.rst
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fix_smd_setvel.rst
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fix_smd_wall_surface.rst
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2020-03-13 16:34:57 -04:00 |
fix_sph.rst
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USER-SPH doc tweak
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2020-04-30 17:08:05 -06:00 |
fix_sph_stationary.rst
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renaming of variables and command names in USER-SPH
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2020-04-30 16:40:09 -06:00 |
fix_spring.rst
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fix_spring_chunk.rst
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fix_spring_rg.rst
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fix_spring_self.rst
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fix_srd.rst
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fix_store_force.rst
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fix_store_state.rst
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fix_temp_berendsen.rst
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fix_temp_csvr.rst
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fix_temp_rescale.rst
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fix_tfmc.rst
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fix_thermal_conductivity.rst
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fix_ti_spring.rst
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fix_tmd.rst
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fix_ttm.rst
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fix_tune_kspace.rst
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2020-03-13 16:34:57 -04:00 |
fix_vector.rst
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fix_viscosity.rst
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fix_wall_body_polyhedron.rst
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fix_wall_ees.rst
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fix_wall_gran.rst
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fix_wall_gran_region.rst
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fix_wall_piston.rst
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fixes.rst
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group.rst
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group2ndx.rst
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more conversion of parsed-literal to code-block and a bunch of other issues
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hyper.rst
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if.rst
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improper_class2.rst
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improper_coeff.rst
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improper_cossq.rst
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improper_harmonic.rst
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improper_inversion_harmonic.rst
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improper_none.rst
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improper_ring.rst
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improper_sqdistharm.rst
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impropers.rst
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include.rst
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more conversion of parsed-literal to code-block and a bunch of other issues
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info.rst
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more conversion of parsed-literal to code-block and a bunch of other issues
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2020-03-12 08:11:10 -04:00 |
jump.rst
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kim_commands.rst
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kspace_modify.rst
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kspace_style.rst
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label.rst
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lattice.rst
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log.rst
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more conversion of parsed-literal to code-block and a bunch of other issues
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2020-03-12 08:11:10 -04:00 |
mass.rst
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2020-06-14 11:25:02 -04:00 |
message.rst
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2020-06-14 11:25:02 -04:00 |
min_modify.rst
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min_spin.rst
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min_style.rst
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minimize.rst
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molecule.rst
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neb.rst
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neb_spin.rst
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neigh_modify.rst
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neighbor.rst
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more conversion of parsed-literal to code-block and a bunch of other issues
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newton.rst
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next.rst
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package.rst
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pair_adp.rst
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pair_agni.rst
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pair_airebo.rst
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pair_atm.rst
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pair_awpmd.rst
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pair_beck.rst
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pair_body_nparticle.rst
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pair_body_rounded_polygon.rst
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pair_body_rounded_polyhedron.rst
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pair_bop.rst
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pair_born.rst
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pair_brownian.rst
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pair_buck.rst
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pair_buck6d_coul_gauss.rst
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pair_buck_long.rst
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pair_charmm.rst
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2020-06-14 11:25:02 -04:00 |
pair_class2.rst
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fix up some escaped '*' characters in "code-block" sections that do not need to be escaped
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2020-03-24 11:35:21 -04:00 |
pair_coeff.rst
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Merge pull request #2156 from akohlmey/collected-small-changes
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2020-06-15 14:40:27 -04:00 |
pair_colloid.rst
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pair_comb.rst
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2020-06-14 11:25:02 -04:00 |
pair_cosine_squared.rst
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pair_coul.rst
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pair_coul_diel.rst
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pair_coul_shield.rst
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pair_coul_slater.rst
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update coul/slater docs to align with recent changes in upstream
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2020-03-18 21:07:57 -04:00 |
pair_cs.rst
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pair_dipole.rst
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pair_dpd.rst
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pair_dpd_fdt.rst
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pair_drip.rst
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pair_dsmc.rst
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pair_e3b.rst
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pair_eam.rst
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pair_edip.rst
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pair_eff.rst
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2020-06-14 11:25:02 -04:00 |
pair_eim.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
pair_exp6_rx.rst
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pair_extep.rst
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pair_fep_soft.rst
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pair_gauss.rst
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pair_gayberne.rst
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pair_gran.rst
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2020-06-14 11:25:02 -04:00 |
pair_granular.rst
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pair_gromacs.rst
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pair_gw.rst
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2020-06-14 11:25:02 -04:00 |
pair_hbond_dreiding.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
pair_hybrid.rst
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2020-06-14 11:25:02 -04:00 |
pair_ilp_graphene_hbn.rst
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pair_kim.rst
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pair_kolmogorov_crespi_full.rst
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pair_kolmogorov_crespi_z.rst
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2020-03-13 16:34:57 -04:00 |
pair_lcbop.rst
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pair_lebedeva_z.rst
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pair_line_lj.rst
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pair_list.rst
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pair_lj.rst
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pair_lj96.rst
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pair_lj_cubic.rst
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pair_lj_expand.rst
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pair_lj_long.rst
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pair_lj_smooth.rst
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pair_lj_smooth_linear.rst
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pair_lj_switch3_coulgauss_long.rst
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pair_local_density.rst
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2020-03-13 16:34:57 -04:00 |
pair_lubricate.rst
