lammps/src
Axel Kohlmeyer 31a734b03d sbmask function should be flagged as const indicating no side effects 2017-06-07 17:10:33 -04:00
..
ASPHERE Merge pull request #489 from akohlmey/thread-safe-biasing 2017-05-18 09:15:07 -06:00
BODY correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
CLASS2 correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
COLLOID correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
COMPRESS propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
CORESHELL Merge pull request #268 from arielzn/born_dsf 2016-11-09 11:57:09 -07:00
DEPEND Fix more typos in src files 2017-03-07 00:55:01 -05:00
DIPOLE correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
GPU change references from cg_cmm to lj_sdk and from cmm to sdk 2017-04-26 19:44:25 -04:00
GRANULAR avoid undesired negative forces for high particle velocities in granular models 2017-05-30 21:54:16 -04:00
KIM propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
KOKKOS major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
KSPACE triclinic member variable is referenced in destructor and thus must be initialized in constructor 2017-05-30 07:41:01 -04:00
MAKE new neigh_modify exclude option, other SNAP changes 2017-03-07 09:31:12 -07:00
MANYBODY fix bug in computing mixed EAM potentials introduced by TI modifications 2017-05-26 20:28:45 -04:00
MC fix bug reported on lammps-users, when not using the first molecule template 2017-05-30 23:58:56 -04:00
MEAM propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
MISC correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
MOLECULE Merge pull request #485 from akohlmey/pair_settings_cut_bugfix 2017-05-18 09:12:47 -06:00
MPIIO propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
MSCG propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
OPT remove dead code and reduce trivial compiler warnings (clang++) 2017-03-27 14:28:50 -04:00
PERI Initializing pointers in PERI, QEQ and REPLICA 2016-11-07 19:58:27 +01:00
POEMS propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
PYTHON Fixes coverity issue CID 179426 2017-05-22 17:36:16 -04:00
QEQ bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
REAX add support for gzip compressed output to fix reax/bonds, reax/c/bonds and reax/c/species 2017-05-10 11:19:18 -04:00
REPLICA fix gcmc updates from Aidan, trimming of output for replica commands 2017-04-11 08:35:09 -06:00
RIGID new Section package and start doc pages and build scripts 2017-05-04 11:22:20 -06:00
SHOCK Spelling fixes in source files 2017-03-05 18:30:39 -05:00
SNAP SNAP changes by Aidan 2017-05-30 10:21:07 -06:00
SRD Fix typos in src files 2017-03-05 21:03:40 -05:00
STUBS add support for MPI_Request_free() to MPI STUBS library 2017-03-17 11:40:09 -04:00
USER-ATC propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
USER-AWPMD correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
USER-CGDNA Updated README 2017-03-29 11:18:04 +01:00
USER-CGSDK correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
USER-COLVARS propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
USER-DIFFRACTION Fix typos in src files 2017-03-05 21:03:40 -05:00
USER-DPD Merge pull request #485 from akohlmey/pair_settings_cut_bugfix 2017-05-18 09:12:47 -06:00
USER-DRUDE correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
USER-EFF correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
USER-FEP correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
USER-H5MD propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
USER-INTEL major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
USER-LB Fix more typos in src files 2017-03-07 00:55:01 -05:00
USER-MANIFOLD update e-mail and affiliation for stefan paquay in USER-MANIFOLD related files 2017-06-06 16:26:57 -04:00
USER-MGPT new SNAP potential for W 2017-02-21 15:49:21 -07:00
USER-MISC some more bookkeeping updates triggered by the lj/sf style removal 2017-06-06 17:31:45 -04:00
USER-MOLFILE update VMD molfile plugin headers and move them to lib/molfile (where they belong) 2017-04-18 11:42:31 -04:00
USER-NETCDF new Section package and start doc pages and build scripts 2017-05-04 11:22:20 -06:00
USER-OMP alias pair style lj/sf to lj/smooth/linear and remove/update related files 2017-06-06 17:26:06 -04:00
USER-PHONON tweaked author syntax 2016-11-22 08:15:13 -07:00
USER-QMMM propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
USER-QTB Fix typos in src files 2017-03-05 21:03:40 -05:00
USER-QUIP propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
USER-REAXC avoid hang in fix reax/c/species when multiple atoms have the exact same x-coordinate 2017-05-30 08:15:55 -04:00
USER-SMD propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
USER-SMTBQ remove dead code and reduce trivial compiler warnings (clang++) 2017-03-27 14:28:50 -04:00
USER-SPH add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
USER-TALLY turn errors from manybody potentials for */tally computes into warnings 2017-04-22 21:50:27 -04:00
USER-VTK Fix segmentation fault in dump vtk 2017-05-10 19:51:14 -04:00
VORONOI propagate global package installation bugfix to explicit package scripts 2017-04-07 15:29:56 -04:00
.gitignore some more bookkeeping updates triggered by the lj/sf style removal 2017-06-06 17:31:45 -04:00
Depend.sh rename USER-CG-CMM folder to USER-CGSDK 2017-04-26 19:29:39 -04:00
Install.sh address issue where uninstalling an empty package will erase all code in src 2017-04-06 11:08:57 -04:00
Make.py change purge target in Makefile, also fixed one issue with Make.py 2016-09-30 09:17:55 -06:00
Make.sh restore locale and enforce grep option squashing 2016-09-09 15:42:14 -04:00
Makefile neighbor list bugfix to prevent cycle in copy lists 2017-05-09 08:55:18 -06:00
Makefile.list remove pair_zhou from Makefile.list 2017-03-18 20:48:49 -04:00
Makefile.package.empty git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13579 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-07-14 17:39:05 +00:00
Makefile.package.settings.empty
Package.sh enforce C or POSIX locale in all shell scripts and turn of enforced global grep options 2016-08-27 01:57:45 -04:00
Purge.list alias pair style lj/sf to lj/smooth/linear and remove/update related files 2017-06-06 17:26:06 -04:00
accelerator_kokkos.h sync with SVN 2016-11-08 08:57:51 -07:00
accelerator_omp.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11285 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-21 22:09:05 +00:00
angle.cpp Adding alloc flag to ev_setup 2017-03-08 12:36:23 -07:00
angle.h Adding alloc flag to ev_setup 2017-03-08 12:36:23 -07:00
angle_hybrid.cpp sync GHub with SVN 2017-01-26 14:06:43 -07:00
angle_hybrid.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
angle_zero.cpp add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
angle_zero.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14868 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-22 17:54:49 +00:00
atom.cpp changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
atom.h Fix typos in src files 2017-03-05 21:03:40 -05:00
atom_map.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
atom_masks.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
atom_vec.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15080 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-05-31 16:20:32 +00:00
atom_vec.h changes to imbalance weight factors 2016-10-05 10:33:39 -06:00
atom_vec_atomic.cpp fix spring doc page update 2017-01-17 09:02:56 -07:00
atom_vec_atomic.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
atom_vec_body.cpp fix spring doc page update 2017-01-17 09:02:56 -07:00
atom_vec_body.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 15:26:57 +00:00
atom_vec_charge.cpp fix spring doc page update 2017-01-17 09:02:56 -07:00
atom_vec_charge.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
atom_vec_ellipsoid.cpp fix spring doc page update 2017-01-17 09:02:56 -07:00
atom_vec_ellipsoid.h remove executable permissions on non-executables and non-scripts 2016-09-08 14:45:07 -04:00
atom_vec_hybrid.cpp Fix more typos in src files 2017-03-07 00:55:01 -05:00
atom_vec_hybrid.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
atom_vec_line.cpp fix spring doc page update 2017-01-17 09:02:56 -07:00
atom_vec_line.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14480 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-01-23 00:49:16 +00:00
