forked from lijiext/lammps
294 lines
7.2 KiB
Plaintext
294 lines
7.2 KiB
Plaintext
/* ----------------------------------------------------------------------
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LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
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Original Version:
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http://lammps.sandia.gov, Sandia National Laboratories
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Steve Plimpton, sjplimp@sandia.gov
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See the README file in the top-level LAMMPS directory.
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-----------------------------------------------------------------------
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USER-CUDA Package and associated modifications:
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https://sourceforge.net/projects/lammpscuda/
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Christian Trott, christian.trott@tu-ilmenau.de
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Lars Winterfeld, lars.winterfeld@tu-ilmenau.de
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Theoretical Physics II, University of Technology Ilmenau, Germany
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See the README file in the USER-CUDA directory.
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This software is distributed under the GNU General Public License.
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------------------------------------------------------------------------- */
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extern __shared__ X_CFLOAT sharedmem[];
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#define BIG 1e10
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__global__ void Domain_PBC_Kernel(int deform_remap, int deform_groupbit, int box_change)
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{
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int idim, otherdims;
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int i = (blockIdx.x * gridDim.y + blockIdx.y) * blockDim.x + threadIdx.x;
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X_CFLOAT lo[3];
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X_CFLOAT hi[3];
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X_CFLOAT* period;
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if(_triclinic == 0) {
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lo[0] = _boxlo[0];
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lo[1] = _boxlo[1];
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lo[2] = _boxlo[2];
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hi[0] = _boxhi[0];
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hi[1] = _boxhi[1];
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hi[2] = _boxhi[2];
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period = _prd;
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} else {
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lo[0] = _boxlo_lamda[0];
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lo[1] = _boxlo_lamda[1];
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lo[2] = _boxlo_lamda[2];
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hi[0] = _boxhi_lamda[0];
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hi[1] = _boxhi_lamda[1];
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hi[2] = _boxhi_lamda[2];
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period = _prd_lamda;
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}
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X_CFLOAT tmpx = X_F(0.5) * (hi[0] + lo[0]);
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X_CFLOAT tmpy = X_F(0.5) * (hi[1] + lo[1]);
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X_CFLOAT tmpz = X_F(0.5) * (hi[2] + lo[2]);
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X_CFLOAT* buf = (X_CFLOAT*) _buffer;
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buf += blockIdx.x * gridDim.y + blockIdx.y;
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buf[0] = tmpx;
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buf += gridDim.x * gridDim.y;
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buf[0] = tmpx;
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buf += gridDim.x * gridDim.y;
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buf[0] = tmpy;
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buf += gridDim.x * gridDim.y;
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buf[0] = tmpy;
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buf += gridDim.x * gridDim.y;
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buf[0] = tmpz;
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buf += gridDim.x * gridDim.y;
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buf[0] = tmpz;
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if(i < _nlocal) {
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if(_periodicity[0]) {
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if(_x[i] < lo[0]) {
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_x[i] += period[0];
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if(deform_remap && _mask[i] & deform_groupbit) _v[i] += _h_rate[0];
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idim = _image[i] & 1023;
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otherdims = _image[i] ^ idim;
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idim--;
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idim &= 1023;
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_image[i] = otherdims | idim;
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}
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if(_x[i] >= hi[0]) {
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_x[i] -= period[0];
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_x[i] = MAX(_x[i], lo[0]);
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if(deform_remap && _mask[i] & deform_groupbit) _v[i] -= _h_rate[0];
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idim = _image[i] & 1023;
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otherdims = _image[i] ^ idim;
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idim++;
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idim &= 1023;
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_image[i] = otherdims | idim;
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}
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}
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if(_periodicity[1]) {
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if(_x[i + _nmax] < lo[1]) {
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_x[i + _nmax] += period[1];
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if(deform_remap && _mask[i] & deform_groupbit) {
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_v[i] += _h_rate[5];
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_v[i + _nmax] += _h_rate[1];
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}
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idim = (_image[i] >> 10) & 1023;
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otherdims = _image[i] ^ (idim << 10);
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idim--;
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idim &= 1023;
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_image[i] = otherdims | (idim << 10);
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}
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if(_x[i + _nmax] >= hi[1]) {
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_x[i + _nmax] -= period[1];
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_x[i + _nmax] = MAX(_x[i + _nmax], lo[1]);
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if(deform_remap && _mask[i] & deform_groupbit) {
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_v[i] -= _h_rate[5];
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_v[i + _nmax] -= _h_rate[1];
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}
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idim = (_image[i] >> 10) & 1023;
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otherdims = _image[i] ^ (idim << 10);
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idim++;
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idim &= 1023;
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_image[i] = otherdims | (idim << 10);
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}
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}
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if(_periodicity[2]) {
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if(_x[i + 2 * _nmax] < lo[2]) {
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_x[i + 2 * _nmax] += period[2];
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if(deform_remap && _mask[i] & deform_groupbit) {
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_v[i] += _h_rate[4];
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_v[i + _nmax] += _h_rate[3];
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_v[i + 2 * _nmax] += _h_rate[2];
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}
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idim = _image[i] >> 20;
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otherdims = _image[i] ^ (idim << 20);
