forked from lijiext/lammps
134 lines
5.8 KiB
Plaintext
134 lines
5.8 KiB
Plaintext
"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
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:link(lws,http://lammps.sandia.gov)
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:link(ld,Manual.html)
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:link(lc,Section_commands.html#comm)
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:line
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read_restart command :h3
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[Syntax:]
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read_restart file :pre
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file = name of binary restart file to read in :ul
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[Examples:]
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read_restart save.10000
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read_restart restart.*
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read_restart poly.*.% :pre
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:pre
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[Description:]
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Read in a previously saved problem from a restart file. This allows
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continuation of a previous run.
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Restart files are saved in binary format to enable exact restarts,
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meaning that the trajectories of a restarted run will precisely match
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those produced by the original run had it continued on. Several
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things can prevent exact restarts due to round-off effects, in which
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case the trajectories in the 2 runs will slowly diverge. These
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include running on a different number of processors or changing
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certain settings such as those set by the "newton"_newton.html or
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"processors"_processors.html commands. LAMMPS will issue a WARNING in
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these cases. Certain fixes will also not restart exactly, though they
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should provide statistically similar results. These include the shake
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and langevin styles. If a restarted run is immediately different than
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the run which produced the restart file, it could be a LAMMPS bug, so
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consider "reporting it"_Section_errors.html#9_2 if you think the
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behavior is wrong.
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Because restart files are binary, they may not be portable to other
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machines. They can be converted to ASCII data files using the
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"restart2data tool"_Section_tools.html#restart in the tools
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sub-directory of the LAMMPS distribution.
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Similar to how restart files are written (see the
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"write_restart"_write_restart.html and "restart"_restart.html
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commands), the restart filename can contain two wild-card characters.
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If a "*" appears in the filename, the directory is searched for all
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filenames that match the pattern where "*" is replaced with a timestep
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value. The file with the largest timestep value is read in. Thus,
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this effectively means, read the latest restart file. It's useful if
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you want your script to continue a run from where it left off. See
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the "run"_run.html command and its "upto" option for how to specify
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the run command so it doesn't need to be changed either.
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If a "%" character appears in the restart filename, LAMMPS expects a
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set of multiple files to exist. The "restart"_restart.html and
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"write_restart"_write_restart.html commands explain how such sets are
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created. Read_restart will first read a filename where "%" is
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replaced by "base". This file tells LAMMPS how many processors
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created the set. Read_restart then reads the additional files. For
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example, if the restart file was specified as save.% when it was
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written, then read_restart reads the files save.base, save.0, save.1,
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... save.P-1, where P is the number of processors that created the
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restart file. Note that only a single processor reads all the files,
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so the input does not use parallel I/O. The number of processors
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which created the set can be different the number of processors in the
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current LAMMPS simulation.
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:line
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A restart file stores the units and atom style, simulation box
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attibutes (including whether it is an orthogonal box or a
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non-orthogonal parallelepiped with triclinic symmetry), individual
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atoms and their attributes including molecular topology, force field
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styles and coefficients, "special_bonds"_special_bonds.html settings,
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and atom group definitions. This means that commands for these
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quantities do not need to be specified in your input script that reads
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the restart file. The exceptions to this are listed below in the
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Restrictions section.
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Information about the "kspace_style"_kspace_style.html settings are
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not stored in the restart file. Hence if you wish to invoke an Ewald
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or PPPM solver, this command must be re-issued after the restart file
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is read.
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The restart file also stores values for any fixes that require state
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information to enable restarting where they left off. These include
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the {nvt} and {npt} styles that have a global state, as well as the
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{msd} and {wall/gran} styles that store information about each atom.
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"Fix"_fix.html commands are not stored in the restart file which means
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they must be specified in the input script that reads the restart
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file. To re-enable a fix whose state was stored in the restart file,
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the fix command in the new input script must use the same fix-ID and
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group-ID as the input script that wrote the restart file. LAMMPS will
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print a message indicating that the fix is being re-enabled.
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Note that no other information is stored in the restart file. This
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means that your new input script should specify settings for
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quantities like timestep size, thermodynamic and dump output, etc.
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Bond interactions (angle, etc) that have been turned off by the "fix
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shake"_fix_shake.html or "delete_bonds"_delete_bonds.html command will
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be written to a restart file as if they are turned on. This means
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they will need to be turned off again in a new run after the restart
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file is read.
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Bonds that are broken (e.g. by a bond-breaking potential) are written
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to the restart file as broken bonds with a type of 0. Thus these
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bonds will still be broken when the restart file is read.
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[Restrictions:]
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The "pair_style"_pair_style.html {eam}, {table}, and {hybrid} styles
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do not store coefficient data for individual atom type pairs in the
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restart file. Nor does the "bond_style hybrid"_bond_style.html style
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(angle, dihedral hybrid, etc). Thus for these styles you must use new
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"pair_coeff"_pair_coeff.html and "bond_coeff"_bond_coeff.html (angle,
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dihedral, etc) commands to read the appropriate tabulated files or
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reset the coefficients after the restart file is read.
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[Related commands:]
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"read_data"_read_data.html, "write_restart"_write_restart.html,
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"restart"_restart.html
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[Default:] none
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