atom_vec_sphere.cpp fix spring doc page update 2017-01-17 09:02:56 -07:00
atom_vec_sphere.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
atom_vec_tri.cpp fix spring doc page update 2017-01-17 09:02:56 -07:00
atom_vec_tri.h Fix typos in src files 2017-03-05 21:03:40 -05:00
balance.cpp fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof 2017-03-23 15:31:27 -06:00
balance.h change to RCB cuts in load-balancing commands, also a new option for fix halt 2017-03-10 15:55:07 -07:00
body.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
body.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14421 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-01-11 22:00:29 +00:00
bond.cpp Made fix adapt work with bond_harmonic. 2017-04-04 12:35:26 -04:00
bond.h Made fix adapt work with bond_harmonic. 2017-04-04 12:35:26 -04:00
bond_hybrid.cpp sync GHub with SVN 2017-01-26 14:06:43 -07:00
bond_hybrid.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
bond_zero.cpp add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
bond_zero.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14868 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-22 17:54:49 +00:00
change_box.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
change_box.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
citeme.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
citeme.h Spelling fixes in source files 2017-03-05 18:30:39 -05:00
comm.cpp fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof 2017-03-23 15:31:27 -06:00
comm.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15187 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 17:39:55 +00:00
comm_brick.cpp fix spring doc page update 2017-01-17 09:02:56 -07:00
comm_brick.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15187 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 17:39:55 +00:00
comm_tiled.cpp remove dead code and reduce trivial compiler warnings (clang++) 2017-03-27 14:28:50 -04:00
comm_tiled.h changes to imbalance weight factors 2016-10-05 10:33:39 -06:00
compute.cpp fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof 2017-03-23 15:31:27 -06:00
compute.h sbmask function should be flagged as const indicating no side effects 2017-06-07 17:10:33 -04:00
compute_angle.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:02 -04:00
compute_angle.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_angle_local.cpp added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_angle_local.h added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_angmom_chunk.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:02 -04:00
compute_angmom_chunk.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13286 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-25 15:50:57 +00:00
compute_bond.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:02 -04:00
compute_bond.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_bond_local.cpp added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_bond_local.h added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_centro_atom.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:02 -04:00
compute_centro_atom.h Added axes keyword 2016-07-27 23:06:18 +00:00
compute_chunk_atom.cpp Merge pull request #393 from akohlmey/small-bugfixes 2017-03-07 09:56:03 -07:00
compute_chunk_atom.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_cluster_atom.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:02 -04:00
compute_cluster_atom.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
compute_cna_atom.cpp fix off-by one bug when looking for bonds. 2016-08-28 14:20:43 -04:00
compute_cna_atom.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_com.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15100 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-02 14:08:20 +00:00
compute_com.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
compute_com_chunk.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:02 -04:00
compute_com_chunk.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15170 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-14 22:14:34 +00:00
compute_contact_atom.cpp new SNAP potential for W 2017-02-21 15:49:21 -07:00
compute_contact_atom.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_coord_atom.cpp remove unused variable 2017-01-25 15:40:52 -07:00
compute_coord_atom.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_dihedral.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_dihedral.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_dihedral_local.cpp added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_dihedral_local.h added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_dipole_chunk.cpp new Section package and start doc pages and build scripts 2017-05-04 11:22:20 -06:00
compute_dipole_chunk.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14860 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-22 15:55:54 +00:00
compute_displace_atom.cpp individual computes do not need to set vector/array to NULL. reordering fixes to silence compiler warnings 2016-08-30 06:41:02 -04:00
compute_displace_atom.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12996 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-01-28 15:55:56 +00:00
compute_erotate_sphere.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
compute_erotate_sphere.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
compute_erotate_sphere_atom.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_erotate_sphere_atom.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
compute_global_atom.cpp new compute global/atom command, also bug fix for descending dump sorts 2016-11-30 14:01:27 -07:00
compute_global_atom.h new compute global/atom command, also bug fix for descending dump sorts 2016-11-30 14:01:27 -07:00
compute_group_group.cpp patch 12Feb17 - change int to tagint for compute group/group 2017-02-13 08:40:54 -07:00
compute_group_group.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_gyration.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-06 23:21:39 +00:00
compute_gyration.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
compute_gyration_chunk.cpp added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_gyration_chunk.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13278 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-23 23:30:50 +00:00
compute_heat_flux.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_heat_flux.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
compute_hexorder_atom.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_hexorder_atom.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_improper.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_improper.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_improper_local.cpp added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_improper_local.h added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_inertia_chunk.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_inertia_chunk.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13278 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-23 23:30:50 +00:00
compute_ke.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
compute_ke.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
compute_ke_atom.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_ke_atom.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
compute_msd.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_msd.h Added average keyword 2015-12-02 05:06:52 +00:00
compute_msd_chunk.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_msd_chunk.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 15:26:57 +00:00
compute_omega_chunk.cpp sync with 7Sep16 patch 2016-09-06 17:00:32 -06:00
compute_omega_chunk.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13286 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-25 15:50:57 +00:00
compute_orientorder_atom.cpp simplified neighbor list copying to avoid possible same-timestep re-build issues 2017-01-19 17:01:15 -07:00
compute_orientorder_atom.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_pair.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_pair.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_pair_local.cpp added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_pair_local.h added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_pe.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15291 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-12 22:59:27 +00:00
