lammps/examples/peri/log.27Nov18.peri.ves.g++.1

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LAMMPS (27 Nov 2018)
using 1 OpenMP thread(s) per MPI task
# small Peridynamic cylinder hit by projectile
units si
boundary s s s
atom_style peri
atom_modify map array
neighbor 0.0010 bin
# small target
lattice sc 0.0005
Lattice spacing in x,y,z = 0.0005 0.0005 0.0005
region target cylinder y 0.0 0.0 0.0050 -0.0050 0.0 units box
create_box 1 target
Created orthogonal box = (-0.005 -0.005 -0.005) to (0.005 0 0.005)
1 by 1 by 1 MPI processor grid
create_atoms 1 region target
Created 3487 atoms
Time spent = 0.000948906 secs
pair_style peri/ves
pair_coeff * * 14.9e9 14.9e9 0.0015001 0.0005 0.25 0.5 0.001
set group all density 2200
3487 settings made for density
set group all volume 1.25e-10
3487 settings made for volume
velocity all set 0.0 0.0 0.0 sum no units box
fix 1 all nve
# spherical indenter to shatter target
variable y0 equal 0.00155
variable vy equal -100
variable y equal "v_y0 + step*dt*v_vy"
fix 2 all indent 1e17 sphere 0.0000 v_y 0.0000 0.0015 units box
compute 1 all damage/atom
timestep 1.0e-7
thermo 100
#dump 1 all custom 100 dump.peri id type x y z c_1
#dump 2 all image 50 image.*.jpg type type # axes yes 0.8 0.02 view 80 -30 adiam 0.0006
#dump_modify 2 pad 4
#dump 3 all movie 50 movie.mpg type type # axes yes 0.8 0.02 view 80 -30 adiam 0.0006
#dump_modify 3 pad 4
run 1000
Neighbor list info ...
update every 1 steps, delay 10 steps, check yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 0.0025001
ghost atom cutoff = 0.0025001
binsize = 0.00125005, bins = 9 5 9
2 neighbor lists, perpetual/occasional/extra = 1 1 0
(1) pair peri/ves, perpetual
attributes: half, newton on
pair build: half/bin/atomonly/newton
stencil: half/bin/3d/newton
bin: standard
(2) fix PERI_NEIGH, occasional
attributes: full, newton on
pair build: full/bin/atomonly
stencil: full/bin/3d
bin: standard
Peridynamic bonds:
total # of bonds = 335966
bonds/atom = 96.3482
Per MPI rank memory allocation (min/avg/max) = 65.41 | 65.41 | 65.41 Mbytes
Step Temp E_pair E_mol TotEng Press Volume
0 0 0 0 0 0 5.0030006e-07
100 9.7323839e+24 248625.39 0 951247.15 9.3626715e+11 5.0030006e-07
200 1.2061753e+27 1013477.4 0 88092352 1.0509747e+14 5.5236899e-07
300 2.7144154e+27 3853028.1 0 1.998181e+08 1.7162586e+14 7.6121038e-07
400 3.40253e+27 12536380 0 2.5817934e+08 1.5995767e+14 1.0237832e-06
500 3.9896399e+27 9604773.5 0 2.9763367e+08 1.5530851e+14 1.2363731e-06
600 5.1484768e+27 20065080 0 3.9175529e+08 1.6320898e+14 1.5182588e-06
700 1.1341683e+28 8156461.7 0 8.269603e+08 2.765964e+14 1.9735225e-06
800 1.1679489e+28 4475262.6 0 8.4766672e+08 2.1589017e+14 2.6037667e-06
900 1.1714785e+28 2839888 0 8.4857954e+08 1.7092697e+14 3.2986395e-06
1000 1.1716494e+28 1690965.6 0 8.4755402e+08 1.3801485e+14 4.0858554e-06
Loop time of 27.0077 on 1 procs for 1000 steps with 3487 atoms
99.5% CPU use with 1 MPI tasks x 1 OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 26.294 | 26.294 | 26.294 | 0.0 | 97.36
Neigh | 0.5863 | 0.5863 | 0.5863 | 0.0 | 2.17
Comm | 0.0051315 | 0.0051315 | 0.0051315 | 0.0 | 0.02
Output | 0.00033832 | 0.00033832 | 0.00033832 | 0.0 | 0.00
Modify | 0.10736 | 0.10736 | 0.10736 | 0.0 | 0.40
Other | | 0.01489 | | | 0.06
Nlocal: 3487 ave 3487 max 3487 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 539960 ave 539960 max 539960 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs: 1.20908e+06 ave 1.20908e+06 max 1.20908e+06 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 1209076
Ave neighs/atom = 346.738
Neighbor list builds = 42
Dangerous builds = 0
Please see the log.cite file for references relevant to this simulation
Total wall time: 0:00:27