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idim--;
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idim &= 1023;
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_image[i] = otherdims | (idim << 20);
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}
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if(_x[i + 2 * _nmax] >= hi[2]) {
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_x[i + 2 * _nmax] -= period[2];
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_x[i + 2 * _nmax] = MAX(_x[i + 2 * _nmax], lo[2]);
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if(deform_remap && _mask[i] & deform_groupbit) {
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_v[i] -= _h_rate[4];
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_v[i + _nmax] -= _h_rate[3];
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_v[i + 2 * _nmax] -= _h_rate[2];
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}
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idim = _image[i] >> 20;
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otherdims = _image[i] ^ (idim << 20);
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idim++;
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idim &= 1023;
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_image[i] = otherdims | (idim << 20);
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}
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}
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if(box_change) {
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tmpx = _x[i];
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tmpy = _x[i + _nmax];
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tmpz = _x[i + 2 * _nmax];
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}
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}
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__syncthreads();
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if(box_change) {
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X_CFLOAT minx = BIG;
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X_CFLOAT maxx = -BIG;
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X_CFLOAT miny = BIG;
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X_CFLOAT maxy = -BIG;
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X_CFLOAT minz = BIG;
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X_CFLOAT maxz = -BIG;
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if(not _periodicity[0]) {
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sharedmem[threadIdx.x] = tmpx;
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minOfBlock(sharedmem);
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minx = sharedmem[0];
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__syncthreads();
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sharedmem[threadIdx.x] = tmpx;
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maxOfBlock(sharedmem);
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maxx = sharedmem[0];
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__syncthreads();
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} else {
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minx = lo[0];
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maxx = hi[0];
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}
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if(not _periodicity[1]) {
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sharedmem[threadIdx.x] = tmpy;
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minOfBlock(sharedmem);
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miny = sharedmem[0];
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__syncthreads();
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sharedmem[threadIdx.x] = tmpy;
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maxOfBlock(sharedmem);
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maxy = sharedmem[0];
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__syncthreads();
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} else {
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minx = lo[1];
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maxx = hi[1];
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}
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if(not _periodicity[2]) {
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sharedmem[threadIdx.x] = tmpz;
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minOfBlock(sharedmem);
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minz = sharedmem[0];
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__syncthreads();
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sharedmem[threadIdx.x] = tmpz;
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maxOfBlock(sharedmem);
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maxz = sharedmem[0];
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__syncthreads();
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} else {
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minz = lo[2];
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maxz = hi[2];
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}
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if(threadIdx.x == 0) {
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buf = (X_CFLOAT*) _buffer;
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buf += blockIdx.x * gridDim.y + blockIdx.y;
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buf[0] = minx;
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buf += gridDim.x * gridDim.y;
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buf[0] = maxx;
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buf += gridDim.x * gridDim.y;
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buf[0] = miny;
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buf += gridDim.x * gridDim.y;
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buf[0] = maxy;
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buf += gridDim.x * gridDim.y;
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buf[0] = minz;
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buf += gridDim.x * gridDim.y;
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buf[0] = maxz;
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}
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}
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}
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__global__ void Domain_reduceBoxExtent(double* extent, int n)
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{
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X_CFLOAT* buf = (X_CFLOAT*) _buffer;
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buf += blockIdx.x * n;
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copyGlobToShared(buf, sharedmem, n);
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if(blockIdx.x % 2 == 0)
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minOfData(sharedmem, n);
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else
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maxOfData(sharedmem, n);
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extent[blockIdx.x] = sharedmem[0];
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}
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__global__ void Domain_lamda2x_Kernel(int n)
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{
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int i = (blockIdx.x * gridDim.y + blockIdx.y) * blockDim.x + threadIdx.x;
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if(i < n) {
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X_CFLOAT ytmp = _x[i + _nmax];
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X_CFLOAT ztmp = _x[i + 2 * _nmax];
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_x[i] = _h[0] * _x[i] + _h[5] * ytmp + _h[4] * ztmp + _boxlo[0];
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_x[i + _nmax] = _h[1] * ytmp + _h[3] * ztmp + _boxlo[1];
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_x[i + 2 * _nmax] = _h[2] * ztmp + _boxlo[2];
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}
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}
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__global__ void Domain_x2lamda_Kernel(int n)
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{
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int i = (blockIdx.x * gridDim.y + blockIdx.y) * blockDim.x + threadIdx.x;
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X_CFLOAT delta[3];
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if(i < n) {
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delta[0] = _x[i] - _boxlo[0];
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delta[1] = _x[i + _nmax] - _boxlo[1];
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delta[2] = _x[i + 2 * _nmax] - _boxlo[2];
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_x[i] = _h_inv[0] * delta[0] + _h_inv[5] * delta[1] + _h_inv[4] * delta[2];
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_x[i + _nmax] = _h_inv[1] * delta[1] + _h_inv[3] * delta[2];
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_x[i + 2 * _nmax] = _h_inv[2] * delta[2];
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}
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}
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