compute_pe.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15291 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-12 22:59:27 +00:00
compute_pe_atom.cpp remove executable permissions on non-executables and non-scripts 2016-09-08 14:45:07 -04:00
compute_pe_atom.h remove executable permissions on non-executables and non-scripts 2016-09-08 14:45:07 -04:00
compute_pressure.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_pressure.h initial import of adapted gREM code by David Stelter and Edyta Malolepsza 2016-11-13 18:44:10 -05:00
compute_property_atom.cpp added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_property_atom.h remove vector/array class members shadowing the base class 2016-08-30 07:04:54 -04:00
compute_property_chunk.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:03 -04:00
compute_property_chunk.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_property_local.cpp remove dead code and reduce trivial compiler warnings (clang++) 2017-03-27 14:28:50 -04:00
compute_property_local.h Fix typos in src files 2017-03-05 21:03:40 -05:00
compute_rdf.cpp new SNAP potential for W 2017-02-21 15:49:21 -07:00
compute_rdf.h new SNAP potential for W 2017-02-21 15:49:21 -07:00
compute_reduce.cpp Kokkos updates by Stan 2016-11-17 08:58:22 -07:00
compute_reduce.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13278 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-23 23:30:50 +00:00
compute_reduce_region.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15083 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-05-31 16:33:07 +00:00
compute_reduce_region.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
compute_slice.cpp added functionity to lib interface 2016-12-13 16:22:17 -07:00
compute_slice.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
compute_stress_atom.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:04 -04:00
compute_stress_atom.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13278 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-23 23:30:50 +00:00
compute_temp.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
compute_temp.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 15:26:57 +00:00
compute_temp_chunk.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:04 -04:00
compute_temp_chunk.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 15:26:57 +00:00
compute_temp_com.cpp port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_com.h port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_deform.cpp port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_deform.h port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_partial.cpp port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_partial.h port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_profile.cpp port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_profile.h port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_ramp.cpp port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_ramp.h port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_region.cpp port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_region.h port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_sphere.cpp port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_temp_sphere.h port thread-safe temperature biasing from LAMMPS-ICMS 2017-05-16 18:15:13 -04:00
compute_torque_chunk.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:04 -04:00
compute_torque_chunk.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13278 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-23 23:30:50 +00:00
compute_vacf.cpp remove executable permissions on non-executables and non-scripts 2016-09-08 14:45:07 -04:00
compute_vacf.h remove executable permissions on non-executables and non-scripts 2016-09-08 14:45:07 -04:00
compute_vcm_chunk.cpp Fixed initialization of arrays in computes 2016-08-24 17:26:04 -04:00
compute_vcm_chunk.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13278 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-23 23:30:50 +00:00
create_atoms.cpp Fix more typos in src files 2017-03-07 00:55:01 -05:00
create_atoms.h Fix typos in src files 2017-03-05 21:03:40 -05:00
create_bonds.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15348 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-22 21:19:08 +00:00
create_bonds.h sbmask function should be flagged as const indicating no side effects 2017-06-07 17:10:33 -04:00
create_box.cpp make certain, that atom->maxspecial is incremented with extra special space 2016-10-21 11:55:36 -04:00
create_box.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
delete_atoms.cpp new library functions 2016-10-27 09:34:04 -06:00
delete_atoms.h sbmask function should be flagged as const indicating no side effects 2017-06-07 17:10:33 -04:00
delete_bonds.cpp add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
delete_bonds.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
dihedral.cpp Adding alloc flag to ev_setup 2017-03-08 12:36:23 -07:00
dihedral.h Adding alloc flag to ev_setup 2017-03-08 12:36:23 -07:00
dihedral_hybrid.cpp sync GHub with SVN 2017-01-26 14:06:43 -07:00
dihedral_hybrid.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
dihedral_zero.cpp add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
dihedral_zero.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14868 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-22 17:54:49 +00:00
displace_atoms.cpp displace_atom rotate needs to operate on unwrapped coordinates with image flags set to zero 2017-05-29 16:57:35 -04:00
displace_atoms.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 15:26:57 +00:00
domain.cpp make certain Domain::box_change is initialized before use 2017-06-06 08:08:10 -04:00
domain.h new Section package and start doc pages and build scripts 2017-05-04 11:22:20 -06:00
dump.cpp bug fix for dump sort in descending order 2016-11-23 17:08:36 -07:00
dump.h fix bug in recent dump changes for -DLAMMPS_BIGBIG 2016-08-22 14:36:47 -04:00
dump_atom.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15428 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-03 16:29:35 +00:00
dump_atom.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
dump_cfg.cpp NULLing ptrs in comm_brick and dump*.cpp 2016-11-07 15:50:18 +01:00
dump_cfg.h remove executable permissions on non-executables and non-scripts 2016-09-08 14:45:07 -04:00
dump_custom.cpp Merge pull request #476 from akohlmey/dump_custom_bugfix 2017-05-11 09:27:08 -06:00
dump_custom.h Fix typos in src files 2017-03-05 21:03:40 -05:00
dump_dcd.cpp NULLing ptrs in comm_brick and dump*.cpp 2016-11-07 15:50:18 +01:00
dump_dcd.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14602 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 16:10:43 +00:00
dump_image.cpp NULL ptrs in dump_custom and dump_image 2016-11-07 15:56:47 +01:00
dump_image.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15309 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-14 19:42:39 +00:00
dump_local.cpp NULLing ptrs in comm_brick and dump*.cpp 2016-11-07 15:50:18 +01:00
dump_local.h Fix typos in src files 2017-03-05 21:03:40 -05:00
dump_movie.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
dump_movie.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11380 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-29 18:59:46 +00:00
dump_xyz.cpp NULLing ptrs in comm_brick and dump*.cpp 2016-11-07 15:50:18 +01:00
dump_xyz.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
error.cpp print the last input line, when error->all() is called 2017-01-09 17:03:06 -05:00
error.h Make exceptions control flow and functions optional 2016-09-16 18:57:37 -04:00
exceptions.h Make exceptions control flow and functions optional 2016-09-16 18:57:37 -04:00
finish.cpp fix gcmc updates from Aidan, trimming of output for replica commands 2017-04-11 08:35:09 -06:00
finish.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix.cpp fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof 2017-03-23 15:31:27 -06:00
fix.h fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof 2017-03-23 15:31:27 -06:00
fix_adapt.cpp patch 11Apr17 2017-04-11 09:00:37 -06:00
fix_adapt.h Made fix adapt work with bond_harmonic. 2017-04-04 12:35:26 -04:00
