forked from lijiext/lammps
185 lines
7.4 KiB
Plaintext
185 lines
7.4 KiB
Plaintext
"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
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:link(lws,http://lammps.sandia.gov)
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:link(ld,Manual.html)
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:link(lc,Section_commands.html#comm)
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:line
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fix wall/reflect command :h3
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fix wall/reflect/kk command :h3
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[Syntax:]
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fix ID group-ID wall/reflect face arg ... keyword value ... :pre
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ID, group-ID are documented in "fix"_fix.html command :ulb,l
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wall/reflect = style name of this fix command :l
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one or more face/arg pairs may be appended :l
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face = {xlo} or {xhi} or {ylo} or {yhi} or {zlo} or {zhi} :l
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{xlo},{ylo},{zlo} arg = EDGE or constant or variable
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EDGE = current lo edge of simulation box
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constant = number like 0.0 or -30.0 (distance units)
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variable = "equal-style variable"_variable.html like v_x or v_wiggle
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{xhi},{yhi},{zhi} arg = EDGE or constant or variable
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EDGE = current hi edge of simulation box
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constant = number like 50.0 or 100.3 (distance units)
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variable = "equal-style variable"_variable.html like v_x or v_wiggle :pre
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zero or more keyword/value pairs may be appended :l
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keyword = {units} :l
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{units} value = {lattice} or {box}
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{lattice} = the wall position is defined in lattice units
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{box} = the wall position is defined in simulation box units :pre
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:ule
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[Examples:]
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fix xwalls all wall/reflect xlo EDGE xhi EDGE
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fix walls all wall/reflect xlo 0.0 ylo 10.0 units box
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fix top all wall/reflect zhi v_pressdown :pre
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[Description:]
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Bound the simulation with one or more walls which reflect particles
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in the specified group when they attempt to move thru them.
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Reflection means that if an atom moves outside the wall on a timestep
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by a distance delta (e.g. due to "fix nve"_fix_nve.html), then it is
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put back inside the face by the same delta, and the sign of the
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corresponding component of its velocity is flipped.
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When used in conjunction with "fix nve"_fix_nve.html and "run_style
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verlet"_run_style.html, the resultant time-integration algorithm is
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equivalent to the primitive splitting algorithm (PSA) described by
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"Bond"_#Bond. Because each reflection event divides
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the corresponding timestep asymmetrically, energy conservation is only
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satisfied to O(dt), rather than to O(dt^2) as it would be for
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velocity-Verlet integration without reflective walls.
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Up to 6 walls or faces can be specified in a single command: {xlo},
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{xhi}, {ylo}, {yhi}, {zlo}, {zhi}. A {lo} face reflects particles
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that move to a coordinate less than the wall position, back in the
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{hi} direction. A {hi} face reflects particles that move to a
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coordinate higher than the wall position, back in the {lo} direction.
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The position of each wall can be specified in one of 3 ways: as the
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EDGE of the simulation box, as a constant value, or as a variable. If
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EDGE is used, then the corresponding boundary of the current
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simulation box is used. If a numeric constant is specified then the
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wall is placed at that position in the appropriate dimension (x, y, or
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z). In both the EDGE and constant cases, the wall will never move.
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If the wall position is a variable, it should be specified as v_name,
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where name is an "equal-style variable"_variable.html name. In this
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case the variable is evaluated each timestep and the result becomes
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the current position of the reflecting wall. Equal-style variables
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can specify formulas with various mathematical functions, and include
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"thermo_style"_thermo_style.html command keywords for the simulation
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box parameters and timestep and elapsed time. Thus it is easy to
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specify a time-dependent wall position.
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The {units} keyword determines the meaning of the distance units used
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to define a wall position, but only when a numeric constant or
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variable is used. It is not relevant when EDGE is used to specify a
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face position. In the variable case, the variable is assumed to
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produce a value compatible with the {units} setting you specify.
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A {box} value selects standard distance units as defined by the
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"units"_units.html command, e.g. Angstroms for units = real or metal.
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A {lattice} value means the distance units are in lattice spacings.
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The "lattice"_lattice.html command must have been previously used to
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define the lattice spacings.
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:line
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Here are examples of variable definitions that move the wall position
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in a time-dependent fashion using equal-style
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"variables"_variable.html.
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variable ramp equal ramp(0,10)
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fix 1 all wall/reflect xlo v_ramp :pre
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variable linear equal vdisplace(0,20)
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fix 1 all wall/reflect xlo v_linear :pre
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variable wiggle equal swiggle(0.0,5.0,3.0)
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fix 1 all wall/reflect xlo v_wiggle :pre
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variable wiggle equal cwiggle(0.0,5.0,3.0)
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fix 1 all wall/reflect xlo v_wiggle :pre
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The ramp(lo,hi) function adjusts the wall position linearly from lo to
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hi over the course of a run. The vdisplace(c0,velocity) function does
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something similar using the equation position = c0 + velocity*delta,
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where delta is the elapsed time.
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The swiggle(c0,A,period) function causes the wall position to
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oscillate sinusoidally according to this equation, where omega = 2 PI
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/ period:
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position = c0 + A sin(omega*delta) :pre
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The cwiggle(c0,A,period) function causes the wall position to
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oscillate sinusoidally according to this equation, which will have an
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initial wall velocity of 0.0, and thus may impose a gentler
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perturbation on the particles:
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position = c0 + A (1 - cos(omega*delta)) :pre
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:line
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Styles with a {cuda}, {gpu}, {intel}, {kk}, {omp}, or {opt} suffix are
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functionally the same as the corresponding style without the suffix.
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They have been optimized to run faster, depending on your available
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hardware, as discussed in "Section_accelerate"_Section_accelerate.html
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of the manual. The accelerated styles take the same arguments and
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should produce the same results, except for round-off and precision
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issues.
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These accelerated styles are part of the USER-CUDA, GPU, USER-INTEL,
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KOKKOS, USER-OMP and OPT packages, respectively. They are only
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enabled if LAMMPS was built with those packages. See the "Making
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LAMMPS"_Section_start.html#start_3 section for more info.
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You can specify the accelerated styles explicitly in your input script
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by including their suffix, or you can use the "-suffix command-line
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switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
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use the "suffix"_suffix.html command in your input script.
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See "Section_accelerate"_Section_accelerate.html of the manual for
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more instructions on how to use the accelerated styles effectively.
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:line
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[Restart, fix_modify, output, run start/stop, minimize info:]
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No information about this fix is written to "binary restart
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files"_restart.html. None of the "fix_modify"_fix_modify.html options
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are relevant to this fix. No global or per-atom quantities are stored
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by this fix for access by various "output
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commands"_Section_howto.html#howto_15. No parameter of this fix can
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be used with the {start/stop} keywords of the "run"_run.html command.
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This fix is not invoked during "energy minimization"_minimize.html.
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[Restrictions:]
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Any dimension (xyz) that has a reflecting wall must be non-periodic.
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A reflecting wall should not be used with rigid bodies such as those
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defined by a "fix rigid" command. This is because the wall/reflect
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displaces atoms directly rather than exerts a force on them. For
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rigid bodies, use a soft wall instead, such as "fix
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wall/lj93"_fix_wall.html. LAMMPS will flag the use of a rigid
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fix with fix wall/reflect with a warning, but will not generate an
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error.
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[Related commands:]
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"fix wall/lj93"_fix_wall.html, "fix oneway"_fix_oneway.html
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[Default:] none
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:line
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:link(Bond)
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[(Bond)] Bond and Leimkuhler, SIAM J Sci Comput, 30, p 134 (2007).
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