forked from lijiext/lammps
169 lines
6.1 KiB
Plaintext
169 lines
6.1 KiB
Plaintext
"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
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:link(lws,http://lammps.sandia.gov)
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:link(ld,Manual.html)
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:link(lc,Section_commands.html#comm)
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:line
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pair_style nm/cut command :h3
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pair_style nm/cut/coul/cut command :h3
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pair_style nm/cut/coul/long command :h3
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pair_style nm/cut/omp command :h3
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pair_style nm/cut/coul/cut/omp command :h3
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pair_style nm/cut/coul/long/omp command :h3
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[Syntax:]
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pair_style style args :pre
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style = {nm/cut} or {nm/cut/coul/cut} or {nm/cut/coul/long} :ulb,l
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args = list of arguments for a particular style :l
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{nm/cut} args = cutoff
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cutoff = global cutoff for Pair interactions (distance units)
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{nm/cut/coul/cut} args = cutoff (cutoff2)
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cutoff = global cutoff for Pair (and Coulombic if only 1 arg) (distance units)
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cutoff2 = global cutoff for Coulombic (optional) (distance units)
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{nm/cut/coul/long} args = cutoff (cutoff2)
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cutoff = global cutoff for Pair (and Coulombic if only 1 arg) (distance units)
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cutoff2 = global cutoff for Coulombic (optional) (distance units) :pre
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:ule
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[Examples:]
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pair_style nm/cut 12.0
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pair_coeff * * 0.01 5.4 8.0 7.0
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pair_coeff 1 1 0.01 4.4 7.0 6.0 :pre
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pair_style nm/cut/coul/cut 12.0 15.0
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pair_coeff * * 0.01 5.4 8.0 7.0
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pair_coeff 1 1 0.01 4.4 7.0 6.0 :pre
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pair_style nm/cut/coul/long 12.0 15.0
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pair_coeff * * 0.01 5.4 8.0 7.0
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pair_coeff 1 1 0.01 4.4 7.0 6.0 :pre
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[Description:]
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Style {nm} computes site-site interactions based on the N-M potential
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by "Clarke"_#Clarke, mainly used for ionic liquids. A site can
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represent a single atom or a united-atom site. The energy of an
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interaction has the following form:
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:c,image(Eqs/pair_nm.jpg)
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Rc is the cutoff.
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Style {nm/cut/coul/cut} adds a Coulombic pairwise interaction given by
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:c,image(Eqs/pair_coulomb.jpg)
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where C is an energy-conversion constant, Qi and Qj are the charges on
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the 2 atoms, and epsilon is the dielectric constant which can be set
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by the "dielectric"_dielectric.html command. If one cutoff is
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specified in the pair_style command, it is used for both the NM and
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Coulombic terms. If two cutoffs are specified, they are used as
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cutoffs for the NM and Coulombic terms respectively.
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Styles {nm/cut/coul/long} compute the same
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Coulombic interactions as style {nm/cut/coul/cut} except that an
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additional damping factor is applied to the Coulombic term so it can
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be used in conjunction with the "kspace_style"_kspace_style.html
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command and its {ewald} or {pppm} option. The Coulombic cutoff
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specified for this style means that pairwise interactions within this
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distance are computed directly; interactions outside that distance are
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computed in reciprocal space.
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For all of the {nm} pair styles, the following coefficients must
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be defined for each pair of atoms types
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via the "pair_coeff"_pair_coeff.html command as in the
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examples above, or in the data file or restart files read by the
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"read_data"_read_data.html or "read_restart"_read_restart.html
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commands.
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E0 (energy units)
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r0 (distance units)
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n (unitless)
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m (unitless)
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cutoff1 (distance units)
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cutoff2 (distance units) :ul
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The latter 2 coefficients are optional. If not specified, the global
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NM and Coulombic cutoffs specified in the pair_style command are used.
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If only one cutoff is specified, it is used as the cutoff for both NM
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and Coulombic interactions for this type pair. If both coefficients
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are specified, they are used as the NM and Coulombic cutoffs for this
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type pair. You cannot specify 2 cutoffs for style {nm}, since it
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has no Coulombic terms.
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For {nm/cut/coul/long} only the NM cutoff can be specified since a
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Coulombic cutoff cannot be specified for an individual I,J type pair.
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All type pairs use the same global Coulombic cutoff specified in the
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pair_style command.
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:line
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[Mixing, shift, table, tail correction, restart, rRESPA info]:
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These pair styles do not support mixing. Thus, coefficients for all
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I,J pairs must be specified explicitly.
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All of the {nm} pair styles supports the
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"pair_modify"_pair_modify.html shift option for the energy of the pair
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interaction.
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The {nm/cut/coul/long} pair styles support the
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"pair_modify"_pair_modify.html table option since they can tabulate
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the short-range portion of the long-range Coulombic interaction.
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All of the {nm} pair styles support the "pair_modify"_pair_modify.html
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tail option for adding a long-range tail correction to the energy and
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pressure for the NM portion of the pair interaction.
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All of the {nm} pair styles write their information to "binary restart
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files"_restart.html, so pair_style and pair_coeff commands do not need
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to be specified in an input script that reads a restart file.
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All of the {nm} pair styles can only be used via the {pair} keyword of
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the "run_style respa"_run_style.html command. They do not support the
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{inner}, {middle}, {outer} keywords.
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:line
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Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
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the same as the corresponding style without the suffix. They have
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been optimized to run faster, depending on your available hardware, as
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discussed in "Section_accelerate"_Section_accelerate.html of the
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manual. The accelerated styles take the same arguments and should
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produce the same results, except for round-off and precision issues.
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These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
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packages, respectively. They are only enabled if LAMMPS was built with
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those packages. See the "Making LAMMPS"_Section_start.html#start_3
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section for more info.
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You can specify the accelerated styles explicitly in your input script
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by including their suffix, or you can use the "-suffix command-line
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switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
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use the "suffix"_suffix.html command in your input script.
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See "Section_accelerate"_Section_accelerate.html of the manual for
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more instructions on how to use the accelerated styles effectively.
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[Restrictions:]
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These pair styles are part of the MISC package. It is only enabled if
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LAMMPS was built with that package. See the "Making
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LAMMPS"_Section_start.html#start_3 section for more info.
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[Related commands:]
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"pair_coeff"_pair_coeff.html
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[Default:] none
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:line
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:link(Clarke)
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[(Clarke)] Clarke and Smith, J Chem Phys, 84, 2290 (1986).
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