fix_addforce.cpp correct bug and synchronize fix addforce respa level init with other fixes 2016-09-27 17:36:02 -04:00
fix_addforce.h Fix typos in src files 2017-03-05 21:03:40 -05:00
fix_ave_atom.cpp fix argument indexing bug in fix ave/atom 2016-09-19 23:24:37 -04:00
fix_ave_atom.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
fix_ave_chunk.cpp changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
fix_ave_chunk.h changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
fix_ave_correlate.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_ave_correlate.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 15:26:57 +00:00
fix_ave_histo.cpp protect fix ave/histo from segfaulting on non-existing computes, fixes or variables 2017-04-03 18:08:15 -04:00
fix_ave_histo.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15463 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-09 14:10:55 +00:00
fix_ave_histo_weight.cpp Fix typos in src files 2017-03-05 21:03:40 -05:00
fix_ave_histo_weight.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 15:26:57 +00:00
fix_ave_time.cpp new compute global/atom command, also bug fix for descending dump sorts 2016-11-30 14:01:27 -07:00
fix_ave_time.h Fix typos in src files 2017-03-05 21:03:40 -05:00
fix_aveforce.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_aveforce.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_balance.cpp Fix typos in src files 2017-03-05 21:03:40 -05:00
fix_balance.h adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh 2016-10-05 15:46:20 -06:00
fix_box_relax.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_box_relax.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_controller.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_controller.h remove executable permissions on non-executables and non-scripts 2016-09-08 14:45:07 -04:00
fix_deform.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_deform.h Fix typos in src files 2017-03-05 21:03:40 -05:00
fix_deprecated.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-06 23:21:39 +00:00
fix_deprecated.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15104 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-02 14:14:17 +00:00
fix_drag.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_drag.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_dt_reset.cpp enable dynamic groups for fix dt/reset 2016-09-30 09:09:44 -04:00
fix_dt_reset.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_enforce2d.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_enforce2d.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15189 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 20:54:47 +00:00
fix_external.cpp changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
fix_external.h changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
fix_gravity.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_gravity.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_group.cpp support dynamic groups with run style respa 2016-09-29 15:13:46 -04:00
fix_group.h Fix more typos in src files 2017-03-07 00:55:01 -05:00
fix_halt.cpp patch 31Mar17 for stable release 2017-03-30 10:07:27 -06:00
fix_halt.h change to RCB cuts in load-balancing commands, also a new option for fix halt 2017-03-10 15:55:07 -07:00
fix_heat.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_heat.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_indent.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_indent.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_langevin.cpp added functionity to lib interface 2016-12-13 16:22:17 -07:00
fix_langevin.h Spelling fixes in source files 2017-03-05 18:30:39 -05:00
fix_lineforce.cpp enable support for dynamic groups in fix planeforce and fix lineforce 2017-06-02 08:45:15 -04:00
fix_lineforce.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_minimize.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_minimize.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_momentum.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15089 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-05-31 16:50:28 +00:00
fix_momentum.h fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof 2017-03-23 15:31:27 -06:00
fix_move.cpp doc page sync with SVN 2016-09-21 20:54:20 -06:00
fix_move.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 15:26:57 +00:00
fix_nh.cpp Changed the check on initial and final temperature to <= 0 for both. 2017-03-28 11:22:10 -04:00
fix_nh.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15369 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-27 14:04:56 +00:00
fix_nh_sphere.cpp changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
fix_nh_sphere.h changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
fix_nph.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-06 23:21:39 +00:00
fix_nph.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_nph_sphere.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-06 23:21:39 +00:00
fix_nph_sphere.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_npt.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-06 23:21:39 +00:00
fix_npt.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_npt_sphere.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-06 23:21:39 +00:00
fix_npt_sphere.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_nve.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
fix_nve.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_nve_limit.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
fix_nve_limit.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 15:26:57 +00:00
fix_nve_noforce.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
fix_nve_noforce.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_nve_sphere.cpp changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
fix_nve_sphere.h changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
fix_nvt.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-06 23:21:39 +00:00
fix_nvt.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_nvt_sllod.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-06 23:21:39 +00:00
fix_nvt_sllod.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_nvt_sphere.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-06 23:21:39 +00:00
fix_nvt_sphere.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_planeforce.cpp enable support for dynamic groups in fix planeforce and fix lineforce 2017-06-02 08:45:15 -04:00
fix_planeforce.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_press_berendsen.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_press_berendsen.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_print.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_print.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
fix_property_atom.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_property_atom.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14912 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-30 18:07:40 +00:00
fix_read_restart.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_read_restart.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_recenter.cpp bug fix for fix GCMC w/ fix shake, enhance of fix wall/gran/region with restarting 2016-10-13 16:55:53 -06:00
fix_recenter.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12814 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-12-02 02:15:39 +00:00
fix_respa.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_respa.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13757 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-07-28 16:04:10 +00:00
fix_restrain.cpp pair TIP4P bug fix for cutoffs >> box size 2017-01-06 09:57:27 -07:00
fix_restrain.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_setforce.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_setforce.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_shear_history.cpp fix bug in fix shear/history reported by kevin hanley. see #500 2017-05-25 10:11:24 -04:00
fix_shear_history.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15333 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-16 20:00:36 +00:00
