forked from lijiext/lammps
182 lines
4.9 KiB
C++
182 lines
4.9 KiB
C++
/* -*- c++ -*- ----------------------------------------------------------
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LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
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http://lammps.sandia.gov, Sandia National Laboratories
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Steve Plimpton, sjplimp@sandia.gov
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Copyright (2003) Sandia Corporation. Under the terms of Contract
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DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
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certain rights in this software. This software is distributed under
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the GNU General Public License.
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See the README file in the top-level LAMMPS directory.
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------------------------------------------------------------------------- */
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#ifndef LMP_GROUP_H
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#define LMP_GROUP_H
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#include "pointers.h"
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#include <map>
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namespace LAMMPS_NS {
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class Group : protected Pointers {
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public:
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int ngroup; // # of defined groups
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char **names; // name of each group
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int *bitmask; // one-bit mask for each group
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int *inversemask; // inverse mask for each group
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int *dynamic; // 1 if dynamic, 0 if not
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Group(class LAMMPS *);
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~Group();
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void assign(int, char **); // assign atoms to a group
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void create(char *, int *); // add flagged atoms to a group
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int find(const char *); // lookup name in list of groups
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int find_or_create(const char *); // lookup name or create new group
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void write_restart(FILE *);
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void read_restart(FILE *);
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bigint count_all(); // count atoms in group all
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bigint count(int); // count atoms in group
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bigint count(int,int); // count atoms in group & region
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double mass(int); // total mass of atoms in group
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double mass(int,int);
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double charge(int); // total charge of atoms in group
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double charge(int,int);
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void bounds(int, double *); // bounds of atoms in group
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void bounds(int, double *, int);
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void xcm(int, double, double *); // center-of-mass coords of group
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void xcm(int, double, double *, int);
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void vcm(int, double, double *); // center-of-mass velocity of group
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void vcm(int, double, double *, int);
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void fcm(int, double *); // total force on group
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void fcm(int, double *, int);
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double ke(int); // kinetic energy of group
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double ke(int, int);
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double gyration(int, double, double *); // radius-of-gyration of group
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double gyration(int, double, double *, int);
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void angmom(int, double *, double *); // angular momentum of group
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void angmom(int, double *, double *, int);
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void torque(int, double *, double *); // torque on group
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void torque(int, double *, double *, int);
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void inertia(int, double *, double [3][3]); // inertia tensor
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void inertia(int, double *, double [3][3], int);
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void omega(double *, double [3][3], double *); // angular velocity
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private:
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int me;
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std::map<tagint,int> *hash;
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int find_unused();
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void add_molecules(int, int);
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// callback functions for ring communication
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static void molring(int, char *, void *);
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int molbit;
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};
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}
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#endif
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/* ERROR/WARNING messages:
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E: Group command before simulation box is defined
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The group command cannot be used before a read_data, read_restart, or
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create_box command.
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E: Illegal ... command
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Self-explanatory. Check the input script syntax and compare to the
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documentation for the command. You can use -echo screen as a
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command-line option when running LAMMPS to see the offending line.
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E: Could not find group delete group ID
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Self-explanatory.
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E: Cannot delete group all
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Self-explanatory.
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E: Cannot delete group currently used by a fix
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Self-explanatory.
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E: Cannot delete group currently used by a compute
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Self-explanatory.
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E: Cannot delete group currently used by a dump
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Self-explanatory.
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E: Cannot delete group currently used by atom_modify first
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Self-explanatory.
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E: Could not find group clear group ID
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Self-explanatory.
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E: Cannot clear group all
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This operation is not allowed.
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E: Too many groups
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The maximum number of atom groups (including the "all" group) is
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given by MAX_GROUP in group.cpp and is 32.
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E: Group region ID does not exist
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A region ID used in the group command does not exist.
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E: Illegal range increment value
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The increment must be >= 1.
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E: Variable name for group does not exist
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Self-explanatory.
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E: Variable for group is invalid style
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Only atom-style variables can be used.
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E: Group ID does not exist
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A group ID used in the group command does not exist.
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E: Cannot subtract groups using a dynamic group
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This operation is not allowed.
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E: Cannot union groups using a dynamic group
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This operation is not allowed.
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E: Cannot intersect groups using a dynamic group
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This operation is not allowed.
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E: Group dynamic cannot reference itself
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Self-explanatory.
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E: Group dynamic parent group does not exist
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Self-explanatory.
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E: Group all cannot be made dynamic
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This operation is not allowed.
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E: Insufficient Jacobi rotations for group::omega
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UNDOCUMENTED
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*/
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