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63 Commits

Author SHA1 Message Date
Giacomo Fiorin b0263e87bb Fix missing force with extended-Lagrangian mass 2016-12-27 17:16:32 -05:00
Giacomo Fiorin f553e230db Update Colvars library to version 2016-12-22 
Significant code cleanup and several fixes (walls + extended Lagrangian)

New harmonicWalls bias to apply confining boundaries with time-dependent force
constant & integration
 2016-12-27 13:17:34 -05:00
Giacomo Fiorin 6ab716164b Fix seg fault for gyration collective variable 2016-12-27 13:17:02 -05:00
Giacomo Fiorin 7a45c72b97 Allow extended Lagrangian on non-scalar collective variables 2016-12-27 12:35:30 -05:00
Giacomo Fiorin 182141b850 Make SMP parallelism for Colvars optional 2016-10-24 17:13:34 -04:00
Giacomo Fiorin e02505c8cc Add ensemble-biased metadynamics (Fabrizio Marinelli, NIH) 2016-10-24 17:11:09 -04:00
Giacomo Fiorin be2d155cef Minor changes and fixes not relevant to LAMMPS 2016-10-24 17:10:52 -04:00
Giacomo Fiorin c243093980 Fix wall forces and subtractAppliedForce for extended-Lagrangian ABF 2016-10-24 17:05:47 -04:00
Giacomo Fiorin ad57a17f48 Add C-linkage wrapper for colvarscript (useful with ctypes) 2016-10-24 16:48:20 -04:00
Axel Kohlmeyer 683689c808 revert to previous style conventions for size_t constants 2016-10-08 11:00:23 -04:00
Axel Kohlmeyer e01e90eb96 workaround for double free issue when using USER-COLVARS with lammps code loaded as shared library into a standalone executable 2016-10-08 10:45:22 -04:00
Giacomo Fiorin 8809a603fb Colvars update: issue a warning that cannot be ignored regarding total forces 2016-10-05 18:26:21 -04:00
Giacomo Fiorin 969d3cf4b0 Colvars update: make ABF check that the colvar isn't using already subtractAppliedForce 2016-10-05 18:25:40 -04:00
Axel Kohlmeyer 6d200061ca update colvars library to version 2016-09-30 2016-09-30 08:15:44 -04:00
sjplimp 484122b8b6 sync with GH 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15592 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-09-16 19:21:34 +00:00
sjplimp b190abea39 sync with GH 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15561 f3b2605a-c512-4ea7-a41b-209d697bcdaa
 2016-09-08 20:20:32 +00:00
sjplimp efaa84a4ea git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15430 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-03 19:32:03 +00:00
sjplimp ee24be38cb git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15371 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-27 14:09:42 +00:00
sjplimp 05398a6863 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15315 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-15 22:25:17 +00:00
sjplimp 2fcd26f6c4 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15200 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:07:51 +00:00
sjplimp e653da12a6 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15095 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-02 14:03:00 +00:00
sjplimp dfb0f528c0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15038 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-05-12 13:52:42 +00:00
sjplimp 00f38fdaf0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14910 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-30 18:06:25 +00:00
sjplimp 17fd5898df git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14900 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-28 14:48:56 +00:00
sjplimp f50b03fcab git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14830 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-15 16:07:28 +00:00
sjplimp 212a955285 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14829 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-15 16:07:01 +00:00
sjplimp c46d973c2b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14823 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-13 22:25:46 +00:00
sjplimp 20beaccf0f git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14703 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-03-01 20:40:25 +00:00
sjplimp 08b53bb709 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14657 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-02-18 22:31:59 +00:00
sjplimp 449f373db5 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14165 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-22 22:08:30 +00:00
sjplimp 942cce877b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14004 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-09-08 23:38:11 +00:00
sjplimp 6e40300d26 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13670 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-07-22 14:36:59 +00:00
sjplimp c676c2d560 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13445 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-04-30 14:10:18 +00:00
sjplimp f539e43b22 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13444 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-04-30 14:09:42 +00:00
sjplimp 974e1eb022 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13396 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-04-06 15:14:53 +00:00
sjplimp 5a0a8f1335 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13207 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-09 14:50:53 +00:00
sjplimp 067833cf07 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13126 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-02-19 18:20:52 +00:00
sjplimp c4af1cdbbd git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12811 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-12-02 02:09:53 +00:00
sjplimp 51a148df16 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12650 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-28 19:53:17 +00:00
sjplimp 211c12c39e git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12613 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-07 20:30:53 +00:00
sjplimp 044084847b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12612 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-07 20:30:25 +00:00
sjplimp b69be175f0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12326 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-08-14 23:29:42 +00:00
sjplimp e3824e9332 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12325 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-08-14 23:29:25 +00:00
sjplimp 5593d42f32 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12063 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-06-03 13:19:06 +00:00
sjplimp d17c0325d4 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11969 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-05-12 15:08:14 +00:00
sjplimp 287db2231a git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11821 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-04-18 14:07:18 +00:00
sjplimp 19e47c5264 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11448 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-02-01 18:11:18 +00:00
sjplimp d07827a3bc git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10899 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-10-30 15:25:42 +00:00
sjplimp 6203761e12 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10823 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-09-23 16:47:50 +00:00
sjplimp 6dc2447695 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10119 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-27 22:48:40 +00:00