fix_spring.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_spring.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_spring_chunk.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_spring_chunk.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_spring_rg.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_spring_rg.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_spring_self.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_spring_self.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_store.cpp added LAST option to dump_modify thresh, more restart info printed out to screen 2016-10-11 12:39:52 -06:00
fix_store.h sync with SVN 2016-09-23 14:52:45 -06:00
fix_store_force.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_store_force.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_store_state.cpp patch 17Mar17 2017-03-17 11:29:23 -06:00
fix_store_state.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14423 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-01-11 23:38:16 +00:00
fix_temp_berendsen.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_temp_berendsen.h
fix_temp_csld.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_temp_csld.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13320 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-27 20:39:27 +00:00
fix_temp_csvr.cpp make certain, that -log() doesn't overflow and assign a suitable maximum number instead. 2016-09-15 14:55:32 -04:00
fix_temp_csvr.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14582 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-08 16:18:20 +00:00
fix_temp_rescale.cpp patch to add DPD-VV 2016-10-12 07:35:47 -06:00
fix_temp_rescale.h
fix_tmd.cpp correct logic bug in bufix for fix tmd 2016-10-01 06:26:52 -04:00
fix_tmd.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
fix_vector.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_vector.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13278 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-23 23:30:50 +00:00
fix_viscous.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_viscous.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_wall.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_wall.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
fix_wall_harmonic.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
fix_wall_harmonic.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11393 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-30 18:30:18 +00:00
fix_wall_lj93.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
fix_wall_lj93.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_wall_lj126.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
fix_wall_lj126.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_wall_lj1043.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
fix_wall_lj1043.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
fix_wall_reflect.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_wall_reflect.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
fix_wall_region.cpp Fixed initialization of arrays in fixes 2016-08-28 22:23:22 -04:00
fix_wall_region.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
force.cpp NULLing pointers after delete 2017-01-04 16:04:05 +01:00
force.h add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
group.cpp Kokkos lib update 2016-09-08 13:56:18 -06:00
group.h undo obsoleted changes to group command by iain bethune 2016-08-22 15:23:16 -04:00
image.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
image.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
imbalance.cpp new verion of balance weighting 2016-09-23 14:37:53 -06:00
imbalance.h adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh 2016-10-05 15:46:20 -06:00
imbalance_group.cpp changes to imbalance weight factors 2016-10-05 10:33:39 -06:00
imbalance_group.h new verion of balance weighting 2016-09-23 14:37:53 -06:00
imbalance_neigh.cpp new SNAP potential for W 2017-02-21 15:49:21 -07:00
imbalance_neigh.h new verion of balance weighting 2016-09-23 14:37:53 -06:00
imbalance_store.cpp new verion of balance weighting 2016-09-23 14:37:53 -06:00
imbalance_store.h new verion of balance weighting 2016-09-23 14:37:53 -06:00
imbalance_time.cpp adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh 2016-10-05 15:46:20 -06:00
imbalance_time.h adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh 2016-10-05 15:46:20 -06:00
imbalance_var.cpp adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh 2016-10-05 15:46:20 -06:00
imbalance_var.h adjustments to balancing weights and factors, also XOR op for formulas, if, dump_modify thresh 2016-10-05 15:46:20 -06:00
improper.cpp Adding alloc flag to ev_setup 2017-03-08 12:36:23 -07:00
improper.h Adding alloc flag to ev_setup 2017-03-08 12:36:23 -07:00
improper_hybrid.cpp sync GHub with SVN 2017-01-26 14:06:43 -07:00
improper_hybrid.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
improper_zero.cpp add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
improper_zero.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14868 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-22 17:54:49 +00:00
info.cpp improve memory usage reporting in info and output class 2017-03-16 18:35:04 -04:00
info.h provide an accessor for names of LAMMPS variables 2016-10-17 19:56:18 -04:00
input.cpp fix suffix style handling bug for adding fixes and computes 2017-05-25 02:01:04 -04:00
input.h print the last input line, when error->all() is called 2017-01-09 17:03:06 -05:00
integrate.cpp added functionity to lib interface 2016-12-13 16:22:17 -07:00
integrate.h fix gcmc updates from Aidan, trimming of output for replica commands 2017-04-11 08:35:09 -06:00
irregular.cpp Revert "In irregular.cpp use simpler and slightly faster MPI_Reduce_scatter_block()" 2017-03-17 11:35:59 -04:00
irregular.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
kspace.cpp Adding alloc flag to ev_setup 2017-03-08 12:36:23 -07:00
kspace.h Adding alloc flag to ev_setup 2017-03-08 12:36:23 -07:00
lammps.cpp Refactor PYTHON package and wrapper classes 2017-04-11 21:22:30 -04:00
lammps.h Refactor PYTHON package and wrapper classes 2017-04-11 21:22:30 -04:00
lattice.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15157 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-08 15:41:04 +00:00
lattice.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12231 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-07-30 14:59:20 +00:00
library.cpp no need for special whitespace handling in library interface 2017-05-30 07:55:48 -04:00
library.h added functionity to lib interface 2016-12-13 16:22:17 -07:00
lmptype.h Fix more typos in src files 2017-03-07 00:55:01 -05:00
lmpwindows.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
main.cpp Implemented optional C++ exceptions in Error class 2016-08-24 15:31:30 -04:00
math_complex.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12231 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-07-30 14:59:20 +00:00
math_const.h comm tiled bug fix 2016-09-16 10:31:52 -06:00
math_extra.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15369 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-27 14:04:56 +00:00
math_extra.h fix spring doc page update 2017-01-17 09:02:56 -07:00
math_special.cpp Stan bug fixes for fix reaxc/bonds/kk 2016-11-09 15:47:50 -07:00
math_special.h fix double-return warning 2017-01-25 15:22:42 -07:00
math_vector.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
memory.cpp restore change to make -DLAMMPS_MEMALIGN=64 default when USER-INTEL package is installed (which requires it) 2016-12-14 15:24:55 -05:00
memory.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
min.cpp print warning about minimization energy with fix box/relax 2017-05-03 15:33:22 -04:00
min.h print warning about minimization energy with fix box/relax 2017-05-03 15:33:22 -04:00
min_cg.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
min_cg.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12231 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-07-30 14:59:20 +00:00
min_fire.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
min_fire.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12231 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-07-30 14:59:20 +00:00
min_hftn.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15468 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-10 14:59:04 +00:00
min_hftn.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15393 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-29 14:28:58 +00:00