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Fix Formatting of "Examples" Label
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2020-06-07 23:27:02 +02:00 |
pair_lubricateU.rst
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Fix "Example" Tag formatting
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2020-06-08 04:21:24 +02:00 |
pair_mdf.rst
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make formatting consistent with lj/cut
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2020-06-17 15:03:36 -04:00 |
pair_meam_spline.rst
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2020-06-14 11:25:02 -04:00 |
pair_meam_sw_spline.rst
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import updates to the manual from the progguide branch
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pair_meamc.rst
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import updates to the manual from the progguide branch
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2020-06-14 11:25:02 -04:00 |
pair_mesocnt.rst
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move pair style mesocnt from USER-MISC to (upcoming) USER-MESONT package
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2020-06-11 17:41:19 -04:00 |
pair_mesodpd.rst
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2020-03-13 16:34:57 -04:00 |
pair_mesont_tpm.rst
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2020-06-16 07:20:09 -04:00 |
pair_mgpt.rst
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pair_mie.rst
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2020-03-13 16:34:57 -04:00 |
pair_mliap.rst
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Fixed a few minor problems
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2020-06-22 09:11:38 -06:00 |
pair_mm3_switch3_coulgauss_long.rst
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pair_modify.rst
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2020-03-13 16:34:57 -04:00 |
pair_momb.rst
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update docs to cleanly translate
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pair_morse.rst
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pair_multi_lucy.rst
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pair_multi_lucy_rx.rst
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pair_nb3b_harmonic.rst
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pair_nm.rst
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pair_none.rst
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pair_oxdna.rst
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pair_oxdna2.rst
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pair_oxrna2.rst
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pair_peri.rst
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pair_polymorphic.rst
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2020-06-14 11:25:02 -04:00 |
pair_python.rst
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fix up some escaped '*' characters in "code-block" sections that do not need to be escaped
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2020-03-24 11:35:21 -04:00 |
pair_quip.rst
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2020-03-13 16:34:57 -04:00 |
pair_reaxc.rst
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make MIN_HBONDS define for reax/c configurable via an input option
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2020-05-01 23:22:48 -04:00 |
pair_resquared.rst
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some more fixups
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2020-03-13 17:02:59 -04:00 |
pair_sdk.rst
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pair_sdpd_taitwater_isothermal.rst
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pair_smd_hertz.rst
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pair_smd_tlsph.rst
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pair_smd_ulsph.rst
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pair_smtbq.rst
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2020-03-13 16:34:57 -04:00 |
pair_snap.rst
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pair_soft.rst
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pair_sph_heatconduction.rst
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pair_sph_idealgas.rst
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pair_sph_lj.rst
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pair_sph_rhosum.rst
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pair_sph_taitwater.rst
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pair_sph_taitwater_morris.rst
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pair_spin_dipole.rst
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pair_spin_dmi.rst
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pair_spin_exchange.rst
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pair_spin_magelec.rst
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pair_spin_neel.rst
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pair_srp.rst
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2020-03-13 16:34:57 -04:00 |
pair_style.rst
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2020-06-22 09:35:16 -06:00 |
pair_sw.rst
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2020-06-14 11:25:02 -04:00 |
pair_table.rst
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Merge pull request #2156 from akohlmey/collected-small-changes
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2020-06-15 14:40:27 -04:00 |
pair_table_rx.rst
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pair_tersoff.rst
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pair_tersoff_mod.rst
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2020-06-14 11:25:02 -04:00 |
pair_tersoff_zbl.rst
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pair_thole.rst
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pair_tri_lj.rst
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pair_ufm.rst
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pair_vashishta.rst
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2020-06-14 11:25:02 -04:00 |
pair_write.rst
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document the use and generation of "DATE:" and "UNITS:" tags
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pair_yukawa.rst
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pair_yukawa_colloid.rst
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pair_zbl.rst
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pair_zero.rst
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pairs.rst
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partition.rst
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2020-06-14 11:25:02 -04:00 |
prd.rst
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clarified AMD quote from review paper
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print.rst
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processors.rst
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python.rst
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quit.rst
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read_data.rst
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read_dump.rst
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read_restart.rst
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region.rst
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replicate.rst
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rerun.rst
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reset_ids.rst
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reset_timestep.rst
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restart.rst
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run.rst
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2020-06-14 11:25:02 -04:00 |
run_style.rst
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server.rst
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server_mc.rst
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server_md.rst
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set.rst
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shell.rst
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special_bonds.rst
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suffix.rst
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tad.rst
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clarified AMD quote from review paper
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temper.rst
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temper_grem.rst
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temper_npt.rst
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thermo.rst
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thermo_modify.rst
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thermo_style.rst
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third_order.rst
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timer.rst
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more conversion of parsed-literal to code-block and a bunch of other issues
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2020-03-12 08:11:10 -04:00 |
timestep.rst
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use proper units (fmsec -> fs, psec -> ps and so on)
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uncompute.rst
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more conversion of parsed-literal to code-block and a bunch of other issues
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2020-03-12 08:11:10 -04:00 |
undump.rst
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more conversion of parsed-literal to code-block and a bunch of other issues
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2020-03-12 08:11:10 -04:00 |
unfix.rst
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more conversion of parsed-literal to code-block and a bunch of other issues
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2020-03-12 08:11:10 -04:00 |
units.rst
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use proper units (fmsec -> fs, psec -> ps and so on)
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variable.rst
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2020-06-14 11:25:02 -04:00 |
velocity.rst
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write_coeff.rst
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write_data.rst
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write_dump.rst
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write_restart.rst
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2020-06-14 11:25:02 -04:00 |