lammps/doc/src/fix_halt.rst

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.. index:: fix halt
fix halt command
================
Syntax
""""""
.. parsed-literal::
fix ID group-ID halt N attribute operator avalue keyword value ...
* ID, group-ID are documented in :doc:`fix <fix>` command
* halt = style name of this fix command
* N = check halt condition every N steps
* attribute = *bondmax* or *tlimit* or v_name
.. parsed-literal::
bondmax = length of longest bond in the system (in length units)
tlimit = elapsed CPU time (in seconds)
diskfree = free disk space (in megabytes)
v_name = name of :doc:`equal-style variable <variable>`
* operator = "<" or "<=" or ">" or ">=" or "==" or "!=" or "\|\^"
* avalue = numeric value to compare attribute to
* zero or more keyword/value pairs may be appended
* keyword = *error* or *message* or *path*
.. parsed-literal::
*error* value = *hard* or *soft* or *continue*
*message* value = *yes* or *no*
*path* value = path to check for free space (may be in quotes)
Examples
""""""""
.. code-block:: LAMMPS
fix 10 all halt 1 bondmax > 1.5
fix 10 all halt 10 v_myCheck != 0 error soft
fix 10 all halt 100 diskfree < 100000.0 path "dump storage/."
Description
"""""""""""
Check a condition every N steps during a simulation run. N must be >=1.
If the condition is met, exit the run. In this context a "run" can be
dynamics or minimization iterations, as specified by the :doc:`run
<run>` or :doc:`minimize <minimize>` command.
The specified group-ID is ignored by this fix.
The specified *attribute* can be one of the options listed above, namely
*bondmax*, *tlimit*\ , *diskfree*\ , or an :doc:`equal-style variable
<variable>` referenced as *v_name*, where "name" is the name of a
variable that has been defined previously in the input script.
The *bondmax* attribute will loop over all bonds in the system,
compute their current lengths, and set *attribute* to the longest bond
distance.
The *tlimit* attribute queries the elapsed CPU time (in seconds) since
the current run began, and sets *attribute* to that value. This is an
alternative way to limit the length of a simulation run, similar to
the :doc:`timer <timer>` timeout command. There are two differences in
using this method versus the timer command option. The first is that
the clock starts at the beginning of the current run (not when the
timer or fix command is specified), so that any setup time for the run
is not included in the elapsed time. The second is that the timer
invocation and syncing across all processors (via MPI_Allreduce) is
not performed once every *N* steps by this command. Instead it is
performed (typically) only a small number of times and the elapsed
times are used to predict when the end-of-the-run will be. Both of
these attributes can be useful when performing benchmark calculations
for a desired length of time with minimal overhead. For example, if
a run is performing 1000s of timesteps/sec, the overhead for syncing
the timer frequently across a large number of processors may be
non-negligible.
The *diskfree* attribute will check for available disk space (in
megabytes) on supported operating systems. By default it will
check the file system of the current working directory. This
can be changed with the optional *path* keyword, which will take
the path to a file or folder on the file system to be checked
as argument. This path must be given with single or double quotes,
if it contains blanks or other special characters (like \$).
Equal-style variables evaluate to a numeric value. See the
:doc:`variable <variable>` command for a description. They calculate
formulas which can involve mathematical operations, atom properties,
group properties, thermodynamic properties, global values calculated
by a :doc:`compute <compute>` or :doc:`fix <fix>`, or references to other
:doc:`variables <variable>`. Thus they are a very general means of
computing some attribute of the current system. For example, the
following "bondmax" variable will calculate the same quantity as the
hstyle = bondmax option.
.. code-block:: LAMMPS
compute bdist all bond/local dist
compute bmax all reduce max c_bdist
variable bondmax equal c_bmax
Thus these two versions of a fix halt command will do the same thing:
.. code-block:: LAMMPS
fix 10 all halt 1 bondmax > 1.5
fix 10 all halt 1 v_bondmax > 1.5
The version with "bondmax" will just run somewhat faster, due to less
overhead in computing bond lengths and not storing them in a separate
compute.
A variable can be used to implement a large variety of conditions,
including to stop when a specific file exists. Example:
.. code-block:: LAMMPS
variable exit equal is_file(EXIT)
fix 10 all halt 100 v_exit != 0 error soft
Will stop the current run command when a file ``EXIT`` is created
in the current working directory. The condition can be cleared
by removing the file through the :doc:`shell <shell>` command.
The choice of operators listed above are the usual comparison
operators. The XOR operation (exclusive or) is also included as "\|\^".
In this context, XOR means that if either the attribute or avalue is
0.0 and the other is non-zero, then the result is "true". Otherwise
it is "false".
The specified *avalue* must be a numeric value.
----------
The optional *error* keyword determines how the current run is halted.
If its value is *hard*\ , then LAMMPS will stop with an error message.
If its value is *soft*\ , LAMMPS will exit the current run, but continue
to execute subsequent commands in the input script. However,
additional :doc:`run <run>` or :doc:`minimize <minimize>` commands will be
skipped. For example, this allows a script to output the current
state of the system, e.g. via a :doc:`write_dump <write_dump>` or
:doc:`write_restart <write_restart>` command.
If its value is *continue*\ , the behavior is the same as for *soft*\ ,
except subsequent :doc:`run <run>` or :doc:`minimize <minimize>` commands
are executed. This allows your script to remedy the condition that
triggered the halt, if necessary. Note that you may wish use the
:doc:`unfix <unfix>` command on the fix halt ID, so that the same
condition is not immediately triggered in a subsequent run.
The optional *message* keyword determines whether a message is printed
to the screen and logfile when the halt condition is triggered. If
*message* is set to yes, a one line message with the values that
triggered the halt is printed. If *message* is set to no, no message
is printed; the run simply exits. The latter may be desirable for
post-processing tools that extract thermodynamic information from log
files.
Restart, fix_modify, output, run start/stop, minimize info
"""""""""""""""""""""""""""""""""""""""""""""""""""""""""""
No information about this fix is written to :doc:`binary restart files <restart>`. None of the :doc:`fix_modify <fix_modify>` options
are relevant to this fix. No global or per-atom quantities are stored
by this fix for access by various :doc:`output commands <Howto_output>`.
No parameter of this fix can be used with the *start/stop* keywords of
the :doc:`run <run>` command.
Restrictions
""""""""""""
The *diskfree* attribute is currently only supported on Linux, MacOSX, and BSD.
Related commands
""""""""""""""""
:doc:`variable <variable>`
Default
"""""""
The option defaults are error = hard, message = yes, and path = ".".