min_linesearch.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
min_linesearch.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12231 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-07-30 14:59:20 +00:00
min_quickmin.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
min_quickmin.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12231 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-07-30 14:59:20 +00:00
min_sd.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
min_sd.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12231 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-07-30 14:59:20 +00:00
minimize.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
minimize.h Adding error checks for Kokkos-incompatible features 2016-01-28 23:32:16 +00:00
modify.cpp fix suffix style handling bug for adding fixes and computes 2017-05-25 02:01:04 -04:00
modify.h fix suffix style handling bug for adding fixes and computes 2017-05-25 02:01:04 -04:00
molecule.cpp Fix more typos in src files 2017-03-07 00:55:01 -05:00
molecule.h Fix more typos in src files 2017-03-07 00:55:01 -05:00
mpiio.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14655 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-17 15:56:48 +00:00
my_page.h fixed bug with pair hybrid/overaly and manybody potentials finding the right skip neighbor method 2016-12-21 09:50:29 -07:00
my_pool_chunk.h extra python_wrapper change needed for last patch 2016-12-16 11:35:42 -07:00
nbin.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
nbin.h bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
nbin_standard.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
nbin_standard.h new neighbor list changes 2016-09-07 13:42:58 -06:00
neigh_list.cpp remove a debug print line 2017-02-21 15:57:03 -07:00
neigh_list.h new SNAP potential for W 2017-02-21 15:49:21 -07:00
neigh_request.cpp Remove unused code detected by coverity CID 177700 2017-05-22 17:51:40 -04:00
neigh_request.h new SNAP potential for W 2017-02-21 15:49:21 -07:00
neighbor.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
neighbor.h new neigh_modify exclude option, other SNAP changes 2017-03-07 09:31:12 -07:00
npair.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_copy.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_copy.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_full_bin.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_full_bin.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_full_bin_atomonly.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_full_bin_atomonly.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_full_bin_ghost.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_full_bin_ghost.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_full_multi.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_full_multi.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_full_nsq.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_full_nsq.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_full_nsq_ghost.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_full_nsq_ghost.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_half_bin_atomonly_newton.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_half_bin_atomonly_newton.h new SNAP potential for W 2017-02-21 15:49:21 -07:00
npair_half_bin_newtoff.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_half_bin_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_bin_newtoff_ghost.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_half_bin_newtoff_ghost.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_bin_newton.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_half_bin_newton.h new SNAP potential for W 2017-02-21 15:49:21 -07:00
npair_half_bin_newton_tri.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_half_bin_newton_tri.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_multi_newtoff.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_half_multi_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_multi_newton.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_half_multi_newton.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_multi_newton_tri.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_half_multi_newton_tri.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_nsq_newtoff.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_nsq_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_nsq_newtoff_ghost.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_nsq_newtoff_ghost.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_nsq_newton.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_nsq_newton.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_respa_bin_newtoff.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_half_respa_bin_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_respa_bin_newton.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_half_respa_bin_newton.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_respa_bin_newton_tri.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_half_respa_bin_newton_tri.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_respa_nsq_newtoff.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_respa_nsq_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_respa_nsq_newton.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_respa_nsq_newton.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_size_bin_newtoff.cpp bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue 2017-05-16 15:51:41 -06:00
npair_half_size_bin_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_size_bin_newton.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_half_size_bin_newton.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_size_bin_newton_tri.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_half_size_bin_newton_tri.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_size_nsq_newtoff.cpp new SNAP potential for W 2017-02-21 15:49:21 -07:00
npair_half_size_nsq_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_half_size_nsq_newton.cpp new SNAP potential for W 2017-02-21 15:49:21 -07:00
npair_half_size_nsq_newton.h new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_halffull_newtoff.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_halffull_newtoff.h new SNAP potential for W 2017-02-21 15:49:21 -07:00
npair_halffull_newton.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_halffull_newton.h new SNAP potential for W 2017-02-21 15:49:21 -07:00
npair_skip.cpp new SNAP potential for W 2017-02-21 15:49:21 -07:00
npair_skip.h new SNAP potential for W 2017-02-21 15:49:21 -07:00
npair_skip_respa.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
npair_skip_respa.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_skip_size.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_skip_size.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_skip_size_off2on.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_skip_size_off2on.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_skip_size_off2on_oneside.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
npair_skip_size_off2on_oneside.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil.cpp new SNAP potential for W 2017-02-21 15:49:21 -07:00
nstencil.h new SNAP potential for W 2017-02-21 15:49:21 -07:00
nstencil_full_bin_2d.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil_full_bin_2d.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil_full_bin_3d.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_full_bin_3d.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil_full_ghost_bin_2d.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_full_ghost_bin_2d.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil_full_ghost_bin_3d.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_full_ghost_bin_3d.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil_full_multi_2d.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_full_multi_2d.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil_full_multi_3d.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_full_multi_3d.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_bin_2d_newtoff.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil_half_bin_2d_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_bin_2d_newton.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_bin_2d_newton.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_bin_2d_newton_tri.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil_half_bin_2d_newton_tri.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_bin_3d_newtoff.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil_half_bin_3d_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_bin_3d_newton.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_bin_3d_newton.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_bin_3d_newton_tri.cpp major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil_half_bin_3d_newton_tri.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_ghost_bin_2d_newtoff.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_ghost_bin_2d_newtoff.h major neighbor list style whitespace cleanup 2017-05-30 17:04:48 -04:00
