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10,859 Commits 9 Branches 198 Tags 1.1 GiB
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10859 Commits

Author SHA1 Message Date
Richard Berger df304f8ca1 Updated HTML after latest tool changes and corrections 2016-09-13 20:22:17 -04:00
Richard Berger 3c88fa1436 Fix bug introduced in latest changes 2016-09-13 20:18:36 -04:00
Richard Berger b7ddc860c7 Fix error in Manual.txt 2016-09-13 20:00:17 -04:00
Richard Berger c61d5a1a29 Raise exception and output error if ulb,ule and olb,ole are unbalanced 2016-09-13 19:53:57 -04:00
Richard Berger 1dc19eceb2 Update unit tests to reflect new behavior 2016-09-13 19:03:57 -04:00
Richard Berger ae6b540d3c Add indentation to multi-paragraph entries 2016-09-13 19:03:46 -04:00
Richard Berger 300d1ef52e Remove references to former empty file 2016-09-13 14:17:27 -04:00
Richard Berger 633840c876 remove empty file 2016-09-13 13:46:45 -04:00
Richard Berger c44228b0cc Created more complete TOC and indices 
This adds index sections on the main navigation bar and finally silences the
missing TOC warnings.
 2016-09-13 13:40:18 -04:00
Richard Berger 90f6395ddc Filter out more header numbers 2016-09-13 13:31:30 -04:00
Richard Berger 546582ea02 Escape pipe characters 2016-09-12 23:18:38 -04:00
Axel Kohlmeyer b76a42d3e0 making a few more in-page links unique. some more small corrections and clenups 2016-09-12 19:57:37 -04:00
Axel Kohlmeyer 54d5a14fe3 more doc formatting issues triggering errors/warnings in sphinx 2016-09-12 14:48:47 -04:00
Axel Kohlmeyer f6efde3730 some more smaller doc file cleanups. almost there... 2016-09-12 13:37:08 -04:00
Axel Kohlmeyer 4c399fc553 more typesetting corrections in docs indicated by sphinx warnings 2016-09-12 12:23:53 -04:00
Axel Kohlmeyer 328b7abeaa correct various formatting issues flagged by sphinx 2016-09-11 23:24:32 -04:00
Axel Kohlmeyer c3de3c142f correct references to Howto subsections 2016-09-11 23:01:16 -04:00
Axel Kohlmeyer 80f94c7d02 avoid bad typesetting of include images 2016-09-11 20:09:46 -04:00
Axel Kohlmeyer e11bfcf117 updates in "Getting Started" for running on Windows. 2016-09-11 20:09:25 -04:00
Axel Kohlmeyer be1cf40f2b update html files with recent changes 2016-09-11 19:34:04 -04:00
Axel Kohlmeyer 555a02786d correct and improve typesetting for various sub-sub-subsections in "Getting started" 2016-09-11 19:28:56 -04:00
Axel Kohlmeyer cf6f504977 update description of Windows support in "Getting started" Section 2016-09-11 19:07:45 -04:00
Axel Kohlmeyer b698f389bc correct and improve links to PyMol and MATLAB 2016-09-11 18:46:06 -04:00
Axel Kohlmeyer e96a8a4677 regenerate html pages with the updated content from the corrections 2016-09-10 21:15:44 -04:00
Axel Kohlmeyer f8d5488409 correct section link descriptions 2016-09-10 21:03:38 -04:00
Axel Kohlmeyer 4d298ccf2f Give credit to Richard for being the lammps.org and senior jenkins wrangler 2016-09-10 20:18:05 -04:00
Axel Kohlmeyer cb3044091c place ellipses in square brackets to avoid sphinx choking on them 2016-09-10 20:05:50 -04:00
Steve Plimpton dd34feb2bd Merge branch 'small' into integration 2016-09-08 14:35:36 -06:00
Steve Plimpton 2524c5b526 Merge branch 'small-bugfixes' of https://github.com/akohlmey/lammps into small 2016-09-08 14:31:27 -06:00
sjplimp b866e0663b Merge pull request #24 from rbberger/info_command_styles 
Info command extensions
 2016-09-08 14:16:41 -06:00
sjplimp 5d0da95a0b Merge pull request #23 from akohlmey/doc-corrections-and-updates 
Doc corrections and updates
 2016-09-08 14:15:56 -06:00
sjplimp 07e55ef61e Merge pull request #22 from akohlmey/colvars-update 
accumulated colvars library update and lib "make clean" improvement
 2016-09-08 14:14:49 -06:00
Steve Plimpton 236ebf7fab Kokkos lib update 2016-09-08 13:56:18 -06:00
Axel Kohlmeyer a6df1e53b4 ignore all variants of the vashishta pair styles in src/ 2016-09-08 14:46:09 -04:00
Axel Kohlmeyer 9b2d5ff3e7 remove executable permissions on non-executables and non-scripts 2016-09-08 14:45:07 -04:00
Axel Kohlmeyer c33e1049d8 delete duplicate fclose() in fix ttm/mod constructor 2016-09-08 11:51:22 -04:00
Richard Berger 1f901c9b2d Update generated HTML docs of info command 2016-09-08 09:53:57 -04:00
Richard Berger 79b8f6320d Update docs of info command 2016-09-08 09:53:14 -04:00
Richard Berger 2dcfb51d18 Change info command styles syntax 
Change to `info styles [all|atom|pair|compute|...]`.
By default, `info styles` will print all styles.
 2016-09-08 09:38:52 -04:00
Richard Berger ba2b523bf4 Use factory for region style creation 2016-09-08 09:38:51 -04:00
Richard Berger fd2b886422 Use factory for dump style creation 2016-09-08 09:38:51 -04:00
Richard Berger 9952d8a210 Use factory for minimize style creation 2016-09-08 09:38:51 -04:00
Richard Berger 85c132943e Use factory for integrate style creation 2016-09-08 09:38:48 -04:00
Richard Berger 55260ad53e Add missing delete in destructor 2016-09-08 09:32:48 -04:00
Richard Berger a1e5fc0fca Use factory for AtomVec style creation 2016-09-08 09:32:48 -04:00
Richard Berger 88e10b401d Cleanup force.h after refactoring 2016-09-08 09:32:48 -04:00
Richard Berger 1d03913aa3 Use factory for kspace style creation 2016-09-08 09:32:48 -04:00
Richard Berger 0745a9f33f Use factory for improper style creation 2016-09-08 09:32:48 -04:00
Richard Berger 906c50223a Use factory for dihedral style creation 2016-09-08 09:32:47 -04:00
Richard Berger 35bdeb63e2 Use factory for angle style creation 2016-09-08 09:32:47 -04:00