nstencil_half_ghost_bin_3d_newtoff.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_ghost_bin_3d_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_2d_newtoff.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_2d_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_2d_newton.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_2d_newton.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_2d_newton_tri.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_2d_newton_tri.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_3d_newtoff.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_3d_newtoff.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_3d_newton.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_3d_newton.h new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_3d_newton_tri.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
nstencil_half_multi_3d_newton_tri.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_angle_all.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_angle_all.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_angle_partial.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_angle_partial.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_angle_template.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_angle_template.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_bond_all.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_bond_all.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_bond_partial.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_bond_partial.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_bond_template.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_bond_template.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_dihedral_all.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_dihedral_all.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_dihedral_partial.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_dihedral_partial.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_dihedral_template.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_dihedral_template.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_improper_all.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_improper_all.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_improper_partial.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_improper_partial.h new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_improper_template.cpp new neighbor list changes 2016-09-07 13:42:58 -06:00
ntopo_improper_template.h new neighbor list changes 2016-09-07 13:42:58 -06:00
output.cpp fix suffix style handling bug for adding fixes and computes 2017-05-25 02:01:04 -04:00
output.h fix gcmc updates from Aidan, trimming of output for replica commands 2017-04-11 08:35:09 -06:00
pack.h
pair.cpp Adding alloc flag to ev_setup 2017-03-08 12:36:23 -07:00
pair.h sbmask function should be flagged as const indicating no side effects 2017-06-07 17:10:33 -04:00
pair_beck.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_beck.h
pair_born.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_born.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_born_coul_dsf.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_born_coul_dsf.h pair style born/coul/dsf added with its coreshell version 2016-11-08 11:32:38 +01:00
pair_born_coul_wolf.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_born_coul_wolf.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11044 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-11-22 17:14:39 +00:00
pair_buck.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_buck.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13058 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-02-04 22:14:27 +00:00
pair_buck_coul_cut.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_buck_coul_cut.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13303 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-27 13:41:29 +00:00
pair_coul_cut.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_coul_cut.h Fixing a few bugs in Kokkos 2015-02-23 23:45:29 +00:00
pair_coul_debye.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_coul_debye.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_coul_dsf.cpp add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
pair_coul_dsf.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
pair_coul_streitz.cpp new SNAP potential for W 2017-02-21 15:49:21 -07:00
pair_coul_streitz.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14494 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-01-25 23:04:56 +00:00
pair_coul_wolf.cpp add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
pair_coul_wolf.h
pair_dpd.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_dpd.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_dpd_tstat.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_dpd_tstat.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_gauss.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_gauss.h add mixing for pair styles gauss and gauss/cut contributed by andrew jewett. also add support for write_data. 2016-10-18 22:26:47 -04:00
pair_hybrid.cpp add support to pair_modify to selectively disable compute/tally callbacks in sub-styles for pair hybrid and hybrid/overlay 2017-04-21 14:01:38 -04:00
pair_hybrid.h add support to pair_modify to selectively disable compute/tally callbacks in sub-styles for pair hybrid and hybrid/overlay 2017-04-21 14:01:38 -04:00
pair_hybrid_overlay.cpp new SNAP potential for W 2017-02-21 15:49:21 -07:00
pair_hybrid_overlay.h new SNAP potential for W 2017-02-21 15:49:21 -07:00
pair_lj96_cut.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_lj96_cut.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_lj_cubic.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_lj_cubic.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_lj_cut.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_lj_cut.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_lj_cut_coul_cut.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_lj_cut_coul_cut.h Fixing a few bugs in Kokkos 2015-02-23 23:45:29 +00:00
pair_lj_cut_coul_debye.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
pair_lj_cut_coul_debye.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_lj_cut_coul_dsf.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_lj_cut_coul_dsf.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
pair_lj_expand.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_lj_expand.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13303 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-27 13:41:29 +00:00
pair_lj_gromacs.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_lj_gromacs.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13303 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-27 13:41:29 +00:00
pair_lj_gromacs_coul_gromacs.cpp add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
pair_lj_gromacs_coul_gromacs.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13303 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-27 13:41:29 +00:00
pair_lj_smooth.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_lj_smooth.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_lj_smooth_linear.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_lj_smooth_linear.h alias pair style lj/sf to lj/smooth/linear and remove/update related files 2017-06-06 17:26:06 -04:00
pair_mie_cut.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_mie_cut.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_morse.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_morse.h Ported Morse to KOKKOS 2017-02-01 17:45:21 +01:00
pair_soft.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_soft.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_table.cpp protect PairTable dtor with copymode 2017-01-05 15:38:45 -07:00
pair_table.h make PairTable::allocate() virtual 2017-01-05 20:46:05 -07:00
pair_yukawa.cpp correct the inner loop range for resetting cutoffs when redefining a pair style 2017-05-16 00:26:18 -04:00
pair_yukawa.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
pair_zbl.cpp add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
pair_zbl.h Modifed ZBL to accomodate mixing 2015-09-23 00:30:30 +00:00
pair_zero.cpp add error location propagation to force->bounds() and force->boundsbig() 2016-10-26 15:53:02 -04:00
pair_zero.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14926 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-05-03 16:01:16 +00:00
pointers.h Refactor PYTHON package and wrapper classes 2017-04-11 21:22:30 -04:00
procmap.cpp Spelling fixes in source files 2017-03-05 18:30:39 -05:00
procmap.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
python.cpp implement functions to execute arbitrary python code from strings or files and recast the python source keyword through using them. 2017-05-11 22:39:08 -04:00
python.h implement functions to execute arbitrary python code from strings or files and recast the python source keyword through using them. 2017-05-11 22:39:08 -04:00
random_mars.cpp NULLed ptrs in files 2016-11-07 16:07:37 +01:00
random_mars.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
random_park.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
random_park.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14860 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-22 15:55:54 +00:00
rcb.cpp patch 17Mar17 2017-03-17 11:29:23 -06:00
rcb.h change to RCB cuts in load-balancing commands, also a new option for fix halt 2017-03-10 15:55:07 -07:00
read_data.cpp Merge branch 'master' into bounds-error-with-code-line 2016-10-28 11:11:28 -04:00
read_data.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14868 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-22 17:54:49 +00:00
read_dump.cpp add fix mscg command, example, lib 2017-01-09 13:36:40 -07:00
read_dump.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
read_restart.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15180 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-15 23:10:12 +00:00
read_restart.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14589 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-15 15:26:57 +00:00
reader.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
reader.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10926 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-11-04 15:52:10 +00:00
reader_native.cpp add fix mscg command, example, lib 2017-01-09 13:36:40 -07:00
reader_native.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
reader_xyz.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
reader_xyz.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10806 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-09-18 16:20:58 +00:00
region.cpp fix spring doc page update 2017-01-17 09:02:56 -07:00
region.h new library functions 2016-10-27 09:34:04 -06:00
region_block.cpp changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
region_block.h new fix wall/gran/region command, REBO bug fix, new example log files 2016-10-06 15:47:41 -06:00
region_cone.cpp whitespace cleanup 2016-10-24 17:13:21 -04:00
region_cone.h new fix wall/gran/region command, REBO bug fix, new example log files 2016-10-06 15:47:41 -06:00
region_cylinder.cpp NULLed ptrs in files 2016-11-07 16:07:37 +01:00
region_cylinder.h Spelling fixes in source files 2017-03-05 18:30:39 -05:00
region_intersect.cpp NULLed ptrs in files 2016-11-07 16:07:37 +01:00
region_intersect.h bug fix for fix GCMC w/ fix shake, enhance of fix wall/gran/region with restarting 2016-10-13 16:55:53 -06:00
region_plane.cpp new fix wall/gran/region command, REBO bug fix, new example log files 2016-10-06 15:47:41 -06:00
region_plane.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
region_prism.cpp new fix wall/gran/region command, REBO bug fix, new example log files 2016-10-06 15:47:41 -06:00
region_prism.h new fix wall/gran/region command, REBO bug fix, new example log files 2016-10-06 15:47:41 -06:00
region_sphere.cpp whitespace cleanup 2016-10-24 17:13:21 -04:00
region_sphere.h Spelling fixes in source files 2017-03-05 18:30:39 -05:00
region_union.cpp NULLed ptrs in files 2016-11-07 16:07:37 +01:00
region_union.h bug fix for fix GCMC w/ fix shake, enhance of fix wall/gran/region with restarting 2016-10-13 16:55:53 -06:00
replicate.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15109 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-06 23:21:39 +00:00
replicate.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12641 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-21 17:09:24 +00:00
rerun.cpp Fix more typos in src files 2017-03-07 00:55:01 -05:00
rerun.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13278 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-23 23:30:50 +00:00
respa.cpp fix gcmc updates from Aidan, trimming of output for replica commands 2017-04-11 08:35:09 -06:00
respa.h fix gcmc updates from Aidan, trimming of output for replica commands 2017-04-11 08:35:09 -06:00
run.cpp pair TIP4P bug fix for cutoffs >> box size 2017-01-06 09:57:27 -07:00
run.h Fix typos in src files 2017-03-05 21:03:40 -05:00
set.cpp support atom style variables for assigning image flags with the set command 2017-05-30 21:52:32 -04:00
set.h changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
special.cpp fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof 2017-03-23 15:31:27 -06:00
special.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13708 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-07-24 15:50:34 +00:00
suffix.h changes to imbalance weight factors 2016-10-05 10:33:39 -06:00
thermo.cpp do not compute properties twice 2017-05-18 12:45:43 -04:00
thermo.h Fix typos in src files 2017-03-05 21:03:40 -05:00
timer.cpp reapply changes to the timer class that got lost somehow 2016-10-18 14:05:08 -04:00
timer.h reapply changes to the timer class that got lost somehow 2016-10-18 14:05:08 -04:00
universe.cpp initialize 'nper' 2016-11-11 07:47:42 -05:00
universe.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
update.cpp fix gcmc units change for chemical potential 2017-03-28 12:34:46 -06:00
update.h changes to imbalance weight factors 2016-10-05 10:33:39 -06:00
variable.cpp Refactor PYTHON package and wrapper classes 2017-04-11 21:22:30 -04:00
variable.h Refactor PYTHON package and wrapper classes 2017-04-11 21:22:30 -04:00
velocity.cpp add error location propagation to atom->set_mass() and atom->check_mass() 2016-10-26 16:01:40 -04:00
velocity.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13278 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-23 23:30:50 +00:00
verlet.cpp fix gcmc updates from Aidan, trimming of output for replica commands 2017-04-11 08:35:09 -06:00
verlet.h fix gcmc updates from Aidan, trimming of output for replica commands 2017-04-11 08:35:09 -06:00
version.h patch 19May17 2017-05-19 07:35:36 -06:00
write_coeff.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15387 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-28 13:51:40 +00:00
write_coeff.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14877 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-26 18:33:10 +00:00
write_data.cpp git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15250 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-01 23:31:09 +00:00
write_data.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
write_dump.cpp added LAST option to dump_modify thresh, more restart info printed out to screen 2016-10-11 12:39:52 -06:00
write_dump.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13601 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-07-15 21:29:44 +00:00
write_restart.cpp minor whitespace cleanup 2017-06-06 17:26:18 -04:00
write_restart.h git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14860 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-22 15:55:54 +00:00